1
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Chen MA, Lee SH, Kang PK. Inertia-induced mixing and reaction maximization in laminar porous media flows. Proc Natl Acad Sci U S A 2024; 121:e2407145121. [PMID: 39636852 DOI: 10.1073/pnas.2407145121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2024] [Accepted: 11/11/2024] [Indexed: 12/07/2024] Open
Abstract
Solute transport and biogeochemical reactions in porous and fractured media flows are controlled by mixing, as are subsurface engineering operations such as contaminant remediation, geothermal energy production, and carbon sequestration. Porous media flows are generally regarded as slow, so the effects of fluid inertia on mixing and reaction are typically ignored. Here, we demonstrate through microfluidic experiments and numerical simulations of mixing-induced reaction that inertial recirculating flows readily emerge in laminar porous media flows and dramatically alter mixing and reaction dynamics. An optimal Reynolds number that maximizes the reaction rate is observed for individual pore throats of different sizes. This reaction maximization is attributed to the effects of recirculation flows on reactant availability, mixing, and reaction completion, which depend on the topology of recirculation relative to the boundary of the reactants or mixing interface. Recirculation enhances mixing and reactant availability, but a further increase in flow velocity reduces the residence time in recirculation, leading to a decrease in reaction rate. The reaction maximization is also confirmed in a flow channel with grain inclusions and randomized porous media. Interestingly, the domain-wide reaction rate shows a dramatic increase with increasing Re in the randomized porous media case. This is because fluid inertia induces complex three-dimensional flows in randomized porous media, which significantly increases transverse spreading and mixing. This study shows how inertial flows control reaction dynamics at the pore scale and beyond, thus having major implications for a wide range of environmental systems.
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Affiliation(s)
- Michael A Chen
- Department of Earth and Environmental Sciences, College of Science and Engineering, University of Minnesota, Minneapolis, MN 55455
| | - Sang Hyun Lee
- Department of Earth and Environmental Sciences, College of Science and Engineering, University of Minnesota, Minneapolis, MN 55455
| | - Peter K Kang
- Department of Earth and Environmental Sciences, College of Science and Engineering, University of Minnesota, Minneapolis, MN 55455
- Saint Anthony Falls Laboratory, College of Science and Engineering, University of Minnesota, Minneapolis, MN 55414
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2
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Zhao T, Zeng P, Zhang Y, Li J, Sun H, Gablech I, Chang H, Yuan X, Neužil P, Feng J. Inertial co-focusing of heterogeneous particles in hybrid microfluidic channels with constantly variable cross-sections. LAB ON A CHIP 2024; 24:5032-5042. [PMID: 39344900 DOI: 10.1039/d4lc00479e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/01/2024]
Abstract
Heterogeneous particles co-focusing to a single stream is a vital prerequisite for cell counting and enumeration, playing an essential role in flow cytometry and single-cell analysis. Microfluidics-based inertial focusing holds great research prospects due to its simplicity of devices, ease of operation, high throughput, and freedom from external fields. Combining microfluidic channels with two or more different geometries has become a powerful tool for high-efficiency particle focusing. Here, we explored hybrid microfluidic channels for heterogeneous particle co-focusing. Four different annular channels with obstacles distributed on the inner wall were constructed and simulated, obtaining constantly variable secondary flows. Then we used four different fluorescent particles with the size of 10 μm, 12 μm 15 μm, and 20 μm as well as their mixture to perform the inertial focusing experiments of multi-sized particles. Theoretical simulation and experimental results demonstrated a focusing efficiency of >99%. Finally, we further utilized human white blood cells to estimate the co-focusing performance of our hybrid microfluidic channel, resulting in a high focusing efficiency of >92% and a high throughput of ≈8000 cell s-1. The hybrid microfluidic channels, capable of high-precision heterogeneous particle co-focusing, could pave a broad avenue for microfluidic flow cytometry and single-cell analysis.
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Affiliation(s)
- Tianwei Zhao
- School of Microelectronics, Hefei University of Technology, Hefei, 230601, China.
| | - Peng Zeng
- School of Microelectronics, Hefei University of Technology, Hefei, 230601, China.
| | - Yuanting Zhang
- Ministry of Education Key Laboratory of Micro and Nano Systems for Aerospace, School of Mechanical Engineering, Northwestern Polytechnical University, Xi'an, 710072, China.
| | - Jinxia Li
- Department of Medical Laboratory, Xi'an International Medical Centre Hospital, Xi'an 710100, China
| | - Hui Sun
- Department of Medical Laboratory, Xi'an International Medical Centre Hospital, Xi'an 710100, China
| | - Imrich Gablech
- Department of Microelectronics, FEEC, Brno University of Technology, Technicka 10, CZ-616 00 Brno, Czech Republic
| | - Honglong Chang
- Ministry of Education Key Laboratory of Micro and Nano Systems for Aerospace, School of Mechanical Engineering, Northwestern Polytechnical University, Xi'an, 710072, China.
| | - Xichen Yuan
- Ministry of Education Key Laboratory of Micro and Nano Systems for Aerospace, School of Mechanical Engineering, Northwestern Polytechnical University, Xi'an, 710072, China.
| | - Pavel Neužil
- Ministry of Education Key Laboratory of Micro and Nano Systems for Aerospace, School of Mechanical Engineering, Northwestern Polytechnical University, Xi'an, 710072, China.
| | - Jianguo Feng
- School of Microelectronics, Hefei University of Technology, Hefei, 230601, China.
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3
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Chen C, Ganar KA, de Haas RJ, Jarnot N, Hogeveen E, de Vries R, Deshpande S. Elastin-like polypeptide coacervates as reversibly triggerable compartments for synthetic cells. Commun Chem 2024; 7:198. [PMID: 39232074 PMCID: PMC11374812 DOI: 10.1038/s42004-024-01270-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2024] [Accepted: 08/05/2024] [Indexed: 09/06/2024] Open
Abstract
Compartmentalization is a vital aspect of living cells to orchestrate intracellular processes. In a similar vein, constructing dynamic and responsive sub-compartments is key to synthetic cell engineering. In recent years, liquid-liquid phase separation via coacervation has offered an innovative avenue for creating membraneless organelles (MOs) within artificial cells. Here, we present a lab-on-a-chip system to reversibly trigger peptide-based coacervates within cell-mimicking confinements. We use double emulsion droplets (DEs) as our synthetic cell containers while pH-responsive elastin-like polypeptides (ELPs) act as the coacervate system. We first present a high-throughput microfluidic DE production enabling efficient encapsulation of the ELPs. The DEs are then harvested to perform multiple MO formation-dissolution cycles using pH as well as temperature variation. For controlled long-term visualization and modulation of the external environment, we developed an integrated microfluidic device for trapping and environmental stimulation of DEs, with negligible mechanical force, and demonstrated a proof-of-principle osmolyte-based triggering to induce multiple MO formation-dissolution cycles. In conclusion, our work showcases the use of DEs and ELPs in designing membraneless reversible compartmentalization within synthetic cells via physicochemical triggers. Additionally, presented on-chip platform can be applied over a wide range of phase separation and vesicle systems for applications in synthetic cells and beyond.
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Affiliation(s)
- Chang Chen
- Laboratory of Physical Chemistry and Soft Matter, Wageningen University and Research, Stippeneng 4, 6708 WE, Wageningen, The Netherlands
| | - Ketan A Ganar
- Laboratory of Physical Chemistry and Soft Matter, Wageningen University and Research, Stippeneng 4, 6708 WE, Wageningen, The Netherlands
| | - Robbert J de Haas
- Laboratory of Physical Chemistry and Soft Matter, Wageningen University and Research, Stippeneng 4, 6708 WE, Wageningen, The Netherlands
| | - Nele Jarnot
- Laboratory of Physical Chemistry and Soft Matter, Wageningen University and Research, Stippeneng 4, 6708 WE, Wageningen, The Netherlands
| | - Erwin Hogeveen
- Laboratory of Physical Chemistry and Soft Matter, Wageningen University and Research, Stippeneng 4, 6708 WE, Wageningen, The Netherlands
| | - Renko de Vries
- Laboratory of Physical Chemistry and Soft Matter, Wageningen University and Research, Stippeneng 4, 6708 WE, Wageningen, The Netherlands
| | - Siddharth Deshpande
- Laboratory of Physical Chemistry and Soft Matter, Wageningen University and Research, Stippeneng 4, 6708 WE, Wageningen, The Netherlands.
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Liu Z, Luo Y, Chen L, Yang Y, Lyu S, Luo Z. The Droplet Creeping-Sliding Dynamic Wetting Mechanism on Bionic Self-Cleaning Surfaces. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2024; 40:12602-12612. [PMID: 38848496 DOI: 10.1021/acs.langmuir.4c01063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2024]
Abstract
The dynamic wetting behavior of droplets has been of wide concern due to the hazards of accretion/icing of supercooled droplets on engineering components/systems served in low temperature freezing rain environment; thus, it is urgent to establish the relationship between droplet depinning/removing behaviors and surface characteristics. In this article, the actual rotation conditions of moving components such as wind turbine blades are simulated. The self-cleaning hydrophobic coating surface(S1) and bionic superhydrophobic coating surface(S2) show outstanding droplet removal performance compared to hydrophilic bare steel surface(S0), and the average speed of the droplet removal is increased by 400-500%. The "creeping-sliding" behavior of droplets on self-cleaning coatings is investigated by the change of droplet displacement(ΔD). The effect of the energy storage caused by the droplet creeping process provides initial kinetic energy for the droplet removal. Combined with the experimental data and theoretical model, the critical depinning resistance is calculated. The difference of the wetting interface free energy(ΔEx) during the dynamic wetting process of the droplets on the bionic superhydrophobic self-cleaning surface is researched. And the influence mechanism of the droplet embedded depth(x) on the creeping/sliding behavior in the nanotexture is clarified. Thus, the mechanical criterion of droplet depinning is proposed (the error is about 10%). The results can provide a theoretical basis for the design principle of antifreezing rain coatings on moving components.
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Affiliation(s)
- Zexuan Liu
- School of Materials, Sun Yat-Sen University, Shenzhen 518107, P. R. China
| | - Yimin Luo
- School of Materials, Sun Yat-Sen University, Shenzhen 518107, P. R. China
- State Key Laboratory of Solid Lubrication, Lanzhou Insti-tute of Chemical Physics, Chinese Academy of Sciences, Gansu Lanzhou 730000, P. R. China
| | - Litao Chen
- School of Materials, Sun Yat-Sen University, Shenzhen 518107, P. R. China
| | - Yujie Yang
- School of Materials, Sun Yat-Sen University, Shenzhen 518107, P. R. China
| | - Shushen Lyu
- School of Materials, Sun Yat-Sen University, Shenzhen 518107, P. R. China
| | - Zhuangzhu Luo
- School of Materials, Sun Yat-Sen University, Shenzhen 518107, P. R. China
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5
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Sahin MA, Shehzad M, Destgeer G. Stopping Microfluidic Flow. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2024; 20:e2307956. [PMID: 38143295 DOI: 10.1002/smll.202307956] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Revised: 11/13/2023] [Indexed: 12/26/2023]
Abstract
A cross-comparison of three stop-flow configurations-such as low-pressure (LSF), high-pressure open-circuit (OC-HSF), and high-pressure short-circuit (SC-HSF) stop-flow-is presented to rapidly bring a high velocity flow O(m s-1) within a microchannel to a standstill O(µm s-1). The performance of three stop-flow configurations is assessed by measuring residual flow velocities within microchannels having three orders of magnitude different flow resistances. The LSF configuration outperforms the OC-HSF and SC-HSF configurations within a high flow resistance microchannel and results in a residual velocity of <10 µm s-1. The OC-HSF configuration results in a residual velocity of <150 µm s-1 within a low flow resistance microchannel. The SC-HSF configuration results in a residual velocity of <200 µm s-1 across the three orders-of-magnitude different flow resistance microchannels, and <100 µm s-1 for the low flow resistance channel. It is hypothesized that residual velocity results from compliance in fluidic circuits, which is further investigated by varying the elasticity of microchannel walls and connecting tubing. A numerical model is developed to estimate the expanded volumes of the compliant microchannel and connecting tubings under a pressure gradient and to calculate the distance traveled by the sample fluid. A comparison of the numerically and experimentally obtained traveling distances confirms the hypothesis that the residual velocities are an outcome of the compliance in the fluidic circuit.
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Affiliation(s)
- Mehmet Akif Sahin
- Control and Manipulation of Microscale Living Objects, Department of Electrical Engineering, School of Computation, Information and Technology (CIT), Center for Translational Cancer Research (TranslaTUM), Technical University of Munich, Einsteinstraße 25, 81675, Munich, Germany
| | - Muhammad Shehzad
- Control and Manipulation of Microscale Living Objects, Department of Electrical Engineering, School of Computation, Information and Technology (CIT), Center for Translational Cancer Research (TranslaTUM), Technical University of Munich, Einsteinstraße 25, 81675, Munich, Germany
| | - Ghulam Destgeer
- Control and Manipulation of Microscale Living Objects, Department of Electrical Engineering, School of Computation, Information and Technology (CIT), Center for Translational Cancer Research (TranslaTUM), Technical University of Munich, Einsteinstraße 25, 81675, Munich, Germany
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Yao Y, Lin Y, Wu Z, Li Z, He X, Wu Y, Sun Z, Ding W, He L. Solute-particle separation in microfluidics enhanced by symmetrical convection. RSC Adv 2024; 14:1729-1740. [PMID: 38192326 PMCID: PMC10772704 DOI: 10.1039/d3ra07285a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2023] [Accepted: 12/24/2023] [Indexed: 01/10/2024] Open
Abstract
The utilization of microfluidic technology for miniaturized and efficient particle sorting holds significant importance in fields such as biology, chemistry, and healthcare. Passive separation methods, achieved by modifying the geometric shapes of microchannels, enable gentle and straightforward enrichment and separation of particles. Building upon previous discussions regarding the effects of column arrays on fluid flow and particle separation within microchips, we introduced a column array structure into an H-shaped microfluidic chip. It was observed that this structure enhanced mass transfer between two fluids while simultaneously intercepting particles within one fluid, satisfying the requirements for particle interception. This enhancement was primarily achieved by transforming the originally single-mode diffusion-based mass transfer into dual-mode diffusion-convection mass transfer. By further optimizing the column array, it was possible to meet the basic requirements of mass transfer and particle interception with fewer microcolumns, thereby reducing device pressure drop and facilitating the realization of parallel and high-throughput microfluidic devices. These findings have enhanced the potential application of microfluidic systems in clinical and chemical engineering domains.
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Affiliation(s)
- Yurou Yao
- Department of Thermal Science and Energy Engineering, University of Science and Technology of China Hefei 230026 China
| | - Yao Lin
- Department of Thermal Science and Energy Engineering, University of Science and Technology of China Hefei 230026 China
| | - Zerui Wu
- Department of Thermal Science and Energy Engineering, University of Science and Technology of China Hefei 230026 China
| | - Zida Li
- Department of Biomedical Engineering, Medical School, Shenzhen University Shenzhen 518060 China
| | - Xuemei He
- Department of Hematology, The First Affiliated Hospital of University of Science and Technology of China Hefei 230001 China
| | - Yun Wu
- Department of Hematology, The First Affiliated Hospital of University of Science and Technology of China Hefei 230001 China
| | - Zimin Sun
- Department of Hematology, The First Affiliated Hospital of University of Science and Technology of China Hefei 230001 China
| | - Weiping Ding
- Department of Electronic Engineering and Information Science, University of Science and Technology of China Hefei 230026 China
| | - Liqun He
- Department of Thermal Science and Energy Engineering, University of Science and Technology of China Hefei 230026 China
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7
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Sugar A, Serag M, Buttner U, Habuchi S, Hoteit H. A single-molecule study on polymer fluid dynamics in porous media. LAB ON A CHIP 2023; 23:4104-4116. [PMID: 37655457 DOI: 10.1039/d3lc00467h] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/02/2023]
Abstract
Understanding the dynamic behavior of polymeric fluids in porous media is essential for vast geoscience applications, particularly enhanced oil recovery and polymer-enhanced soil washing, to clean up soil contamination. During the past decades, the behavior of polymeric fluids in microscopic space has only been investigated using ensemble-averaged experimental methods in which a bulk phase behavior of the fluids characterizes flow mechanisms. Multiple flow mechanisms have been proposed based on ensemble-averaged data; however, microscale characterization of the interactions between polymers and solid surfaces and the mechanisms governing polymer retention and permeability reduction as well as the reversibility of polymer retention are lacking, resulting in a limited understanding of the flow mechanisms. Here we report direct visualization and multi-scale characterization of the dynamic behavior of polymer molecules in a representative porous medium by integrating microfluidics with single-molecule imaging. We demonstrate that the polymers' adsorption, entrapment and hydrodynamic retention contribute to their overall retention in porous media. Our study illustrates how microfluidics can help in understanding the dynamic behavior of polymers, their interactions with the solid/fluid interface and their effects on flow properties. Additionally, it demonstrates the role of microfluidic platforms in providing a more representative and accurate model for polymer retention and permeability reduction in porous media. The obtained insights encourage the development of improved models that better capture the behavior of complex fluids in confined environments and have significant implications for a wide range of applications in geoscience, materials science, and rheology.
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Affiliation(s)
- Antonia Sugar
- Physical Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
| | - Maged Serag
- Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.
| | - Ulrich Buttner
- Nanofabrication Core Lab, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
| | - Satoshi Habuchi
- Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.
| | - Hussein Hoteit
- Physical Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
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8
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Cha H, Dai Y, Hansen HHWB, Ouyang L, Chen X, Kang X, An H, Ta HT, Nguyen NT, Zhang J. Asymmetrical Obstacles Enable Unilateral Inertial Focusing and Separation in Sinusoidal Microchannel. CYBORG AND BIONIC SYSTEMS 2023; 4:0036. [PMID: 37342212 PMCID: PMC10278993 DOI: 10.34133/cbsystems.0036] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2023] [Accepted: 05/25/2023] [Indexed: 06/22/2023] Open
Abstract
Inertial microfluidics uses the intrinsic fluid inertia in confined channels to manipulate the particles and cells in a simple, high-throughput, and precise manner. Inertial focusing in a straight channel results in several equilibrium positions within the cross sections. Introducing channel curvature and adjusting the cross-sectional aspect ratio and shape can modify inertial focusing positions and can reduce the number of equilibrium positions. In this work, we introduce an innovative way to adjust the inertial focusing and reduce equilibrium positions by embedding asymmetrical obstacle microstructures. We demonstrated that asymmetrical concave obstacles could break the symmetry of original inertial focusing positions, resulting in unilateral focusing. In addition, we characterized the influence of obstacle size and 3 asymmetrical obstacle patterns on unilateral inertial focusing. Finally, we applied differential unilateral focusing on the separation of 10- and 15-μm particles and isolation of brain cancer cells (U87MG) from white blood cells (WBCs), respectively. The results indicated an excellent cancer cell recovery of 96.4% and WBC rejection ratio of 98.81%. After single processing, the purity of the cancer cells was dramatically enhanced from 1.01% to 90.13%, with an 89.24-fold enrichment. We believe that embedding asymmetric concave micro-obstacles is a new strategy to achieve unilateral inertial focusing and separation in curved channels.
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Affiliation(s)
- Haotian Cha
- Queensland Micro- and Nanotechnology Centre, Griffith University, Nathan, Queensland 4111, Australia
| | - Yuchen Dai
- Queensland Micro- and Nanotechnology Centre, Griffith University, Nathan, Queensland 4111, Australia
| | - Helena H. W. B. Hansen
- Queensland Micro- and Nanotechnology Centre, Griffith University, Nathan, Queensland 4111, Australia
| | - Lingxi Ouyang
- Queensland Micro- and Nanotechnology Centre, Griffith University, Nathan, Queensland 4111, Australia
| | - Xiangxun Chen
- Queensland Micro- and Nanotechnology Centre, Griffith University, Nathan, Queensland 4111, Australia
| | - Xiaoyue Kang
- School of Engineering, University of Tasmania, Churchill Avenue, Tasmania 7005, Australia
| | - Hongjie An
- Queensland Micro- and Nanotechnology Centre, Griffith University, Nathan, Queensland 4111, Australia
| | - Hang Thu Ta
- Queensland Micro- and Nanotechnology Centre, Griffith University, Nathan, Queensland 4111, Australia
- Bioscience Discipline, School of Environment and Science, Griffith University, Nathan, Queensland 4111, Australia
| | - Nam-Trung Nguyen
- Queensland Micro- and Nanotechnology Centre, Griffith University, Nathan, Queensland 4111, Australia
| | - Jun Zhang
- Queensland Micro- and Nanotechnology Centre, Griffith University, Nathan, Queensland 4111, Australia
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9
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Sun H, Xie W, Mo J, Huang Y, Dong H. Deep learning with microfluidics for on-chip droplet generation, control, and analysis. Front Bioeng Biotechnol 2023; 11:1208648. [PMID: 37351472 PMCID: PMC10282949 DOI: 10.3389/fbioe.2023.1208648] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2023] [Accepted: 05/25/2023] [Indexed: 06/24/2023] Open
Abstract
Droplet microfluidics has gained widespread attention in recent years due to its advantages of high throughput, high integration, high sensitivity and low power consumption in droplet-based micro-reaction. Meanwhile, with the rapid development of computer technology over the past decade, deep learning architectures have been able to process vast amounts of data from various research fields. Nowadays, interdisciplinarity plays an increasingly important role in modern research, and deep learning has contributed greatly to the advancement of many professions. Consequently, intelligent microfluidics has emerged as the times require, and possesses broad prospects in the development of automated and intelligent devices for integrating the merits of microfluidic technology and artificial intelligence. In this article, we provide a general review of the evolution of intelligent microfluidics and some applications related to deep learning, mainly in droplet generation, control, and analysis. We also present the challenges and emerging opportunities in this field.
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Affiliation(s)
- Hao Sun
- School of Mechanical Engineering and Automation, Fuzhou University, Fuzhou, China
- Fujian Provincial Collaborative Innovation Center of High-End Equipment Manufacturing, Fuzhou, China
| | - Wantao Xie
- School of Mechanical Engineering and Automation, Fuzhou University, Fuzhou, China
- Fujian Provincial Collaborative Innovation Center of High-End Equipment Manufacturing, Fuzhou, China
| | - Jin Mo
- School of Mechanical Engineering and Automation, Fuzhou University, Fuzhou, China
- Fujian Provincial Collaborative Innovation Center of High-End Equipment Manufacturing, Fuzhou, China
| | - Yi Huang
- Centre for Experimental Research in Clinical Medicine, Fujian Provincial Hospital, Fuzhou, China
| | - Hui Dong
- School of Mechanical Engineering and Automation, Fuzhou University, Fuzhou, China
- Fujian Provincial Collaborative Innovation Center of High-End Equipment Manufacturing, Fuzhou, China
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Chen C, Li P, Guo T, Chen S, Xu D, Chen H. Generation of Dynamic Concentration Profile Using A Microfluidic Device Integrating Pneumatic Microvalves. BIOSENSORS 2022; 12:bios12100868. [PMID: 36291005 PMCID: PMC9599525 DOI: 10.3390/bios12100868] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/30/2022] [Revised: 10/08/2022] [Accepted: 10/09/2022] [Indexed: 06/12/2023]
Abstract
Generating and maintaining the concentration dilutions of diffusible molecules in microchannels is critical for high-throughput chemical and biological analysis. Conventional serial network microfluidic technologies can generate high orders of arbitrary concentrations by a predefined microchannel network. However, a previous design requires a large occupancy area and is unable to dynamically generate different profiles in the same chip, limiting its applications. This study developed a microfluidic device enabling dynamic variations of both the concentration in the same channel and the concentration distribution in multiple channels by adjusting the flow resistance using programmable pneumatic microvalves. The key component (the pneumatic microvalve) allowed dynamic adjustment of the concentration profile but occupied a tiny space. Additionally, a Matlab program was developed to calculate the flow rates and flow resistance of various sections of the device, which provided theoretical guidance for dimension design. In silico investigations were conducted to evaluate the microvalve deformation with widths from 100 to 300 µm and membrane thicknesses of 20 and 30 µm under the activation pressures between 0 and 2000 mbar. The flow resistance of the deformed valve was studied both numerically and experimentally and an empirical model for valve flow resistance with the form of Rh=aebP was proposed. Afterward, the fluid flow in the valve region was characterized using Micro PIV to further demonstrate the adjustment mechanism of the flow resistance. Then, the herringbone structures were employed for fast mixing to allow both quick variation of concentration and minor space usage of the channel network. Finally, an empirical formula-supported computational program was developed to provide the activation pressures required for the specific concentration profile. Both linear (Ck = -0.2k + 1) and nonlinear (Ck = (110)k) concentration distribution in four channels were varied using the same device by adjusting microvalves. The device demonstrated the capability to control the concentration profile dynamically in a small space, offering superior application potentials in analytical chemistry, drug screening, and cell biology research.
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Affiliation(s)
- Chang Chen
- School of Mechanical Engineering and Automation, Harbin Institute of Technology, Shenzhen 518055, China
| | - Panpan Li
- School of Science, Harbin Institute of Technology, Shenzhen 518055, China
| | - Tianruo Guo
- Graduate School of Biomedical Engineering, The University of New South Wales, Sydney, NSW 2052, Australia
| | - Siyuan Chen
- School of Science, Harbin Institute of Technology, Shenzhen 518055, China
| | - Dong Xu
- School of Science, Harbin Institute of Technology, Shenzhen 518055, China
| | - Huaying Chen
- School of Mechanical Engineering and Automation, Harbin Institute of Technology, Shenzhen 518055, China
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11
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Li M, Li D, Song Y, Li D. Tunable particle/cell separation across aqueous two-phase system interface by electric pulse in microfluidics. J Colloid Interface Sci 2022; 612:23-34. [PMID: 34974255 DOI: 10.1016/j.jcis.2021.12.140] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2021] [Revised: 12/10/2021] [Accepted: 12/21/2021] [Indexed: 01/16/2023]
Abstract
HYPOTHESIS Separations of particles and cells are indispensable in many microfluidic systems and have numerous applications in chemistry and biomedicine. The interface of aqueous two-phase system (ATPS) can act as a liquid filter. Under electric field stimuli, the selective transfer of targets across the liquid-liquid interface are expected for particles and cells separation. EXPERIMENTS The separations of particles and cells based on ATPS electrophoresis in a microfluidic chip were investigated. A systematical study of the mechanism of ATPS electrophoresis was performed first by employing polystyrene (PS) particles. Subsequently, the separations of particles and microalgae cells were demonstrated. FINDINGS The electrophoretic transfer of particles across the interface of ATPS is determined by multi-parameters, including the strength of electric pulse, particle size, zeta potential, and hydrophobicity of the particle. The continuous separations of particles/cells can be achieved through the controllable transfer of target particles/cells across the interface under electric pulses in a microfluidic chip. By simply turning the magnitude of the applied electric pulse, the technique is suitable for different purposes, for example, the separations of particles and cells, purification of cells, and viability identification of cells. This tunable separation approach opens opportunities in multidimensional particle and cell sorting for the fields of seed selection of microorganisms, environmental assessment, and biomedical research.
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Affiliation(s)
- Mengqi Li
- Department of Marine Engineering, Dalian Maritime University, Dalian 116026, China
| | - Deyu Li
- Department of Marine Engineering, Dalian Maritime University, Dalian 116026, China
| | - Yongxin Song
- Department of Marine Engineering, Dalian Maritime University, Dalian 116026, China
| | - Dongqing Li
- Department of Mechanical and Mechatronics Engineering, University of Waterloo, Waterloo, Ontario, Canada N2L 3G1.
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12
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Taylor DP, Mathur P, Renaud P, Kaigala GV. Microscale hydrodynamic confinements: shaping liquids across length scales as a toolbox in life sciences. LAB ON A CHIP 2022; 22:1415-1437. [PMID: 35348555 DOI: 10.1039/d1lc01101d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Hydrodynamic phenomena can be leveraged to confine a range of biological and chemical species without needing physical walls. In this review, we list methods for the generation and manipulation of microfluidic hydrodynamic confinements in free-flowing liquids and near surfaces, and elucidate the associated underlying theory and discuss their utility in the emerging area of open space microfluidics applied to life-sciences. Microscale hydrodynamic confinements are already starting to transform approaches in fundamental and applied life-sciences research from precise separation and sorting of individual cells, allowing localized bio-printing to multiplexing for clinical diagnosis. Through the choice of specific flow regimes and geometrical boundary conditions, hydrodynamic confinements can confine species across different length scales from small molecules to large cells, and thus be applied to a wide range of functionalities. We here provide practical examples and implementations for the formation of these confinements in different boundary conditions - within closed channels, in between parallel plates and in an open liquid volume. Further, to enable non-microfluidics researchers to apply hydrodynamic flow confinements in their work, we provide simplified instructions pertaining to their design and modelling, as well as to the formation of hydrodynamic flow confinements in the form of step-by-step tutorials and analytical toolbox software. This review is written with the idea to lower the barrier towards the use of hydrodynamic flow confinements in life sciences research.
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Affiliation(s)
- David P Taylor
- IBM Research - Europe, Säumerstrasse 4, 8803 Rüschlikon, Switzerland.
- Microsystems Laboratory 4, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | - Prerit Mathur
- IBM Research - Europe, Säumerstrasse 4, 8803 Rüschlikon, Switzerland.
- Dept. of Chemistry and Applied Biosciences, Eidgenössische Technische Hochschule (ETH), Vladimir-Prelog-Weg 1-5/10, 8093 Zurich, Switzerland
| | - Philippe Renaud
- Microsystems Laboratory 4, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | - Govind V Kaigala
- IBM Research - Europe, Säumerstrasse 4, 8803 Rüschlikon, Switzerland.
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13
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Shiri F, Feng H, Petersen KE, Sant H, Bardi GT, Schroeder LA, Merchant ML, Gale BK, Hood JL. Separation of U87 glioblastoma cell-derived small and medium extracellular vesicles using elasto-inertial flow focusing (a spiral channel). Sci Rep 2022; 12:6146. [PMID: 35414673 PMCID: PMC9005724 DOI: 10.1038/s41598-022-10129-8] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2021] [Accepted: 04/01/2022] [Indexed: 11/09/2022] Open
Abstract
Nanoscale and microscale cell-derived extracellular vesicle types and subtypes are of significant interest to researchers in biology and medicine. Extracellular vesicles (EVs) have diagnostic and therapeutic potential in terms of biomarker and nanomedicine applications. To enable such applications, EVs must be isolated from biological fluids or separated from other EV types. Developing methods to fractionate EVs is of great importance to EV researchers. Our goal was to begin to develop a device that would separate medium EVs (mEVs, traditionally termed microvesicles or shedding vesicles) and small EVs (sEVs, traditionally termed exosomes) by elasto-inertial effect. We sought to develop a miniaturized technology that works similar to and provides the benefits of differential ultracentrifugation but is more suitable for EV-based microfluidic applications. The aim of this study was to determine whether we could use elasto-inertial focusing to re-isolate and recover U87 mEVs and sEVs from a mixture of mEVs and sEVs isolated initially by one round of differential ultracentrifugation. The studied spiral channel device can continuously process 5 ml of sample fluid per hour. Using the channel, sEVs and mEVs were recovered and re-isolated from a mixture of U87 glioma cell-derived mEVs and sEVs pre-isolated by one round of differential ultracentrifugation. Following two passes through the spiral channel, approximately 55% of sEVs were recovered with 6% contamination by mEVs (the recovered sEVs contained 6% of the total mEVs). In contrast, recovery of U87 mEVs and sEVs re-isolated using a typical second centrifugation wash step was only 8% and 53%, respectively. The spiral channel also performed similar to differential ultracentrifugation in reisolating sEVs while significantly improving mEV reisolation from a mixture of U87 sEVs and mEVs. Ultimately this technology can also be coupled to other microfluidic EV isolation methods in series and/or parallel to improve isolation and minimize loss of EV subtypes.
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Affiliation(s)
- Farhad Shiri
- Department of Mechanical Engineering, University of Utah, Salt Lake City, UT, 84112, USA.
| | - Haidong Feng
- Department of Mechanical Engineering, University of Utah, Salt Lake City, UT, 84112, USA
| | - Kevin E Petersen
- Department of Mechanical Engineering, University of Utah, Salt Lake City, UT, 84112, USA
| | - Himanshu Sant
- Department of Mechanical Engineering, University of Utah, Salt Lake City, UT, 84112, USA
| | - Gina T Bardi
- Department of Pharmacology and Toxicology, School of Medicine, University of Louisville, Louisville, KY, 40202, USA
| | - Luke A Schroeder
- Department of Pharmacology and Toxicology, School of Medicine, University of Louisville, Louisville, KY, 40202, USA
| | - Michael L Merchant
- Division of Nephrology and Hypertension, Department of Medicine, University of Louisville, Louisville, KY, 40202, USA
| | - Bruce K Gale
- Department of Mechanical Engineering, University of Utah, Salt Lake City, UT, 84112, USA.
| | - Joshua L Hood
- Department of Pharmacology and Toxicology, School of Medicine, University of Louisville, Louisville, KY, 40202, USA.
- Brown Cancer Center, University of Louisville, Louisville, KY, 40202, USA.
- Hepatobiology and Toxicology COBRE, University of Louisville, Louisville, KY, 40202, USA.
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14
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Zhu P, Wang L. Microfluidics-Enabled Soft Manufacture of Materials with Tailorable Wettability. Chem Rev 2021; 122:7010-7060. [PMID: 34918913 DOI: 10.1021/acs.chemrev.1c00530] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
Microfluidics and wettability are interrelated and mutually reinforcing fields, experiencing synergistic growth. Surface wettability is paramount in regulating microfluidic flows for processing and manipulating fluids at the microscale. Microfluidics, in turn, has emerged as a versatile platform for tailoring the wettability of materials. We present a critical review on the microfluidics-enabled soft manufacture (MESM) of materials with well-controlled wettability and their multidisciplinary applications. Microfluidics provides a variety of liquid templates for engineering materials with exquisite composition and morphology, laying the foundation for precisely controlling the wettability. Depending on the degree of ordering, liquid templates are divided into individual droplets, one-dimensional (1D) arrays, and two-dimensional (2D) or three-dimensional (3D) assemblies for the modular fabrication of microparticles, microfibers, and monolithic porous materials, respectively. Future exploration of MESM will enrich the diversity of chemical composition and physical structure for wettability control and thus markedly broaden the application horizons across engineering, physics, chemistry, biology, and medicine. This review aims to systematize this emerging yet robust technology, with the hope of aiding the realization of its full potential.
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Affiliation(s)
- Pingan Zhu
- Department of Mechanical Engineering, City University of Hong Kong, Hong Kong, China
| | - Liqiu Wang
- Department of Mechanical Engineering, The University of Hong Kong, Hong Kong, China
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15
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Antognoli M, Stoecklein D, Galletti C, Brunazzi E, Di Carlo D. Optimized design of obstacle sequences for microfluidic mixing in an inertial regime. LAB ON A CHIP 2021; 21:3910-3923. [PMID: 34636817 DOI: 10.1039/d1lc00483b] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Mixing is a basic but challenging step to achieve in high throughput microfluidic applications such as organic synthesis or production of particles. A common approach to improve micromixer performance is to devise a single component that enhances mixing through optimal convection, and then sequence multiple such units back-to-back to enhance overall mixing at the end of the sequence. However, the mixing units are often optimized only for the initial non-mixed fluid composition, which is no longer the input condition for each subsequent unit. Thus, there is no guarantee that simply repeating a single mixing unit will achieve optimally mixed fluid flow at the end of the sequence. In this work, we analyzed sequences of 20 cylindrical obstacles, or pillars, to optimize the mixing in the inertial regime (where mixing is more difficult due to higher Péclet number) by managing their interdependent convection operations on the composition of the fluid. Exploiting a software for microfluidic design optimization called FlowSculpt, we predicted and optimized the interfacial stretching of two co-flowing fluids, neglecting diffusive effects. We were able to quickly design three different optimal pillar sequences through a space of 3220 possible combinations of pillars. As proof of concept, we tested the new passive mixer designs using confocal microscopy and full 3D CFD simulations for high Péclet numbers (Pe ≈ O(105-6)), observing fluid flow shape and mixing index at several cross-sections, reaching mixing efficiencies around 80%. Furthermore, we investigated the effect of the inter-pillar spacing on the most optimal design, quantifying the tradeoff between mixing performance and hydraulic resistance. These micromixer designs and the framework for the design in inertial regimes can be used for various applications, such as lipid nanoparticle fabrication which has been of great importance in vaccine scale up during the pandemic.
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Affiliation(s)
- Matteo Antognoli
- Dipartimento di Ingegneria Civile e Industriale, University of Pisa, Pisa 56122, Italy
| | - Daniel Stoecklein
- Department of Mechanical Engineering, Rose-Hulman Institute of Technology, Terre Haute, IN, 47803, USA
| | - Chiara Galletti
- Dipartimento di Ingegneria Civile e Industriale, University of Pisa, Pisa 56122, Italy
| | - Elisabetta Brunazzi
- Dipartimento di Ingegneria Civile e Industriale, University of Pisa, Pisa 56122, Italy
| | - Dino Di Carlo
- Department of Bioengineering, University of California, Los Angeles, CA, 90055, USA.
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16
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Zhang H, Ładosz A, Jensen KF. Design and operation of an enhanced pervaporation device with static mixers. AIChE J 2021. [DOI: 10.1002/aic.17455] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Haomiao Zhang
- State Key Laboratory of Chemical Engineering, College of Chemical and Biological Engineering Zhejiang University Hangzhou China
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Agnieszka Ładosz
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Klavs F. Jensen
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
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17
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Ghadiri MM, Hosseini SA, Sadatsakkak SA, Rajabpour A. Inertial microfluidics: Determining the effect of geometric key parameters on capture efficiency along with a feasibility evaluation for bone marrow cells sorting. Biomed Microdevices 2021; 23:41. [PMID: 34379212 DOI: 10.1007/s10544-021-00577-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/29/2021] [Indexed: 11/29/2022]
Abstract
Despite great developments in inertial microfluidics, there is still a lack of knowledge to precisely define the particles' behavior in the microchannels. In the present study, as a prerequisite to experimental studies, numerical simulations have been used to study the capture efficiency of target particles in the contraction-expansion microchannel, aiming to provide an estimation of the conditions at which the channel performs best. Fluid analysis based on Navier-Stokes equations is conducted using the finite element method to determine the streamlines and vortices. The highest capture efficiency for 10, 15, and 19-micron particles occurs when the center of the vortex is approximately in the middle of the wide section (at the flow rate of 0.35 ml/min). In addition to investigating the effect of particle diameter and input flow rate, the effect of channel geometry parameters (channel height and initial length of the channel) on particle trapping has also been studied. Also, to consider great interest in separating different-sized bioparticles from a sample, a three-stage platform has been designed to separate four types of bone marrow cells and evaluate the possibility of using contraction-expansion channels in this application.
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Affiliation(s)
- Mohammad Mahdi Ghadiri
- Department of Mechanical Engineering, Imam Khomeini International University, Qazvin, Iran
| | - Seied Ali Hosseini
- Department of Electrical Engineering, Imam Khomeini International University, Qazvin, Iran.
| | | | - Ali Rajabpour
- Department of Mechanical Engineering, Imam Khomeini International University, Qazvin, Iran
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18
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Hymel SJ, Fujioka H, Khismatullin DB. Modeling of Deformable Cell Separation in a Microchannel with Sequenced Pillars. ADVANCED THEORY AND SIMULATIONS 2021. [DOI: 10.1002/adts.202100086] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Scott J. Hymel
- Department of Biomedical Engineering Tulane University New Orleans LA 70118 USA
| | - Hideki Fujioka
- Center for Computational Science Tulane University New Orleans LA 70118 USA
| | - Damir B. Khismatullin
- Department of Biomedical Engineering Tulane University New Orleans LA 70118 USA
- Center for Computational Science Tulane University New Orleans LA 70118 USA
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19
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He X, Wang B, Meng J, Zhang S, Wang S. How to Prevent Bubbles in Microfluidic Channels. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2021; 37:2187-2194. [PMID: 33528259 DOI: 10.1021/acs.langmuir.0c03514] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
Microfluidic technology has aroused wide applications, including analytical science, diagnostic technology, and micro-/nanofabrication. However, bubbles in microfluidic channels always bring out adverse impacts such as cell damage and device malfunction. To prevent bubble formation, numerical simulation and experiments were integrated to reveal the effect of the factors including the internal structure of the channel, internal wettability, and liquid flow rate. On one hand, the simulation results reveal that bubble formation can be prevented by these mentioned factors, the weight of which can be provided by a logistic regression model. In addition, the raised equilibrium equations can efficiently explain the influence of these factors on bubble prevention. On the other hand, the validity of the simulation was further verified by the prevention of bubbles in the water-flowing microchannels. Therefore, this work provides a promising strategy to prevent bubble formation in microchannels, which has wide applications in microfluidic systems.
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Affiliation(s)
- Xiao He
- CAS Key Laboratory of Bio-Inspired Materials and Interfacial Science, CAS Center for Excellence in Nanoscience, Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Beijing 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Binshuai Wang
- Department of Urology, Peking University Third Hospital, Beijing 100191, P. R. China
| | - Jingxin Meng
- CAS Key Laboratory of Bio-Inspired Materials and Interfacial Science, CAS Center for Excellence in Nanoscience, Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Beijing 100190, P. R. China
| | - Shudong Zhang
- Department of Urology, Peking University Third Hospital, Beijing 100191, P. R. China
| | - Shutao Wang
- CAS Key Laboratory of Bio-Inspired Materials and Interfacial Science, CAS Center for Excellence in Nanoscience, Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Beijing 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, P. R. China
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20
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Cai Z, Huang Z, Li Z, Su M, Zhao Z, Qin F, Zhang Z, Yang J, Song Y. Evaporation Induced Spontaneous Micro‐Vortexes through Engineering of the Marangoni Flow. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202008477] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Zheren Cai
- Key Laboratory of Green Printing Institute of Chemistry Chinese Academy of Sciences (ICCAS) Beijing Engineering Research Center of Nanomaterials for Green Printing Technology National Laboratory for Molecular Sciences (BNLMS) Beijing 100190 P. R. China
- University of Chinese Academy of Sciences Beijing 100049 P. R. China
| | - Zhandong Huang
- Department of Mechanical and Materials Engineering The University of Western Ontario London Ontario N6A 5B9 Canada
| | - Zheng Li
- Key Laboratory of Green Printing Institute of Chemistry Chinese Academy of Sciences (ICCAS) Beijing Engineering Research Center of Nanomaterials for Green Printing Technology National Laboratory for Molecular Sciences (BNLMS) Beijing 100190 P. R. China
| | - Meng Su
- Key Laboratory of Green Printing Institute of Chemistry Chinese Academy of Sciences (ICCAS) Beijing Engineering Research Center of Nanomaterials for Green Printing Technology National Laboratory for Molecular Sciences (BNLMS) Beijing 100190 P. R. China
| | - Zhipeng Zhao
- Key Laboratory of Green Printing Institute of Chemistry Chinese Academy of Sciences (ICCAS) Beijing Engineering Research Center of Nanomaterials for Green Printing Technology National Laboratory for Molecular Sciences (BNLMS) Beijing 100190 P. R. China
- University of Chinese Academy of Sciences Beijing 100049 P. R. China
| | - Feifei Qin
- Chair of Building Physics Department of Mechanical and Process Engineering ETH Zürich (Swiss Federal Institute of Technology in Zürich) Zürich 8092 Switzerland
| | - Zeying Zhang
- Key Laboratory of Green Printing Institute of Chemistry Chinese Academy of Sciences (ICCAS) Beijing Engineering Research Center of Nanomaterials for Green Printing Technology National Laboratory for Molecular Sciences (BNLMS) Beijing 100190 P. R. China
- University of Chinese Academy of Sciences Beijing 100049 P. R. China
| | - Jun Yang
- Department of Mechanical and Materials Engineering The University of Western Ontario London Ontario N6A 5B9 Canada
| | - Yanlin Song
- Key Laboratory of Green Printing Institute of Chemistry Chinese Academy of Sciences (ICCAS) Beijing Engineering Research Center of Nanomaterials for Green Printing Technology National Laboratory for Molecular Sciences (BNLMS) Beijing 100190 P. R. China
- University of Chinese Academy of Sciences Beijing 100049 P. R. China
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21
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Cai Z, Huang Z, Li Z, Su M, Zhao Z, Qin F, Zhang Z, Yang J, Song Y. Evaporation Induced Spontaneous Micro‐Vortexes through Engineering of the Marangoni Flow. Angew Chem Int Ed Engl 2020; 59:23684-23689. [DOI: 10.1002/anie.202008477] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2020] [Revised: 08/27/2020] [Indexed: 12/11/2022]
Affiliation(s)
- Zheren Cai
- Key Laboratory of Green Printing Institute of Chemistry Chinese Academy of Sciences (ICCAS) Beijing Engineering Research Center of Nanomaterials for Green Printing Technology National Laboratory for Molecular Sciences (BNLMS) Beijing 100190 P. R. China
- University of Chinese Academy of Sciences Beijing 100049 P. R. China
| | - Zhandong Huang
- Department of Mechanical and Materials Engineering The University of Western Ontario London Ontario N6A 5B9 Canada
| | - Zheng Li
- Key Laboratory of Green Printing Institute of Chemistry Chinese Academy of Sciences (ICCAS) Beijing Engineering Research Center of Nanomaterials for Green Printing Technology National Laboratory for Molecular Sciences (BNLMS) Beijing 100190 P. R. China
| | - Meng Su
- Key Laboratory of Green Printing Institute of Chemistry Chinese Academy of Sciences (ICCAS) Beijing Engineering Research Center of Nanomaterials for Green Printing Technology National Laboratory for Molecular Sciences (BNLMS) Beijing 100190 P. R. China
| | - Zhipeng Zhao
- Key Laboratory of Green Printing Institute of Chemistry Chinese Academy of Sciences (ICCAS) Beijing Engineering Research Center of Nanomaterials for Green Printing Technology National Laboratory for Molecular Sciences (BNLMS) Beijing 100190 P. R. China
- University of Chinese Academy of Sciences Beijing 100049 P. R. China
| | - Feifei Qin
- Chair of Building Physics Department of Mechanical and Process Engineering ETH Zürich (Swiss Federal Institute of Technology in Zürich) Zürich 8092 Switzerland
| | - Zeying Zhang
- Key Laboratory of Green Printing Institute of Chemistry Chinese Academy of Sciences (ICCAS) Beijing Engineering Research Center of Nanomaterials for Green Printing Technology National Laboratory for Molecular Sciences (BNLMS) Beijing 100190 P. R. China
- University of Chinese Academy of Sciences Beijing 100049 P. R. China
| | - Jun Yang
- Department of Mechanical and Materials Engineering The University of Western Ontario London Ontario N6A 5B9 Canada
| | - Yanlin Song
- Key Laboratory of Green Printing Institute of Chemistry Chinese Academy of Sciences (ICCAS) Beijing Engineering Research Center of Nanomaterials for Green Printing Technology National Laboratory for Molecular Sciences (BNLMS) Beijing 100190 P. R. China
- University of Chinese Academy of Sciences Beijing 100049 P. R. China
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22
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Guzniczak E, Krüger T, Bridle H, Jimenez M. Limitation of spiral microchannels for particle separation in heterogeneous mixtures: Impact of particles' size and deformability. BIOMICROFLUIDICS 2020; 14:044113. [PMID: 32831986 PMCID: PMC7419160 DOI: 10.1063/5.0009673] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2020] [Accepted: 06/11/2020] [Indexed: 05/12/2023]
Abstract
Spiral microchannels have shown promising results for separation applications. Hydrodynamic particle-particle interactions are a known factor strongly influencing focusing behaviors in inertial devices, with recent work highlighting how the performance of bidisperse mixtures is altered when compared with pure components in square channels. This phenomenon has not been previously investigated in detail for spiral channels. Here, we demonstrate that, in spiral channels, both the proportion and deformability of larger particles (13 μm diameter) impact upon the recovery (up to 47% decrease) of small rigid particles (4 μm). The effect, observed at low concentrations (volume fraction <0.0012), is attributed to the hydrodynamic capture of beads by larger cells. These changes in particles focusing behavior directly impede the efficiency of the separation-diverting beads from locations expected from measurements with pure populations to co-collection with larger cells-and could hamper deployment of technology for certain applications. Similar focusing behavior alterations were noted when working with purification of stem cell end products.
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Affiliation(s)
- Ewa Guzniczak
- Department of Biological Chemistry, Biophysics and Bioengineering, School of Engineering and Physical Science, Heriot-Watt University, Edinburgh EH14 4AS, Scotland
| | - Timm Krüger
- School of Engineering, Institute for Multiscale Thermofluids, University of Edinburgh, Edinburgh EH9 3FB, Scotland
| | - Helen Bridle
- Department of Biological Chemistry, Biophysics and Bioengineering, School of Engineering and Physical Science, Heriot-Watt University, Edinburgh EH14 4AS, Scotland
- Author to whom correspondence should be addressed:
| | - Melanie Jimenez
- Biomedical Engineering Division, James Watt School of Engineering, University of Glasgow, Glasgow G12 8LT, United Kingdom
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23
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Li Y, Fischer R, Zboray R, Boillat P, Camenzind M, Toncelli C, Rossi RM. Laser-Engraved Textiles for Engineering Capillary Flow and Application in Microfluidics. ACS APPLIED MATERIALS & INTERFACES 2020; 12:29908-29916. [PMID: 32506905 DOI: 10.1021/acsami.0c03988] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Steering capillary flow in textiles is of great significance in developing affordable and portable microfluidics devices. However, owing to the complex fibrous network, it remains a great challenge to achieve capillary flows with precise filling fronts. Here, an in situ laser engraving route is reported to accurately and rapidly etch textiles for manipulating capillary flow. The heterogeneity of the textile structure is enhanced because of the directional spreading of molten fibers polymer under the control of surface energy minimization. The principle of achieved anisotropic wicking of a water droplet in laser-engraved textiles is proposed. This understanding enables patterning the filling front of a fluid in different shapes, including arrow, straight line, diamond, and annulus. Precise capillary flow in textile-based microfluidics can benefit application in many fields, such as chemical analysis, biological detection, materials synthesis, multiliquid delivery. The laser engraving strategy has the advantages of simplicity, full scalability, and time rapidity, which provides an efficient avenue to steer capillary flow in diverse textiles for manufacturing customized microfluidic devices.
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Affiliation(s)
- Yifan Li
- Laboratory for Biomimetic Membranes & Textiles, Empa, Swiss Federal Laboratories for Materials Science and Technology, St. Gallen 9014, Switzerland
| | - Robert Fischer
- Laboratory for Biomimetic Membranes & Textiles, Empa, Swiss Federal Laboratories for Materials Science and Technology, St. Gallen 9014, Switzerland
- Chair of Building Physics, ETH Zürich, Swiss Federal Institute of Technology, Zurich 8092, Switzerland
- Laboratory for Multiscale Studies in Building Physics, Empa, Swiss Federal Laboratories for Materials Science and Technology, Dübendorf 8600, Switzerland
| | - Robert Zboray
- Centers for X-ray Analytics, Empa, Swiss Federal Laboratories for Materials Science and Technology, Dübendorf 8600, Switzerland
| | - Pierre Boillat
- Laboratory for Neutron Scattering and Imaging, Paul Scherrer Institute, Villigen PSI 5232, Switzerland
| | - Martin Camenzind
- Laboratory for Biomimetic Membranes & Textiles, Empa, Swiss Federal Laboratories for Materials Science and Technology, St. Gallen 9014, Switzerland
| | - Claudio Toncelli
- Laboratory for Biomimetic Membranes & Textiles, Empa, Swiss Federal Laboratories for Materials Science and Technology, St. Gallen 9014, Switzerland
| | - Rene M Rossi
- Laboratory for Biomimetic Membranes & Textiles, Empa, Swiss Federal Laboratories for Materials Science and Technology, St. Gallen 9014, Switzerland
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24
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Liu P, Ming D, Lin B. Research on removal function of fluid hydrodynamic fixed abrasive grinding. J Adv Res 2020; 24:397-408. [PMID: 32509346 PMCID: PMC7264764 DOI: 10.1016/j.jare.2020.05.023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2019] [Revised: 04/28/2020] [Accepted: 05/20/2020] [Indexed: 10/25/2022] Open
Abstract
Fluid hydrodynamic fixed abrasive grinding (FHFAG) is now evolving into a promising finishing method underpinning the major advances across grinding and lapping sciences. While the advances have been startling, the key unmet challenge to date is the theoretical basis of removal function. Here, we approach this challenge by presenting a fully coupled flow deformation model. Given the separation function on microchannel from the grits fixed on the grinding pad, hydrodynamic pressure distribution with many dynamic pressure peaks and basic film thickness can be described theoretically. Combining with primary material removal mechanism the removal function of FHFAG was achieved. The experimental results showed a strong agreement with the prediction removal function model and its practicability has also been verified.
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Affiliation(s)
- Pengfei Liu
- Tianjin International Joint Research Center for Neural Engineering, Academy of Medical Engineering and Translational Medicine, Tianjin University, 300072 Tianjin, PR China
| | - Dong Ming
- Tianjin International Joint Research Center for Neural Engineering, Academy of Medical Engineering and Translational Medicine, Tianjin University, 300072 Tianjin, PR China
| | - Bin Lin
- Key Laboratory of Advanced Ceramics and Machining Technology, Ministry of Education, Tianjin University, 300070 Tianjin, PR China
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25
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Taylor DP, Kaigala GV. Reconfigurable microfluidics: real-time shaping of virtual channels through hydrodynamic forces. LAB ON A CHIP 2020; 20:1720-1728. [PMID: 32253402 DOI: 10.1039/d0lc00197j] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
To break the current paradigm in microfluidics that directly links device design to functionality, we introduce microfluidic "virtual channels" that can be dynamically shaped in real-time. A virtual channel refers to a flow path within a microfluidic flow cell, guiding an injected reagent along a user-defined trajectory solely by hydrodynamic forces. Virtual channels dynamically reproduce key microfluidic functionality: directed transport of minute volumes of liquid, splitting, merging and mixing of flows. Virtual channels can be formed directly on standard biological substrates, which we demonstrate by sequential immunodetection at arrays of individual reaction sites on a glass slide and by alternating between local and global processing of surface-adherent cell-block sections. This approach is simple, versatile and generic enough to form the basis of a new class of microfluidic techniques.
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Affiliation(s)
- David P Taylor
- Laboratory of Microsystems LMIS4, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
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Case DJ, Angilella JR, Motter AE. Spontaneous oscillations and negative-conductance transitions in microfluidic networks. SCIENCE ADVANCES 2020; 6:eaay6761. [PMID: 32426493 PMCID: PMC7220308 DOI: 10.1126/sciadv.aay6761] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/09/2019] [Accepted: 02/27/2020] [Indexed: 06/11/2023]
Abstract
The tendency for flows in microfluidic systems to behave linearly poses challenges for designing integrated flow control schemes to carry out complex fluid processing tasks. This hindrance precipitated the use of numerous external control devices to manipulate flows, thereby thwarting the potential scalability and portability of lab-on-a-chip technology. Here, we devise a microfluidic network exhibiting nonlinear flow dynamics that enable new mechanisms for on-chip flow control. This network is shown to exhibit oscillatory output patterns, bistable flow states, hysteresis, signal amplification, and negative-conductance transitions, all without reliance on dedicated external control hardware, movable parts, flexible components, or oscillatory inputs. These dynamics arise from nonlinear fluid inertia effects in laminar flows that we amplify and harness through the design of the network geometry. These results, which are supported by theory and simulations, have the potential to inspire development of new built-in control capabilities, such as on-chip timing and synchronized flow patterns.
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Affiliation(s)
- Daniel J. Case
- Department of Physics and Astronomy, Northwestern University, Evanston, IL 60208, USA
| | | | - Adilson E. Motter
- Department of Physics and Astronomy, Northwestern University, Evanston, IL 60208, USA
- Northwestern Institute on Complex Systems, Northwestern University, Evanston, IL 60208, USA
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Silver Nanoprism Enhanced Colorimetry for Precise Detection of Dissolved Oxygen. MICROMACHINES 2020; 11:mi11040383. [PMID: 32260450 PMCID: PMC7230719 DOI: 10.3390/mi11040383] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/18/2020] [Revised: 03/30/2020] [Accepted: 04/02/2020] [Indexed: 12/15/2022]
Abstract
Dissolved oxygen (DO) content is an essential indicator for evaluating the quality of the water body and the main parameter for water quality monitoring. The development of high-precision DO detection methods is of great significance. This paper reports an integrated optofluidic device for the high precision measurement of dissolved oxygen based on the characteristics of silver nanoprisms. Metal nanoparticles, especially silver nanoprisms, are extremely sensitive to their surroundings. In glucose and glucose oxidase systems, dissolved oxygen will be transformed into H2O2, which affects the oxidation and erosion process of nanoprisms, then influences the optical properties of nanoparticles. By detecting the shift in the plasma resonance peak of the silver nanoparticles, the dissolved oxygen (DO) content can be determined accurately. Great reconfigurability is one of the most significant advantages of the optofluidic device. By simply adjusting the flow rate ratio between the silver nanoprisms flow and the water sample flow, real-time continuous adjustment of the detection ranges of DO from 0 to 16 mg/L can be realized dynamically. The detection limit of this device is as low as 0.11 µM (3.52 µg/L) for DO measurement. Thus, the present optofluidic system has a wide range of potential applications in fields of biomedical analyses and water sensing.
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Yin P, Zhao L, Chen Z, Jiao Z, Shi H, Hu B, Yuan S, Tian J. Simulation and practice of particle inertial focusing in 3D-printed serpentine microfluidic chips via commercial 3D-printers. SOFT MATTER 2020; 16:3096-3105. [PMID: 32149313 DOI: 10.1039/d0sm00084a] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
Inertial focusing of particles in serpentine microfluidic chips has been studied over the past decade. Here, a study to investigate the particle inertial focusing in 3D-printed serpentine microfluidic chips was conducted by simulation and practice. A test model was designed and printed using four commercial 3D-printers. Commercial inkjet 3D-printers have shown the best printing channel resolution of up to 0.1 mm. The force analysis of particle inertial focusing in 3D-printed microfluidic chips with large cross-sectional channels was discussed. Important parameters such as the channel curvature and flow velocity were studied by simulation. The optimal channel curvature and flow velocity are 5.9 mm and 480 μL min-1 (Re: 29.8 and De: 4.49) in the 3D-printed microfluidic chips with 0.2 mm × 0.4 mm cross-sectional channels. Under these optimal conditions, particles were well focused in the middle of the channel. Furthermore, two kinds of cancer cells were focused in these 3D-printed serpentine microfluidic chips under the optimal conditions. We envision that this improved study would provide helpful insights into simulating particle inertial focusing in 3D-printed microfluidic chips and promoting 3D-printed microfluidic chips to commercial production.
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Affiliation(s)
- Pengju Yin
- School of Life Science and Technology, Library, Xidian University, Xi'an 710126, Shaanxi, People's Republic of China.
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29
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Raoufi MA, Razavi Bazaz S, Niazmand H, Rouhi O, Asadnia M, Razmjou A, Ebrahimi Warkiani M. Fabrication of unconventional inertial microfluidic channels using wax 3D printing. SOFT MATTER 2020; 16:2448-2459. [PMID: 31984393 DOI: 10.1039/c9sm02067e] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
Inertial microfluidics has emerged over the past decade as a powerful tool to accurately control cells and microparticles for diverse biological and medical applications. Many approaches have been proposed to date in order to increase the efficiency and accuracy of inertial microfluidic systems. However, the effects of channel cross-section and solution properties (Newtonian or non-Newtonian) have not been fully explored, primarily due to limitations in current microfabrication methods. In this study, we overcome many of these limitations using wax 3D printing technology and soft lithography through a novel workflow, which eliminates the need for the use of silicon lithography and polydimethylsiloxane (PDMS) bonding. We have shown that by adding dummy structures to reinforce the main channels, optimizing the gap between the dummy and main structures, and dissolving the support wax on a PDMS slab to minimize the additional handling steps, one can make various non-conventional microchannels. These substantially improve upon previous wax printed microfluidic devices where the working area falls into the realm of macrofluidics rather than microfluidics. Results revealed a surface roughness of 1.75 μm for the printed channels, which does not affect the performance of inertial microfluidic devices used in this study. Channels with complex cross-sections were fabricated and then analyzed to investigate the effects of viscoelasticity and superposition on the lateral migration of the particles. Finally, as a proof of concept, microcarriers were separated from human mesenchymal stem cells using an optimized channel with maximum cell-holding capacity, demonstrating the suitability of these microchannels in the bioprocessing industry.
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Affiliation(s)
- Mohammad Amin Raoufi
- School of Biomedical Engineering, University of Technology Sydney, NSW 2007, Australia.
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30
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Ahmed H, Ramesan S, Lee L, Rezk AR, Yeo LY. On-Chip Generation of Vortical Flows for Microfluidic Centrifugation. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2020; 16:e1903605. [PMID: 31535785 DOI: 10.1002/smll.201903605] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2019] [Revised: 08/20/2019] [Indexed: 05/21/2023]
Abstract
Microcentrifugation constitutes an important part of the microfluidic toolkit in a similar way that centrifugation is crucial to many macroscopic procedures, given that micromixing, sample preconcentration, particle separation, component fractionation, and cell agglomeration are essential operations in small scale processes. Yet, the dominance of capillary and viscous effects, which typically tend to retard flow, over inertial and gravitational forces, which are often useful for actuating flows and hence centrifugation, at microscopic scales makes it difficult to generate rotational flows at these dimensions, let alone with sufficient vorticity to support efficient mixing, separation, concentration, or aggregation. Herein, the various technologies-both passive and active-that have been developed to date for vortex generation in microfluidic devices are reviewed. Various advantages or limitations associated with each are outlined, in addition to highlighting the challenges that need to be overcome for their incorporation into integrated microfluidic devices.
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Affiliation(s)
- Heba Ahmed
- Micro/Nanophysics Research Laboratory, School of Engineering, RMIT University, Melbourne, VIC, 3000, Australia
| | - Shwathy Ramesan
- Micro/Nanophysics Research Laboratory, School of Engineering, RMIT University, Melbourne, VIC, 3000, Australia
| | - Lillian Lee
- Micro/Nanophysics Research Laboratory, School of Engineering, RMIT University, Melbourne, VIC, 3000, Australia
| | - Amgad R Rezk
- Micro/Nanophysics Research Laboratory, School of Engineering, RMIT University, Melbourne, VIC, 3000, Australia
| | - Leslie Y Yeo
- Micro/Nanophysics Research Laboratory, School of Engineering, RMIT University, Melbourne, VIC, 3000, Australia
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31
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Disease diagnostics using hydrodynamic flow focusing in microfluidic devices: Beyond flow cytometry. Biomed Eng Lett 2020; 10:241-257. [PMID: 32431954 DOI: 10.1007/s13534-019-00144-6] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2019] [Revised: 11/23/2019] [Accepted: 11/28/2019] [Indexed: 01/09/2023] Open
Abstract
The multi-disciplinary field of microfluidics has the potential to provide solutions to a diverse set of problems. It offers the advantages of high-throughput, continuous, rapid and expeditious analysis requiring minute quantities of sample. However, even as this field has yielded many mass-manufacturable and cost-efficient point-of-care devices, its direct and practical applications into the field of disease diagnostics still remain limited and largely overlooked by the industry. This review focuses on the phenomenon of hydrodynamic focusing and its potential to materialize solutions for appropriate diagnosis and prognosis. The study aims to look beyond its intended cytometric applications and focus on unambiguous disease detection, monitoring, drug delivery, studies conducted on DNA and highlight the instances in the scientific literature that have proposed such approach.
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32
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Zhou J, Mukherjee P, Gao H, Luan Q, Papautsky I. Label-free microfluidic sorting of microparticles. APL Bioeng 2019; 3:041504. [PMID: 31832577 PMCID: PMC6906121 DOI: 10.1063/1.5120501] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2019] [Accepted: 11/21/2019] [Indexed: 12/11/2022] Open
Abstract
Massive growth of the microfluidics field has triggered numerous advances in focusing, separating, ordering, concentrating, and mixing of microparticles. Microfluidic systems capable of performing these functions are rapidly finding applications in industrial, environmental, and biomedical fields. Passive and label-free methods are one of the major categories of such systems that have received enormous attention owing to device operational simplicity and low costs. With new platforms continuously being proposed, our aim here is to provide an updated overview of the state of the art for passive label-free microparticle separation, with emphasis on performance and operational conditions. In addition to the now common separation approaches using Newtonian flows, such as deterministic lateral displacement, pinched flow fractionation, cross-flow filtration, hydrodynamic filtration, and inertial microfluidics, we also discuss separation approaches using non-Newtonian, viscoelastic flow. We then highlight the newly emerging approach based on shear-induced diffusion, which enables direct processing of complex samples such as untreated whole blood. Finally, we hope that an improved understanding of label-free passive sorting approaches can lead to sophisticated and useful platforms toward automation in industrial, environmental, and biomedical fields.
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Affiliation(s)
- Jian Zhou
- Department of Bioengineering, University of Illinois at Chicago, Chicago, Illinois 60607, USA
| | - Prithviraj Mukherjee
- Department of Bioengineering, University of Illinois at Chicago, Chicago, Illinois 60607, USA
| | - Hua Gao
- Department of Bioengineering, University of Illinois at Chicago, Chicago, Illinois 60607, USA
| | - Qiyue Luan
- Department of Bioengineering, University of Illinois at Chicago, Chicago, Illinois 60607, USA
| | - Ian Papautsky
- Department of Bioengineering, University of Illinois at Chicago, Chicago, Illinois 60607, USA
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Hamilton ES, Ganjalizadeh V, Wright JG, Pitt WG, Schmidt H, Hawkins AR. 3D hydrodynamic focusing in microscale channels formed with two photoresist layers. MICROFLUIDICS AND NANOFLUIDICS 2019; 23:122. [PMID: 35664662 PMCID: PMC9162057 DOI: 10.1007/s10404-019-2293-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2019] [Accepted: 10/09/2019] [Indexed: 06/01/2023]
Abstract
3D hydrodynamic focusing was implemented with channel cross-section dimensions smaller than 10 μm. Microchannels were formed using sacrificial etching of two photoresist layers on a silicon wafer. The photoresist forms a plus-shaped prismatic focusing fluid junction which was coated with plasma-enhanced chemical-vapor-deposited oxide. Buffer fluid carried to the focusing junction envelopes an intersecting sample fluid, resulting in 3D focusing of the sample stream. The design requires four fluid ports and operates across a wide range of fluid velocities through pressure-driven flow. The focusing design was integrated with optical waveguides to interrogate fluorescing particles and confirm 3D focusing. Particle diffusion away from a focused stream was characterized.
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Affiliation(s)
- Erik S. Hamilton
- Electrical and Computer Engineering, Brigham Young University, 450 Engineering Building, Provo, UT 84602, USA
| | - Vahid Ganjalizadeh
- Electrical and Computer Engineering, University of California, Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA
| | - Joel G. Wright
- Electrical and Computer Engineering, Brigham Young University, 450 Engineering Building, Provo, UT 84602, USA
| | - William G. Pitt
- Chemical Engineering, Brigham Young University, 330 Engineering Building, Provo, UT 84602, USA
| | - Holger Schmidt
- Electrical and Computer Engineering, University of California, Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA
| | - Aaron R. Hawkins
- Electrical and Computer Engineering, Brigham Young University, 450 Engineering Building, Provo, UT 84602, USA
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34
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Braess’s paradox and programmable behaviour in microfluidic networks. Nature 2019; 574:647-652. [DOI: 10.1038/s41586-019-1701-6] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2018] [Accepted: 08/01/2019] [Indexed: 01/01/2023]
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35
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Stoecklein D, Davies M, de Rutte JM, Wu CY, Di Carlo D, Ganapathysubramanian B. FlowSculpt: software for efficient design of inertial flow sculpting devices. LAB ON A CHIP 2019; 19:3277-3291. [PMID: 31482902 DOI: 10.1039/c9lc00658c] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
Flow sculpting is a powerful method for passive flow control that uses a sequence of bluff-body structures to engineer the structure of inertially flowing microfluidic streams. A variety of cross-sectional flow shapes can be created through this method, offering a new platform for flow manipulation or material fabrication useful in bioengineering, manufacturing, and chemistry applications. However, the inverse problem in flow sculpting - designing a device that produces a target fluid flow shape - remains challenging due to the complex, diverse, and enormous design space. Solutions to the inverse problem have been constrained to single-material fluid streams that are shaped into top-bottom symmetric shapes due to the bluff-body structures available in current libraries (pillars) that span the height of the channel. In this work, we introduce multi-material design and symmetry-breaking flow deformations enabled by half-height pillars, presented within an extremely fast simulation method for flow sculpting yielding a 34-fold reduction in runtime. The framework is deployed freely as a cross-platform application called "FlowSculpt". We detail its implementation and usage, and discuss the addition of enhanced search operations, which enable users to more easily design flow shapes that replicate their input drawings. With FlowSculpt, the microfluidics community can now quickly design flow shaping microfluidic devices on modest hardware, and easily integrate these complex physics into their research toolkit.
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Affiliation(s)
- Daniel Stoecklein
- Department of Bioengineering, University of California, Los Angeles, California, USA.
| | - Michael Davies
- Department of Mechanical Engineering, Iowa State University, Ames, Iowa, USA.
| | | | - Chueh-Yu Wu
- Department of Bioengineering, University of California, Los Angeles, California, USA.
| | - Dino Di Carlo
- Department of Bioengineering, University of California, Los Angeles, California, USA.
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36
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Öztürk Ö, Servantie J. Statics and dynamics of polymeric droplets on chemically homogeneous and heterogeneous substrates. Phys Rev E 2019; 100:023113. [PMID: 31574604 DOI: 10.1103/physreve.100.023113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2019] [Indexed: 06/10/2023]
Abstract
We present a molecular dynamics study of the motion of cylindrical polymer droplets on striped surfaces. We first consider the equilibrium properties of droplets on different surfaces, we show that for small stripes the Cassie-Baxter equation gives a good approximation of the equilibrium contact angle. As the stripe width becomes nonnegligible compared to the dimension of the droplet, it has to deform significantly to minimize its free energy; this results in a smaller value of the contact angle than the continuum model predicts. We then evaluate the slip length and thus the damping coefficient as a function of the stripe width. For very small stripes, the heterogeneous surface behaves as an effective surface, with the same damping as a homogeneous surface with the same contact angle. However, as the stripe width increases, damping at the surface increases until reaching a plateau. Afterwards, we study the dynamics of droplets under a bulk force. We show that if the stripes are large enough the droplets are pinned until a critical force. The critical force increases linearly with stripe width. For large enough forces, the average velocity increases linearly with the force, we show that it can then be predicted by a model depending only on droplet size, contact angle, viscosity, and slip length. We show that the velocity of the droplet varies sinusoidally as a function of its position on the substrate. However, for bulk forces just above the depinning force we observe a characteristic stick-slip motion, with successive pinnings and depinnings.
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Affiliation(s)
- Ö Öztürk
- Department of Physics, Istanbul Technical University, Maslak 34469, Istanbul, Turkey
| | - J Servantie
- Department of Physics, Istanbul Technical University, Maslak 34469, Istanbul, Turkey
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37
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Rafeie M, Hosseinzadeh S, Taylor RA, Warkiani ME. New insights into the physics of inertial microfluidics in curved microchannels. I. Relaxing the fixed inflection point assumption. BIOMICROFLUIDICS 2019; 13:034117. [PMID: 31431813 PMCID: PMC6697030 DOI: 10.1063/1.5109004] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2019] [Accepted: 06/12/2019] [Indexed: 05/08/2023]
Abstract
Inertial microfluidics represents a powerful new tool for accurately positioning cells and microparticles within fluids for a variety of biomedical, clinical, and industrial applications. In spite of enormous advancements in the science and design of these devices, particularly in curved microfluidic channels, contradictory experimental results have confounded researchers and limited progress. Thus, at present, a complete theory which describes the underlying physics is lacking. We propose that this bottleneck is due to one simple mistaken assumption-the locations of inflection points of the Dean velocity profile in curved microchannels are not fixed, but can actually shift with the flow rate. Herein, we propose that the dynamic distance (δ) between the real equilibrium positions and their nearest inflection points can clearly explain several (previously) unexplained phenomena in inertial microfluidic systems. More interestingly, we found that this parameter, δ, is a function of several geometric and operational parameters, all of which are investigated (in detail) here with a series of experiments and simulations of different spiral microchannels. This key piece of understanding is expected to open the door for researchers to develop new and more effective inertial microfluidic designs.
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Affiliation(s)
- Mehdi Rafeie
- School of Mechanical and Manufacturing Engineering, University of New South Wales, Sydney, New South Wales 2052, Australia
| | - Shahin Hosseinzadeh
- School of Mechanical and Manufacturing Engineering, University of New South Wales, Sydney, New South Wales 2052, Australia
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38
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Rafeie M, Hosseinzadeh S, Huang J, Mihandoust A, Warkiani ME, Taylor RA. New insights into the physics of inertial microfluidics in curved microchannels. II. Adding an additive rule to understand complex cross-sections. BIOMICROFLUIDICS 2019; 13:034118. [PMID: 31431814 PMCID: PMC6697028 DOI: 10.1063/1.5109012] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2019] [Accepted: 06/12/2019] [Indexed: 05/09/2023]
Abstract
Curved microchannels allow controllable microparticle focusing, but a full understanding of particle behavior has been limited-even for simple rectangular and trapezoidal shapes. At present, most microfluidic particle separation literature is dedicated to adding "internal" complexity (via sheath flow or obstructions) to relatively simple cross-sectional channel shapes. We propose that, with sufficient understanding of particle behavior, an equally viable pathway for microparticle focusing could utilize complex "external" cross-sectional shapes. By investigating three novel, complex spiral microchannels, we have found that it is possible to passively focus (6, 10, and 13 μm) microparticles in the middle of a convex channel. Also, we found that in concave and jagged channel designs, it is possible to create multiple, tight focusing bands. In addition to these performance benefits, we report an "additive rule" herein, which states that complex channels can be considered as multiple, independent, simple cross-sectional shapes. We show with experimental and numerical analysis that this new additive rule can accurately predict particle behavior in complex cross-sectional shaped channels and that it can help to extract general inertial focusing tendencies for suspended particles in curved channels. Overall, this work provides simple, yet reliable, guidelines for the design of advanced curved microchannel cross sections.
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Affiliation(s)
- Mehdi Rafeie
- School of Mechanical and Manufacturing Engineering, University of New South Wales, Sydney, New South Wales 2052, Australia
| | - Shahin Hosseinzadeh
- School of Mechanical and Manufacturing Engineering, University of New South Wales, Sydney, New South Wales 2052, Australia
| | - Jingrui Huang
- School of Mechanical and Manufacturing Engineering, University of New South Wales, Sydney, New South Wales 2052, Australia
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39
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Cruz J, Graells T, Walldén M, Hjort K. Inertial focusing with sub-micron resolution for separation of bacteria. LAB ON A CHIP 2019; 19:1257-1266. [PMID: 30821308 DOI: 10.1039/c9lc00080a] [Citation(s) in RCA: 39] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
In this paper, we study inertial focusing in curved channels and demonstrate the alignment of particles with diameters between 0.5 and 2.0 μm, a range of biological relevance since it comprises a multitude of bacteria and organelles of eukaryotic cells. The devices offer very sensitive control over the equilibrium positions and allow two modes of operation. In the first, particles having a large variation in size are focused and concentrated together. In the second, the distribution spreads in a range of sizes achieving separation with sub-micron resolution. These systems were validated with three bacteria species (Escherichia coli, Salmonella typhimurium and Klebsiella pneumoniae) showing good alignment while maintaining the viability in all cases. The experiments also revealed that the particles follow a helicoidal trajectory to reach the equilibrium positions, similar to the fluid streamlines simulated in COMSOL, implying that these positions occupy different heights in the cross section. When the equilibrium positions move to the inner wall as the flow rate increases, they are at a similar distance from the centre than in straight channels (∼0.6R), but when the equilibrium positions move to the outer wall as the flow rate increases, they are closer to the centre and the particles pass close to the inner wall to elevate their position before reaching them. These observations were used along with COMSOL simulations to explain the mechanism behind the local force balance and the migration of particles, which we believe contributes to further understanding of the phenomenon. Hopefully, this will make designing more intuitive and reduce the high pressure demands, enabling manipulation of particles much smaller than a micrometer.
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Affiliation(s)
- Javier Cruz
- Engineering Sciences, Uppsala University, Ångström Laboratoriet, Uppsala, Sweden.
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40
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Chung AJ. A Minireview on Inertial Microfluidics Fundamentals: Inertial Particle Focusing and Secondary Flow. BIOCHIP JOURNAL 2019. [DOI: 10.1007/s13206-019-3110-1] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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41
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Zhou Y, Ma Z, Tayebi M, Ai Y. Submicron Particle Focusing and Exosome Sorting by Wavy Microchannel Structures within Viscoelastic Fluids. Anal Chem 2019; 91:4577-4584. [DOI: 10.1021/acs.analchem.8b05749] [Citation(s) in RCA: 65] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Yinning Zhou
- Pillar of Engineering Product Development, Singapore University of Technology and Design, Singapore 487372, Singapore
| | - Zhichao Ma
- Pillar of Engineering Product Development, Singapore University of Technology and Design, Singapore 487372, Singapore
| | - Mahnoush Tayebi
- Pillar of Engineering Product Development, Singapore University of Technology and Design, Singapore 487372, Singapore
| | - Ye Ai
- Pillar of Engineering Product Development, Singapore University of Technology and Design, Singapore 487372, Singapore
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42
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Schaaf C, Rühle F, Stark H. A flowing pair of particles in inertial microfluidics. SOFT MATTER 2019; 15:1988-1998. [PMID: 30714602 DOI: 10.1039/c8sm02476f] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
A flowing pair of particles in inertial microfluidics gives important insights into understanding and controlling the collective dynamics of particles like cells or droplets in microfluidic devices. They are applied in medical cell analysis and engineering. We study the dynamics of a pair of solid particles flowing through a rectangular microchannel using lattice Boltzmann simulations. We determine the inertial lift force profiles as a function of the two particle positions, their axial distance, and the Reynolds number. Generally, the profiles strongly differ between particles leading and lagging in flow and the lift forces are enhanced due to the presence of a second particle. At small axial distances, they are determined by viscous forces, while inertial forces dominate at large separations. We identify cross-streamline pairs as stable fixed points in the lift force profiles and argue that same-streamline configurations are only one-sided stable. Depending on the initial conditions, the two-particle lift forces in combination with the Poiseuille flow give rise to three types of unbound particle trajectories, called moving-apart, passing, and swapping, and one type of bound trajectory, where the particles perform damped oscillations towards the cross-stream line configuration. The damping rate scales with Reynolds number squared, since inertial forces are responsible for driving the particles to their steady-state positions.
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Affiliation(s)
- Christian Schaaf
- Institut für Theoretische Physik, Technische Universität Berlin, Hardenbergstr. 36, 10623 Berlin, Germany.
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43
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Zhang X, Xia K, Ji A, Xiang N. A smart and portable micropump for stable liquid delivery. Electrophoresis 2019; 40:865-872. [DOI: 10.1002/elps.201800494] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2018] [Revised: 12/11/2018] [Accepted: 12/23/2018] [Indexed: 02/03/2023]
Affiliation(s)
- Xinjie Zhang
- College of Mechanical and Electrical Engineering; Hohai University; Changzhou P. R. China
- Jiangsu Key Laboratory for Design and Manufacture of Micro-Nano Biomedical Instruments; Southeast University; Nanjing P. R. China
| | - Kang Xia
- College of Mechanical and Electrical Engineering; Hohai University; Changzhou P. R. China
| | - Aimin Ji
- College of Mechanical and Electrical Engineering; Hohai University; Changzhou P. R. China
| | - Nan Xiang
- Jiangsu Key Laboratory for Design and Manufacture of Micro-Nano Biomedical Instruments; Southeast University; Nanjing P. R. China
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44
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Affiliation(s)
- Daniel Stoecklein
- Department of Bioengineering, University of California, Los Angeles, Los Angeles, California 90095, United States
| | - Dino Di Carlo
- Department of Bioengineering, University of California, Los Angeles, Los Angeles, California 90095, United States
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Huang Z, Yang Q, Su M, Li Z, Hu X, Li Y, Pan Q, Ren W, Li F, Song Y. A General Approach for Fluid Patterning and Application in Fabricating Microdevices. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2018; 30:e1802172. [PMID: 29920800 DOI: 10.1002/adma.201802172] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2018] [Revised: 05/14/2018] [Indexed: 06/08/2023]
Abstract
Engineering the fluid interface such as the gas-liquid interface is of great significance for solvent processing applications including functional material assembly, inkjet printing, and high-performance device fabrication. However, precisely controlling the fluid interface remains a great challenge owing to its flexibility and fluidity. Here, a general method to manipulate the fluid interface for fluid patterning using micropillars in the microchannel is reported. The principle of fluid patterning for immiscible fluid pairs including air, water, and oils is proposed. This understanding enables the preparation of programmable multiphase fluid patterns and assembly of multilayer functional materials to fabricate micro-optoelectronic devices. This general strategy of fluid patterning provides a promising platform to study the fundamental processes occurring on the fluid interface, and benefits applications in many subjects, such as microfluidics, microbiology, chemical analysis and detection, material synthesis and assembly, device fabrication, etc.
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Affiliation(s)
- Zhandong Huang
- Key Laboratory of Green Printing, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences (ICCAS), Beijing Engineering Research Center of Nanomaterials for Green Printing Technology, Beijing National Laboratory for Molecular Sciences (BNLMS), Beijing, 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - Qiang Yang
- School of Materials and Energy, University of Electronic Science and Technology of China, Chengdu, 610054, P. R. China
| | - Meng Su
- Key Laboratory of Green Printing, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences (ICCAS), Beijing Engineering Research Center of Nanomaterials for Green Printing Technology, Beijing National Laboratory for Molecular Sciences (BNLMS), Beijing, 100190, P. R. China
| | - Zheng Li
- Key Laboratory of Green Printing, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences (ICCAS), Beijing Engineering Research Center of Nanomaterials for Green Printing Technology, Beijing National Laboratory for Molecular Sciences (BNLMS), Beijing, 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - Xiaotian Hu
- Key Laboratory of Green Printing, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences (ICCAS), Beijing Engineering Research Center of Nanomaterials for Green Printing Technology, Beijing National Laboratory for Molecular Sciences (BNLMS), Beijing, 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - Yifan Li
- Key Laboratory of Green Printing, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences (ICCAS), Beijing Engineering Research Center of Nanomaterials for Green Printing Technology, Beijing National Laboratory for Molecular Sciences (BNLMS), Beijing, 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - Qi Pan
- Key Laboratory of Green Printing, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences (ICCAS), Beijing Engineering Research Center of Nanomaterials for Green Printing Technology, Beijing National Laboratory for Molecular Sciences (BNLMS), Beijing, 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - Wanjie Ren
- Key Laboratory of Green Printing, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences (ICCAS), Beijing Engineering Research Center of Nanomaterials for Green Printing Technology, Beijing National Laboratory for Molecular Sciences (BNLMS), Beijing, 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - Fengyu Li
- Key Laboratory of Green Printing, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences (ICCAS), Beijing Engineering Research Center of Nanomaterials for Green Printing Technology, Beijing National Laboratory for Molecular Sciences (BNLMS), Beijing, 100190, P. R. China
| | - Yanlin Song
- Key Laboratory of Green Printing, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences (ICCAS), Beijing Engineering Research Center of Nanomaterials for Green Printing Technology, Beijing National Laboratory for Molecular Sciences (BNLMS), Beijing, 100190, P. R. China
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Paulsen KS, Deng Y, Chung AJ. DIY 3D Microparticle Generation from Next Generation Optofluidic Fabrication. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2018; 5:1800252. [PMID: 30027056 PMCID: PMC6051230 DOI: 10.1002/advs.201800252] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2018] [Revised: 04/15/2018] [Indexed: 05/11/2023]
Abstract
Complex-shaped microparticles can enhance applications in drug delivery, tissue engineering, and structural materials, although techniques to fabricate these particles remain limited. A microfluidics-based process called optofluidic fabrication that utilizes inertial flows and ultraviolet polymerization has shown great potential for creating highly 3D-shaped particles in a high-throughput manner, but the particle dimensions are mainly at the millimeter scale. Here, a next generation optofluidic fabrication process is presented that utilizes on-the-fly fabricated multiscale fluidic channels producing customized sub-100 µm 3D-shaped microparticles. This flexible design scheme offers a user-friendly platform for rapid prototyping of new 3D particle shapes, providing greater potential for creating impactful engineered microparticles.
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Affiliation(s)
- Kevin S. Paulsen
- Department of Mechanical, Aerospace, and Nuclear EngineeringRensselaer Polytechnic Institute (RPI)TroyNY12180USA
- Engineering DirectorateLawrence Livermore National Laboratory (LLNL)LivermoreCA94550USA
| | - Yanxiang Deng
- Department of Mechanical, Aerospace, and Nuclear EngineeringRensselaer Polytechnic Institute (RPI)TroyNY12180USA
| | - Aram J. Chung
- Department of Mechanical, Aerospace, and Nuclear EngineeringRensselaer Polytechnic Institute (RPI)TroyNY12180USA
- School of Biomedical EngineeringKorea UniversitySeoul02841Republic of Korea
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48
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Lore KG, Stoecklein D, Davies M, Ganapathysubramanian B, Sarkar S. A deep learning framework for causal shape transformation. Neural Netw 2018; 98:305-317. [PMID: 29301111 DOI: 10.1016/j.neunet.2017.12.003] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2017] [Revised: 11/28/2017] [Accepted: 12/04/2017] [Indexed: 12/30/2022]
Abstract
Recurrent neural network (RNN) and Long Short-term Memory (LSTM) networks are the common go-to architecture for exploiting sequential information where the output is dependent on a sequence of inputs. However, in most considered problems, the dependencies typically lie in the latent domain which may not be suitable for applications involving the prediction of a step-wise transformation sequence that is dependent on the previous states only in the visible domain with a known terminal state. We propose a hybrid architecture of convolution neural networks (CNN) and stacked autoencoders (SAE) to learn a sequence of causal actions that nonlinearly transform an input visual pattern or distribution into a target visual pattern or distribution with the same support and demonstrated its practicality in a real-world engineering problem involving the physics of fluids. We solved a high-dimensional one-to-many inverse mapping problem concerning microfluidic flow sculpting, where the use of deep learning methods as an inverse map is very seldom explored. This work serves as a fruitful use-case to applied scientists and engineers in how deep learning can be beneficial as a solution for high-dimensional physical problems, and potentially opening doors to impactful advance in fields such as material sciences and medical biology where multistep topological transformations is a key element.
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Affiliation(s)
- Kin Gwn Lore
- Department of Mechanical Engineering, Iowa State University, Ames IA-50014, United States
| | - Daniel Stoecklein
- Department of Mechanical Engineering, Iowa State University, Ames IA-50014, United States
| | - Michael Davies
- Department of Mechanical Engineering, Iowa State University, Ames IA-50014, United States
| | | | - Soumik Sarkar
- Department of Mechanical Engineering, Iowa State University, Ames IA-50014, United States.
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Kim JA, Lee JR, Je TJ, Jeon EC, Lee W. Size-Dependent Inertial Focusing Position Shift and Particle Separations in Triangular Microchannels. Anal Chem 2018; 90:1827-1835. [DOI: 10.1021/acs.analchem.7b03851] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
- Jeong-ah Kim
- Graduate
School of Nanoscience and Technology, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
| | - Je-Ryung Lee
- Department of Nano Manufacturing Technology, Korea Institute of Machinery & Materials (KIMM), Daejeon 34103, Republic of Korea
| | - Tae-Jin Je
- Department of Nano Manufacturing Technology, Korea Institute of Machinery & Materials (KIMM), Daejeon 34103, Republic of Korea
| | - Eun-chae Jeon
- Department of Nano Manufacturing Technology, Korea Institute of Machinery & Materials (KIMM), Daejeon 34103, Republic of Korea
| | - Wonhee Lee
- Graduate
School of Nanoscience and Technology, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
- Department
of Physics, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
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50
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Wu CY, Stoecklein D, Kommajosula A, Lin J, Owsley K, Ganapathysubramanian B, Di Carlo D. Shaped 3D microcarriers for adherent cell culture and analysis. MICROSYSTEMS & NANOENGINEERING 2018; 4:21. [PMID: 31057909 PMCID: PMC6220171 DOI: 10.1038/s41378-018-0020-7] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2018] [Accepted: 04/30/2018] [Indexed: 05/19/2023]
Abstract
Standard tissue culture of adherent cells is known to poorly replicate physiology and often entails suspending cells in solution for analysis and sorting, which modulates protein expression and eliminates intercellular connections. To allow adherent culture and processing in flow, we present 3D-shaped hydrogel cell microcarriers, which are designed with a recessed nook in a first dimension to provide a tunable shear-stress shelter for cell growth, and a dumbbell shape in an orthogonal direction to allow for self-alignment in a confined flow, important for processing in flow and imaging flow cytometry. We designed a method to rapidly design, using the genetic algorithm, and manufacture the microcarriers at scale using a transient liquid molding optofluidic approach. The ability to precisely engineer the microcarriers solves fundamental challenges with shear-stress-induced cell damage during liquid-handling, and is poised to enable adherent cell culture, in-flow analysis, and sorting in a single format.
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Affiliation(s)
- Chueh-Yu Wu
- Department of Bioengineering, University of California, Los Angeles, CA USA
- Department of Mechanical and Aerospace Engineering, University of California, Los Angeles, CA USA
- California NanoSystems Institute, University of California, Los Angeles, CA USA
- Jonsson Comprehensive Cancer Center, University of California, Los Angeles, CA USA
| | - Daniel Stoecklein
- Department of Mechanical Engineering, Iowa State University, Ames, IA USA
| | - Aditya Kommajosula
- Department of Mechanical Engineering, Iowa State University, Ames, IA USA
| | - Jonathan Lin
- Department of Bioengineering, University of California, Los Angeles, CA USA
- California NanoSystems Institute, University of California, Los Angeles, CA USA
- Jonsson Comprehensive Cancer Center, University of California, Los Angeles, CA USA
| | - Keegan Owsley
- Department of Bioengineering, University of California, Los Angeles, CA USA
- California NanoSystems Institute, University of California, Los Angeles, CA USA
- Jonsson Comprehensive Cancer Center, University of California, Los Angeles, CA USA
| | | | - Dino Di Carlo
- Department of Bioengineering, University of California, Los Angeles, CA USA
- Department of Mechanical and Aerospace Engineering, University of California, Los Angeles, CA USA
- California NanoSystems Institute, University of California, Los Angeles, CA USA
- Jonsson Comprehensive Cancer Center, University of California, Los Angeles, CA USA
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