1
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Hsu LM, Shih YYI. Neuromodulation in Small Animal fMRI. J Magn Reson Imaging 2025; 61:1597-1617. [PMID: 39279265 PMCID: PMC11903207 DOI: 10.1002/jmri.29575] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2024] [Revised: 08/01/2024] [Accepted: 08/02/2024] [Indexed: 09/18/2024] Open
Abstract
The integration of functional magnetic resonance imaging (fMRI) with advanced neuroscience technologies in experimental small animal models offers a unique path to interrogate the causal relationships between regional brain activity and brain-wide network measures-a goal challenging to accomplish in human subjects. This review traces the historical development of the neuromodulation techniques commonly used in rodents, such as electrical deep brain stimulation, optogenetics, and chemogenetics, and focuses on their application with fMRI. We discuss their advantageousness roles in uncovering the signaling architecture within the brain and the methodological considerations necessary when conducting these experiments. By presenting several rodent-based case studies, we aim to demonstrate the potential of the multimodal neuromodulation approach in shedding light on neurovascular coupling, the neural basis of brain network functions, and their connections to behaviors. Key findings highlight the cell-type and circuit-specific modulation of brain-wide activity patterns and their behavioral correlates. We also discuss several future directions and feature the use of mediation and moderation analytical models beyond the intuitive evoked response mapping, to better leverage the rich information available in fMRI data with neuromodulation. Using fMRI alongside neuromodulation techniques provide insights into the mesoscopic (relating to the intermediate scale between single neurons and large-scale brain networks) and macroscopic fMRI measures that correlate with specific neuronal events. This integration bridges the gap between different scales of neuroscience research, facilitating the exploration and testing of novel therapeutic strategies aimed at altering network-mediated behaviors. In conclusion, the combination of fMRI with neuromodulation techniques provides crucial insights into mesoscopic and macroscopic brain dynamics, advancing our understanding of brain function in health and disease. EVIDENCE LEVEL: 1 TECHNICAL EFFICACY: Stage 1.
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Affiliation(s)
- Li-Ming Hsu
- Center for Animal Magnetic Resonance Imaging, The University of North Carolina at Chapel Hill
- Biomedical Research Imaging Center, The University of North Carolina at Chapel Hill
- Departments of Radiology, The University of North Carolina at Chapel Hill
| | - Yen-Yu Ian Shih
- Center for Animal Magnetic Resonance Imaging, The University of North Carolina at Chapel Hill
- Biomedical Research Imaging Center, The University of North Carolina at Chapel Hill
- Departments of Neurology, The University of North Carolina at Chapel Hill
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2
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Lakunina A, Socha KZ, Ladd A, Bowen AJ, Chen S, Colonell J, Doshi A, Karsh B, Krumin M, Kulik P, Li A, Neutens P, O'Callaghan J, Olsen M, Putzeys J, Tilmans HA, Ye Z, Welkenhuysen M, Häusser M, Koch C, Ting JT, Dutta B, Harris TD, Steinmetz NA, Svoboda K, Siegle JH, Carandini M. Neuropixels Opto: Combining high-resolution electrophysiology and optogenetics. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2025.02.04.636286. [PMID: 39975326 PMCID: PMC11838571 DOI: 10.1101/2025.02.04.636286] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 02/21/2025]
Abstract
High-resolution extracellular electrophysiology is the gold standard for recording spikes from distributed neural populations, and is especially powerful when combined with optogenetics for manipulation of specific cell types with high temporal resolution. We integrated these approaches into prototype Neuropixels Opto probes, which combine electronic and photonic circuits. These devices pack 960 electrical recording sites and two sets of 14 light emitters onto a 1 cm shank, allowing spatially addressable optogenetic stimulation with blue and red light. In mouse cortex, Neuropixels Opto probes delivered high-quality recordings together with spatially addressable optogenetics, differentially activating or silencing neurons at distinct cortical depths. In mouse striatum and other deep structures, Neuropixels Opto probes delivered efficient optotagging, facilitating the identification of two cell types in parallel. Neuropixels Opto probes represent an unprecedented tool for recording, identifying, and manipulating neuronal populations.
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Affiliation(s)
- Anna Lakunina
- Allen Institute for Neural Dynamics, Seattle, WA, USA
| | - Karolina Z Socha
- UCL Institute of Ophthalmology, University College London, London, UK
| | - Alexander Ladd
- Department of Neurobiology and Biophysics, University of Washington, Seattle, WA, USA
| | - Anna J Bowen
- Department of Neurobiology and Biophysics, University of Washington, Seattle, WA, USA
| | - Susu Chen
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Jennifer Colonell
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA
| | - Anjal Doshi
- Allen Institute for Neural Dynamics, Seattle, WA, USA
| | - Bill Karsh
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA
| | - Michael Krumin
- UCL Institute of Ophthalmology, University College London, London, UK
| | - Pavel Kulik
- Allen Institute for Neural Dynamics, Seattle, WA, USA
| | - Anna Li
- Department of Neurobiology and Biophysics, University of Washington, Seattle, WA, USA
| | | | | | - Meghan Olsen
- Allen Institute for Neural Dynamics, Seattle, WA, USA
| | | | | | - Zhiwen Ye
- Department of Neurobiology and Biophysics, University of Washington, Seattle, WA, USA
| | | | - Michael Häusser
- Wolfson Institute for Biomedical Research, University College London, London, UK
| | | | - Jonathan T Ting
- Department of Neurobiology and Biophysics, University of Washington, Seattle, WA, USA
- Allen Institute for Brain Science, Seattle, WA, USA
| | | | - Timothy D Harris
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA
| | - Nicholas A Steinmetz
- Department of Neurobiology and Biophysics, University of Washington, Seattle, WA, USA
| | - Karel Svoboda
- Allen Institute for Neural Dynamics, Seattle, WA, USA
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | | | - Matteo Carandini
- UCL Institute of Ophthalmology, University College London, London, UK
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3
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Ban S, Yi H, Park J, Huang Y, Yu KJ, Yeo WH. Advances in Photonic Materials and Integrated Devices for Smart and Digital Healthcare: Bridging the Gap Between Materials and Systems. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2025:e2416899. [PMID: 39905874 DOI: 10.1002/adma.202416899] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2024] [Revised: 12/06/2024] [Indexed: 02/06/2025]
Abstract
Recent advances in developing photonic technologies using various materials offer enhanced biosensing, therapeutic intervention, and non-invasive imaging in healthcare. Here, this article summarizes significant technological advancements in materials, photonic devices, and bio-interfaced systems, which demonstrate successful applications for impacting human healthcare via improved therapies, advanced diagnostics, and on-skin health monitoring. The details of required materials, necessary properties, and device configurations are described for next-generation healthcare systems, followed by an explanation of the working principles of light-based therapeutics and diagnostics. Next, this paper shares the recent examples of integrated photonic systems focusing on translation and immediate applications for clinical studies. In addition, the limitations of existing materials and devices and future directions for smart photonic systems are discussed. Collectively, this review article summarizes the recent focus and trends of technological advancements in developing new nanomaterials, light delivery methods, system designs, mechanical structures, material functionalization, and integrated photonic systems to advance human healthcare and digital healthcare.
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Affiliation(s)
- Seunghyeb Ban
- George W. Woodruff School of Mechanical Engineering, Wearable Intelligent Systems and Healthcare Center at the Institute for Matter and Systems, Georgia Institute of Technology, Atlanta, GA, 30332, USA
| | - Hoon Yi
- George W. Woodruff School of Mechanical Engineering, Wearable Intelligent Systems and Healthcare Center at the Institute for Matter and Systems, Georgia Institute of Technology, Atlanta, GA, 30332, USA
| | - Jaejin Park
- Functional Bio-integrated Electronics and Energy Management Lab, School of Electrical and Electronic Engineering, Yonsei University, Seoul, 03722, South Korea
| | - Yunuo Huang
- School of Industrial Design, Wearable Intelligent Systems and Healthcare Center at the Institute for Matter and Systems, Georgia Institute of Technology, Atlanta, GA, 30332, USA
| | - Ki Jun Yu
- Functional Bio-integrated Electronics and Energy Management Lab, School of Electrical and Electronic Engineering, Yonsei University, Seoul, 03722, South Korea
- The Biotech Center, Pohang University of Science and Technology (POSTECH), Gyeongbuk, 37673, South Korea
- Department of Electrical and Electronic Engineering, YU-Korea Institute of Science and Technology (KIST) Institute, Yonsei University, Seoul, 03722, South Korea
| | - Woon-Hong Yeo
- George W. Woodruff School of Mechanical Engineering, Wearable Intelligent Systems and Healthcare Center at the Institute for Matter and Systems, Georgia Institute of Technology, Atlanta, GA, 30332, USA
- Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University School of Medicine, Atlanta, GA, 30332, USA
- Parker H. Petit Institute for Bioengineering and Biosciences, Georgia Institute of Technology, Atlanta, GA, 30332, USA
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4
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Pisano F, Masmudi-Martín M, Andriani MS, Cid E, Kazemzadeh M, Pisanello M, Balena A, Collard L, Parras TJ, Bianco M, Baena P, Tantussi F, Grande M, Sileo L, Gentile F, De Angelis F, De Vittorio M, Menendez de la Prida L, Valiente M, Pisanello F. Vibrational fiber photometry: label-free and reporter-free minimally invasive Raman spectroscopy deep in the mouse brain. Nat Methods 2025; 22:371-379. [PMID: 39741190 DOI: 10.1038/s41592-024-02557-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2022] [Accepted: 10/31/2024] [Indexed: 01/02/2025]
Abstract
Optical approaches to monitor neural activity are transforming neuroscience, owing to a fast-evolving palette of genetically encoded molecular reporters. However, the field still requires robust and label-free technologies to monitor the multifaceted biomolecular changes accompanying brain development, aging or disease. Here, we have developed vibrational fiber photometry as a low-invasive method for label-free monitoring of the biomolecular content of arbitrarily deep regions of the mouse brain in vivo through spontaneous Raman spectroscopy. Using a tapered fiber probe as thin as 1 µm at its tip, we elucidate the cytoarchitecture of the mouse brain, monitor molecular alterations caused by traumatic brain injury, as well as detect markers of brain metastasis with high accuracy. We view our approach, which introduces a deep learning algorithm to suppress probe background, as a promising complement to the existing palette of tools for the optical interrogation of neural function, with application to fundamental and preclinical investigations of the brain and other organs.
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Affiliation(s)
- Filippo Pisano
- Istituto Italiano di Tecnologia, Center for Biomolecular Nanotechnologies, Arnesano, Italy.
- Department of Physics and Astronomy, University of Padova, Padova, Italy.
| | | | - Maria Samuela Andriani
- Istituto Italiano di Tecnologia, Center for Biomolecular Nanotechnologies, Arnesano, Italy
- Dipartimento di Ingegneria dell'Innovazione, Università del Salento, Lecce, Italy
| | - Elena Cid
- Instituto Cajal, CSIC, Madrid, Spain
| | | | | | - Antonio Balena
- Istituto Italiano di Tecnologia, Center for Biomolecular Nanotechnologies, Arnesano, Italy
- Laboratoire Kastler Brossel, Sorbonne University, CNRS, ENS-PSL University, Collège de France, Paris, France
| | - Liam Collard
- Istituto Italiano di Tecnologia, Center for Biomolecular Nanotechnologies, Arnesano, Italy
- RAISE Ecosystem, Genoa, Italy
| | | | - Marco Bianco
- Istituto Italiano di Tecnologia, Center for Biomolecular Nanotechnologies, Arnesano, Italy
| | | | - Francesco Tantussi
- Istituto Italiano di Tecnologia, Center for Convergent Technologies, Genoa, Italy
| | - Marco Grande
- Dipartimento di Ingegneria Elettrica e dell'Informazione, Bari, Italy
| | | | - Francesco Gentile
- Nanotechnology Research Center, Department of Experimental and Clinical Medicine, University of 'Magna Graecia' of Catanzaro, Catanzaro, Italy
| | - Francesco De Angelis
- Istituto Italiano di Tecnologia, Center for Convergent Technologies, Genoa, Italy
| | - Massimo De Vittorio
- Istituto Italiano di Tecnologia, Center for Biomolecular Nanotechnologies, Arnesano, Italy
- Dipartimento di Ingegneria dell'Innovazione, Università del Salento, Lecce, Italy
- RAISE Ecosystem, Genoa, Italy
| | | | | | - Ferruccio Pisanello
- Istituto Italiano di Tecnologia, Center for Biomolecular Nanotechnologies, Arnesano, Italy.
- RAISE Ecosystem, Genoa, Italy.
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5
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Balena A, Bianco M, Andriani MS, Montinaro C, Spagnolo B, Pisanello M, Pisano F, Sabatini BL, De Vittorio M, Pisanello F. Fabrication of nonplanar tapered fibers to integrate optical and electrical signals for neural interfaces in vivo. Nat Protoc 2025:10.1038/s41596-024-01105-9. [PMID: 39843597 DOI: 10.1038/s41596-024-01105-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2024] [Accepted: 11/05/2024] [Indexed: 01/24/2025]
Abstract
Implantable multifunctional probes have transformed neuroscience research, offering access to multifaceted brain activity that was previously unattainable. Typically, simultaneous access to both optical and electrical signals requires separate probes, while their integration into a single device can result in the emergence of photogenerated electrical artifacts, affecting the quality of high-frequency neural recordings. Among the nontrivial strategies aimed at the realization of an implantable multifunctional interface, the integration of optical and electrical capabilities on a single, minimally invasive, tapered optical fiber probe has been recently demonstrated using fibertrodes. Fibertrodes require the application of a set of planar microfabrication techniques to a nonplanar system with low and nonconstant curvature radius. Here we develop a process based on multiple conformal depositions, nonplanar two-photon lithography and chemical wet etching steps to obtain metallic patterns on the highly curved surface of the fiber taper. We detail the manufacturing, encapsulation and back end of the fibertrodes. The design of the probe can be adapted for different experimental requirements. Using the optical setup design, it is possible to perform angle selective light coupling with the fibertrodes and their implantation and use in vivo. The fabrication of fibertrodes is estimated to require 5-9 d. Nonetheless, due to the high scalability of a large part of the protocol, the manufacture of multiple fibertrodes simultaneously substantially reduces the required time for each probe. The procedure is suitable for users with expertise in microfabrication of electronics and neural recordings.
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Affiliation(s)
- Antonio Balena
- Center for Biomolecular Nanotechnologies, Istituto Italiano di Tecnologia, Arnesano, Italy.
- Laboratoire Kastler Brossel, Sorbonne University, CNRS, ENS-PSL University, Collège de France, Paris, France.
| | - Marco Bianco
- Center for Biomolecular Nanotechnologies, Istituto Italiano di Tecnologia, Arnesano, Italy
| | - Maria Samuela Andriani
- Center for Biomolecular Nanotechnologies, Istituto Italiano di Tecnologia, Arnesano, Italy
- Dipartimento di Ingegneria dell'Innovazione, Università del Salento, Lecce, Italy
| | - Cinzia Montinaro
- Center for Biomolecular Nanotechnologies, Istituto Italiano di Tecnologia, Arnesano, Italy
| | - Barbara Spagnolo
- Center for Biomolecular Nanotechnologies, Istituto Italiano di Tecnologia, Arnesano, Italy
| | | | - Filippo Pisano
- Center for Biomolecular Nanotechnologies, Istituto Italiano di Tecnologia, Arnesano, Italy
- Dipartimento di Fisica e Astronomia 'Galileo Galilei', Università di Padova, Padova, Italy
| | - Bernardo L Sabatini
- Department of Neurobiology, Howard Hughes Medical Institute, Harvard Medical School, Boston, MA, USA
| | - Massimo De Vittorio
- Center for Biomolecular Nanotechnologies, Istituto Italiano di Tecnologia, Arnesano, Italy.
- Dipartimento di Ingegneria dell'Innovazione, Università del Salento, Lecce, Italy.
| | - Ferruccio Pisanello
- Center for Biomolecular Nanotechnologies, Istituto Italiano di Tecnologia, Arnesano, Italy.
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6
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Meneghetti M, Wang J, Sui K, Berg RW, Markos C. Soft biocompatible polymer optical fiber tapers for implantable neural devices. OPTICS LETTERS 2025; 50:670-673. [PMID: 39815589 DOI: 10.1364/ol.546470] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2024] [Accepted: 11/21/2024] [Indexed: 01/18/2025]
Abstract
Optical fibers are between the most common implantable devices for delivering light in the nervous system for optogenetics and infrared neural stimulation applications. Tapered optical fibers, in particular, can offer homogeneous light delivery to a large volume and spatially resolved illumination compared to standard flat-cleaved fibers while being minimally invasive. However, the use of tapers for neural applications has up to now been limited to silica optical fibers, whose large Young's modulus can cause detrimental foreign body response in chronic settings. Here, we present the fabrication and optimization of tapered fiber implants based on polymer optical fibers (POFs). After numerically determining the optimal materials and taper geometry, we fabricated two types of POFs by thermal fiber drawing. The fabrication of the taper was achieved by chemical etching of the fibers, for which several solvents previously reported in literature have been tested. The influence of different parameters on the etching process and on the quality of the obtained tapers was also investigated. The large illumination volume of the produced high-quality taper-based implants was finally tested in vitro in a brain phantom.
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7
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Boissonneault W, Lemieux M, Bretzner F, Galstian T. Motion-less depth-selective optogenetic probe using tapered fiber and an electrically tuneable liquid crystal steering element. BIOMEDICAL OPTICS EXPRESS 2025; 16:68-83. [PMID: 39816139 PMCID: PMC11729293 DOI: 10.1364/boe.544388] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/08/2024] [Revised: 11/19/2024] [Accepted: 11/20/2024] [Indexed: 01/18/2025]
Abstract
A miniature electrically tuneable liquid crystal component is used to steer light from -1° to +1° and then to inject into a simple tapered fiber. This allows the generation of various propagation modes, their leakage, and selective illumination of the surrounding medium at different depth levels without using mechanical movements nor deformation. The performance of the device is characterized in a reference fluorescence medium (Rhodamine 6G) as well as in a mouse brain (medullary reticular formation and mesencephalic locomotor regions) during in-vivo experiments as a proof of concept. This device may be further miniaturized to be applied to freely behaving animals for the dynamic selective excitation or inhibition of different brain regions.
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Affiliation(s)
- William Boissonneault
- Center for Optics, Photonics and Lasers, Department of Physics, Engineering Physics and Optics, Université Laval, 2375 Rue de la Terrasse, Québec, Québec G1V 0A6, Canada
| | - Maxime Lemieux
- Centre de Recherche du CHU de Québec, CHUL-Neurosciences, Québec (QC), Canada
| | - Frédéric Bretzner
- Centre de Recherche du CHU de Québec, CHUL-Neurosciences, Québec (QC), Canada
| | - Tigran Galstian
- Center for Optics, Photonics and Lasers, Department of Physics, Engineering Physics and Optics, Université Laval, 2375 Rue de la Terrasse, Québec, Québec G1V 0A6, Canada
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8
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Kafrashian Z, Brück S, Rogin P, Khamdan M, Farrukh HSUB, Pearson S, del Campo A. Segmented, Side-Emitting Hydrogel Optical Fibers for Multimaterial Extrusion Printing. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2025; 37:e2309166. [PMID: 39632473 PMCID: PMC11775871 DOI: 10.1002/adma.202309166] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2023] [Revised: 11/14/2024] [Indexed: 12/07/2024]
Abstract
Side-emitting optical fibers allow light to be deliberately outcoupled along the fiber. Introducing a customized side-emission profile requires modulation of the guiding and emitting properties along the fiber length, which is a particular challenge in continuous processing of soft waveguides. In this work, it is demonstrated that multimaterial extrusion printing can generate hydrogel optical fibers with tailored segments for light-side emission. The fibers are based on diacrylated Pluronic F-127 (PluDA). 1 mm diameter fibers are printed with segments of different optical properties by switching between a PluDA waveguiding ink and a PluDA scattering ink containing nanoparticles. The method allows the fabrication of fibers with segment lengths below 500 microns in a continuous process. The length of the segments is tailored by varying the switching time between inks during printing. Fibers with customized side-emission profiles along their length are presented. The functionality of the printed fibers is demonstrated by exciting fluorescence inside a surrounding 3D hydrogel. The presented technology and material combination allow unprecedented flexibility for designing soft optical fibers with customizable optical properties using simple processes and a medical material. This approach can be of interest to improve illumination inside tissues for photodynamic therapy (PDT).
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Affiliation(s)
- Zahra Kafrashian
- INM – Leibniz Institute for New MaterialsCampus D2 266123SaarbrückenGermany
- Saarland UniversityChemistry Department66123SaarbrückenGermany
| | - Stefan Brück
- INM – Leibniz Institute for New MaterialsCampus D2 266123SaarbrückenGermany
| | - Peter Rogin
- INM – Leibniz Institute for New MaterialsCampus D2 266123SaarbrückenGermany
| | - Mokhamad Khamdan
- INM – Leibniz Institute for New MaterialsCampus D2 266123SaarbrückenGermany
| | - Hafiz Syed Usama Bin Farrukh
- INM – Leibniz Institute for New MaterialsCampus D2 266123SaarbrückenGermany
- Saarland UniversityChemistry Department66123SaarbrückenGermany
| | - Samuel Pearson
- INM – Leibniz Institute for New MaterialsCampus D2 266123SaarbrückenGermany
| | - Aránzazu del Campo
- INM – Leibniz Institute for New MaterialsCampus D2 266123SaarbrückenGermany
- Saarland UniversityChemistry Department66123SaarbrückenGermany
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9
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Andriani MS, Bianco M, Montinaro C, Balena A, Pisanello M, Pisano F, Vittorio MD, Pisanello F. Low-NA two-photon lithography patterning of metal/dielectric tapered optical fibers for depth-selective, volumetric optical neural interfaces. OPTICS EXPRESS 2024; 32:48772-48785. [PMID: 39876173 DOI: 10.1364/oe.541017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2024] [Accepted: 10/28/2024] [Indexed: 01/30/2025]
Abstract
Optical neural implants allow neuroscientists to access deep brain regions, enabling to decipher complex patterns of neural activity. In this field, the use of optical fibers is rapidly increasing, and the ability to generate high-quality metal patterns on their non-planar surface would further extend their application. Here, we propose to use alternating metal shielding and dielectric confinement to engineer the mode-division properties of tapered optical fiber neural implants. This is accomplished through an unconventional application of two-photon lithography (TPL), which employs a low-numerical aperture objective to pattern extensive waveguide sections at both low and high curvature radii. The low-NA TPL is used to polymerize a mask of photoresist, while the rest of the taper undergoes wet metal etching. This implies no direct destructive interaction between the laser beam and the metal to be removed, preserving the optical properties of the dielectric waveguide and of the metal coating. The advantages provided by the presented fabrication method, combined with the intrinsic modal properties of the dielectric waveguide, enable the engineering of the light guiding mechanisms, achieving depth-selective light delivery with a high extinction ratio. The device's light emission and collection properties were investigated in quasi-transparent media and highly scattering brain slices, finding that our proposed method facilitates 360° symmetric light collection around the dielectric-confined section with depth resolution. This opens a perspective for the realization of optical neural implants that can interface the implant axis all-around, with low-NA TPL that can also be applied on other types of non-planar surfaces.
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10
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Chen FD, Sharma A, Xue T, Jung Y, Govdeli A, Mak JCC, Chameh HM, Movahed M, Brunk MGK, Luo X, Chua H, Lo PGQ, Valiante TA, Sacher WD, Poon JKS. Implantable silicon neural probes with nanophotonic phased arrays for single-lobe beam steering. COMMUNICATIONS ENGINEERING 2024; 3:182. [PMID: 39695300 DOI: 10.1038/s44172-024-00328-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2024] [Accepted: 11/26/2024] [Indexed: 12/20/2024]
Abstract
In brain activity mapping with optogenetics, patterned illumination is crucial for targeted neural stimulation. However, due to optical scattering in brain tissue, light-emitting implants are needed to bring patterned illumination to deep brain regions. A promising solution is silicon neural probes with integrated nanophotonic circuits that form tailored beam patterns without lenses. Here we propose neural probes with grating-based light emitters that generate a single steerable beam. The light emitters, optimized for blue or amber light, combine end-fire optical phased arrays with slab gratings to suppress higher-order sidelobes. In vivo experiments in mice demonstrated that the optical phased array provided sufficient power for optogenetic stimulation. While beam steering performance in tissue reveals challenges, including beam broadening from scattering and the need for a wider steering range, this proof-of-concept demonstration illustrates the design principles for realizing compact optical phased arrays capable of continuous single-beam scanning, laying the groundwork for advancing optical phased arrays toward targeted optogenetic stimulation.
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Affiliation(s)
- Fu-Der Chen
- Max Planck Institute of Microstructure Physics, Halle, Germany.
- Department of Electrical and Computer Engineering, University of Toronto, Toronto, ON, Canada.
- Max Planck-University of Toronto Centre for Neural Science and Technology, Toronto, ON, Canada.
| | - Ankita Sharma
- Max Planck Institute of Microstructure Physics, Halle, Germany.
- Department of Electrical and Computer Engineering, University of Toronto, Toronto, ON, Canada.
- Max Planck-University of Toronto Centre for Neural Science and Technology, Toronto, ON, Canada.
| | - Tianyuan Xue
- Max Planck Institute of Microstructure Physics, Halle, Germany
- Department of Electrical and Computer Engineering, University of Toronto, Toronto, ON, Canada
| | - Youngho Jung
- Max Planck Institute of Microstructure Physics, Halle, Germany
| | - Alperen Govdeli
- Max Planck Institute of Microstructure Physics, Halle, Germany
- Department of Electrical and Computer Engineering, University of Toronto, Toronto, ON, Canada
| | - Jason C C Mak
- Department of Electrical and Computer Engineering, University of Toronto, Toronto, ON, Canada
| | | | - Mandana Movahed
- Krembil Brain Institute, University Health Network, Toronto, ON, Canada
| | - Michael G K Brunk
- Max Planck Institute of Microstructure Physics, Halle, Germany
- Max Planck-University of Toronto Centre for Neural Science and Technology, Toronto, ON, Canada
| | - Xianshu Luo
- Advanced Micro Foundry Pte. Ltd., Singapore Science Park II, Singapore
| | - Hongyao Chua
- Advanced Micro Foundry Pte. Ltd., Singapore Science Park II, Singapore
| | | | - Taufik A Valiante
- Department of Electrical and Computer Engineering, University of Toronto, Toronto, ON, Canada
- Max Planck-University of Toronto Centre for Neural Science and Technology, Toronto, ON, Canada
- Krembil Brain Institute, University Health Network, Toronto, ON, Canada
- Division of Neurosurgery, Department of Surgery, Toronto Western Hospital, University of Toronto, Toronto, ON, Canada
- Institute of Biomedical Engineering, University of Toronto, Toronto, ON, Canada
| | - Wesley D Sacher
- Max Planck Institute of Microstructure Physics, Halle, Germany
- Max Planck-University of Toronto Centre for Neural Science and Technology, Toronto, ON, Canada
| | - Joyce K S Poon
- Max Planck Institute of Microstructure Physics, Halle, Germany.
- Department of Electrical and Computer Engineering, University of Toronto, Toronto, ON, Canada.
- Max Planck-University of Toronto Centre for Neural Science and Technology, Toronto, ON, Canada.
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11
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Mai BT, Fernandez‐Cabada T, Conteh JS, Nucci GE, Fiorito S, Gavilán H, Debellis D, Gjurgjaj L, Pellegrino T. Nanoplatforms for Magnetic-Photo-Heating of Thermo-Resistant Tumor Cells: Singular Synergic Therapeutic Effects at Mild Temperature. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2024; 20:e2310522. [PMID: 39466969 PMCID: PMC11657026 DOI: 10.1002/smll.202310522] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2024] [Revised: 09/24/2024] [Indexed: 10/30/2024]
Abstract
A self-assemble amphiphilic diblock copolymer that can incorporate iron oxide nanocubes (IONCs) in chain-like assemblies as heat mediators for magnetic hyperthermia (MHT) and tuneable amounts of IR780 dye as agent for photothermal therapy (PTT) is developed. MHT-heating performance of photobeads in viscous media have the same heat performances in water at magnetic field conditions of clinical use. Thanks to IR780, the photobeads are activated by infrared laser light within the first biological window (808 nm) with a significant enhancement of photo-stability of IR780 enabling the raise of the temperature at therapeutic values during multiple PTT cycles and showing unchanged optical features up to 8 days. Moreover, the photobeads fluorescent signal is preserved once internalized by glioblastoma multiforme (GBM) cells. Peculiarly, the photobeads are used as toxic agents to eradicate thermo-resistant GBM cells at mild heat, as low as 41 °C, with MHT and PTT both of clinical use. Indeed, a high U87 GBM cell mortality percentage is obtained only with dual MHT/PTT while each single treatment dose not provide the same cytotoxic effects. Only for the combined treatment, the cell death mechanism is assigned to clear sign of apoptosis as observed by structural/morphological cell studies and enhanced lysosome permeability.
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Affiliation(s)
- Binh T. Mai
- Italian Institute of Technologyvia Morego 30Genoa16163Italy
- Present address:
School of Biological and Chemical SciencesUniversity of GalwayUniversity RoadGalwayH91 TK33Ireland
| | - Tamara Fernandez‐Cabada
- Italian Institute of Technologyvia Morego 30Genoa16163Italy
- Present address:
Institut de Biotecnologia i de BiomedicinaUniversidad Autónoma de Barcelona (IBB‐UAB)Universitat Autònoma de BarcelonaEdifici MRB, Carrer de la Vinya, s/n. CampusCerdanyola del VallèsBarcelona08193Spain
| | - John S. Conteh
- Italian Institute of Technologyvia Morego 30Genoa16163Italy
| | | | - Sergio Fiorito
- Italian Institute of Technologyvia Morego 30Genoa16163Italy
| | - Helena Gavilán
- Italian Institute of Technologyvia Morego 30Genoa16163Italy
- Present address:
Departamento de Química FísicaUniversidad Complutense de MadridMadridSpain
| | | | - Lorenci Gjurgjaj
- Italian Institute of Technologyvia Morego 30Genoa16163Italy
- The Open University Affiliated Research CenterItalian Institute of Technologyvia Morego 30Genoa16163Italy
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12
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Lin S, Gillis WF, Weinreb C, Zeine A, Jones SC, Robinson EM, Markowitz J, Datta SR. Characterizing the structure of mouse behavior using Motion Sequencing. Nat Protoc 2024; 19:3242-3291. [PMID: 38926589 PMCID: PMC11552546 DOI: 10.1038/s41596-024-01015-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2022] [Accepted: 04/12/2024] [Indexed: 06/28/2024]
Abstract
Spontaneous mouse behavior is composed from repeatedly used modules of movement (e.g., rearing, running or grooming) that are flexibly placed into sequences whose content evolves over time. By identifying behavioral modules and the order in which they are expressed, researchers can gain insight into the effect of drugs, genes, context, sensory stimuli and neural activity on natural behavior. Here we present a protocol for performing Motion Sequencing (MoSeq), an ethologically inspired method that uses three-dimensional machine vision and unsupervised machine learning to decompose spontaneous mouse behavior into a series of elemental modules called 'syllables'. This protocol is based upon a MoSeq pipeline that includes modules for depth video acquisition, data preprocessing and modeling, as well as a standardized set of visualization tools. Users are provided with instructions and code for building a MoSeq imaging rig and acquiring three-dimensional video of spontaneous mouse behavior for submission to the modeling framework; the outputs of this protocol include syllable labels for each frame of the video data as well as summary plots describing how often each syllable was used and how syllables transitioned from one to the other. In addition, we provide instructions for analyzing and visualizing the outputs of keypoint-MoSeq, a recently developed variant of MoSeq that can identify behavioral motifs from keypoints identified from standard (rather than depth) video. This protocol and the accompanying pipeline significantly lower the bar for users without extensive computational ethology experience to adopt this unsupervised, data-driven approach to characterize mouse behavior.
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Affiliation(s)
- Sherry Lin
- Department of Neurobiology, Harvard Medical School, Boston, MA, USA
| | | | - Caleb Weinreb
- Department of Neurobiology, Harvard Medical School, Boston, MA, USA
| | - Ayman Zeine
- Department of Neurobiology, Harvard Medical School, Boston, MA, USA
| | - Samuel C Jones
- Department of Neurobiology, Harvard Medical School, Boston, MA, USA
| | - Emma M Robinson
- Department of Neurobiology, Harvard Medical School, Boston, MA, USA
| | - Jeffrey Markowitz
- Department of Neurobiology, Harvard Medical School, Boston, MA, USA
- Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, USA
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13
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Du Y, Dylda E, Stibůrek M, Gomes AD, Turtaev S, Pakan JMP, Čižmár T. Advancing the path to in-vivo imaging in freely moving mice via multimode-multicore fiber based holographic endoscopy. NEUROPHOTONICS 2024; 11:S11506. [PMID: 38352728 PMCID: PMC10863504 DOI: 10.1117/1.nph.11.s1.s11506] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/30/2023] [Revised: 01/17/2024] [Accepted: 01/22/2024] [Indexed: 02/16/2024]
Abstract
Significance Hair-thin multimode optical fiber-based holographic endoscopes have gained considerable interest in modern neuroscience for their ability to achieve cellular and even subcellular resolution during in-vivo deep brain imaging. However, the application of multimode fibers in freely moving animals presents a persistent challenge as it is difficult to maintain optimal imaging performance while the fiber undergoes deformations. Aim We propose a fiber solution for challenging in-vivo applications with the capability of deep brain high spatial resolution imaging and neuronal activity monitoring in anesthetized as well as awake behaving mice. Approach We used our previously developed M 3 CF multimode-multicore fiber to record fluorescently labeled neurons in anesthetized mice. Our M 3 CF exhibits a cascaded refractive index structure, enabling two distinct regimes of light transport that imitate either a multimode or a multicore fiber. The M 3 CF has been specifically designed for use in the initial phase of an in-vivo experiment, allowing for the navigation of the endoscope's distal end toward the targeted brain structure. The multicore regime enables the transfer of light to and from each individual neuron within the field of view. For chronic experiments in awake behaving mice, it is crucial to allow for disconnecting the fiber and the animal between experiments. Therefore, we provide here an effective solution and establish a protocol for reconnection of two segments of M 3 CF with hexagonally arranged corelets. Results We successfully utilized the M 3 CF to image neurons in anaesthetized transgenic mice expressing enhanced green fluorescent protein. Additionally, we compared imaging results obtained with the M 3 CF with larger numerical aperture (NA) fibers in fixed whole-brain tissue. Conclusions This study focuses on addressing challenges and providing insights into the use of multimode-multicore fibers as imaging solutions for in-vivo applications. We suggest that the upcoming version of the M 3 CF increases the overall NA between the two cladding layers to allow for access to high resolution spatial imaging. As the NA increases in the multimode regime, the fiber diameter and ring structure must be reduced to minimize the computational burden and invasiveness.
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Affiliation(s)
- Yang Du
- University of Chinese Academy of Sciences, Hangzhou Institute for Advanced Study, Hangzhou, China
- Leibniz Institute of Photonic Technology, Jena, Germany
| | - Evelyn Dylda
- Otto-von-Guericke-University Magdeburg, Institute of Cognitive Neurology and Dementia Research, Magdeburg, Germany
- Center for Behavioral Brain Sciences, Magdeburg, Germany
| | | | - André D Gomes
- Leibniz Institute of Photonic Technology, Jena, Germany
| | | | - Janelle M. P. Pakan
- Otto-von-Guericke-University Magdeburg, Institute of Cognitive Neurology and Dementia Research, Magdeburg, Germany
- Center for Behavioral Brain Sciences, Magdeburg, Germany
- German Centre for Neurodegenerative Diseases, Magdeburg, Germany
- Leibniz Institute for Neurobiology, Magdeburg, Germany
| | - Tomáš Čižmár
- Leibniz Institute of Photonic Technology, Jena, Germany
- Institute of Scientific Instruments of CAS, Brno, Czechia
- Friedrich Schiller University Jena, Institute of Applied Optics, Jena, Germany
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14
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Yang Z, Inagaki M, Gerfen CR, Fontolan L, Inagaki HK. Integrator dynamics in the cortico-basal ganglia loop underlie flexible motor timing. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.06.29.601348. [PMID: 39005437 PMCID: PMC11244898 DOI: 10.1101/2024.06.29.601348] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/16/2024]
Abstract
Flexible control of motor timing is crucial for behavior. Before volitional movement begins, the frontal cortex and striatum exhibit ramping spiking activity, with variable ramp slopes anticipating movement onsets. This activity in the cortico-basal ganglia loop may function as an adjustable 'timer,' triggering actions at the desired timing. However, because the frontal cortex and striatum share similar ramping dynamics and are both necessary for timing behaviors, distinguishing their individual roles in this timer function remains challenging. To address this, we conducted perturbation experiments combined with multi-regional electrophysiology in mice performing a flexible lick-timing task. Following transient silencing of the frontal cortex, cortical and striatal activity swiftly returned to pre-silencing levels and resumed ramping, leading to a shift in lick timing close to the silencing duration. Conversely, briefly inhibiting the striatum caused a gradual decrease in ramping activity in both regions, with ramping resuming from post-inhibition levels, shifting lick timing beyond the inhibition duration. Thus, inhibiting the frontal cortex and striatum effectively paused and rewound the timer, respectively. These findings suggest the striatum is a part of the network that temporally integrates input from the frontal cortex and generates ramping activity that regulates motor timing.
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15
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Rimoli CV, Moretti C, Soldevila F, Brémont E, Ventalon C, Gigan S. Demixing fluorescence time traces transmitted by multimode fibers. Nat Commun 2024; 15:6286. [PMID: 39060262 PMCID: PMC11282286 DOI: 10.1038/s41467-024-50306-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Accepted: 07/05/2024] [Indexed: 07/28/2024] Open
Abstract
Optical methods based on thin multimode fibers (MMFs) are promising tools for measuring neuronal activity in deep brain regions of freely moving mice thanks to their small diameter. However, current methods are limited: while fiber photometry provides only ensemble activity, imaging techniques using of long multimode fibers are very sensitive to bending and have not been applied to unrestrained rodents yet. Here, we demonstrate the fundamentals of a new approach using a short MMF coupled to a miniscope. In proof-of-principle in vitro experiments, we disentangled spatio-temporal fluorescence signals from multiple fluorescent sources transmitted by a thin (200 µm) and short (8 mm) MMF, using a general unconstrained non-negative matrix factorization algorithm directly on the raw video data. Furthermore, we show that low-cost open-source miniscopes have sufficient sensitivity to image the same fluorescence patterns seen in our proof-of-principle experiment, suggesting a new avenue for novel minimally invasive deep brain studies using multimode fibers in freely behaving mice.
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Affiliation(s)
- Caio Vaz Rimoli
- Laboratoire Kastler Brossel, ENS-Université PSL, CNRS, Sorbonne Université, Collège de France, 24 Rue Lhomond, Paris, F-75005, France
- Institut de Biologie de l'ENS (IBENS), Département de biologie, École normale supérieure, CNRS, INSERM, Université PSL, 75005, Paris, France
| | - Claudio Moretti
- Laboratoire Kastler Brossel, ENS-Université PSL, CNRS, Sorbonne Université, Collège de France, 24 Rue Lhomond, Paris, F-75005, France
| | - Fernando Soldevila
- Laboratoire Kastler Brossel, ENS-Université PSL, CNRS, Sorbonne Université, Collège de France, 24 Rue Lhomond, Paris, F-75005, France
| | - Enora Brémont
- Institut de Biologie de l'ENS (IBENS), Département de biologie, École normale supérieure, CNRS, INSERM, Université PSL, 75005, Paris, France
| | - Cathie Ventalon
- Institut de Biologie de l'ENS (IBENS), Département de biologie, École normale supérieure, CNRS, INSERM, Université PSL, 75005, Paris, France.
| | - Sylvain Gigan
- Laboratoire Kastler Brossel, ENS-Université PSL, CNRS, Sorbonne Université, Collège de France, 24 Rue Lhomond, Paris, F-75005, France.
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16
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Da Y, Sun Q, Zhang L, Tian Y. Light-activated g-C 3N 4 photoelectrodes with a selective molecular sieve for in vivo quantification of oxygen levels in the living mouse brain. Chem Commun (Camb) 2024. [PMID: 38465876 DOI: 10.1039/d4cc00246f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/12/2024]
Abstract
A novel micro-photoelectrode with a selective molecular sieve was created for in vivo monitoring of O2 levels in the mouse brain. An ITO optical fiber modified by graphitized carbon nitride (g-C3N4) in situ was employed as the light activated substrate to provide rich photo-induced electrons for the catalytic reduction of O2. Meanwhile, the porous hybrid layer composed of zeolitic imidazolate framework-8 and polysulfone was constructed over the g-C3N4 surface as the molecular sieve to synergically enhance the selectivity of O2 detections. By advantage of this useful tool, the real time variation of the O2 level was successfully determined in the mouse brain upon ischemia.
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Affiliation(s)
- Yifan Da
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, Department of Chemistry, School of Chemistry and Molecular Engineering, East China Normal University, Dongchuan Road 500, Shanghai 200241, China.
| | - Qi Sun
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, Department of Chemistry, School of Chemistry and Molecular Engineering, East China Normal University, Dongchuan Road 500, Shanghai 200241, China.
| | - Limin Zhang
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, Department of Chemistry, School of Chemistry and Molecular Engineering, East China Normal University, Dongchuan Road 500, Shanghai 200241, China.
| | - Yang Tian
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, Department of Chemistry, School of Chemistry and Molecular Engineering, East China Normal University, Dongchuan Road 500, Shanghai 200241, China.
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17
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Issa JB, Radvansky BA, Xuan F, Dombeck DA. Lateral entorhinal cortex subpopulations represent experiential epochs surrounding reward. Nat Neurosci 2024; 27:536-546. [PMID: 38272968 PMCID: PMC11097142 DOI: 10.1038/s41593-023-01557-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2023] [Accepted: 12/13/2023] [Indexed: 01/27/2024]
Abstract
During goal-directed navigation, 'what' information, describing the experiences occurring in periods surrounding a reward, can be combined with spatial 'where' information to guide behavior and form episodic memories. This integrative process likely occurs in the hippocampus, which receives spatial information from the medial entorhinal cortex; however, the source of the 'what' information is largely unknown. Here, we show that mouse lateral entorhinal cortex (LEC) represents key experiential epochs during reward-based navigation tasks. We discover separate populations of neurons that signal goal approach and goal departure and a third population signaling reward consumption. When reward location is moved, these populations immediately shift their respective representations of each experiential epoch relative to reward, while optogenetic inhibition of LEC disrupts learning the new reward location. Therefore, the LEC contains a stable code of experiential epochs surrounding and including reward consumption, providing reward-centric information to contextualize the spatial information carried by the medial entorhinal cortex.
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Affiliation(s)
- John B Issa
- Department of Neurobiology, Northwestern University, Evanston, IL, USA
| | - Brad A Radvansky
- Department of Neurobiology, Northwestern University, Evanston, IL, USA
| | - Feng Xuan
- Department of Neurobiology, Northwestern University, Evanston, IL, USA
| | - Daniel A Dombeck
- Department of Neurobiology, Northwestern University, Evanston, IL, USA.
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18
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Issa JB, Radvansky BA, Xuan F, Dombeck DA. Lateral entorhinal cortex subpopulations represent experiential epochs surrounding reward. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.10.09.561557. [PMID: 37873482 PMCID: PMC10592707 DOI: 10.1101/2023.10.09.561557] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/25/2023]
Abstract
During goal-directed navigation, "what" information, which describes the experiences occurring in periods surrounding a reward, can be combined with spatial "where" information to guide behavior and form episodic memories1,2. This integrative process is thought to occur in the hippocampus3, which receives spatial information from the medial entorhinal cortex (MEC)4; however, the source of the "what" information and how it is represented is largely unknown. Here, by establishing a novel imaging method, we show that the lateral entorhinal cortex (LEC) of mice represents key experiential epochs during a reward-based navigation task. We discover a population of neurons that signals goal approach and a separate population of neurons that signals goal departure. A third population of neurons signals reward consumption. When reward location is moved, these populations immediately shift their respective representations of each experiential epoch relative to reward, while optogenetic inhibition of LEC disrupts learning of the new reward location. Together, these results indicate the LEC provides a stable code of experiential epochs surrounding and including reward consumption, providing reward-centric information to contextualize the spatial information carried by the MEC. Such parallel representations are well-suited for generating episodic memories of rewarding experiences and guiding flexible and efficient goal-directed navigation5-7.
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Affiliation(s)
- John B. Issa
- Department of Neurobiology, Northwestern University, Evanston, IL 60608, USA
| | - Brad A. Radvansky
- Department of Neurobiology, Northwestern University, Evanston, IL 60608, USA
| | - Feng Xuan
- Department of Neurobiology, Northwestern University, Evanston, IL 60608, USA
| | - Daniel A. Dombeck
- Department of Neurobiology, Northwestern University, Evanston, IL 60608, USA
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19
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Zhang Z, Liu Z, Wu P, Guo X, Luo X, Yang Y, Chen J, Tian Y. A High-Density Raman Photometry for Tracking and Quantifying of AchE Activity in The Brain of Freely Moving Animals with Network. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2023; 10:e2301004. [PMID: 37635166 PMCID: PMC10582456 DOI: 10.1002/advs.202301004] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Revised: 07/22/2023] [Indexed: 08/29/2023]
Abstract
A high-density Raman photometry based on a dual-recognition strategy is created for accurately quantifying acetylcholinesterase (AchE) activity in 24 brain regions of free-moving animals with network. A series of 5-ethynyl-1,2,3,3-tetramethyl-based molecules with different conjugated structures and substitute groups are designed and synthesized for specific recognition of AchE by Raman spectroscopy. After systematically evaluating the recognition ability toward AchE, 2-(4-((4-(dimethylamino)benzoyl)oxy)styryl)-5-ethynyl-1,3,3-trimethyl-3H-indol-1-ium (ET-5) is finally optimized for AchE determination, which shows the highest selectivity, the greatest sensitivity, and the fastest response time among the investigated seven molecules. More interestingly, using the developed probe for AchE with high accuracy and sensitivity, the optimized AchE regulated by nitric oxide (NO) is discovered for promoting the neurogenesis of neural stem cells (NSCs). Benefiting from the high-density photometry, it is found that the activity and distribution of AchE varied in 24 brain regions, and the levels of AchE activity in 24 brain regions of Alzheimer's mice (AD) are lower than those of normal mice. It is the first time that a functional network of AchE in 24 brain regions is established. It is also found that the loss of AchE functional network in AD mice is restored and reconstructed by the controlled release of AchE regulated by NO.
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Affiliation(s)
- Zhonghui Zhang
- Shanghai Key Laboratory of Green Chemistry and Chemical ProcessesSchool of Chemistry and Molecular EngineeringEast China Normal UniversityDongchuan Road 500Shanghai200241P.R. China
| | - Zhichao Liu
- Shanghai Key Laboratory of Green Chemistry and Chemical ProcessesSchool of Chemistry and Molecular EngineeringEast China Normal UniversityDongchuan Road 500Shanghai200241P.R. China
| | - Peicong Wu
- State Key Laboratory of Precision SpectroscopyEast China Normal UniversityDongchuan Road 500Shanghai200241P.R. China
| | - Xinhua Guo
- State Key Laboratory of Supramolecular Structure and MaterialsCollege of Chemistry and Key Laboratory for Molecular Enzymology and Engineering of the Ministry of EducationCollege of Life ScienceJilin UniversityQianjin Road 2699Changchun130012P.R. China
| | - Xiao Luo
- Shanghai Key Laboratory of Green Chemistry and Chemical ProcessesSchool of Chemistry and Molecular EngineeringEast China Normal UniversityDongchuan Road 500Shanghai200241P.R. China
| | - Youjun Yang
- State Key Laboratory of Bioreactor EngineeringShanghai Key Laboratory of Chemical BiologySchool of PharmacyEast China University of Science and TechnologyMeilong Road 130Shanghai200237P.R. China
| | - Jinquan Chen
- State Key Laboratory of Precision SpectroscopyEast China Normal UniversityDongchuan Road 500Shanghai200241P.R. China
| | - Yang Tian
- Shanghai Key Laboratory of Green Chemistry and Chemical ProcessesSchool of Chemistry and Molecular EngineeringEast China Normal UniversityDongchuan Road 500Shanghai200241P.R. China
- State Key Laboratory of Precision SpectroscopyEast China Normal UniversityDongchuan Road 500Shanghai200241P.R. China
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20
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Xu S, Momin M, Ahmed S, Hossain A, Veeramuthu L, Pandiyan A, Kuo CC, Zhou T. Illuminating the Brain: Advances and Perspectives in Optoelectronics for Neural Activity Monitoring and Modulation. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2023; 35:e2303267. [PMID: 37726261 DOI: 10.1002/adma.202303267] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2023] [Revised: 05/30/2023] [Indexed: 09/21/2023]
Abstract
Optogenetic modulation of brain neural activity that combines optical and electrical modes in a unitary neural system has recently gained robust momentum. Controlling illumination spatial coverage, designing light-activated modulators, and developing wireless light delivery and data transmission are crucial for maximizing the use of optical neuromodulation. To this end, biocompatible electrodes with enhanced optoelectrical performance, device integration for multiplexed addressing, wireless transmission, and multimodal operation in soft systems have been developed. This review provides an outlook for uniformly illuminating large brain areas while spatiotemporally imaging the neural responses upon optoelectrical stimulation with little artifacts. Representative concepts and important breakthroughs, such as head-mounted illumination, multiple implanted optical fibers, and micro-light-delivery devices, are discussed. Examples of techniques that incorporate electrophysiological monitoring and optoelectrical stimulation are presented. Challenges and perspectives are posed for further research efforts toward high-density optoelectrical neural interface modulation, with the potential for nonpharmacological neurological disease treatments and wireless optoelectrical stimulation.
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Affiliation(s)
- Shumao Xu
- Department of Engineering Science and Mechanics, Center for Neural Engineering, The Pennsylvania State University, Pennsylvania, 16802, USA
| | - Marzia Momin
- Department of Engineering Science and Mechanics, Center for Neural Engineering, The Pennsylvania State University, Pennsylvania, 16802, USA
| | - Salahuddin Ahmed
- Department of Engineering Science and Mechanics, Center for Neural Engineering, The Pennsylvania State University, Pennsylvania, 16802, USA
| | - Arafat Hossain
- Department of Electrical Engineering, The Pennsylvania State University, Pennsylvania, 16802, USA
| | - Loganathan Veeramuthu
- Department of Molecular Science and Engineering, National Taipei University of Technology, Taipei, 10608, Republic of China
| | - Archana Pandiyan
- Department of Molecular Science and Engineering, National Taipei University of Technology, Taipei, 10608, Republic of China
| | - Chi-Ching Kuo
- Department of Molecular Science and Engineering, National Taipei University of Technology, Taipei, 10608, Republic of China
| | - Tao Zhou
- Department of Engineering Science and Mechanics, Center for Neural Engineering, The Pennsylvania State University, Pennsylvania, 16802, USA
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21
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Deng K, Tang Y, Xiao Y, Zhong D, Zhang H, Fang W, Shen L, Wang Z, Pan J, Lu Y, Chen C, Gao Y, Jin Q, Zhuang L, Wan H, Zhuang L, Wang P, Zhai J, Ren T, Hu Q, Lang M, Zhang Y, Wang H, Zhou M, Gao C, Zhang L, Zhu Y. A biodegradable, flexible photonic patch for in vivo phototherapy. Nat Commun 2023; 14:3069. [PMID: 37244895 PMCID: PMC10224912 DOI: 10.1038/s41467-023-38554-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2022] [Accepted: 05/08/2023] [Indexed: 05/29/2023] Open
Abstract
Diagnostic and therapeutic illumination on internal organs and tissues with high controllability and adaptability in terms of spectrum, area, depth, and intensity remains a major challenge. Here, we present a flexible, biodegradable photonic device called iCarP with a micrometer scale air gap between a refractive polyester patch and the embedded removable tapered optical fiber. ICarP combines the advantages of light diffraction by the tapered optical fiber, dual refractions in the air gap, and reflection inside the patch to obtain a bulb-like illumination, guiding light towards target tissue. We show that iCarP achieves large area, high intensity, wide spectrum, continuous or pulsatile, deeply penetrating illumination without puncturing the target tissues and demonstrate that it supports phototherapies with different photosensitizers. We find that the photonic device is compatible with thoracoscopy-based minimally invasive implantation onto beating hearts. These initial results show that iCarP could be a safe, precise and widely applicable device suitable for internal organs and tissue illumination and associated diagnosis and therapy.
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Affiliation(s)
- Kaicheng Deng
- MOE Key Laboratory of Macromolecular Synthesis and Functionalization, Department of Polymer Science and Engineering, Zhejiang University, Hangzhou, 310027, China
| | - Yao Tang
- Research Center for Humanoid Sensing, Zhejiang Lab, Hangzhou, 311100, China
- State Key Laboratory of Modern Optical Instrumentation, College of Optical Science and Engineering, Zhejiang University, Hangzhou, 310027, China
| | - Yan Xiao
- Shanghai Key Laboratory of Advanced Polymeric Materials, Key Laboratory for Ultrafine Materials of Ministry of Education, School of Materials Science and Engineering, East China University of Science and Technology, Shanghai, 200237, China
| | - Danni Zhong
- Zhejiang University-University of Edinburgh Institute (ZJU-UoE Institute), School of Medicine, Zhejiang University, Haining, 314400, China
| | - Hua Zhang
- College of Animal Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Wen Fang
- MOE Key Laboratory of Macromolecular Synthesis and Functionalization, Department of Polymer Science and Engineering, Zhejiang University, Hangzhou, 310027, China
| | - Liyin Shen
- MOE Key Laboratory of Macromolecular Synthesis and Functionalization, Department of Polymer Science and Engineering, Zhejiang University, Hangzhou, 310027, China
| | - Zhaochuang Wang
- Shanghai Key Laboratory of Advanced Polymeric Materials, Key Laboratory for Ultrafine Materials of Ministry of Education, School of Materials Science and Engineering, East China University of Science and Technology, Shanghai, 200237, China
| | - Jiazhen Pan
- College of Animal Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Yuwen Lu
- MOE Key Laboratory of Macromolecular Synthesis and Functionalization, Department of Polymer Science and Engineering, Zhejiang University, Hangzhou, 310027, China
| | - Changming Chen
- Biosensor National Special Laboratory, Key Laboratory for Biomedical Engineering of Education Ministry, Department of Biomedical Engineering, Zhejiang University, Hangzhou, 310027, China
| | - Yun Gao
- College of Animal Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Qiao Jin
- College of Animal Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Lenan Zhuang
- College of Animal Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Hao Wan
- Biosensor National Special Laboratory, Key Laboratory for Biomedical Engineering of Education Ministry, Department of Biomedical Engineering, Zhejiang University, Hangzhou, 310027, China
| | - Liujing Zhuang
- Biosensor National Special Laboratory, Key Laboratory for Biomedical Engineering of Education Ministry, Department of Biomedical Engineering, Zhejiang University, Hangzhou, 310027, China
| | - Ping Wang
- Biosensor National Special Laboratory, Key Laboratory for Biomedical Engineering of Education Ministry, Department of Biomedical Engineering, Zhejiang University, Hangzhou, 310027, China
| | - Junfeng Zhai
- Institute of Plant Quarantine, Chinese Academy of Inspection and Quarantine, Beijing, 100176, China
| | - Tanchen Ren
- Department of Cardiology, Cardiovascular Key Laboratory of Zhejiang Province, Second Affiliated Hospital, Zhejiang University, Hangzhou, 310009, China
| | - Qiaoling Hu
- MOE Key Laboratory of Macromolecular Synthesis and Functionalization, Department of Polymer Science and Engineering, Zhejiang University, Hangzhou, 310027, China
| | - Meidong Lang
- Shanghai Key Laboratory of Advanced Polymeric Materials, Key Laboratory for Ultrafine Materials of Ministry of Education, School of Materials Science and Engineering, East China University of Science and Technology, Shanghai, 200237, China
| | - Yue Zhang
- San Francisco Veterans Affairs Medical Center, San Francisco, 94121, USA
| | - Huanan Wang
- College of Animal Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Min Zhou
- State Key Laboratory of Modern Optical Instrumentation, College of Optical Science and Engineering, Zhejiang University, Hangzhou, 310027, China.
- Zhejiang University-University of Edinburgh Institute (ZJU-UoE Institute), School of Medicine, Zhejiang University, Haining, 314400, China.
- Institute of Translational Medicine, Zhejiang University, Hangzhou, 310009, China.
- Key Laboratory of Cancer Prevention and Intervention, National Ministry of Education, Zhejiang University, Hangzhou, 310009, China.
| | - Changyou Gao
- MOE Key Laboratory of Macromolecular Synthesis and Functionalization, Department of Polymer Science and Engineering, Zhejiang University, Hangzhou, 310027, China.
- Dr. Li Dak Sum & Yip Yio Chin Center for Stem Cell and Regenerative Medicine, Zhejiang University, Hangzhou, 310058, China.
| | - Lei Zhang
- Research Center for Humanoid Sensing, Zhejiang Lab, Hangzhou, 311100, China.
- State Key Laboratory of Modern Optical Instrumentation, College of Optical Science and Engineering, Zhejiang University, Hangzhou, 310027, China.
| | - Yang Zhu
- MOE Key Laboratory of Macromolecular Synthesis and Functionalization, Department of Polymer Science and Engineering, Zhejiang University, Hangzhou, 310027, China.
- Binjiang Institute of Zhejiang University, Hangzhou, 310053, China.
- Key Laboratory of Cardiovascular Intervention and Regenerative Medicine of Zhejiang Province, Sir Run Run Shaw Hospital, Zhejiang University, Hangzhou, 310016, China.
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22
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Won SM, Cai L, Gutruf P, Rogers JA. Wireless and battery-free technologies for neuroengineering. Nat Biomed Eng 2023; 7:405-423. [PMID: 33686282 PMCID: PMC8423863 DOI: 10.1038/s41551-021-00683-3] [Citation(s) in RCA: 126] [Impact Index Per Article: 63.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2020] [Accepted: 12/28/2020] [Indexed: 12/16/2022]
Abstract
Tethered and battery-powered devices that interface with neural tissues can restrict natural motions and prevent social interactions in animal models, thereby limiting the utility of these devices in behavioural neuroscience research. In this Review Article, we discuss recent progress in the development of miniaturized and ultralightweight devices as neuroengineering platforms that are wireless, battery-free and fully implantable, with capabilities that match or exceed those of wired or battery-powered alternatives. Such classes of advanced neural interfaces with optical, electrical or fluidic functionality can also combine recording and stimulation modalities for closed-loop applications in basic studies or in the practical treatment of abnormal physiological processes.
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Affiliation(s)
- Sang Min Won
- Department of Electrical and Computer Engineering, Sungkyunkwan University, Suwon, South Korea
| | - Le Cai
- Biomedical Engineering, College of Engineering, The University of Arizona, Tucson, AZ, USA
| | - Philipp Gutruf
- Biomedical Engineering, College of Engineering, The University of Arizona, Tucson, AZ, USA.
- Bio5 Institute and Neuroscience GIDP, University of Arizona, Tucson, AZ, USA.
- Department of Electrical and Computer Engineering, University of Arizona, Tucson, AZ, USA.
| | - John A Rogers
- Department of Materials Science and Engineering, Northwestern University, Evanston, IL, USA.
- Center for Bio-Integrated Electronics, Northwestern University, Evanston, IL, USA.
- Department of Biomedical Engineering, Northwestern University, Evanston, IL, USA.
- Center for Advanced Molecular Imaging, Northwestern University, Evanston, IL, USA.
- Department of Mechanical Engineering, Northwestern University, Evanston, IL, USA.
- Department of Chemistry, Northwestern University, Evanston, IL, USA.
- Department of Neurological Surgery, Northwestern University, Evanston, IL, USA.
- Department of Electrical and Computer Engineering, Northwestern University, Evanston, IL, USA.
- Simpson Querrey Institute for BioNanotechnology, Northwestern University, Evanston, IL, USA.
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23
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Yang F, Kim SJ, Wu X, Cui H, Hahn SK, Hong G. Principles and applications of sono-optogenetics. Adv Drug Deliv Rev 2023; 194:114711. [PMID: 36708773 PMCID: PMC9992299 DOI: 10.1016/j.addr.2023.114711] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2022] [Revised: 01/08/2023] [Accepted: 01/22/2023] [Indexed: 01/26/2023]
Abstract
Optogenetics has revolutionized neuroscience research through its spatiotemporally precise activation of specific neurons by illuminating light on opsin-expressing neurons. A long-standing challenge of in vivo optogenetics arises from the limited penetration depth of visible light in the neural tissue due to scattering and absorption of photons. To address this challenge, sono-optogenetics has been developed to enable spatiotemporally precise light production in a three-dimensional volume of neural tissue by leveraging the deep tissue penetration and focusing ability of ultrasound as well as circulation-delivered mechanoluminescent nanotransducers. Here, we present a comprehensive review of the sono-optogenetics method from the physical principles of ultrasound and mechanoluminescence to its emerging applications for unique neuroscience studies. We also discuss a few promising directions in which sono-optogenetics can make a lasting transformative impact on neuroscience research from the perspectives of mechanoluminescent materials, ultrasound-tissue interaction, to the unique neuroscience opportunities of "scanning optogenetics".
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Affiliation(s)
- Fan Yang
- Department of Materials Science and Engineering, Stanford University, Stanford, CA 94305, USA; Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA 94305, USA
| | - Seong-Jong Kim
- Department of Materials Science and Engineering, Pohang University of Science and Technology (POSTECH), 77 Cheongam-ro, Nam-gu, Pohang, Gyeongbuk 37673, Republic of Korea
| | - Xiang Wu
- Department of Materials Science and Engineering, Stanford University, Stanford, CA 94305, USA; Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA 94305, USA
| | - Han Cui
- Department of Materials Science and Engineering, Stanford University, Stanford, CA 94305, USA; Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA 94305, USA
| | - Sei Kwang Hahn
- Department of Materials Science and Engineering, Pohang University of Science and Technology (POSTECH), 77 Cheongam-ro, Nam-gu, Pohang, Gyeongbuk 37673, Republic of Korea
| | - Guosong Hong
- Department of Materials Science and Engineering, Stanford University, Stanford, CA 94305, USA; Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA 94305, USA.
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24
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Zheng D, Pisano F, Collard L, Balena A, Pisanello M, Spagnolo B, Mach-Batlle R, Tantussi F, Carbone L, De Angelis F, Valiente M, de la Prida LM, Ciracì C, De Vittorio M, Pisanello F. Toward Plasmonic Neural Probes: SERS Detection of Neurotransmitters through Gold-Nanoislands-Decorated Tapered Optical Fibers with Sub-10 nm Gaps. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2023; 35:e2200902. [PMID: 36479741 DOI: 10.1002/adma.202200902] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2022] [Revised: 10/21/2022] [Indexed: 06/17/2023]
Abstract
Integration of plasmonic nanostructures with fiber-optics-based neural probes enables label-free detection of molecular fingerprints via surface-enhanced Raman spectroscopy (SERS), and it represents a fascinating technological horizon to investigate brain function. However, developing neuroplasmonic probes that can interface with deep brain regions with minimal invasiveness while providing the sensitivity to detect biomolecular signatures in a physiological environment is challenging, in particular because the same waveguide must be employed for both delivering excitation light and collecting the resulting scattered photons. Here, a SERS-active neural probe based on a tapered optical fiber (TF) decorated with gold nanoislands (NIs) that can detect neurotransmitters down to the micromolar range is presented. To do this, a novel, nonplanar repeated dewetting technique to fabricate gold NIs with sub-10 nm gaps, uniformly distributed on the wide (square millimeter scale in surface area), highly curved surface of TF is developed. It is experimentally and numerically shown that the amplified broadband near-field enhancement of the high-density NIs layer allows for achieving a limit of detection in aqueous solution of 10-7 m for rhodamine 6G and 10-5 m for serotonin and dopamine through SERS at near-infrared wavelengths. The NIs-TF technology is envisioned as a first step toward the unexplored frontier of in vivo label-free plasmonic neural interfaces.
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Affiliation(s)
- Di Zheng
- Istituto Italiano di Tecnologia, Center for Biomolecular Nanotechnologies, Arnesano, LE, 73010, Italy
| | - Filippo Pisano
- Istituto Italiano di Tecnologia, Center for Biomolecular Nanotechnologies, Arnesano, LE, 73010, Italy
| | - Liam Collard
- Istituto Italiano di Tecnologia, Center for Biomolecular Nanotechnologies, Arnesano, LE, 73010, Italy
| | - Antonio Balena
- Istituto Italiano di Tecnologia, Center for Biomolecular Nanotechnologies, Arnesano, LE, 73010, Italy
| | - Marco Pisanello
- Istituto Italiano di Tecnologia, Center for Biomolecular Nanotechnologies, Arnesano, LE, 73010, Italy
| | - Barbara Spagnolo
- Istituto Italiano di Tecnologia, Center for Biomolecular Nanotechnologies, Arnesano, LE, 73010, Italy
| | - Rosa Mach-Batlle
- Istituto Italiano di Tecnologia, Center for Biomolecular Nanotechnologies, Arnesano, LE, 73010, Italy
| | - Francesco Tantussi
- Istituto Italiano di Tecnologia, Center for Convergent Technologies, Genova, 16163, Italy
| | - Luigi Carbone
- CNR NANOTEC - Institute of Nanotechnology, University of Salento, Lecce, 73100, Italy
| | - Francesco De Angelis
- Istituto Italiano di Tecnologia, Center for Convergent Technologies, Genova, 16163, Italy
| | - Manuel Valiente
- Brain Metastasis Group, Spanish National Cancer Research Center (CNIO), Madrid, 28029, Spain
| | | | - Cristian Ciracì
- Istituto Italiano di Tecnologia, Center for Biomolecular Nanotechnologies, Arnesano, LE, 73010, Italy
| | - Massimo De Vittorio
- Istituto Italiano di Tecnologia, Center for Biomolecular Nanotechnologies, Arnesano, LE, 73010, Italy
- Dipartimento di Ingegneria Dell'Innovazione, Università del Salento, Lecce, 73100, Italy
| | - Ferruccio Pisanello
- Istituto Italiano di Tecnologia, Center for Biomolecular Nanotechnologies, Arnesano, LE, 73010, Italy
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25
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Liang YW, Lai ML, Chiu FM, Tseng HY, Lo YC, Li SJ, Chang CW, Chen PC, Chen YY. Experimental Verification for Numerical Simulation of Thalamic Stimulation-Evoked Calcium-Sensitive Fluorescence and Electrophysiology with Self-Assembled Multifunctional Optrode. BIOSENSORS 2023; 13:265. [PMID: 36832031 PMCID: PMC9953878 DOI: 10.3390/bios13020265] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/23/2022] [Revised: 02/07/2023] [Accepted: 02/10/2023] [Indexed: 06/18/2023]
Abstract
Owing to its capacity to eliminate a long-standing methodological limitation, fiber photometry can assist research gaining novel insight into neural systems. Fiber photometry can reveal artifact-free neural activity under deep brain stimulation (DBS). Although evoking neural potential with DBS is an effective method for mediating neural activity and neural function, the relationship between DBS-evoked neural Ca2+ change and DBS-evoked neural electrophysiology remains unknown. Therefore, in this study, a self-assembled optrode was demonstrated as a DBS stimulator and an optical biosensor capable of concurrently recording Ca2+ fluorescence and electrophysiological signals. Before the in vivo experiment, the volume of tissue activated (VTA) was estimated, and the simulated Ca2+ signals were presented using Monte Carlo (MC) simulation to approach the realistic in vivo environment. When VTA and the simulated Ca2+ signals were combined, the distribution of simulated Ca2+ fluorescence signals matched the VTA region. In addition, the in vivo experiment revealed a correlation between the local field potential (LFP) and the Ca2+ fluorescence signal in the evoked region, revealing the relationship between electrophysiology and the performance of neural Ca2+ concentration behavior. Concurrent with the VTA volume, simulated Ca2+ intensity, and the in vivo experiment, these data suggested that the behavior of neural electrophysiology was consistent with the phenomenon of Ca2+ influx to neurons.
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Affiliation(s)
- Yao-Wen Liang
- Department of Biomedical Engineering, National Yang Ming Chiao Tung University, Taipei 112304, Taiwan
| | - Ming-Liang Lai
- Graduate Institute of Intellectual Property, National Taipei University of Technology, Taipei 10608, Taiwan
| | - Feng-Mao Chiu
- Department of Biomedical Engineering, National Yang Ming Chiao Tung University, Taipei 112304, Taiwan
| | - Hsin-Yi Tseng
- The Ph.D. Program in Medical Neuroscience, College of Medical Science and Technology, Taipei Medical University and National Health Research Institutes, Taipei 11031, Taiwan
| | - Yu-Chun Lo
- The Ph.D. Program in Medical Neuroscience, College of Medical Science and Technology, Taipei Medical University, Taipei 11031, Taiwan
| | - Ssu-Ju Li
- Department of Biomedical Engineering, National Yang Ming Chiao Tung University, Taipei 112304, Taiwan
| | - Ching-Wen Chang
- Department of Biomedical Engineering, National Yang Ming Chiao Tung University, Taipei 112304, Taiwan
| | - Po-Chuan Chen
- School of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta, GA 30332, USA
| | - You-Yin Chen
- Department of Biomedical Engineering, National Yang Ming Chiao Tung University, Taipei 112304, Taiwan
- The Ph.D. Program in Medical Neuroscience, College of Medical Science and Technology, Taipei Medical University, Taipei 11031, Taiwan
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26
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Customizable, wireless and implantable neural probe design and fabrication via 3D printing. Nat Protoc 2023; 18:3-21. [PMID: 36271159 PMCID: PMC10059091 DOI: 10.1038/s41596-022-00758-8] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Accepted: 07/07/2022] [Indexed: 01/14/2023]
Abstract
This Protocol Extension describes the low-cost production of rapidly customizable optical neural probes for in vivo optogenetics. We detail the use of a 3D printer to fabricate minimally invasive microscale inorganic light-emitting-diode-based neural probes that can control neural circuit activity in freely behaving animals, thus extending the scope of two previously published protocols describing the fabrication and implementation of optoelectronic devices for studying intact neural systems. The 3D-printing fabrication process does not require extensive training and eliminates the need for expensive materials, specialized cleanroom facilities and time-consuming microfabrication techniques typical of conventional manufacturing processes. As a result, the design of the probes can be quickly optimized, on the basis of experimental need, reducing the cost and turnaround for customization. For example, 3D-printed probes can be customized to target multiple brain regions or scaled up for use in large animal models. This protocol comprises three procedures: (1) probe fabrication, (2) wireless module preparation and (3) implantation for in vivo assays. For experienced researchers, neural probe and wireless module fabrication requires ~2 d, while implantation should take 30-60 min per animal. Time required for behavioral assays will vary depending on the experimental design and should include at least 5 d of animal handling before implantation of the probe, to familiarize each animal to their handler, thus reducing handling stress that may influence the result of the behavioral assays. The implementation of customized probes improves the flexibility in optogenetic experimental design and increases access to wireless probes for in vivo optogenetic research.
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27
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Patra PH, Tench B, Hitrec T, Holmes F, Drake R, Cerritelli S, Spanswick D, Pickering AE. Pro-Opiomelanocortin (POMC) neurons in the nucleus of the solitary tract mediate endorphinergic endogenous analgesia in mice. Pain 2022; 164:1051-1066. [PMID: 36448978 DOI: 10.1097/j.pain.0000000000002802] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2021] [Accepted: 09/27/2022] [Indexed: 12/02/2022]
Abstract
ABSTRACT The nucleus of the solitary tract (NTS) contains pro-opiomelanocortin (POMC) neurons which are one of the two major sources of β-endorphin in the brain. The functional role of these NTS POMC neurons in nociceptive and cardiorespiratory function is debated. We have shown that NTS POMC optogenetic activation produces bradycardia and transient apnoea in a working heart brainstem preparation and chemogenetic activation with an engineered ion channel (PSAM) produced opioidergic analgesia in vivo . To better define the role of the NTS POMC neurons in behaving animals, we adopted in vivo optogenetics (ChrimsonR) and excitatory/inhibitory chemogenetic DREADD (hM3Dq/hM4Di) strategies in POMC-Cre mice. We show that optogenetic activation of NTS POMC neurons produces time-locked, graded, transient bradycardia and bradypnoea in anaesthetised mice which is naloxone sensitive (1 mg/kg, i.p) suggesting a role of β-endorphin. Both optogenetic and chemogenetic activation of NTS POMC neurons produces sustained thermal analgesia in behaving mice which can be blocked by naloxone. It also produced analgesia in inflammatory pain (carrageenan) but not in a neuropathic pain model (tibial nerve transection). Inhibiting NTS POMC neurons does not produce any effect on basal nociception but inhibits stress-induced analgesia (unlike inhibition of arcuate POMC neurons). Activation of NTS POMC neuronal populations in conscious mice did not cause respiratory depression, anxiety or locomotor deficit (in open field) nor affective preference. These findings indicate that NTS POMC neurons play a key role in the generation of endorphinergic endogenous analgesia and can also regulate cardiorespiratory function.
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Affiliation(s)
- Pabitra Hriday Patra
- Anaesthesia, Pain & Critical Care Research, School of Physiology, Pharmacology and Neuroscience, University of Bristol, BS8 1TD, UK
| | - Becks Tench
- Anaesthesia, Pain & Critical Care Research, School of Physiology, Pharmacology and Neuroscience, University of Bristol, BS8 1TD, UK
| | - Timna Hitrec
- Anaesthesia, Pain & Critical Care Research, School of Physiology, Pharmacology and Neuroscience, University of Bristol, BS8 1TD, UK
| | - Fiona Holmes
- Anaesthesia, Pain & Critical Care Research, School of Physiology, Pharmacology and Neuroscience, University of Bristol, BS8 1TD, UK
| | - Robert Drake
- Anaesthesia, Pain & Critical Care Research, School of Physiology, Pharmacology and Neuroscience, University of Bristol, BS8 1TD, UK
| | - Serena Cerritelli
- Radcliffe Department of Medicine, University of Oxford, John Radcliffe Hospital, Oxford, OX3 9DU, UK
| | - David Spanswick
- Neurosolutions, University of Warwick, Gibbet Hill Road, Coventry, West Midlands, CV4 7AL, UK
| | - Anthony Edward Pickering
- Anaesthesia, Pain & Critical Care Research, School of Physiology, Pharmacology and Neuroscience, University of Bristol, BS8 1TD, UK
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28
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Fernandez-Ruiz A, Oliva A, Chang H. High-resolution optogenetics in space and time. Trends Neurosci 2022; 45:854-864. [PMID: 36192264 DOI: 10.1016/j.tins.2022.09.002] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2022] [Revised: 09/12/2022] [Accepted: 09/13/2022] [Indexed: 10/31/2022]
Abstract
To understand the neural mechanisms of behavior, it is necessary to both monitor and perturb the activity of ensembles of neurons with high specificity. While neural ensemble recordings have been available for decades, progress in high-resolution manipulation techniques has lagged behind. Optogenetics has enabled the manipulation of genetically defined cell types in behaving animals, and recent developments, including multipoint nanofabricated light sources, provide spatiotemporal resolution on a par with that of physiological recordings. Here we review current advances in optogenetic methods for cellular-resolution stimulation and intervention, as well as their integration with real-time neural recordings for closed-loop experimentation. We discuss how these approaches open the door to new kinds of experiments aimed at dissecting the role of specific neural patterns and discrete cellular populations in orchestrating the activity of brain circuits that support behavior and cognition.
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Affiliation(s)
| | - Azahara Oliva
- Department of Neurobiology and Behavior, Cornell University, Ithaca, NY 14853, USA
| | - Hongyu Chang
- Department of Neurobiology and Behavior, Cornell University, Ithaca, NY 14853, USA
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29
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Pochechuev MS, Fedotov IV, Martynov GN, Solotenkov MA, Ivashkina OI, Rogozhnikova OS, Fedotov AB, Anokhin KV, Zheltikov AM. Implantable graded-index fibers for neural-dynamics-resolving brain imaging in awake mice on an air-lifted platform. JOURNAL OF BIOPHOTONICS 2022; 15:e202200025. [PMID: 35666011 DOI: 10.1002/jbio.202200025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2022] [Revised: 05/13/2022] [Accepted: 05/14/2022] [Indexed: 06/15/2023]
Abstract
We demonstrate a versatile framework for cellular brain imaging in awake mice based on suitably tailored segments of graded-index (GRIN) fiber. Closed-form solutions to ray-path equations for graded-index waveguides are shown to offer important insights into image-transmission properties of GRIN fibers, suggesting useful recipes for optimized GRIN-fiber-based deep-brain imaging. We show that the lengths of GRIN imaging components intended for deep-brain studies in freely moving rodents need to be chosen as a tradeoff among the spatial resolution, the targeted imaging depth and the degree of fiber-probe invasiveness. In the experimental setting that we present in this paper, the head of an awake mouse with a GRIN-fiber implant is fixed under a microscope objective, but the mouse is free to move around an in-house-built flat-floored air-lifted platform, exploring a predesigned environment, configured as an arena for one of standard cognitive tests. We show that cellular-resolution deep-brain imaging can be integrated in this setting with robust cell-specific optical neural recording to enable in vivo studies with minimal physical restraints on animal models. The enhancement of the information capacity of the fluorescence signal, achieved via a suitable filtering of the GRIN-fiber readout, is shown to open routes toward practical imaging modalities whereby the deep-brain neuronal dynamics and axonal connections underpinning the integrative functions of essential brain structures can be studied in awake rodent models.
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Affiliation(s)
| | - Ilya V Fedotov
- Physics Department, M.V. Lomonosov Moscow State University, Moscow, Russia
- Department of Physics and Astronomy, IQSE, Texas A&M University, College Station, Texas, USA
- Russian Quantum Center, Skolkovo, Moscow, Russia
| | | | - Maxim A Solotenkov
- Physics Department, M.V. Lomonosov Moscow State University, Moscow, Russia
| | - Olga I Ivashkina
- Institute for Advanced Brain Studies, M.V. Lomonosov Moscow State University, Moscow, Russia
- National Research Center "Kurchatov Institute", Moscow, Russia
- P.K. Anokhin Research Institute of Normal Physiology, Moscow, Russia
| | - Olga S Rogozhnikova
- Institute for Advanced Brain Studies, M.V. Lomonosov Moscow State University, Moscow, Russia
| | - Andrei B Fedotov
- Physics Department, M.V. Lomonosov Moscow State University, Moscow, Russia
- Russian Quantum Center, Skolkovo, Moscow, Russia
- National University of Science and Technology "MISiS,", Moscow, Russia
| | - Konstantin V Anokhin
- Institute for Advanced Brain Studies, M.V. Lomonosov Moscow State University, Moscow, Russia
- P.K. Anokhin Research Institute of Normal Physiology, Moscow, Russia
| | - Aleksei M Zheltikov
- Department of Physics and Astronomy, IQSE, Texas A&M University, College Station, Texas, USA
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30
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A one-photon endoscope for simultaneous patterned optogenetic stimulation and calcium imaging in freely behaving mice. Nat Biomed Eng 2022; 7:499-510. [PMID: 35970930 DOI: 10.1038/s41551-022-00920-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2021] [Accepted: 07/04/2022] [Indexed: 11/08/2022]
Abstract
Optogenetics and calcium imaging can be combined to simultaneously stimulate and record neural activity in vivo. However, this usually requires two-photon microscopes, which are not portable nor affordable. Here we report the design and implementation of a miniaturized one-photon endoscope for performing simultaneous optogenetic stimulation and calcium imaging. By integrating digital micromirrors, the endoscope makes it possible to activate any neuron of choice within the field of view, and to apply arbitrary spatiotemporal patterns of photostimulation while imaging calcium activity. We used the endoscope to image striatal neurons from either the direct pathway or the indirect pathway in freely moving mice while activating any chosen neuron in the field of view. The endoscope also allows for the selection of neurons based on their relationship with specific animal behaviour, and to recreate the behaviour by mimicking the natural neural activity with photostimulation. The miniaturized endoscope may facilitate the study of how neural activity gives rise to behaviour in freely moving animals.
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31
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Cruz BF, Guiomar G, Soares S, Motiwala A, Machens CK, Paton JJ. Action suppression reveals opponent parallel control via striatal circuits. Nature 2022; 607:521-526. [PMID: 35794480 DOI: 10.1038/s41586-022-04894-9] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2019] [Accepted: 05/23/2022] [Indexed: 01/24/2023]
Abstract
The direct and indirect pathways of the basal ganglia are classically thought to promote and suppress action, respectively1. However, the observed co-activation of striatal direct and indirect medium spiny neurons2 (dMSNs and iMSNs, respectively) has challenged this view. Here we study these circuits in mice performing an interval categorization task that requires a series of self-initiated and cued actions and, critically, a sustained period of dynamic action suppression. Although movement produced the co-activation of iMSNs and dMSNs in the sensorimotor, dorsolateral striatum (DLS), fibre photometry and photo-identified electrophysiological recordings revealed signatures of functional opponency between the two pathways during action suppression. Notably, optogenetic inhibition showed that DLS circuits were largely engaged to suppress-and not promote-action. Specifically, iMSNs on a given hemisphere were dynamically engaged to suppress tempting contralateral action. To understand how such regionally specific circuit function arose, we constructed a computational reinforcement learning model that reproduced key features of behaviour, neural activity and optogenetic inhibition. The model predicted that parallel striatal circuits outside the DLS learned the action-promoting functions, generating the temptation to act. Consistent with this, optogenetic inhibition experiments revealed that dMSNs in the associative, dorsomedial striatum, in contrast to those in the DLS, promote contralateral actions. These data highlight how opponent interactions between multiple circuit- and region-specific basal ganglia processes can lead to behavioural control, and establish a critical role for the sensorimotor indirect pathway in the proactive suppression of tempting actions.
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Affiliation(s)
- Bruno F Cruz
- Champalimaud Neuroscience Programme, Champalimaud Research, Champalimaud Foundation, Lisbon, PT, Portugal
| | - Gonçalo Guiomar
- Champalimaud Neuroscience Programme, Champalimaud Research, Champalimaud Foundation, Lisbon, PT, Portugal
| | - Sofia Soares
- Champalimaud Neuroscience Programme, Champalimaud Research, Champalimaud Foundation, Lisbon, PT, Portugal.,Department of Neurobiology, Harvard Medical School, Boston, MA, USA
| | - Asma Motiwala
- Champalimaud Neuroscience Programme, Champalimaud Research, Champalimaud Foundation, Lisbon, PT, Portugal.,Electrical and Computer Engineering, Carnegie Mellon University, Pittsburgh, PA, USA
| | - Christian K Machens
- Champalimaud Neuroscience Programme, Champalimaud Research, Champalimaud Foundation, Lisbon, PT, Portugal
| | - Joseph J Paton
- Champalimaud Neuroscience Programme, Champalimaud Research, Champalimaud Foundation, Lisbon, PT, Portugal.
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Lindenbach D, Vacca G, Ahn S, Seamans JK, Phillips AG. Optogenetic modulation of glutamatergic afferents from the ventral subiculum to the nucleus accumbens: Effects on dopamine function, response vigor and locomotor activity. Behav Brain Res 2022; 434:114028. [DOI: 10.1016/j.bbr.2022.114028] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2022] [Revised: 07/13/2022] [Accepted: 07/25/2022] [Indexed: 01/06/2023]
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Spagnolo B, Balena A, Peixoto RT, Pisanello M, Sileo L, Bianco M, Rizzo A, Pisano F, Qualtieri A, Lofrumento DD, De Nuccio F, Assad JA, Sabatini BL, De Vittorio M, Pisanello F. Tapered fibertrodes for optoelectrical neural interfacing in small brain volumes with reduced artefacts. NATURE MATERIALS 2022; 21:826-835. [PMID: 35668147 PMCID: PMC7612923 DOI: 10.1038/s41563-022-01272-8] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2020] [Accepted: 04/27/2022] [Indexed: 06/02/2023]
Abstract
Deciphering the neural patterns underlying brain functions is essential to understanding how neurons are organized into networks. This deciphering has been greatly facilitated by optogenetics and its combination with optoelectronic devices to control neural activity with millisecond temporal resolution and cell type specificity. However, targeting small brain volumes causes photoelectric artefacts, in particular when light emission and recording sites are close to each other. We take advantage of the photonic properties of tapered fibres to develop integrated 'fibertrodes' able to optically activate small brain volumes with abated photoelectric noise. Electrodes are positioned very close to light emitting points by non-planar microfabrication, with angled light emission allowing the simultaneous optogenetic manipulation and electrical read-out of one to three neurons, with no photoelectric artefacts, in vivo. The unconventional implementation of two-photon polymerization on the curved taper edge enables the fabrication of recoding sites all around the implant, making fibertrodes a promising complement to planar microimplants.
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Affiliation(s)
| | | | - Rui T Peixoto
- Howard Hughes Medical Institute, Department of Neurobiology, Harvard Medical School, Boston, MA, USA
- Department of Psychiatry, University of Pittsburgh, Pittsburgh, PA, USA
| | | | | | - Marco Bianco
- Istituto Italiano di Tecnologia, CBN, Lecce, Italy
- Dipartimento di Ingegneria dell'Innovazione, Università del Salento, Lecce, Italy
| | - Alessandro Rizzo
- Istituto Italiano di Tecnologia, CBN, Lecce, Italy
- Dipartimento di Ingegneria dell'Innovazione, Università del Salento, Lecce, Italy
| | | | | | - Dario Domenico Lofrumento
- DiSTeBA - Department of Biological and Environmental Sciences and Technologies, Università del Salento, Lecce, Italy
| | - Francesco De Nuccio
- DiSTeBA - Department of Biological and Environmental Sciences and Technologies, Università del Salento, Lecce, Italy
| | - John A Assad
- Howard Hughes Medical Institute, Department of Neurobiology, Harvard Medical School, Boston, MA, USA
- Istituto Italiano di Tecnologia, Genova, Italy
| | - Bernardo L Sabatini
- Howard Hughes Medical Institute, Department of Neurobiology, Harvard Medical School, Boston, MA, USA
| | - Massimo De Vittorio
- Istituto Italiano di Tecnologia, CBN, Lecce, Italy.
- Dipartimento di Ingegneria dell'Innovazione, Università del Salento, Lecce, Italy.
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Hee Lee J, Lee S, Kim D, Jae Lee K. Implantable Micro-Light-Emitting Diode (µLED)-based optogenetic interfaces toward human applications. Adv Drug Deliv Rev 2022; 187:114399. [PMID: 35716898 DOI: 10.1016/j.addr.2022.114399] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2022] [Revised: 05/29/2022] [Accepted: 06/10/2022] [Indexed: 11/25/2022]
Abstract
Optogenetics has received wide attention in biomedical fields because of itsadvantages in temporal precision and spatial resolution. Beyond contributions to important advances in fundamental research, optogenetics is inspiring a shift towards new methods of improving human well-being and treating diseases. Soft, flexible and biocompatible systems using µLEDs as a light source have been introduced to realize brain-compatible optogenetic implants, but there are still many technical challenges to overcome before their human applications. In this review, we address progress in the development of implantable µLED probes and recent achievements in (i) device engineering design, (ii) driving power, (iii) multifunctionality and (iv) closed-loop systems. (v) Expanded optogenetic applications based on remarkable advances in µLED implants will also be discussed.
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Affiliation(s)
- Jae Hee Lee
- Department of Materials Science and Engineering, Korea Advanced Institute of Science and Technology (KAIST), 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea
| | - Sinjeong Lee
- Department of Biological Sciences, Korea Advanced Institute of Science and Technology (KAIST), 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea
| | - Daesoo Kim
- Department of Biological Sciences, Korea Advanced Institute of Science and Technology (KAIST), 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea.
| | - Keon Jae Lee
- Department of Materials Science and Engineering, Korea Advanced Institute of Science and Technology (KAIST), 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea.
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Frank JA. Optofluidic neural interfaces for in vivo photopharmacology. Curr Opin Pharmacol 2022; 63:102195. [DOI: 10.1016/j.coph.2022.102195] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Revised: 01/25/2022] [Accepted: 01/30/2022] [Indexed: 11/03/2022]
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Kim H, Kim MJ, Kwon YW, Jeon S, Lee S, Kim C, Choi BT, Shin Y, Hong SW, Shin HK. Benefits of a Skull-Interfaced Flexible and Implantable Multilight Emitting Diode Array for Photobiomodulation in Ischemic Stroke. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2022; 9:e2104629. [PMID: 35076161 PMCID: PMC9008794 DOI: 10.1002/advs.202104629] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2021] [Revised: 01/08/2022] [Indexed: 05/05/2023]
Abstract
Photobiomodulation (PBM) has received attention due to its potential for improving tissue function and enhancing regeneration in stroke. A lightweight, compact, and simple system of miniaturized electronic devices consisting of packaged light-emitting diodes (LEDs) that incorporates a flexible substrate for in vivo brain PBM in a mouse model is developed. Using this device platform, the preventive and therapeutic effects of PBM affixed to the exposed skull of mice in the photothrombosis and middle cerebral artery occlusion stroke model are evaluated. Among the wavelength range of 630, 850, and 940 nm LED array, the PBM with 630-nm LED array is proved to be the most effective for reducing the infarction volume and neurological impairment after ischemic stroke. Moreover, the PBM with 630 nm LED array remarkably improves the capability of spatial learning and memory in the chronic poststroke phase, attenuates AIM2 inflammasome activation and inflammasome-mediated pyroptosis, and modulates microglial polarization in the hippocampus and cortex 7 days following ischemic stroke. Thus, PBM may prevent tissue and functional damage in acute ischemic injury, thereby attenuating the development of cognitive impairment after stroke.
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Affiliation(s)
- Hyunha Kim
- Department of Korean Medical ScienceGraduate Training Program of Korean Medical Therapeutics for Healthy‐AgingSchool of Korean MedicinePusan National UniversityYangsan50612Republic of Korea
- Department of Pharmacology and NeuroscienceCreighton University School of MedicineOmahaNE68178USA
| | - Min Jae Kim
- Department of Korean Medical ScienceGraduate Training Program of Korean Medical Therapeutics for Healthy‐AgingSchool of Korean MedicinePusan National UniversityYangsan50612Republic of Korea
| | - Young Woo Kwon
- Department of Nano‐Fusion TechnologyCollege of Nanoscience & NanotechnologyPusan National UniversityBusan46241Republic of Korea
| | - Sangheon Jeon
- Department of Congo‐Mechatronics EngineeringDepartment of Optics and Mechatronics EngineeringCollege of Nanoscience & NanotechnologyPusan National UniversityBusan46241Republic of Korea
| | - Seo‐Yeon Lee
- Department of PharmacologyWonkwang University School of MedicineIksan54538Republic of Korea
| | - Chang‐Seok Kim
- Department of Congo‐Mechatronics EngineeringDepartment of Optics and Mechatronics EngineeringCollege of Nanoscience & NanotechnologyPusan National UniversityBusan46241Republic of Korea
| | - Byung Tae Choi
- Department of Korean Medical ScienceGraduate Training Program of Korean Medical Therapeutics for Healthy‐AgingSchool of Korean MedicinePusan National UniversityYangsan50612Republic of Korea
| | - Yong‐Il Shin
- Department of Rehabilitation MedicineSchool of MedicinePusan National UniversityYangsan50612Republic of Korea
| | - Suck Won Hong
- Department of Congo‐Mechatronics EngineeringDepartment of Optics and Mechatronics EngineeringCollege of Nanoscience & NanotechnologyPusan National UniversityBusan46241Republic of Korea
| | - Hwa Kyoung Shin
- Department of Korean Medical ScienceGraduate Training Program of Korean Medical Therapeutics for Healthy‐AgingSchool of Korean MedicinePusan National UniversityYangsan50612Republic of Korea
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Liu Z, Zhang Z, Liu Y, Mei Y, Feng E, Liu Y, Zheng T, Chen J, Zhang S, Tian Y. Raman Fiber Photometry for Understanding Mitochondrial Superoxide Burst and Extracellular Calcium Ion Influx upon Acute Hypoxia in the Brain of Freely Moving Animals. Angew Chem Int Ed Engl 2022; 61:e202111630. [PMID: 35224847 DOI: 10.1002/anie.202111630] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2021] [Indexed: 11/06/2022]
Abstract
Developing a novel tool capable of real-time monitoring and simultaneous quantitation of multiple molecules in mitochondria across the whole brain of freely moving animals is the key bottleneck for understanding the physiological and pathological roles that mitochondria play in the brain events. Here we built a Raman fiber photometry, and created a highly selective non-metallic Raman probe based on the triple-recognition strategies of chemical reaction, charge transfer, and characteristic fingerprint peaks, for tracking and simultaneous quantitation of mitochondrial O2 .- , Ca2+ and pH at the same location in six brain regions of free-moving animal upon hypoxia. It was found that mitochondrial O2 .- , Ca2+ and pH changed from superficial to deep brain regions upon hypoxia. It was discovered that hypoxia-induced mitochondrial O2 .- burst was regulated by ASIC1a, leading to mitochondrial Ca2+ overload and acidification. Furthermore, we found the overload of mitochondrial Ca2+ was mostly attributed to the influx of extracellular Ca2+ .
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Affiliation(s)
- Zhichao Liu
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, School of Chemistry and Molecular Engineering, East China Normal University, Dongchuan Road 500, Shanghai, 200241, China
| | - Zhonghui Zhang
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Dongchuan Road 500, Shanghai, 200241, China
| | - Yuandong Liu
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, School of Chemistry and Molecular Engineering, East China Normal University, Dongchuan Road 500, Shanghai, 200241, China
| | - Yuxiao Mei
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, School of Chemistry and Molecular Engineering, East China Normal University, Dongchuan Road 500, Shanghai, 200241, China
| | - Enduo Feng
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, School of Chemistry and Molecular Engineering, East China Normal University, Dongchuan Road 500, Shanghai, 200241, China
| | - Yangyi Liu
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Dongchuan Road 500, Shanghai, 200241, China
| | - Tingting Zheng
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, School of Chemistry and Molecular Engineering, East China Normal University, Dongchuan Road 500, Shanghai, 200241, China
| | - Jinquan Chen
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Dongchuan Road 500, Shanghai, 200241, China
| | - Sanjun Zhang
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Dongchuan Road 500, Shanghai, 200241, China
| | - Yang Tian
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, School of Chemistry and Molecular Engineering, East China Normal University, Dongchuan Road 500, Shanghai, 200241, China.,State Key Laboratory of Precision Spectroscopy, East China Normal University, Dongchuan Road 500, Shanghai, 200241, China
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Multichannel optogenetics combined with laminar recordings for ultra-controlled neuronal interrogation. Nat Commun 2022; 13:985. [PMID: 35190556 PMCID: PMC8861070 DOI: 10.1038/s41467-022-28629-6] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2021] [Accepted: 02/02/2022] [Indexed: 11/18/2022] Open
Abstract
Simultaneous large-scale recordings and optogenetic interventions may hold the key to deciphering the fast-paced and multifaceted dialogue between neurons that sustains brain function. Here we have taken advantage of thin, cell-sized, optical fibers for minimally invasive optogenetics and flexible implantations. We describe a simple procedure for making those fibers side-emitting with a Lambertian emission distribution. Here we combined those fibers with silicon probes to achieve high-quality recordings and ultrafast multichannel optogenetic inhibition. Furthermore, we developed a multi-channel optical commutator and general-purpose patch-cord for flexible experiments. We demonstrate that our framework allows to conduct simultaneous laminar recordings and multifiber stimulations, 3D optogenetic stimulation, connectivity inference, and behavioral quantification in freely moving animals. Our framework paves the way for large-scale photo tagging and controlled interrogation of rapid neuronal communication in any combination of brain areas. Researchers from Freiburg University developed an ultraflexible fiber-based 3D light delivery system for electrophysiology and optogenetic manipulation in freely moving animals. The system allows multiside modulation of neuronal activity combined with neuronal measurements.
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Sui K, Meneghetti M, Kaur J, Sørensen JF, Berg RW, Markos C. Adaptive polymer fiber neural device for drug delivery and enlarged illumination angle for neuromodulation. J Neural Eng 2022; 19. [PMID: 35130533 DOI: 10.1088/1741-2552/ac5267] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Accepted: 02/07/2022] [Indexed: 11/11/2022]
Abstract
OBJECTIVE Optical fiber devices constitute significant tools for the modulation and interrogation of neuronal circuitry in the mid and deep brain regions. The illuminated brain area during neuromodulation has a direct impact on the spatio-temporal properties of the brain activity and depends solely on the material and geometrical characteristics of the optical fibers. In the present work, we developed two different flexible polymer optical fibers (POFs) with integrated microfluidic channels (MFCs) and an ultra-high numerical aperture (UHNA) for enlarging the illumination angle to achieve efficient neuromodulation. APPROACH Three distinct thermoplastic polymers: polysulfone (PSU), polycarbonate (PC), and fluorinated ethylene propylene (FEP) were used to fabricate two step-index UHNA POF neural devices using a scalable thermal drawing process. The POFs were characterized in terms of their illumination map as well as their fluid delivery capability in phantom and adult rat brain slices. MAIN RESULTS A 100-fold reduced bending stiffness of the proposed fiber devices compared to their commercially available counterparts has been found. The integrated MFCs can controllably deliver dye (trypan blue) on-demand over a wide range of injection rates spanning from 10 nL/min to 1000 nL/min. Compared with commercial silica fibers, the proposed UHNA POFs exhibited an increased illumination area by 17% and 21% under 470 and 650 nm wavelength, respectively. In addition, a fluorescent light recording experiment has been conducted to demonstrate the ability of our UHNA POFs to be used as optical waveguides in fiber photometry. SIGNIFICANCE Our results overcome the current technological limitations of fiber implants that have limited illumination area and we suggest that soft neural fiber devices can be developed using different custom designs for illumination, collection, and photometry applications. We anticipate our work to pave the way towards the development of next-generation functional optical fibers for neuroscience.
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Affiliation(s)
- Kunyang Sui
- DTU Fotonik, DTU - Lyngby Campus, Ørsteds Plads, 343, Lyngby, 2800, DENMARK
| | - Marcello Meneghetti
- DTU Fotonik, DTU - Lyngby Campus, Ørsteds Plads, 343,, Lyngby, 2800, DENMARK
| | - Jaspreet Kaur
- Department of Neuroscience, University of Copenhagen Faculty of Health and Medical Sciences, Building: 62, Copenhagen, 2200, DENMARK
| | - Jakob Fleng Sørensen
- Department of Neuroscience, University of Copenhagen Faculty of Health and Medical Sciences, Building: 62, Copenhagen, 2200, DENMARK
| | - Rune W Berg
- Department of Neuroscience, University of Copenhagen Faculty of Health and Medical Sciences, Building: 62, Copenhagen, 2200, DENMARK
| | - Christos Markos
- DTU Fotonik, Technical University of Denmark, DTU Fotonik, Ørsteds Plads Building 343, room 022, Kgs.Lyngby, Lyngby, 2800, DENMARK
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Bianco M, Pisanello M, Balena A, Montinaro C, Pisano F, Spagnolo B, Sabatini BL, De Vittorio M, Pisanello F. Orthogonalization of far-field detection in tapered optical fibers for depth-selective fiber photometry in brain tissue. APL PHOTONICS 2022; 7:026106. [PMID: 35224188 PMCID: PMC8865573 DOI: 10.1063/5.0073594] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/01/2021] [Accepted: 01/20/2022] [Indexed: 06/14/2023]
Abstract
The field of implantable optical neural interfaces has recently enabled the interrogation of neural circuitry with both cell-type specificity and spatial resolution in sub-cortical structures of the mouse brain. This generated the need to integrate multiple optical channels within the same implantable device, motivating the requirement of multiplexing and demultiplexing techniques. In this article, we present an orthogonalization method of the far-field space to introduce mode-division demultiplexing for collecting fluorescence from the implantable tapered optical fibers. This is achieved by exploiting the correlation between the transversal wavevector k t of the guided light and the position of the fluorescent sources along the implant, an intrinsic property of the taper waveguide. On these bases, we define a basis of orthogonal vectors in the Fourier space, each of which is associated with a depth along the taper, to simultaneously detect and demultiplex the collected signal when the probe is implanted in fixed mouse brain tissue. Our approach complements the existing multiplexing techniques used in silicon-based photonics probes with the advantage of a significant simplification of the probe itself.
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Affiliation(s)
- Marco Bianco
- Author to whom correspondence should be addressed:
| | - Marco Pisanello
- Istituto Italiano di Tecnologia (IIT), Center for Biomolecular Nanotechnologies, Via Barsanti 14, Arnesano, 73010 Lecce, Italy
| | - Antonio Balena
- Istituto Italiano di Tecnologia (IIT), Center for Biomolecular Nanotechnologies, Via Barsanti 14, Arnesano, 73010 Lecce, Italy
| | | | - Filippo Pisano
- Istituto Italiano di Tecnologia (IIT), Center for Biomolecular Nanotechnologies, Via Barsanti 14, Arnesano, 73010 Lecce, Italy
| | - Barbara Spagnolo
- Istituto Italiano di Tecnologia (IIT), Center for Biomolecular Nanotechnologies, Via Barsanti 14, Arnesano, 73010 Lecce, Italy
| | - Bernardo L. Sabatini
- Dipartimento di Scienze e Tecnologie Biologiche e Ambientali, Università del Salento, Via per Monteroni, 73100 Lecce, Italy
| | | | - Ferruccio Pisanello
- Istituto Italiano di Tecnologia (IIT), Center for Biomolecular Nanotechnologies, Via Barsanti 14, Arnesano, 73010 Lecce, Italy
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Nazempour R, Zhang B, Ye Z, Yin L, Lv X, Sheng X. Emerging Applications of Optical Fiber-Based Devices for Brain Research. ADVANCED FIBER MATERIALS 2022; 4:24-42. [DOI: 10.1007/s42765-021-00092-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2021] [Accepted: 07/01/2021] [Indexed: 02/07/2023]
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42
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Liu Z, Zhang Z, Liu Y, Mei Y, Feng E, Liu Y, Zheng T, Chen J, Zhang S, Tian Y. Raman Fiber Photometry for Understanding Mitochondrial Superoxide Burst and Extracellular Calcium Ion Influx upon Acute Hypoxia in the Brain of Freely Moving Animals. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202111630] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Zhichao Liu
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes School of Chemistry and Molecular Engineering East China Normal University Dongchuan Road 500 Shanghai 200241 China
| | - Zhonghui Zhang
- State Key Laboratory of Precision Spectroscopy East China Normal University Dongchuan Road 500 Shanghai 200241 China
| | - Yuandong Liu
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes School of Chemistry and Molecular Engineering East China Normal University Dongchuan Road 500 Shanghai 200241 China
| | - Yuxiao Mei
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes School of Chemistry and Molecular Engineering East China Normal University Dongchuan Road 500 Shanghai 200241 China
| | - Enduo Feng
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes School of Chemistry and Molecular Engineering East China Normal University Dongchuan Road 500 Shanghai 200241 China
| | - Yangyi Liu
- State Key Laboratory of Precision Spectroscopy East China Normal University Dongchuan Road 500 Shanghai 200241 China
| | - Tingting Zheng
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes School of Chemistry and Molecular Engineering East China Normal University Dongchuan Road 500 Shanghai 200241 China
| | - Jinquan Chen
- State Key Laboratory of Precision Spectroscopy East China Normal University Dongchuan Road 500 Shanghai 200241 China
| | - Sanjun Zhang
- State Key Laboratory of Precision Spectroscopy East China Normal University Dongchuan Road 500 Shanghai 200241 China
| | - Yang Tian
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes School of Chemistry and Molecular Engineering East China Normal University Dongchuan Road 500 Shanghai 200241 China
- State Key Laboratory of Precision Spectroscopy East China Normal University Dongchuan Road 500 Shanghai 200241 China
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Abstract
To understand how brain functions arise from interconnected neural networks, it is necessary to develop tools that can allow simultaneous manipulation and recording of neural activities. Multimodal neural probes, especially those that combine optogenetics with electrophysiology, provide a powerful tool for the dissection of neural circuit functions and understanding of brain diseases. In this review, we provide an overview of recent developments in multimodal neural probes. We will focus on materials and integration strategies of multimodal neural probes to achieve combined optogenetic stimulation and electrical recordings with high spatiotemporal precision and low invasiveness. In addition, we will also discuss future opportunities of multimodal neural interfaces in basic and translational neuroscience.
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Affiliation(s)
- Huihui Tian
- CAS Center for Excellence in Nanoscience, National Center for Nanoscience and Technology, Beijing 100190, China
| | - Ke Xu
- CAS Center for Excellence in Nanoscience, National Center for Nanoscience and Technology, Beijing 100190, China
- CAS Center for Excellence in Brain Science and Intelligence Technology, Institute of Neuroscience, Chinese Academy of Sciences, Shanghai 200031, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Liang Zou
- CAS Center for Excellence in Nanoscience, National Center for Nanoscience and Technology, Beijing 100190, China
- CAS Center for Excellence in Brain Science and Intelligence Technology, Institute of Neuroscience, Chinese Academy of Sciences, Shanghai 200031, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Ying Fang
- CAS Center for Excellence in Nanoscience, National Center for Nanoscience and Technology, Beijing 100190, China
- CAS Center for Excellence in Brain Science and Intelligence Technology, Institute of Neuroscience, Chinese Academy of Sciences, Shanghai 200031, China
- University of Chinese Academy of Sciences, Beijing 100049, China
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Jiang S, Wu X, Rommelfanger NJ, Ou Z, Hong G. Shedding light on neurons: optical approaches for neuromodulation. Natl Sci Rev 2022; 9:nwac007. [PMID: 36196122 PMCID: PMC9522429 DOI: 10.1093/nsr/nwac007] [Citation(s) in RCA: 30] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2021] [Revised: 10/17/2021] [Accepted: 12/29/2021] [Indexed: 11/14/2022] Open
Abstract
Today's optical neuromodulation techniques are rapidly evolving, benefiting from advances in photonics, genetics and materials science. In this review, we provide an up-to-date overview of the latest optical approaches for neuromodulation. We begin with the physical principles and constraints underlying the interaction between light and neural tissue. We then present advances in optical neurotechnologies in seven modules: conventional optical fibers, multifunctional fibers, optical waveguides, light-emitting diodes, upconversion nanoparticles, optical neuromodulation based on the secondary effects of light, and unconventional light sources facilitated by ultrasound and magnetic fields. We conclude our review with an outlook on new methods and mechanisms that afford optical neuromodulation with minimal invasiveness and footprint.
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Affiliation(s)
- Shan Jiang
- Department of Materials Science and Engineering, Stanford University, Stanford, CA, 94305, USA
- Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, 94305, USA
| | - Xiang Wu
- Department of Materials Science and Engineering, Stanford University, Stanford, CA, 94305, USA
- Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, 94305, USA
| | - Nicholas J Rommelfanger
- Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, 94305, USA
- Department of Applied Physics, Stanford University, Stanford, CA, 94305, USA
| | - Zihao Ou
- Department of Materials Science and Engineering, Stanford University, Stanford, CA, 94305, USA
- Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, 94305, USA
| | - Guosong Hong
- Department of Materials Science and Engineering, Stanford University, Stanford, CA, 94305, USA
- Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, 94305, USA
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Mach-Batlle R, Pisanello M, Pisano F, De Vittorio M, Pisanello F, Ciracì C. Numerical Calculation of the Light Propagation in Tapered Optical Fibers for Optical Neural Interfaces. JOURNAL OF LIGHTWAVE TECHNOLOGY : A JOINT IEEE/OSA PUBLICATION 2022; 40:196-205. [PMID: 35221462 PMCID: PMC8880829 DOI: 10.1109/jlt.2021.3118898] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
As implantable optical systems recently enabled new approaches to study the brain with optical radiations, tapered optical fibers emerged as promising implantable waveguides to deliver and collect light from sub-cortical structures of the mouse brain. They rely on a specific feature of multimodal fiber optics: as the waveguide narrows, the number of guided modes decreases and the radiation can gradually couple with the environment. This happens along a taper segment whose length can be tailored to match with the depth of functional structures of the mouse brain, and can extend for a few millimeters. This anatomical requirement results in optical systems which have an active area that is very long compared to the wavelength of the light they guide and their behavior is typically estimated by ray tracing simulations, because finite element methods are too computationally demanding. Here we present a computational technique that exploits the beam-envelope method and the cylindrical symmetry of the fibers to provide an efficient and exact calculation of the electric field along the fibers, which may enable the design of neural interfaces optimized to meet different goals.
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Affiliation(s)
- Rosa Mach-Batlle
- Center for Biomolecular Nanotechnologies, Istituto Italiano di Tecnologia, 73010 Arnesano, Italy
| | - Marco Pisanello
- Center for Biomolecular Nanotechnologies, Istituto Italiano di Tecnologia, 73010 Arnesano, Italy
| | - Filippo Pisano
- Center for Biomolecular Nanotechnologies, Istituto Italiano di Tecnologia, 73010 Arnesano, Italy
| | - Massimo De Vittorio
- Center for Biomolecular Nanotechnologies, Istituto Italiano di Tecnologia, 73010 Arnesano, Italy, and also with the Dipartimento di Ingegneria dell'Innovazione, Università del Salento, 73100 Lecce, Italy
| | - Ferruccio Pisanello
- Center for Biomolecular Nanotechnologies, Istituto Italiano di Tecnologia, 73010 Arnesano, Italy
| | - Cristian Ciracì
- Center for Biomolecular Nanotechnologies, Istituto Italiano di Tecnologia, 73010 Arnesano, Italy
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Abdelfattah AS, Ahuja S, Akkin T, Allu SR, Brake J, Boas DA, Buckley EM, Campbell RE, Chen AI, Cheng X, Čižmár T, Costantini I, De Vittorio M, Devor A, Doran PR, El Khatib M, Emiliani V, Fomin-Thunemann N, Fainman Y, Fernandez-Alfonso T, Ferri CGL, Gilad A, Han X, Harris A, Hillman EMC, Hochgeschwender U, Holt MG, Ji N, Kılıç K, Lake EMR, Li L, Li T, Mächler P, Miller EW, Mesquita RC, Nadella KMNS, Nägerl UV, Nasu Y, Nimmerjahn A, Ondráčková P, Pavone FS, Perez Campos C, Peterka DS, Pisano F, Pisanello F, Puppo F, Sabatini BL, Sadegh S, Sakadzic S, Shoham S, Shroff SN, Silver RA, Sims RR, Smith SL, Srinivasan VJ, Thunemann M, Tian L, Tian L, Troxler T, Valera A, Vaziri A, Vinogradov SA, Vitale F, Wang LV, Uhlířová H, Xu C, Yang C, Yang MH, Yellen G, Yizhar O, Zhao Y. Neurophotonic tools for microscopic measurements and manipulation: status report. NEUROPHOTONICS 2022; 9:013001. [PMID: 35493335 PMCID: PMC9047450 DOI: 10.1117/1.nph.9.s1.013001] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
Neurophotonics was launched in 2014 coinciding with the launch of the BRAIN Initiative focused on development of technologies for advancement of neuroscience. For the last seven years, Neurophotonics' agenda has been well aligned with this focus on neurotechnologies featuring new optical methods and tools applicable to brain studies. While the BRAIN Initiative 2.0 is pivoting towards applications of these novel tools in the quest to understand the brain, this status report reviews an extensive and diverse toolkit of novel methods to explore brain function that have emerged from the BRAIN Initiative and related large-scale efforts for measurement and manipulation of brain structure and function. Here, we focus on neurophotonic tools mostly applicable to animal studies. A companion report, scheduled to appear later this year, will cover diffuse optical imaging methods applicable to noninvasive human studies. For each domain, we outline the current state-of-the-art of the respective technologies, identify the areas where innovation is needed, and provide an outlook for the future directions.
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Affiliation(s)
- Ahmed S. Abdelfattah
- Brown University, Department of Neuroscience, Providence, Rhode Island, United States
| | - Sapna Ahuja
- University of Pennsylvania, Perelman School of Medicine, Department of Biochemistry and Biophysics, Philadelphia, Pennsylvania, United States
- University of Pennsylvania, School of Arts and Sciences, Department of Chemistry, Philadelphia, Pennsylvania, United States
| | - Taner Akkin
- University of Minnesota, Department of Biomedical Engineering, Minneapolis, Minnesota, United States
| | - Srinivasa Rao Allu
- University of Pennsylvania, Perelman School of Medicine, Department of Biochemistry and Biophysics, Philadelphia, Pennsylvania, United States
- University of Pennsylvania, School of Arts and Sciences, Department of Chemistry, Philadelphia, Pennsylvania, United States
| | - Joshua Brake
- Harvey Mudd College, Department of Engineering, Claremont, California, United States
| | - David A. Boas
- Boston University, Department of Biomedical Engineering, Boston, Massachusetts, United States
| | - Erin M. Buckley
- Georgia Institute of Technology and Emory University, Wallace H. Coulter Department of Biomedical Engineering, Atlanta, Georgia, United States
- Emory University, Department of Pediatrics, Atlanta, Georgia, United States
| | - Robert E. Campbell
- University of Tokyo, Department of Chemistry, Tokyo, Japan
- University of Alberta, Department of Chemistry, Edmonton, Alberta, Canada
| | - Anderson I. Chen
- Boston University, Department of Biomedical Engineering, Boston, Massachusetts, United States
| | - Xiaojun Cheng
- Boston University, Department of Biomedical Engineering, Boston, Massachusetts, United States
| | - Tomáš Čižmár
- Institute of Scientific Instruments of the Czech Academy of Sciences, Brno, Czech Republic
| | - Irene Costantini
- University of Florence, European Laboratory for Non-Linear Spectroscopy, Department of Biology, Florence, Italy
- National Institute of Optics, National Research Council, Rome, Italy
| | - Massimo De Vittorio
- Istituto Italiano di Tecnologia, Center for Biomolecular Nanotechnologies, Arnesano, Italy
| | - Anna Devor
- Boston University, Department of Biomedical Engineering, Boston, Massachusetts, United States
- Massachusetts General Hospital, Harvard Medical School, Athinoula A. Martinos Center for Biomedical Imaging, Charlestown, Massachusetts, United States
| | - Patrick R. Doran
- Boston University, Department of Biomedical Engineering, Boston, Massachusetts, United States
| | - Mirna El Khatib
- University of Pennsylvania, Perelman School of Medicine, Department of Biochemistry and Biophysics, Philadelphia, Pennsylvania, United States
- University of Pennsylvania, School of Arts and Sciences, Department of Chemistry, Philadelphia, Pennsylvania, United States
| | | | - Natalie Fomin-Thunemann
- Boston University, Department of Biomedical Engineering, Boston, Massachusetts, United States
| | - Yeshaiahu Fainman
- University of California San Diego, Department of Electrical and Computer Engineering, La Jolla, California, United States
| | - Tomas Fernandez-Alfonso
- University College London, Department of Neuroscience, Physiology and Pharmacology, London, United Kingdom
| | - Christopher G. L. Ferri
- University of California San Diego, Departments of Neurosciences, La Jolla, California, United States
| | - Ariel Gilad
- The Hebrew University of Jerusalem, Institute for Medical Research Israel–Canada, Department of Medical Neurobiology, Faculty of Medicine, Jerusalem, Israel
| | - Xue Han
- Boston University, Department of Biomedical Engineering, Boston, Massachusetts, United States
| | - Andrew Harris
- Weizmann Institute of Science, Department of Brain Sciences, Rehovot, Israel
| | | | - Ute Hochgeschwender
- Central Michigan University, Department of Neuroscience, Mount Pleasant, Michigan, United States
| | - Matthew G. Holt
- University of Porto, Instituto de Investigação e Inovação em Saúde (i3S), Porto, Portugal
| | - Na Ji
- University of California Berkeley, Department of Physics, Berkeley, California, United States
| | - Kıvılcım Kılıç
- Boston University, Department of Biomedical Engineering, Boston, Massachusetts, United States
| | - Evelyn M. R. Lake
- Yale School of Medicine, Department of Radiology and Biomedical Imaging, New Haven, Connecticut, United States
| | - Lei Li
- California Institute of Technology, Andrew and Peggy Cherng Department of Medical Engineering, Department of Electrical Engineering, Pasadena, California, United States
| | - Tianqi Li
- University of Minnesota, Department of Biomedical Engineering, Minneapolis, Minnesota, United States
| | - Philipp Mächler
- Boston University, Department of Biomedical Engineering, Boston, Massachusetts, United States
| | - Evan W. Miller
- University of California Berkeley, Departments of Chemistry and Molecular & Cell Biology and Helen Wills Neuroscience Institute, Berkeley, California, United States
| | | | | | - U. Valentin Nägerl
- Interdisciplinary Institute for Neuroscience University of Bordeaux & CNRS, Bordeaux, France
| | - Yusuke Nasu
- University of Tokyo, Department of Chemistry, Tokyo, Japan
| | - Axel Nimmerjahn
- Salk Institute for Biological Studies, Waitt Advanced Biophotonics Center, La Jolla, California, United States
| | - Petra Ondráčková
- Institute of Scientific Instruments of the Czech Academy of Sciences, Brno, Czech Republic
| | - Francesco S. Pavone
- National Institute of Optics, National Research Council, Rome, Italy
- University of Florence, European Laboratory for Non-Linear Spectroscopy, Department of Physics, Florence, Italy
| | - Citlali Perez Campos
- Columbia University, Zuckerman Mind Brain Behavior Institute, New York, United States
| | - Darcy S. Peterka
- Columbia University, Zuckerman Mind Brain Behavior Institute, New York, United States
| | - Filippo Pisano
- Istituto Italiano di Tecnologia, Center for Biomolecular Nanotechnologies, Arnesano, Italy
| | - Ferruccio Pisanello
- Istituto Italiano di Tecnologia, Center for Biomolecular Nanotechnologies, Arnesano, Italy
| | - Francesca Puppo
- University of California San Diego, Departments of Neurosciences, La Jolla, California, United States
| | - Bernardo L. Sabatini
- Harvard Medical School, Howard Hughes Medical Institute, Department of Neurobiology, Boston, Massachusetts, United States
| | - Sanaz Sadegh
- University of California San Diego, Departments of Neurosciences, La Jolla, California, United States
| | - Sava Sakadzic
- Massachusetts General Hospital, Harvard Medical School, Athinoula A. Martinos Center for Biomedical Imaging, Charlestown, Massachusetts, United States
| | - Shy Shoham
- New York University Grossman School of Medicine, Tech4Health and Neuroscience Institutes, New York, New York, United States
| | - Sanaya N. Shroff
- Boston University, Department of Biomedical Engineering, Boston, Massachusetts, United States
| | - R. Angus Silver
- University College London, Department of Neuroscience, Physiology and Pharmacology, London, United Kingdom
| | - Ruth R. Sims
- Sorbonne University, INSERM, CNRS, Institut de la Vision, Paris, France
| | - Spencer L. Smith
- University of California Santa Barbara, Department of Electrical and Computer Engineering, Santa Barbara, California, United States
| | - Vivek J. Srinivasan
- New York University Langone Health, Departments of Ophthalmology and Radiology, New York, New York, United States
| | - Martin Thunemann
- Boston University, Department of Biomedical Engineering, Boston, Massachusetts, United States
| | - Lei Tian
- Boston University, Departments of Electrical Engineering and Biomedical Engineering, Boston, Massachusetts, United States
| | - Lin Tian
- University of California Davis, Department of Biochemistry and Molecular Medicine, Davis, California, United States
| | - Thomas Troxler
- University of Pennsylvania, Perelman School of Medicine, Department of Biochemistry and Biophysics, Philadelphia, Pennsylvania, United States
- University of Pennsylvania, School of Arts and Sciences, Department of Chemistry, Philadelphia, Pennsylvania, United States
| | - Antoine Valera
- University College London, Department of Neuroscience, Physiology and Pharmacology, London, United Kingdom
| | - Alipasha Vaziri
- Rockefeller University, Laboratory of Neurotechnology and Biophysics, New York, New York, United States
- The Rockefeller University, The Kavli Neural Systems Institute, New York, New York, United States
| | - Sergei A. Vinogradov
- University of Pennsylvania, Perelman School of Medicine, Department of Biochemistry and Biophysics, Philadelphia, Pennsylvania, United States
- University of Pennsylvania, School of Arts and Sciences, Department of Chemistry, Philadelphia, Pennsylvania, United States
| | - Flavia Vitale
- Center for Neuroengineering and Therapeutics, Departments of Neurology, Bioengineering, Physical Medicine and Rehabilitation, Philadelphia, Pennsylvania, United States
| | - Lihong V. Wang
- California Institute of Technology, Andrew and Peggy Cherng Department of Medical Engineering, Department of Electrical Engineering, Pasadena, California, United States
| | - Hana Uhlířová
- Institute of Scientific Instruments of the Czech Academy of Sciences, Brno, Czech Republic
| | - Chris Xu
- Cornell University, School of Applied and Engineering Physics, Ithaca, New York, United States
| | - Changhuei Yang
- California Institute of Technology, Departments of Electrical Engineering, Bioengineering and Medical Engineering, Pasadena, California, United States
| | - Mu-Han Yang
- University of California San Diego, Department of Electrical and Computer Engineering, La Jolla, California, United States
| | - Gary Yellen
- Harvard Medical School, Department of Neurobiology, Boston, Massachusetts, United States
| | - Ofer Yizhar
- Weizmann Institute of Science, Department of Brain Sciences, Rehovot, Israel
| | - Yongxin Zhao
- Carnegie Mellon University, Department of Biological Sciences, Pittsburgh, Pennsylvania, United States
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Cheng YP, Huang JJ, Yeh CI, Pei YC. Alternation of Neuronal Feature Selectivity Induced by Paired Optogenetic-Mechanical Stimulation in the Barrel Cortex. Front Neural Circuits 2021; 15:708459. [PMID: 34566582 PMCID: PMC8457523 DOI: 10.3389/fncir.2021.708459] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2021] [Accepted: 08/05/2021] [Indexed: 11/13/2022] Open
Abstract
Paired stimulation has been applied to modulate neuronal functions in the primary somatosensory cortex but its utility in the alternation of tuning function, such as direction tuning for whisker stimuli, remains unclear. In the present study, we attempted to manipulate feature preferences in barrel cortical neurons using repetitive paired whisker deflection combined with optogenetic stimulation and to obtain optimal parameters that can induce neuroplasticity. We found no significant response changes across stimulus parameters, such as onset asynchronies and paired directions. Only when paired stimulation was applied in the nonpreferred direction of the principal whisker of a neuron, were the neuron’s responses enhanced in that direction. Importantly, this effect was only observed when the optogenetic stimulus preceded the mechanical stimulus. Our findings indicate that repetitive paired optogenetic-mechanical stimulation can induce in vivo neuroplasticity of feature selectivity in limited situations.
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Affiliation(s)
- Yu-Po Cheng
- Department of Physical Medicine and Rehabilitation, Linkou Chang Gung Memorial Hospital, Taoyuan, Taiwan.,Department of Psychology, College of Science, National Taiwan University, Taipei, Taiwan
| | - Jian-Jia Huang
- Department of Physical Medicine and Rehabilitation, Linkou Chang Gung Memorial Hospital, Taoyuan, Taiwan.,Center of Vascularized Tissue Allograft, Linkou Chang Gung Memorial Hospital, Taoyuan, Taiwan
| | - Chun-I Yeh
- Department of Psychology, College of Science, National Taiwan University, Taipei, Taiwan
| | - Yu-Cheng Pei
- Department of Physical Medicine and Rehabilitation, Linkou Chang Gung Memorial Hospital, Taoyuan, Taiwan.,Center of Vascularized Tissue Allograft, Linkou Chang Gung Memorial Hospital, Taoyuan, Taiwan.,School of Medicine, College of Medicine, Chang Gung University, Taoyuan, Taiwan.,Healthy Aging Research Center, Chang Gung University, Taoyuan, Taiwan
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Miranda C, Howell MR, Lusk JF, Marschall E, Eshima J, Anderson T, Smith BS. Automated microscope-independent fluorescence-guided micropipette. BIOMEDICAL OPTICS EXPRESS 2021; 12:4689-4699. [PMID: 34513218 PMCID: PMC8407805 DOI: 10.1364/boe.431372] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2021] [Revised: 06/23/2021] [Accepted: 06/24/2021] [Indexed: 06/13/2023]
Abstract
Glass micropipette electrodes are commonly used to provide high resolution recordings of neurons. Although it is the gold standard for single cell recordings, it is highly dependent on the skill of the electrophysiologist. Here, we demonstrate a method of guiding micropipette electrodes to neurons by collecting fluorescence at the aperture, using an intra-electrode tapered optical fiber. The use of a tapered fiber for excitation and collection of fluorescence at the micropipette tip couples the feedback mechanism directly to the distance between the target and electrode. In this study, intra-electrode tapered optical fibers provide a targeted robotic approach to labeled neurons that is independent of microscopy.
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Affiliation(s)
- Christopher Miranda
- Arizona State University, School of Biological and Health Systems Engineering, Tempe, AZ 85210, USA
| | - Madeleine R. Howell
- Arizona State University, School of Biological and Health Systems Engineering, Tempe, AZ 85210, USA
| | - Joel F. Lusk
- Arizona State University, School of Biological and Health Systems Engineering, Tempe, AZ 85210, USA
| | - Ethan Marschall
- Arizona State University, School of Biological and Health Systems Engineering, Tempe, AZ 85210, USA
| | - Jarrett Eshima
- Arizona State University, School of Biological and Health Systems Engineering, Tempe, AZ 85210, USA
| | - Trent Anderson
- University of Arizona, College of Medicine – Phoenix, Phoenix, AZ 85004, USA
| | - Barbara S. Smith
- Arizona State University, School of Biological and Health Systems Engineering, Tempe, AZ 85210, USA
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Guo JZ, Sauerbrei BA, Cohen JD, Mischiati M, Graves AR, Pisanello F, Branson KM, Hantman AW. Disrupting cortico-cerebellar communication impairs dexterity. eLife 2021; 10:e65906. [PMID: 34324417 PMCID: PMC8321550 DOI: 10.7554/elife.65906] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2020] [Accepted: 06/28/2021] [Indexed: 01/19/2023] Open
Abstract
To control reaching, the nervous system must generate large changes in muscle activation to drive the limb toward the target, and must also make smaller adjustments for precise and accurate behavior. Motor cortex controls the arm through projections to diverse targets across the central nervous system, but it has been challenging to identify the roles of cortical projections to specific targets. Here, we selectively disrupt cortico-cerebellar communication in the mouse by optogenetically stimulating the pontine nuclei in a cued reaching task. This perturbation did not typically block movement initiation, but degraded the precision, accuracy, duration, or success rate of the movement. Correspondingly, cerebellar and cortical activity during movement were largely preserved, but differences in hand velocity between control and stimulation conditions predicted from neural activity were correlated with observed velocity differences. These results suggest that while the total output of motor cortex drives reaching, the cortico-cerebellar loop makes small adjustments that contribute to the successful execution of this dexterous movement.
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50
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Zhou Y, Liu E, Müller H, Cui B. Optical Electrophysiology: Toward the Goal of Label-Free Voltage Imaging. J Am Chem Soc 2021; 143:10482-10499. [PMID: 34191488 PMCID: PMC8514153 DOI: 10.1021/jacs.1c02960] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Measuring and monitoring the electrical signals transmitted between neurons is key to understanding the communication between neurons that underlies human perception, information processing, and decision-making. While electrode-based electrophysiology has been the gold standard, optical electrophysiology has opened up a new area in the past decade. Voltage-dependent fluorescent reporters enable voltage imaging with high spatial resolution and flexibility to choose recording locations. However, they exhibit photobleaching as well as phototoxicity and may perturb the physiology of the cell. Label-free optical electrophysiology seeks to overcome these hurdles by detecting electrical activities optically, without the incorporation of exogenous fluorophores in cells. For example, electrochromic optical recording detects neuroelectrical signals via a voltage-dependent color change of extracellular materials, and interferometric optical recording monitors membrane deformations that accompany electrical activities. Label-free optical electrophysiology, however, is in an early stage, and often has limited sensitivity and temporal resolution. In this Perspective, we review the recent progress to overcome these hurdles. We hope this Perspective will inspire developments of label-free optical electrophysiology techniques with high recording sensitivity and temporal resolution in the near future.
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Affiliation(s)
- Yuecheng Zhou
- Department of Chemistry, Stanford University, S285 ChEM-H/Wu Tsai Neuroscience Research Complex, Stanford, California 94305, United States
| | - Erica Liu
- Department of Chemistry, Stanford University, S285 ChEM-H/Wu Tsai Neuroscience Research Complex, Stanford, California 94305, United States
| | - Holger Müller
- Department of Physics, University of California, 366 LeConte Hall, Berkeley, California 94720, United States
- Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Bianxiao Cui
- Department of Chemistry, Stanford University, S285 ChEM-H/Wu Tsai Neuroscience Research Complex, Stanford, California 94305, United States
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