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Kuroda K, Yamamoto K, Isshiki R, Tokizawa R, Shiiba C, Hino S, Yamano N, Usui E, Miyakawa T, Miura T, Kamino K, Tamaki H, Nakayama A, Narihiro T. Metagenomic and metatranscriptomic analyses reveal uncharted microbial constituents responsible for polyhydroxybutyrate biodegradation in coastal waters. JOURNAL OF HAZARDOUS MATERIALS 2025; 487:137202. [PMID: 39827799 DOI: 10.1016/j.jhazmat.2025.137202] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2024] [Revised: 01/06/2025] [Accepted: 01/12/2025] [Indexed: 01/22/2025]
Abstract
Polyhydroxybutyrate (PHB) has attracted attention as a representative polymer for biodegradable plastics produced by microorganisms. Since information regarding the fate of PHB released into the environment is limited, it is necessary to identify them based on metagenomic information. We estimated the PHB biodegradability in coastal water samples collected from 15 near shore sites around Japan using oxygen consumption as an indicator in laboratory-scale incubation experiments and conducted 16S rRNA gene-based microbial community profiling. The PHB-biodegradation-rate was significantly positively correlated with the diversity indices of the microbial community in seawater prior to incubation, indicating that seawater with higher diversity is more advantageous for biodegradation. We identified 41 operational taxonomic units exhibiting a significant positive correlation between their abundance and PHB-degradation-rates; these included several microorganisms with hitherto unreported PHB-degrading ability. Next, we analyzed gene expression patterns over incubation time using seawater samples employing metagenomic and metatranscriptomic approaches. Fifty-seven putative extracellular PHB/PHA depolymerase genes were found in 38 metagenomic bins and their expression changed with increasing biodegradation rates, indicating that PHB released into the marine environment is subject to degradation by phylogenetically diverse PHB-depolymerase-producing bacteria. These findings should contribute to expanding the knowledge on degradation of biodegradable plastics by complex marine microbial ecosystems.
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Affiliation(s)
- Kyohei Kuroda
- Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 2-17-2-1 Tsukisamu-Higashi, Toyohira-ku, Sapporo, Hokkaido 062-8517, Japan
| | - Kyosuke Yamamoto
- Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Central 6, Higashi 1-1-1, Tsukuba, Ibaraki 305-8566, Japan
| | - Rino Isshiki
- Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 2-17-2-1 Tsukisamu-Higashi, Toyohira-ku, Sapporo, Hokkaido 062-8517, Japan
| | - Riho Tokizawa
- Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 2-17-2-1 Tsukisamu-Higashi, Toyohira-ku, Sapporo, Hokkaido 062-8517, Japan
| | - Chisato Shiiba
- Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Central 6, Higashi 1-1-1, Tsukuba, Ibaraki 305-8566, Japan
| | - Shodai Hino
- Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 1-8-31 Midorigaoka, Ikeda, Osaka 563-8577, Japan
| | - Naoko Yamano
- Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 1-8-31 Midorigaoka, Ikeda, Osaka 563-8577, Japan
| | - Erika Usui
- Biological Resource Center, National Institute of Technology and Evaluation (NBRC), 2-5-8 Kazusakamatari, Kisarazu, Chiba 292-0818, Japan
| | - Tomoyo Miyakawa
- Biological Resource Center, National Institute of Technology and Evaluation (NBRC), 2-5-8 Kazusakamatari, Kisarazu, Chiba 292-0818, Japan
| | - Takamasa Miura
- Biological Resource Center, National Institute of Technology and Evaluation (NBRC), 2-5-8 Kazusakamatari, Kisarazu, Chiba 292-0818, Japan
| | - Kei Kamino
- Biological Resource Center, National Institute of Technology and Evaluation (NBRC), 2-5-8 Kazusakamatari, Kisarazu, Chiba 292-0818, Japan
| | - Hideyuki Tamaki
- Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Central 6, Higashi 1-1-1, Tsukuba, Ibaraki 305-8566, Japan
| | - Atsuyoshi Nakayama
- Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 1-8-31 Midorigaoka, Ikeda, Osaka 563-8577, Japan.
| | - Takashi Narihiro
- Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 2-17-2-1 Tsukisamu-Higashi, Toyohira-ku, Sapporo, Hokkaido 062-8517, Japan.
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2
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Fan H, Hong X, Wang H, Gao F, Su Z, Yao H. Biodegradable microplastics affect tomato (Solanum lycopersicum L.) growth by interfering rhizosphere key phylotypes. JOURNAL OF HAZARDOUS MATERIALS 2025; 487:137208. [PMID: 39842126 DOI: 10.1016/j.jhazmat.2025.137208] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2024] [Revised: 01/03/2025] [Accepted: 01/12/2025] [Indexed: 01/24/2025]
Abstract
Biodegradable microplastics (BMPs), which form as biodegradable plastics degrade in agricultural settings, may influence plant growth and soil health. This study investigates the effects of BMPs on tomato growth and the microbial mechanisms involved. A greenhouse experiment applied BMPs-polyhydroxyalkanoate (PHA), polylactic acid (PLA), poly(butylene succinate-co-butylene adipate) (PBSA), and poly(butylene-adipate-co-terephthalate) (PBAT)-to tomato plants. The study analyzed their effects on plant growth, soil properties, and rhizosphere microbial communities. BMP treatments significantly reduced tomato biomass, height, and chlorophyll content compared to the control. PLA0.1 decreased the chlorophyll a/b ratio, while PLA1 increased it. Elemental analysis showed PLA1 increased phosphorus, calcium, and potassium in leaves, whereas all BMPs reduced nitrogen levels. BMPs also altered soil nitrogen and DOC levels, significantly shifting rhizosphere microbial communities, with a notable increase in Betaproteobacteria abundance. Ecological network analysis revealed that BMPs disrupted key microbial modules linked to plant growth. Beneficial modules positively associated with biomass and nutrient uptake were reduced under BMP treatments, whereas harmful microbial taxa in module 3, associated to poor plant health, were promoted. These shifts suggest that BMPs disrupt microbial ecological relationships critical for optimal plant growth. The findings highlight the potential negative impacts of BMPs on tomato growth through changes in microbial dynamics and soil properties.
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Affiliation(s)
- Haoxin Fan
- Research Center for Environmental Ecology and Engineering, School of Environmental Ecology and Biological Engineering, Wuhan Institute of Technology, Wuhan 430205, China
| | - Xincheng Hong
- Research Center for Environmental Ecology and Engineering, School of Environmental Ecology and Biological Engineering, Wuhan Institute of Technology, Wuhan 430205, China
| | - Hehua Wang
- Research Center for Environmental Ecology and Engineering, School of Environmental Ecology and Biological Engineering, Wuhan Institute of Technology, Wuhan 430205, China
| | - Feng Gao
- Research Center for Environmental Ecology and Engineering, School of Environmental Ecology and Biological Engineering, Wuhan Institute of Technology, Wuhan 430205, China; Zhejiang Key Laboratory of Urban Environmental Processes and Pollution Control, Ningbo Urban Environment Observation and Research Station, Chinese Academy of Sciences, Ningbo, China; Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China
| | - Ziqi Su
- Research Center for Environmental Ecology and Engineering, School of Environmental Ecology and Biological Engineering, Wuhan Institute of Technology, Wuhan 430205, China
| | - Huaiying Yao
- Research Center for Environmental Ecology and Engineering, School of Environmental Ecology and Biological Engineering, Wuhan Institute of Technology, Wuhan 430205, China; Zhejiang Key Laboratory of Urban Environmental Processes and Pollution Control, Ningbo Urban Environment Observation and Research Station, Chinese Academy of Sciences, Ningbo, China; Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China.
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Ravi J, Ponnuraj K, Ragunathan P. Enzymatic biodegradation of Poly(ε-Caprolactone) (PCL) by a thermostable cutinase from a mesophilic bacteria Mycobacterium marinum. THE SCIENCE OF THE TOTAL ENVIRONMENT 2025; 972:179066. [PMID: 40088791 DOI: 10.1016/j.scitotenv.2025.179066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2025] [Accepted: 03/05/2025] [Indexed: 03/17/2025]
Abstract
Cutinases are esterases that can be potentially used as biocatalysts for polycaprolactone (PCL) degradation. In order to develop an efficient enzyme for biodegradation and recycling of PCL, MmCut3, a novel cutinase derived from Mycobacterium marinum has been exploited. MmCut3 demonstrated activity on substrates such as p-Nitrophenyl acetate and butyrate (C2, C4), Triolein (C18), and Cutin (hydroxy C16, C18), with optimal performance at pH 6.5-8.5 and 45 °C. The enzyme exhibited remarkable thermal stability, retaining activity up to 90 °C due to reversible structural changes and dimerization. Its activity increased by 150 % in the presence of calcium ions and was inhibited by EDTA, indicating a metal-dependent mechanism. MmCut3 remained stable in organic solvents (10-60 %) and surfactants (1 and 10 mM). PCL biodegradation by MmCut3 primarily targeted amorphous regions, confirmed by FT-IR and DSC analysis. Turbidimetric studies revealed that calcium ions enhanced hydrolysis by increasing the enzyme affinity for binding to the polymer surface, consistent with the Langmuir model. Molecular docking identified key interactions with PCL diol, highlighting MmCut3 potential as a biocatalyst for plastic degradation and sustainable material production.
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Affiliation(s)
- Jayashree Ravi
- CAS in Crystallography and Biophysics, University of Madras, Chennai 600025, India
| | - Karthe Ponnuraj
- CAS in Crystallography and Biophysics, University of Madras, Chennai 600025, India
| | - Preethi Ragunathan
- CAS in Crystallography and Biophysics, University of Madras, Chennai 600025, India.
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4
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Anjulal H, Sowani H, Zinjarde S. Understanding the role of poly(3-hydroxybutyrate) depolymerases in waste management. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2025; 380:124925. [PMID: 40132380 DOI: 10.1016/j.jenvman.2025.124925] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2024] [Revised: 02/25/2025] [Accepted: 03/07/2025] [Indexed: 03/27/2025]
Abstract
Since conventional plastics are poorly degradable and harmful to living organisms, there is a need to look for alternative options such as poly(3-hydroxybutyrate) - PHB. This polymer is biodegradable via PHB depolymerases (PHBDs). Literature survey reveals that there are no comprehensive updates on PHBDs and in the current review, details regarding extracellular and intracellular forms of the enzyme are presented. Phylogenetically diverse PHBD-producing microorganisms are prevalent in a variety of natural and man-made habitats. These enzymes have been purified from different organisms and are seen to be active over a wide range of pH and temperatures. In general, extracellular PHBDs are made up of four constituents - signal peptide, catalytic domain [with a signature triad (serine, aspartate and histidine) and an oxyanion histidine], linker domain and substrate binding domain that enable degradation of PHB. Intracellular PHBDs have been mainly studied in bacterial genera such as Rhodobacter, Rhodospirillum, Ralstonia, Zoogloea, Pseudomonas, Sinorhizobium and Bacillus. Genes encoding them have been identified, characterized and cloned in other organisms. PHBD producers are envisioned to play a significant role in developing ecofriendly methods for removing PHB wastes thereby highlighting their practical relevance. Development of appropriate consortia including diverse PHBD producers and their introduction in waste disposal sites would enable treatment of PHB containing wastes. By using bioinformatics and synthetic biology-based approaches, further investigations on PHBDs from unexplored microorganisms can be undertaken and their role in the bioplastic waste management can be unraveled.
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Affiliation(s)
- H Anjulal
- Department of Biotechnology (with Jointly merged Institute of Bioinformatics and Biotechnology), Savitribai Phule Pune University, Pune 411007, India
| | - Harshada Sowani
- Department of Biotechnology (with Jointly merged Institute of Bioinformatics and Biotechnology), Savitribai Phule Pune University, Pune 411007, India
| | - Smita Zinjarde
- Department of Biotechnology (with Jointly merged Institute of Bioinformatics and Biotechnology), Savitribai Phule Pune University, Pune 411007, India.
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Miller KE, Jahn AC, Strohm BM, Demyttenaere SM, Nikolai PJ, Behm BD, Paracha MS, Miri MJ. Polymers Used in Transparent Face Masks-Characterization, Assessment, and Recommendations for Improvements Including Their Sustainability. Polymers (Basel) 2025; 17:937. [PMID: 40219327 PMCID: PMC11990979 DOI: 10.3390/polym17070937] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2025] [Accepted: 03/24/2025] [Indexed: 04/14/2025] Open
Abstract
By 2050, 700 million people will have hearing loss, requiring rehabilitation services. For about 80% of deaf and hard-hearing individuals, face coverings hinders their ability to lip-read. Also, the normal hearing population experiences issues socializing when wearing face masks. Therefore, there is a need to evaluate and further develop transparent face masks. In this work, the properties of polymers used in ten commercial transparent face masks were determined. The chemical composition of the polymers including nose bridges and ear loops was determined by FTIR spectroscopy. The focus of the characterizations was on the polymers in the transparent portion of each face mask. In half of the masks, the transparent portion contained PET, while in the other masks it consisted of PETG, PC, iPP, PVC, or SR (silicone rubber). Most masks had been coated with anti-fog material, and a few with scratch-resistant compounds, as indicated by XRF/EDX, SEM/EDX, and contact angle measurements. Thermal, molecular weight, and mechanical properties were determined by TGA/DSC, SEC, and tensile tests, respectively. To measure optical properties, UV-Vis reflectance and UV-Vis haze were applied. An assessment of the ten masks and recommendations to develop better transparent face masks were made, including improvement of their sustainability.
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Affiliation(s)
- Katie E. Miller
- School of Chemistry and Materials Science, Rochester Institute of Technology, Rochester, NY 14623, USA
- National Technical Institute for the Deaf, Rochester Institute of Technology, Rochester, NY 14623, USA
| | - Ann-Carolin Jahn
- School of Chemistry and Materials Science, Rochester Institute of Technology, Rochester, NY 14623, USA
- National Technical Institute for the Deaf, Rochester Institute of Technology, Rochester, NY 14623, USA
| | - Brian M. Strohm
- School of Chemistry and Materials Science, Rochester Institute of Technology, Rochester, NY 14623, USA
| | - Shao M. Demyttenaere
- School of Chemistry and Materials Science, Rochester Institute of Technology, Rochester, NY 14623, USA
| | - Paul J. Nikolai
- School of Chemistry and Materials Science, Rochester Institute of Technology, Rochester, NY 14623, USA
| | - Byron D. Behm
- National Technical Institute for the Deaf, Rochester Institute of Technology, Rochester, NY 14623, USA
| | - Mariam S. Paracha
- National Technical Institute for the Deaf, Rochester Institute of Technology, Rochester, NY 14623, USA
| | - Massoud J. Miri
- School of Chemistry and Materials Science, Rochester Institute of Technology, Rochester, NY 14623, USA
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6
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Zhang SQ, Yuan HZ, Ma X, Wei DX. Carbon cycle of polyhydroxyalkanoates (CCP): Biosynthesis and biodegradation. ENVIRONMENTAL RESEARCH 2025; 269:120904. [PMID: 39842755 DOI: 10.1016/j.envres.2025.120904] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2024] [Revised: 01/16/2025] [Accepted: 01/18/2025] [Indexed: 01/24/2025]
Abstract
Carbon neutrality of bioactive materials is vital in promoting sustainable development for human society. Polyhydroxyalkanoates (PHAs) is a class of typical carbon-cycle bio-polyesters synthesized by microorganisms using sugars, organic acids, and even carbon dioxide. PHAs first degrade into 3-hydroxybutyrate (3HB) before further breaking down into carbon dioxide and water, aligning with carbon-neutral goals. Due to their diverse molecular structures and material properties, excellent biocompatibility, and controlled biodegradability, PHAs have found widespread applications in environmental protection and biomedicine. However, challenges persist in achieving cost-effective PHA production and reusing degradation products. Additionally, understanding the carbon pathways in PHA synthesis and degradation remains limited. In this review, we first introduce the concept of the Carbon Cycle of Polyhydroxyalkanoates (CCP) and describe the biosynthetic pathways of aromatic monomers, carbon conversion processes, and PHA degradation in compost, soil, and marine environments. This will help us fully understand the sustainable utilization value of PHA as a biomaterial. Future trends point to integrating synthetic biology with emerging technologies to produce low-cost, high-value PHAs, supporting global green and low-carbon development.
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Affiliation(s)
- Si-Qin Zhang
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, School of Medicine, Department of Life Sciences and Medicine, Northwest University, Xi'an, 710069, China; Shaanxi Key Laboratory for Carbon Neutral Technology, Xi'an, 710069, China
| | - Hao-Zhe Yuan
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, School of Medicine, Department of Life Sciences and Medicine, Northwest University, Xi'an, 710069, China
| | - Xue Ma
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, School of Medicine, Department of Life Sciences and Medicine, Northwest University, Xi'an, 710069, China
| | - Dai-Xu Wei
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, School of Medicine, Department of Life Sciences and Medicine, Northwest University, Xi'an, 710069, China; Shaanxi Key Laboratory for Carbon Neutral Technology, Xi'an, 710069, China; Clinical Medical College and Affiliated Hospital of Chengdu University, Chengdu University, Chengdu, Sichuan, 610081 China.
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Huang S, Dong Q, Che S, Li R, Tang KHD. Bioplastics and biodegradable plastics: A review of recent advances, feasibility and cleaner production. THE SCIENCE OF THE TOTAL ENVIRONMENT 2025; 969:178911. [PMID: 40022973 DOI: 10.1016/j.scitotenv.2025.178911] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/25/2024] [Revised: 02/12/2025] [Accepted: 02/17/2025] [Indexed: 03/04/2025]
Abstract
As awareness of plastic pollution increases, there is a growing emphasis on sustainable alternatives. Bioplastics and biodegradable plastics have surfaced as potential substitutes. Yet, their limited properties and high production costs hinder their practicality. This paper systematically reviews more than 280 articles to comprehensively outline the advantages and drawbacks of emerging bioplastics and biodegradable plastics, alongside advancements in cleaner production methods. Bioplastics, sourced from renewable materials, decrease dependency on fossil fuels and help lower carbon footprints during production and disposal. Some bioplastics, such as polylactic acid (PLA) and polyhydroxyalkanoates, are compostable, but their manufacturing costs usually surpass that of conventional plastics. Additionally, certain bioplastics exhibit lower mechanical strength, heat resistance, or durability. PLA and bio-polybutylene succinate (bio-PBS) are viable for single-use items and biodegradable products, with scalable production using established technologies, although bio-PBS is somewhat pricier than PLA. Biodegradable plastics lessen environmental impact by naturally degrading and can be composted in industrial settings, providing an eco-friendly disposal option. However, they require specific industrial composting conditions for complete degradation, which can lead to microplastic formation in the environment. PBS, polybutylene adipate terephthalate, and polybutylene succinate-co-adipate seem to be the most promising options, with PBS being a strong contender for replacing traditional plastics due to its biodegradable and compostable nature. It has the potential to be partially or entirely bio-based (bio-PBS). Innovative technologies, especially next-generation industrial biotechnology and microbial cell factories, offer cleaner methods for synthesizing these plastics. This review aids in identifying feasible and sustainable alternatives to conventional plastics.
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Affiliation(s)
- Shirui Huang
- College of Natural Resources and Environment, Northwest A&F University (NWAFU), Yangling, Shaanxi 712100, China; The Department of Environmental Science, The University of Arizona (UA), Tucson, AZ 85721, USA; School of Natural Resources and Environment, NWAFU-UA Microcampus, Yangling, Shaanxi 712100, China
| | - Qianhe Dong
- College of Natural Resources and Environment, Northwest A&F University (NWAFU), Yangling, Shaanxi 712100, China; The Department of Environmental Science, The University of Arizona (UA), Tucson, AZ 85721, USA; School of Natural Resources and Environment, NWAFU-UA Microcampus, Yangling, Shaanxi 712100, China
| | - Sichen Che
- College of Natural Resources and Environment, Northwest A&F University (NWAFU), Yangling, Shaanxi 712100, China; The Department of Environmental Science, The University of Arizona (UA), Tucson, AZ 85721, USA; School of Natural Resources and Environment, NWAFU-UA Microcampus, Yangling, Shaanxi 712100, China
| | - Ronghua Li
- College of Natural Resources and Environment, Northwest A&F University (NWAFU), Yangling, Shaanxi 712100, China; School of Natural Resources and Environment, NWAFU-UA Microcampus, Yangling, Shaanxi 712100, China
| | - Kuok Ho Daniel Tang
- The Department of Environmental Science, The University of Arizona (UA), Tucson, AZ 85721, USA; School of Natural Resources and Environment, NWAFU-UA Microcampus, Yangling, Shaanxi 712100, China.
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8
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Song D, Jin G, Su Z, Ge C, Fan H, Yao H. Influence of biodegradable microplastics on soil carbon cycling: Insights from soil respiration, enzyme activity, carbon use efficiency and microbial community. ENVIRONMENTAL RESEARCH 2025; 266:120558. [PMID: 39644987 DOI: 10.1016/j.envres.2024.120558] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2024] [Revised: 11/26/2024] [Accepted: 12/04/2024] [Indexed: 12/09/2024]
Abstract
The rising prevalence of biodegradable microplastics (BMPs) in soils has raised concerns about their impacts on soil ecosystems and carbon cycling. This study investigates the effects of different BMPs on soil carbon cycling, focusing on soil respiration, enzyme activities, and carbon use efficiency (CUE) from 13C-labeled dissolved organic carbon (DOC) in an upland soil. The BMPs tested were polybutylene adipate terephthalate (PBAT), polyhydroxyalkanoates (PHA), and polylactic acid (PLA), at high (H, 1% w/w) and low (L, 0.1% w/w) concentrations. Over a 64-day incubation, cumulative CO2 emissions increased in the PHA_L, PHA_H, and PLA_H treatments, with the highest rise of 665% PHA_H treatment. Microbial biomass carbon (MBC) ranged from 97.73 ± 3.03 mg C kg⁻1 in the control to 223.09 ± 7.91 mg C kg⁻1 in PHA_H, with microbial CUE peaking at 0.26 in PHA_H. Enzymatic activities were notably affected: β-glucosidase (BG) increased by 50% in PLA_H, while cellobiohydrolase (CBH) activity decreased by up to 62% in PBAT_H and PLA_L. N-acetylglucosaminidase (NAG) and phosphatase (AP) activities were highest in PHA_H, indicating enhanced nutrient cycling. Microbial community structure based on PLFAs was significantly altered, with total PLFA content increasing by 191% in PHA_H. Correlation analysis and partial least squares path modeling (PLS-PM) revealed that BMP concentration, DOC content, and microbial diversity were positively correlated with microbial CUE. This study highlights the significant role of BMPs in influencing soil carbon cycling, primarily through their effects on microbial diversity and soil enzyme activities.
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Affiliation(s)
- Dan Song
- Research Center for Environmental Ecology and Engineering, School of Environmental Ecology and Biological Engineering, Wuhan Institute of Technology, Wuhan, 430205, China
| | - Guoqin Jin
- Research Center for Environmental Ecology and Engineering, School of Environmental Ecology and Biological Engineering, Wuhan Institute of Technology, Wuhan, 430205, China
| | - Ziqi Su
- Research Center for Environmental Ecology and Engineering, School of Environmental Ecology and Biological Engineering, Wuhan Institute of Technology, Wuhan, 430205, China
| | - Chaorong Ge
- Research Center for Environmental Ecology and Engineering, School of Environmental Ecology and Biological Engineering, Wuhan Institute of Technology, Wuhan, 430205, China
| | - Haoxin Fan
- Research Center for Environmental Ecology and Engineering, School of Environmental Ecology and Biological Engineering, Wuhan Institute of Technology, Wuhan, 430205, China.
| | - Huaiying Yao
- Research Center for Environmental Ecology and Engineering, School of Environmental Ecology and Biological Engineering, Wuhan Institute of Technology, Wuhan, 430205, China; Zhejiang Key Laboratory of Urban Environmental Processes and Pollution Control, Ningbo Urban Environment Observation and Research Station, Chinese Academy of Sciences, Ningbo, China; Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, 361021, China.
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9
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Le Gué L, Arhant M, Davies P, Vincent B, Tanguy E. Biodegradable twine for trawl fishing: Seawater ageing and net modelling. MARINE POLLUTION BULLETIN 2025; 211:117433. [PMID: 39689658 DOI: 10.1016/j.marpolbul.2024.117433] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2024] [Revised: 12/05/2024] [Accepted: 12/05/2024] [Indexed: 12/19/2024]
Abstract
Fishing gears are designed to catch marine species, but when lost at sea, they can continue to trap and kill aquatic life, a phenomenon known as ghost fishing. This study evaluated the use of a biodegradable twine made from poly(butylene succinate)/poly(butylene adipate terephthalate) (PBS/PBAT) in trawl fishing. The assessment included mechanical testing, trawl modelling, and seawater ageing simulations to explore potential loss scenarios. Mechanical tests indicated that the PBS/PBAT braid was about half as strong as high-density polyethylene (HDPE) but was suitable for braiding and netting. After 3 years in seawater, PBS/PBAT monofilaments showed biotic degradation, with strength losses of 20 % at 15 °C and 80 % at 25 °C. This suggests that gear made from this polymer would degrade faster than conventional gear if lost. Trawl modelling further demonstrated that trawl performance was only slightly affected by material change and ageing, highlighting the potential for reducing ghost fishing with less persistent twine.
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Affiliation(s)
- Louis Le Gué
- IFREMER RDT, Research and Technology Development Unit, 1625 route de Sainte-Anne, Plouzané 29280, France; DECOD (Ecosystem Dynamics and Sustainability), IFREMER, INRAE, Institut Agro, Lorient 56325, France.
| | - Mael Arhant
- IFREMER RDT, Research and Technology Development Unit, 1625 route de Sainte-Anne, Plouzané 29280, France
| | - Peter Davies
- IFREMER RDT, Research and Technology Development Unit, 1625 route de Sainte-Anne, Plouzané 29280, France
| | - Benoit Vincent
- DECOD (Ecosystem Dynamics and Sustainability), IFREMER, INRAE, Institut Agro, Lorient 56325, France
| | - Erwan Tanguy
- Le Drezen, 12 rue de Kélareun, Le Guilvinec 29730, France
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10
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de Oliveira MVD, Calandrini G, da Costa CHS, da Silva de Souza CG, Alves CN, Silva JRA, Lima AH, Lameira J. Evaluating cutinase from Fusarium oxysporum as a biocatalyst for the degradation of nine synthetic polymer. Sci Rep 2025; 15:2887. [PMID: 39843897 PMCID: PMC11754424 DOI: 10.1038/s41598-024-84718-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2024] [Accepted: 12/26/2024] [Indexed: 01/24/2025] Open
Abstract
Plastic poses a significant environmental impact due to its chemical resilience, leading to prolonged and degradation times and resulting in widespread adverse effects on global flora and fauna. Cutinases are essential enzymes in the biodegradation process of synthetic polymers like polyethylene terephthalate (PET), which recognized organisms can break down. Here, we used molecular dynamics and binding free energy calculations to explore the interaction of nine synthetic polymers, including PET, with Cutinase from Fusarium oxysporum (FoCut). According to our findings, the polymers poly(ethylene terephthalate) (PET), poly(3-hydroxybutyrate-co-3-hydroxyhexanoate) (PHBH), poly(butylene succinate) (PBS), poly(butylene adipate-co-terephthalate) (PBAT) and poly(ε-caprolactone) (PCL) can bind to the Cutinase enzyme from F. oxysporum, indicating potential biodegradation activity for these polymers. PET exhibited the highest binding affinity (- 34.26 kcal/mol). Besides PET, the polymers PHBH, PBS, PBAT, and PCL also demonstrated significant affinities for the FoCut enzyme, with binding values of - 18.44, - 29.71, - 22.78, and - 22.26 kcal/mol, respectively. Additionally, analysis of the phylogenetic tree of cutinases produced by different organisms demonstrated that even though the organisms belong to different kingdoms, the cutinase from F. oxysporum (FoCut) showed biological similarity in its activity in degrading polymers with the cutinase enzyme from the bacterium Kineococcus radiotolerans and the fungus Moniliophthora roreri. Furthermore, the phylogenetic analysis demonstrated that the PETase enzyme has a very high similarity with the bacterial cutinase enzyme than with the fungal cutinase, therefore demonstrating that the PETase enzyme from Ideonella sakaiensis can easily be a modified bacterial cutinase enzyme that created a unique feature in biodegrading only the pet polymer through an evolutionary process due to its environment and its biochemical need for carbon. Our data demonstrate that bacterial cutinase enzymes have the same common ancestor as the PETase enzyme. Therefore, cutinases and PETase are interconnected through their biological similarity in biodegrading polymers. We demonstrated that important conserved regions, such as the Ser-Asp-His catalytic triad, exist in the enzyme's catalytic site and that all Cut enzymes from different organisms have the same region to couple with the polymer structures.
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Affiliation(s)
- Maycon Vinicius Damasceno de Oliveira
- Laboratório de Planejamento e Desenvolvimento de Fármacos, Instituto de Ciências Exatas e Naturais, Universidade Federal do Pará, Belém, Pará, 66075-110, Brazil
| | - Gabriel Calandrini
- Núcleo de Ecologia Aquática e Pesca (NEAP), Universidade Federal do Pará, Belém, Pará, 66075-110, Brazil.
| | | | - Carlos Gabriel da Silva de Souza
- Laboratório de Planejamento e Desenvolvimento de Fármacos, Instituto de Ciências Exatas e Naturais, Universidade Federal do Pará, Belém, Pará, 66075-110, Brazil
| | - Cláudio Nahum Alves
- Laboratório de Planejamento e Desenvolvimento de Fármacos, Instituto de Ciências Exatas e Naturais, Universidade Federal do Pará, Belém, Pará, 66075-110, Brazil
| | - José Rogério A Silva
- Laboratório de Planejamento e Desenvolvimento de Fármacos, Instituto de Ciências Exatas e Naturais, Universidade Federal do Pará, Belém, Pará, 66075-110, Brazil
- Catalysis and Peptide Research Unit, University of KwaZulu-Natal, Durban, 4000, South Africa
| | - Anderson H Lima
- Laboratório de Planejamento e Desenvolvimento de Fármacos, Instituto de Ciências Exatas e Naturais, Universidade Federal do Pará, Belém, Pará, 66075-110, Brazil
| | - Jerônimo Lameira
- Laboratório de Planejamento e Desenvolvimento de Fármacos, Instituto de Ciências Exatas e Naturais, Universidade Federal do Pará, Belém, Pará, 66075-110, Brazil.
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11
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Lalonde JN, Pilania G, Marrone BL. Materials designed to degrade: structure, properties, processing, and performance relationships in polyhydroxyalkanoate biopolymers. Polym Chem 2025; 16:235-265. [PMID: 39464417 PMCID: PMC11498330 DOI: 10.1039/d4py00623b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2024] [Accepted: 10/05/2024] [Indexed: 10/29/2024]
Abstract
Conventional plastics pose significant environmental and health risks across their life cycle, driving intense interest in sustainable alternatives. Among these, polyhydroxyalkanoates (PHAs) stand out for their biocompatibility, degradation characteristics, and diverse applications. Yet, challenges like production cost, scalability, and limited chemical variety hinder their widespread adoption, impacting material selection and design. This review examines PHA research through the lens of the classical materials tetrahedron, exploring property-structure-processing-performance (PSPP) relationships. By analyzing recent literature and addressing current limitations, we gain valuable insights into PHA development. Despite challenges, we remain optimistic about the role of PHAs in transitioning towards a circular plastic economy, emphasizing the need for further research to unlock their full potential.
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Affiliation(s)
- Jessica N Lalonde
- Department of Mechanical Engineering and Materials Science, Duke University Durham NC 27708 USA
- Bioscience Division, Los Alamos National Laboratory Los Alamos NM 87545 USA
| | | | - Babetta L Marrone
- Bioscience Division, Los Alamos National Laboratory Los Alamos NM 87545 USA
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12
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Nilsson F, Elf P, Capezza A, Wei X, Tsegaye B, Polisetti V, Svagan AJ, Hedenqvist M. Environmental concerns on water-soluble and biodegradable plastics and their applications - A review. THE SCIENCE OF THE TOTAL ENVIRONMENT 2025; 958:177926. [PMID: 39693661 DOI: 10.1016/j.scitotenv.2024.177926] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2024] [Revised: 11/10/2024] [Accepted: 12/02/2024] [Indexed: 12/20/2024]
Abstract
Water-soluble polymers are materials rapidly growing in volume and in number of materials and applications. Examples include synthetic plastics such as polyacrylamide, polyacrylic acid, polyethylene glycol, polyethylene oxide and polyvinyl alcohol, with applications ranging from cosmetics and paints to water purification, pharmaceutics and food packaging. Despite their abundance, their environmental concerns (e.g., bioaccumulation, toxicity, and persistence) are still not sufficiently assessed, especially since water soluble plastics are often not biodegradable, due to their chemical structure. This review aims to overview the most important water-soluble and biodegradable polymers, their applications, and their environmental impact. Degradation products from water-insoluble polymers designed for biodegradation can also be water soluble. Most water-soluble plastics are not immediately harmful for humans and the environment, but the degradation products are sometimes more hazardous, e.g. for polyacrylamide. An increased use of water-soluble plastics could also introduce unanticipated environmental hazards. Therefore, excessive use of water-soluble plastics in applications where they can enter the environment should be discouraged. Often the plastics can be omitted or replaced by natural polymers with lower risks. It is recommended to include non-biodegradable water-soluble plastics in regulations for microplastics, to make risk assessments for different water-soluble plastics and to develop labels for flushable materials.
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Affiliation(s)
- Fritjof Nilsson
- Department of Fibre and Polymer Technology, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, SE-100 44 Stockholm, Sweden; FSCN Research Centre, Mid Sweden University, 85170 Sundsvall, Sweden.
| | - Patric Elf
- Department of Fibre and Polymer Technology, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, SE-100 44 Stockholm, Sweden
| | - Antonio Capezza
- Department of Fibre and Polymer Technology, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, SE-100 44 Stockholm, Sweden
| | - Xinfeng Wei
- Department of Fibre and Polymer Technology, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, SE-100 44 Stockholm, Sweden
| | - Bahiru Tsegaye
- Department of Fibre and Polymer Technology, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, SE-100 44 Stockholm, Sweden
| | - Veerababu Polisetti
- Department of Fibre and Polymer Technology, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, SE-100 44 Stockholm, Sweden
| | - Anna J Svagan
- Department of Fibre and Polymer Technology, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, SE-100 44 Stockholm, Sweden
| | - Mikael Hedenqvist
- Department of Fibre and Polymer Technology, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, SE-100 44 Stockholm, Sweden
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13
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Read T, Chaléat C, Laycock B, Pratt S, Lant P, Chan CM. Lifetimes and mechanisms of biodegradation of polyhydroxyalkanoate (PHA) in estuarine and marine field environments. MARINE POLLUTION BULLETIN 2024; 209:117114. [PMID: 39418875 DOI: 10.1016/j.marpolbul.2024.117114] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2024] [Revised: 10/04/2024] [Accepted: 10/05/2024] [Indexed: 10/19/2024]
Abstract
Coastal cities face significant challenges from plastic pollution, with most plastics being resistant to biodegradation. Biodegradable plastics are increasingly used to address this issue, particularly for items prone to entering, and then accumulating, in waterways, through littering or leakage. Among biodegradable plastics, polyhydroxyalkanoates (PHAs) are notable as bioderived, bacterially synthesised aliphatic polyesters that are readily biodegradable in varied environments. This study focuses on the lifetimes and biodegradation behaviour of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV) sheets submerged in five different aquatic environments (under both surface and benthic conditions) within a single coastal zone over 51 weeks. The biodegradation was characterised through mass and thickness loss, and changes in surface morphology, thermal and mechanical properties, and molecular weight. The findings revealed that the lifetimes of PHBV sheets varied between benthic and surface sites, with all benthic sites exhibiting faster biodegradation rates (0.068 ± 0.019 mg.d-1.cm-2 to 0.163 ± 0.048 mg.d-1.cm-2) compared to the surface (0.032 ± 0.015 mg.d-1.cm-2). Lag times to initiation of biodegradation in the Marina benthic and River benthic sites were similar (9-25 days) with the two other benthic sites (Sea and Mesocosm) comparable with the Marina surface ranging from 41 to 110 days), indicating that the local environment has a stronger influence on lag time as opposed to the specific rate of mass loss following biodegradation onset. UV exposure did not impact the crystallinity of the surface sheets, which remained stable throughout the exposure period. Overall, if thin- walled, (∼150 μm) products made from PHA do leak into the aquatic environment and remain buoyant, then their lifetimes are forecast to be within 1-2 years; if they settle in benthic environments, their lifetimes are likely to be between 4 and 9 months.
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Affiliation(s)
- Tracey Read
- School of Chemical Engineering, The University of Queensland, St Lucia, Brisbane, Queensland 4072, Australia
| | - Céline Chaléat
- School of Chemical Engineering, The University of Queensland, St Lucia, Brisbane, Queensland 4072, Australia
| | - Bronwyn Laycock
- School of Chemical Engineering, The University of Queensland, St Lucia, Brisbane, Queensland 4072, Australia
| | - Steven Pratt
- School of Chemical Engineering, The University of Queensland, St Lucia, Brisbane, Queensland 4072, Australia.
| | - Paul Lant
- School of Chemical Engineering, The University of Queensland, St Lucia, Brisbane, Queensland 4072, Australia
| | - Clement Matthew Chan
- School of Chemical Engineering, The University of Queensland, St Lucia, Brisbane, Queensland 4072, Australia
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14
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Asri NA, Sezali NAA, Ong HL, Mohd Pisal MH, Lim YH, Fang J. Review on Biodegradable Aliphatic Polyesters: Development and Challenges. Macromol Rapid Commun 2024; 45:e2400475. [PMID: 39445644 DOI: 10.1002/marc.202400475] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2024] [Revised: 10/12/2024] [Indexed: 10/25/2024]
Abstract
Biodegradable polymers are gaining attention as alternatives to non-biodegradable plastics to address environmental issues. With the rising global demand for plastic products, the development of non-toxic, biodegradable plastics is a significant topic of research. Aliphatic polyester, the most common biodegradable polyester, is notable for its semi-crystalline structure and can be synthesized from fossil fuels, microbial fermentation, and plants. Due to great properties like being lightweight, biodegradable, biocompatible, and non-toxic, aliphatic polyesters are used in packaging, medical, agricultural, wearable devices, sensors, and textile applications. The biodegradation rate, crucial for biodegradable polymers, is discussed in this review as it is influenced by their structural properties and environmental conditions. This review discusses currently available biodegradable polyesters, their emerging applications, and the challenges in their commercialization. As research in this area grows, this review emphasizes the innovation in biodegradable aliphatic polyesters and their role in advancing environmental sustainability.
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Affiliation(s)
- Nur Asnani Asri
- Faculty of Chemical Engineering & Technology, Universiti Malaysia Perlis (UniMAP), Arau, Perlis, 02600, Malaysia
| | - Nur Atirah Afifah Sezali
- Faculty of Chemical Engineering & Technology, Universiti Malaysia Perlis (UniMAP), Arau, Perlis, 02600, Malaysia
| | - Hui Lin Ong
- Faculty of Chemical Engineering & Technology, Universiti Malaysia Perlis (UniMAP), Arau, Perlis, 02600, Malaysia
- Centre of Excellence for Biomass Utilization and Taiwan-Malaysia Innovation Centre for Clean Water and Sustainable Energy (WISE Centre), Universiti Malaysia Perlis (UniMAP), Arau, Perlis, 02600, Malaysia
| | - Mohd Hanif Mohd Pisal
- Faculty of Chemical Engineering & Technology, Universiti Malaysia Perlis (UniMAP), Arau, Perlis, 02600, Malaysia
- Centre of Excellence for Biomass Utilization and Taiwan-Malaysia Innovation Centre for Clean Water and Sustainable Energy (WISE Centre), Universiti Malaysia Perlis (UniMAP), Arau, Perlis, 02600, Malaysia
| | - Ye Heng Lim
- Platinum Phase Sdn. Bhd., Plot 155, Jalan PKNK Utama, Kawasan Perusahaan Taman Ria Jaya, Sungai Petani, Kedah, 08000, Malaysia
| | - Jian Fang
- College of Textile and Clothing Engineering, Soochow University, Suzhou, 215123, China
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15
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Martinka Maksymiak M, Andrä-Żmuda S, Sikorska W, Janeczek H, Chaber P, Musioł M, Godzierz M, Kowalczuk M, Adamus G. Structural and Thermal Characterization of Bluepha ® Biopolyesters: Insights into Molecular Architecture and Potential Applications. MATERIALS (BASEL, SWITZERLAND) 2024; 17:5863. [PMID: 39685298 DOI: 10.3390/ma17235863] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2024] [Revised: 11/21/2024] [Accepted: 11/26/2024] [Indexed: 12/18/2024]
Abstract
This study presents an in-depth molecular and structural characterization of novel biopolyesters developed under the trademark Bluepha®. The primary aim was to elucidate the relationship between chemical structure, chain architecture, and material properties of these biopolyesters to define their potential applications across various sectors. Proton nuclear magnetic resonance (1H NMR) analysis identified the biopolyesters as poly[(R)-3-hydroxybutyrate-co-(R)-3-hydroxyhexanoate] (PHBH) copolymers, containing 4% and 10% molar content of hydroxyhexanoate (HH) units, respectively. Mass spectrometry analysis of PHBH oligomers, produced via controlled thermal degradation, further confirmed the chemical structure and molecular architecture of the PHBH samples. Additionally, multistage electrospray ionization mass spectrometry (ESI-MS/MS) provided insights into the chemical homogeneity and arrangement of comonomer units within the copolyester chains, revealing a random distribution of hydroxyhexanoate (HH) and hydroxybutyrate (HB) units along the PHBH chains. X-ray diffraction (XRD) patterns demonstrated partial crystallinity in the PHBH samples. The thermal properties, including glass transition temperature (Tg), melting temperature (Tm), and melting enthalpy (ΔHm), were found to be lower in PHBH than in poly(R)-3-hydroxybutyrate (PHB), suggesting a broader application potential for the tested PHBH biopolyesters.
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Affiliation(s)
- Magdalena Martinka Maksymiak
- Centre of Polymer and Carbon Materials, Polish Academy of Sciences, 34. M. Curie-Skłodowska St., 41-819 Zabrze, Poland
| | - Silke Andrä-Żmuda
- Centre of Polymer and Carbon Materials, Polish Academy of Sciences, 34. M. Curie-Skłodowska St., 41-819 Zabrze, Poland
| | - Wanda Sikorska
- Centre of Polymer and Carbon Materials, Polish Academy of Sciences, 34. M. Curie-Skłodowska St., 41-819 Zabrze, Poland
| | - Henryk Janeczek
- Centre of Polymer and Carbon Materials, Polish Academy of Sciences, 34. M. Curie-Skłodowska St., 41-819 Zabrze, Poland
| | - Paweł Chaber
- Centre of Polymer and Carbon Materials, Polish Academy of Sciences, 34. M. Curie-Skłodowska St., 41-819 Zabrze, Poland
| | - Marta Musioł
- Centre of Polymer and Carbon Materials, Polish Academy of Sciences, 34. M. Curie-Skłodowska St., 41-819 Zabrze, Poland
| | - Marcin Godzierz
- Centre of Polymer and Carbon Materials, Polish Academy of Sciences, 34. M. Curie-Skłodowska St., 41-819 Zabrze, Poland
| | - Marek Kowalczuk
- Centre of Polymer and Carbon Materials, Polish Academy of Sciences, 34. M. Curie-Skłodowska St., 41-819 Zabrze, Poland
| | - Grazyna Adamus
- Centre of Polymer and Carbon Materials, Polish Academy of Sciences, 34. M. Curie-Skłodowska St., 41-819 Zabrze, Poland
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16
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Miao J, Zhu Y, Li W, Che R, Zong X, Li J, Wang F, Wu Y, Fu H. Reductive soil disinfestation influences microbial aging of low-density polyethylene and polyhydroxyalkanoate microplastics and microbial communities in plastispheres. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 372:123331. [PMID: 39586172 DOI: 10.1016/j.jenvman.2024.123331] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2024] [Revised: 10/27/2024] [Accepted: 11/09/2024] [Indexed: 11/27/2024]
Abstract
The extensive use of plastic products has led to the accumulation of microplastics (MPs) in agricultural soils, raising concerns about their fate in various environments. Reductive soil disinfestation (RSD) treatment is increasingly being adopted in various countries to address agricultural soil health issues. However, the treatment can alter the soil microbial environment, potentially affecting the fate of contaminants, including MPs. The effect of RSD on the aging of low-density polyethylene (LDPE) and polyhydroxyalkanoates (PHA) MPs was studied through an incubation experiment. The mechanism involved was further investigated by microbial community analysis. The characterization results shown that RSD treatment inhibited the aging of LDPE but promoted the aging of PHA. The results indicated that RSD reshaped the microbial community and reduced the relative abundance of lipid metabolism in the LDPE plastisphere, thereby hindering LDPE aging. Predicted functional genes in the plastispheres were primarily involved in metabolism (77.15-87.48%) and genetic information processing (8.774-12.62%). The enrichment of bacteria related to poly(3-hydroxybutyrate) depolymerase (phaZ) in the PHA plastisphere explained the higher aging degree of PHA during RSD. Some fungus also involved in the MPs aging, while some fungus pathogens can proliferate in the MPs plastispheres. The 3DEEM analysis indicated that PHA MPs aging increased tyrosine-like substances in soil extracts. These findings provide new insights into the ecological implications of RSD and enhance our understanding of microbial communities within plastispheres.
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Affiliation(s)
- Jiahe Miao
- Key Laboratory of Environmental Biotechnology (XMUT), Fujian Province University, Xiamen University of Technology, Xiamen, 361024, China; Fujian Engineering and Research Center of Rural Sewage Treatment and Water Safety, Xiamen University of Technology, Xiamen, 361024, China
| | - Yining Zhu
- School of Chemistry and Chemical Engineering, Nanjing University of Science and Technology, Nanjing, 210094, China; School of Environment, Nanjing Normal University, Nanjing, 210023, China
| | - Wen Li
- School of Environment, Nanjing Normal University, Nanjing, 210023, China
| | - Ruijie Che
- School of Chemistry and Chemical Engineering, Nanjing University of Science and Technology, Nanjing, 210094, China; School of Environment, Nanjing Normal University, Nanjing, 210023, China
| | - Xinyan Zong
- School of Environment, Nanjing Normal University, Nanjing, 210023, China
| | - Jining Li
- School of Environment, Nanjing Normal University, Nanjing, 210023, China
| | - Fenghe Wang
- School of Chemistry and Chemical Engineering, Nanjing University of Science and Technology, Nanjing, 210094, China.
| | - Yicheng Wu
- Key Laboratory of Environmental Biotechnology (XMUT), Fujian Province University, Xiamen University of Technology, Xiamen, 361024, China; Fujian Engineering and Research Center of Rural Sewage Treatment and Water Safety, Xiamen University of Technology, Xiamen, 361024, China
| | - Haiyan Fu
- Key Laboratory of Environmental Biotechnology (XMUT), Fujian Province University, Xiamen University of Technology, Xiamen, 361024, China; Fujian Engineering and Research Center of Rural Sewage Treatment and Water Safety, Xiamen University of Technology, Xiamen, 361024, China
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17
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Miura T, Miyakawa T, Kusuya Y, Kamino K. Complete genome sequencing of four marine bacteria, Gilvimarinus japonicus NBRC 111987 T, Halioxenophilus aromaticivorans JCM 19134 T, Maricurvus nonylphenolicus JCM 17778 T, and Simiduia litorea JCM 19759 T belonging to the family Cellvibrionaceae. Microbiol Resour Announc 2024; 13:e0087324. [PMID: 39400139 PMCID: PMC11555993 DOI: 10.1128/mra.00873-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2024] [Accepted: 09/20/2024] [Indexed: 10/15/2024] Open
Abstract
We report on the complete genomes of Gilvimarinus japonicus NBRC 111987T, Halioxenophilus aromaticivorans JCM 19134T, Maricurvus nonylphenolicus JCM 17778T, and Simiduia litorea JCM 19759T, isolated from the sea. Strains JCM 19134T, JCM 17778T, and JCM 19759T contain genes predicted to be polyhydroxyalkanoate-degrading enzymes.
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Affiliation(s)
- Takamasa Miura
- Biological Resource Center, National Institute of Technology and Evaluation (NBRC), Chiba, Japan
| | - Tomoyo Miyakawa
- Biological Resource Center, National Institute of Technology and Evaluation (NBRC), Chiba, Japan
| | - Yoko Kusuya
- Biological Resource Center, National Institute of Technology and Evaluation (NBRC), Chiba, Japan
| | - Kei Kamino
- Biological Resource Center, National Institute of Technology and Evaluation (NBRC), Chiba, Japan
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18
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Jaiboon K, Chouwatat P, Napathorn SC. Valorization of biodiesel-derived crude glycerol for simultaneous biosynthesis of biodegradable polyhydroxybutyrate and exopolysaccharide by the newly isolated Burkholderia sp. SCN-KJ. Int J Biol Macromol 2024; 281:136556. [PMID: 39406327 DOI: 10.1016/j.ijbiomac.2024.136556] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2024] [Revised: 09/29/2024] [Accepted: 10/11/2024] [Indexed: 10/20/2024]
Abstract
This study demonstrated that Burkholderia sp. SCN-KJ is a promising novel species for the biovalorization of crude glycerol to polyhydroxybutyrate (PHB) and galactose-rich heteroexopolysaccharide (EPS). Whole-genome and genetic evolution analyses revealed separation of the different clades according to the ANIb and dDDH analyses, which confirmed that Burkholderia sp. SCN-KJ is a novel species. The highest PHB production from crude glycerol was 12.9 ± 0.4 g/L (72.9 ± 2.1 % w/w), with a productivity of 0.46 g/L/h and YP/S of 0.3 g/g at 28 h in a 10 L fermenter. The galactose-rich hetero-EPS began to be produced after nitrogen depletion, resulting in a concentration of 22.4 ± 0.2 g/L at 38 h. Examination of the carbon-to‑nitrogen ratio (C/N) showed that nitrogen-rich condition (C/N 20) was optimal for PHB production, whereas nitrogen-depleted condition promoted EPS production, showing two different extrema. The findings showed that Burkholderia sp. SCN-KJ has the potential to transform the landscape of biovalorization for sustainable production.
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Affiliation(s)
- Kanokjun Jaiboon
- Biotechnology Program, Faculty of Science, Chulalongkorn University, Pathumwan, Bangkok 10330, Thailand.
| | - Patcharida Chouwatat
- Bangchak Corporation Public Company Limited, M Tower Building, 8(th) Floor, Sukhumvit Rd, Phra Khanong, Bangkok 10260, Thailand.
| | - Suchada Chanprateep Napathorn
- Biotechnology Program, Faculty of Science, Chulalongkorn University, Pathumwan, Bangkok 10330, Thailand; Department of Microbiology, Faculty of Science, Chulalongkorn University, Pathumwan, Bangkok 10330, Thailand; International Center for Biotechnology, Osaka University, 2-1 Yamadaoka, Suita, Osaka 565-0871, Japan.
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19
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Kawakami T, Tomita H, Hien PT, Matsumoto K. Biosynthesis of High Toughness Poly(3-Hydroxypropionate)-Based Block Copolymers With Poly(D-2-Hydroxybutyrate) and Poly(D-Lactate) Segments Using Evolved Monomer Sequence-Regulating Polyester Synthase. Biopolymers 2024; 115:e23618. [PMID: 39162134 PMCID: PMC11579217 DOI: 10.1002/bip.23618] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2024] [Revised: 07/15/2024] [Accepted: 07/17/2024] [Indexed: 08/21/2024]
Abstract
This study synthesized poly(3-hydroxypropionate) [P(3HP)]-containing polyhydroxyalkanoate (PHA) block copolymers, P(3HP)-b-P[2-hydroxybutyrate (2HB)] and P(3HP)-b-P(D-lactate) (PDLA), using Escherichia coli. The cells expressing an evolved sequence-regulating PHA synthase, PhaCARNDFH, and propionyl-CoA transferase were cultured with the supplementation of the corresponding monomer precursors in the medium. The block structure of P(3HP)-b-PDLA was confirmed by proton nuclear magnetic resonance analysis and solvent fractionation. The molecular weights of the polymers were in the range of 0.8-2.8 × 105. The solvent-cast polymer films were subjected to isothermal treatment to promote phase separation and crystallization and were subsequently melt-quenched to produce an amorphous phase. The melt-quenched P(3HP)-b-P(2HB) film exhibited a high elongation at break (1153%), resulting in a toughness of 181 MJ/m3. The solvent-cast film of P(3HP)-b-65 mol% PDLA exhibited partial elastic deformation, in which the P(3HP) phase functioned as a soft segment. The melt-quenching of the polymer resulted in embrittlement presumably due to the high lactate fraction. Overall, the P(3HP)-based block copolymers exhibited several mechanical properties depending on the higher-order structure of the polymer and the properties of the P(2-hydroxyalkanoate) segments. This study findings show that P(3HP)-b-P(2HB) and P(3HP)-b-PDLA can function excellently if their microstructures are properly controlled.
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Affiliation(s)
- Tomoya Kawakami
- Graduate School of Chemical Sciences and EngineeringHokkaido UniversitySapporoJapan
| | - Hiroya Tomita
- Division of Applied Chemistry, Faculty of EngineeringHokkaido UniversitySapporoJapan
| | - Phan Thi Hien
- Graduate School of Chemical Sciences and EngineeringHokkaido UniversitySapporoJapan
| | - Ken'ichiro Matsumoto
- Division of Applied Chemistry, Faculty of EngineeringHokkaido UniversitySapporoJapan
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Hino S, Masui A, Okamura H, Kawasaki N, Yamano N, Nakayama A. Porphyrin as Photosensitizers for Controlling Marine Biodegradation of Polymer Composites. Biomacromolecules 2024; 25:6395-6402. [PMID: 39213605 DOI: 10.1021/acs.biomac.4c00219] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/04/2024]
Abstract
Biodegradable polymer-photosensitizer composites were developed, which is suppressed biodegradation due to bactericidal activity under light irradiation but proceeds under dark conditions. The composites exhibited antibacterial activity under light irradiation, which was attributed to the generation of singlet oxygen (1O2). Biodegradation was evaluated in seawater using the biochemical oxygen demand (BOD) method. In the dark, the composite and base polymer biodegraded to a similar degree. However, under light irradiation, the biodegradation of the composite was suppressed. In field tests, the rate of volume reduction of the composites decreased under illumination. The main cause of the suppression of biodegradation is suggested to be due to the decrease in the number of bacteria on the surface of the material and the inactivation of exoenzymes. The findings are expected to contribute to the development of biodegradable polymers that do not biodegrade during use but only when disposed of in the environment, thereby achieving on-demand degradation.
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Affiliation(s)
- Shodai Hino
- Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 1-8-31 Midorigaoka, Ikeda, Osaka563-8577, Japan
| | - Akihiko Masui
- Osaka Research Institute of Industrial Science and Technology (ORIST), Izumi Center, 7-1 Ayumino-2, Izumi ,Osaka594-1157, Japan
| | - Hideo Okamura
- Research Center for Inland Seas (KURCIS), Kobe University, 5-1-1 Fukaeminami, Higashinada, Kobe, Hyogo 658-0022, Japan
- International Maritime Research Center (IMaRC), Kobe University, 5-1-1 Fukaeminami, Higashinada, Kobe, Hyogo 658-0022, Japan
| | - Norioki Kawasaki
- Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 1-8-31 Midorigaoka, Ikeda, Osaka563-8577, Japan
| | - Naoko Yamano
- Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 1-8-31 Midorigaoka, Ikeda, Osaka563-8577, Japan
| | - Atsuyoshi Nakayama
- Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 1-8-31 Midorigaoka, Ikeda, Osaka563-8577, Japan
- International Maritime Research Center (IMaRC), Kobe University, 5-1-1 Fukaeminami, Higashinada, Kobe, Hyogo 658-0022, Japan
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21
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Venu Gopala Kumari S, Pakshirajan K, Pugazhenthi G. Key insights into mechanism and kinetics of biodegradation of poly (3-hydroxybutyrate)-based nanocomposite films in natural soil and river water environments. BIORESOURCE TECHNOLOGY 2024; 409:131238. [PMID: 39122131 DOI: 10.1016/j.biortech.2024.131238] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Revised: 07/23/2024] [Accepted: 08/06/2024] [Indexed: 08/12/2024]
Abstract
The biodegradability of poly (3-hydroxybutyrate) (PHB)-based food packaging material PHB/5GS/0.7MgO, developed by incorporating 5 wt% grapeseed oil (GS) and 0.7 wt% MgO nanoparticles using solution casting route, was investigated in soil and river water environments. For comparison, the biodegradability of neat PHB films and PHB-based films loaded only with 5 wt% GS (PHB/5GS) was also studied. Remarkably, all PHB-based films showed 100 % weight loss in soil within 25 days. In contrast, the weight loss of PHB, PHB/5GS, and PHB/5GS/MgO films in river water was 27, 24, and 20 %, respectively, in 120 days. Gradual reduction in average molecular weight and carbonyl index, alongside an increase in crystallinity, opacity, and the number of chain scissions per unit mass, was observed for various PHB-based films during their degradation in soil and river water. Overall, this study demonstrated high degradation efficiency of PHB-based food packaging material in soil than in river water.
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Affiliation(s)
- Satti Venu Gopala Kumari
- Department of Chemical Engineering, Indian Institute of Technology Guwahati, Guwahati 781039, Assam, India
| | - Kannan Pakshirajan
- Departmentof Biosciences and Bioengineering, Indian Institute of Technology Guwahati, Guwahati 781039, Assam, India
| | - G Pugazhenthi
- Department of Chemical Engineering, Indian Institute of Technology Guwahati, Guwahati 781039, Assam, India; Centre for Sustainable Polymers, Indian Institute of Technology Guwahati, Guwahati 781039, Assam, India.
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22
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González-Arancibia F, Mamani M, Valdés C, Contreras-Matté C, Pérez E, Aguilera J, Rojas V, Ramirez-Malule H, Andler R. Biopolymers as Sustainable and Active Packaging Materials: Fundamentals and Mechanisms of Antifungal Activities. Biomolecules 2024; 14:1224. [PMID: 39456157 PMCID: PMC11506644 DOI: 10.3390/biom14101224] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2024] [Revised: 09/23/2024] [Accepted: 09/24/2024] [Indexed: 10/28/2024] Open
Abstract
Developing bio-based and biodegradable materials has become important to meet current market demands, government regulations, and environmental concerns. The packaging industry, particularly for food and beverages, is known to be the world's largest consumer of plastics. Therefore, the demand for sustainable alternatives in this area is needed to meet the industry's requirements. This review presents the most commonly used bio-based and biodegradable packaging materials, bio-polyesters, and polysaccharide-based polymers. At the same time, a major problem in food packaging is presented: fungal growth and, consequently, food spoilage. Different types of antifungal compounds, both natural and synthetic, are explained in terms of structure and mechanism of action. The main uses of these antifungal compounds and their degree of effectiveness are detailed. State-of-the-art studies have shown a clear trend of increasing studies on incorporating antifungals in biodegradable materials since 2000. The bibliometric networks showed studies on active packaging, biodegradable polymers, films, antimicrobial and antifungal activities, essential oils, starch and polysaccharides, nanocomposites, and nanoparticles. The combination of the development of bio-based and biodegradable materials with the ability to control fungal growth promotes both sustainability and the innovative enhancement of the packaging sector.
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Affiliation(s)
- Fernanda González-Arancibia
- Escuela de Ingeniería en Biotecnología, Centro de Biotecnología de los Recursos Naturales (Cenbio), Universidad Católica del Maule, Talca 3460000, Chile
| | - Maribel Mamani
- Laboratorio de Bioprocesos, Centro de Biotecnología de los Recursos Naturales (Cenbio), Universidad Católica del Maule, Talca 3460000, Chile
| | - Cristian Valdés
- Centro de Investigación de Estudios Avanzados del Maule (CIEAM), Vicerrectoría de Investigación y Postgrado, Universidad Católica del Maule, Talca 3460000, Chile;
| | - Caterina Contreras-Matté
- Programa de Doctorado en Psicología, Facultad de Ciencias de la Salud, Universidad Católica del Maule, Talca 3460000, Chile
| | - Eric Pérez
- Escuela de Ingeniería en Biotecnología, Centro de Biotecnología de los Recursos Naturales (Cenbio), Universidad Católica del Maule, Talca 3460000, Chile
| | - Javier Aguilera
- Escuela de Ingeniería en Biotecnología, Centro de Biotecnología de los Recursos Naturales (Cenbio), Universidad Católica del Maule, Talca 3460000, Chile
| | - Victoria Rojas
- Escuela de Ingeniería en Biotecnología, Centro de Biotecnología de los Recursos Naturales (Cenbio), Universidad Católica del Maule, Talca 3460000, Chile
| | | | - Rodrigo Andler
- Escuela de Ingeniería en Biotecnología, Centro de Biotecnología de los Recursos Naturales (Cenbio), Universidad Católica del Maule, Talca 3460000, Chile
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Sathiaseelan JJ, Afifah NMR, Abdullah AAA, Ramakrishna S, Vigneswari S, Bhubalan K. Exploring the advantages and limitations of degradation for various biodegradable micro-bioplastic in aquatic environments. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 366:121777. [PMID: 39018857 DOI: 10.1016/j.jenvman.2024.121777] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2023] [Revised: 04/28/2024] [Accepted: 07/05/2024] [Indexed: 07/19/2024]
Abstract
Biodegradable plastics are being the substitute for synthetic plastics and widely been used in order to combat plastic pollution. Yet not all biodegradable plastics are degradable especially when it does not meet its favourable conditions, and also when it comes to aquatic environments. Therefore, this review is intended to highlight the types of various biodegradable plastic synthesized and commercialised and identify the limitations and advantages of these micro-bioplastics or residual bioplastic upon degradation in various aquatic environments. This review paper highlights on biodegradable plastic, degradation of biodegradable plastic in aquatic environments, application of biodegradable plastic, polylactic acid (PLA), Polyhydroxyalkanoates (PHA), Polysaccharide derivatives, Poly (amino acid), polycaprolactone (PCL), polybutylene succinate (PBS), polybutylene adipate terephthalate (PBA/T), limitations and advantages of biodegradable plastic degradation in aquatic environment. There is no limit on the period for literature search as this field is continuously being studied and there is no wide range of studies. Biodegradable plastic that is commercially available has its own advantages and limitations respectively upon degradation in both freshwater and marine environments. There is a growing demand for bioplastic as an alternative to synthetic plastic which causes plastic waste pollution. Thus, it is crucial to understand the biodegradation of biodegradable plastic in depth especially in aquatic environments. Moreover, there are also very few studies investigating the degradation and migration of micro-bioplastics in aquatic environments.
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Affiliation(s)
| | - Nurul Mohd Ridzuan Afifah
- Faculty of Science and Marine Environment, Universiti Malaysia Terengganu, Kuala Nerus, Terengganu, Malaysia
| | - Amirul Al-Ashraf Abdullah
- School of Biological Science, Universiti Sains Malaysia, Pulau Pinang, Malaysia; Centre for Chemical Biology, Universiti Sains Malaysia, Bayan Lepas, Penang, Malaysia
| | - Seeram Ramakrishna
- Center for Nanotechnology and Sustainability, National University of Singapore, 119260, Singapore
| | - Sevakumaran Vigneswari
- Institute of Climate Adaptation and Marine Biotechnology, Universiti Malaysia Terengganu, Kuala Nerus, Terengganu, Malaysia
| | - Kesaven Bhubalan
- Faculty of Science and Marine Environment, Universiti Malaysia Terengganu, Kuala Nerus, Terengganu, Malaysia; Institute of Climate Adaptation and Marine Biotechnology, Universiti Malaysia Terengganu, Kuala Nerus, Terengganu, Malaysia.
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24
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Yee Foong Ng L, Ariffin H, Tengku Yasim-Anuar TA, Sakata M, Kawarada T, Yoshimura O, Tsukegi T, Afizan Nik Abd Rahman NM, Hassan MA. Nucleating and reinforcing effects of nanobiochar on poly(3-hydroxybutyrate- co-3-hydroxhexanoate) bionanocomposites. RSC Adv 2024; 14:21971-21981. [PMID: 39006768 PMCID: PMC11240217 DOI: 10.1039/d3ra08721b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Accepted: 04/25/2024] [Indexed: 07/16/2024] Open
Abstract
This study promotes the use of nanobiochar (NBC) as an environmentally friendly substitute to conventional fillers to improve various properties of biopolymers such as their mechanical strength, thermal stability and crystallization properties. TGA analysis showed a slight increase in onset thermal degradation temperature of the composites by up to 5 °C with the addition of 4 wt% NBC. Non-isothermal DSC analysis determined that the addition of NBC into PHBHHx increases the crystallization temperature and degree of crystallinity of PHBHHx while isothermal DSC analysis demonstrated higher crystallization rate in PHBHHx/NBC composited by up to 54%. PHBHHx incorporated with NBC also exhibited superior tensile strength and modulus versus neat PHBHHx. Increase in mechanical strength was further proven via DMA where PHBHHx/NBC composites maintained higher storage modulus at higher temperatures when compared to neat PHBHHx. PHBHHx/NBC also exhibited no cytotoxicity effect against HaCat cells. This study demonstrates the ability of biochar to act as both nucleating agents and reinforcing agents in biodegradable polymers such as PHBHHx, which could be suitable for packaging application.
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Affiliation(s)
- Lawrence Yee Foong Ng
- Laboratory of Biopolymers and Derivatives, Institute of Tropical Forestry and Forest Products (INTROP), Universiti Putra Malaysia 43400 UPM Serdang Selangor Malaysia
| | - Hidayah Ariffin
- Laboratory of Biopolymers and Derivatives, Institute of Tropical Forestry and Forest Products (INTROP), Universiti Putra Malaysia 43400 UPM Serdang Selangor Malaysia
- Department of Bioprocess Technology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia 43400 UPM Serdang Selangor Malaysia
| | - Tengku Arisyah Tengku Yasim-Anuar
- Department of Bioprocess Technology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia 43400 UPM Serdang Selangor Malaysia
- Nextgreen Pulp & Paper Sdn. Bhd., Green Technology Park Paloh Inai 26600 Pekan Pahang Malaysia
| | - Megumi Sakata
- Department of Applied Chemistry, Faculty of Biotechnology and Chemistry, Kanazawa Institute of Technology 7-1 Ohgigaoka Nonoichi Ishikawa 921-8501 Japan
| | - Tomoya Kawarada
- Department of Applied Chemistry, Faculty of Biotechnology and Chemistry, Kanazawa Institute of Technology 7-1 Ohgigaoka Nonoichi Ishikawa 921-8501 Japan
| | - Osamu Yoshimura
- Department of Applied Chemistry, Faculty of Biotechnology and Chemistry, Kanazawa Institute of Technology 7-1 Ohgigaoka Nonoichi Ishikawa 921-8501 Japan
| | - Takayuki Tsukegi
- Department of Applied Chemistry, Faculty of Biotechnology and Chemistry, Kanazawa Institute of Technology 7-1 Ohgigaoka Nonoichi Ishikawa 921-8501 Japan
| | - Nik Mohd Afizan Nik Abd Rahman
- Laboratory of Biopolymers and Derivatives, Institute of Tropical Forestry and Forest Products (INTROP), Universiti Putra Malaysia 43400 UPM Serdang Selangor Malaysia
- Department of Cell and Molecular Biology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia 43400 UPM Serdang Selangor Malaysia
| | - Mohd Ali Hassan
- Department of Bioprocess Technology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia 43400 UPM Serdang Selangor Malaysia
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25
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Palenzuela M, Mula E, Blanco C, Sessini V, Shakaroun RM, Li H, Guillaume SM, Mosquera MEG. Copolymerization of β-Butyrolactones into Functionalized Polyhydroxyalkanoates Using Aluminum Catalysts: Influence of the Initiator in the Ring-Opening Polymerization Mechanism. Macromol Rapid Commun 2024; 45:e2400091. [PMID: 38690992 DOI: 10.1002/marc.202400091] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2024] [Revised: 04/22/2024] [Indexed: 05/03/2024]
Abstract
Within bioplastics, natural poly(3-hydroxybutyrate) (PHB) stands out as fully biocompatible and biodegradable, even in marine environments; however, its high isotacticity and crystallinity limits its mechanical properties and hence its applications. PHB can also be synthesized with different tacticities via a catalytic ring-opening polymerization (ROP) of rac-β-butyrolactone (BBL), paving the way to PHB with better thermomechanical and processability properties. In this work, the catalyst family is extended based on aluminum phenoxy-imine methyl catalyst [AlMeL2], that reveals efficient in the ROP of BBL, to the halogeno analogous complex [AlClL2]. As well, the impact on the ROP mechanism of different initiators is further explored with a particular focus in dimethylaminopyridine (DMAP), a hardly studied initiator for the ROP of BBL. A thorough mechanistic study is performed that evidences the presence of two concomitant DMAP-mediated mechanisms, that lead to either a DMAP or a crotonate end-capping group. Besides, in order to increase the possibilities of PHB post-polymerization functionalization, the introduction of a side-chain functionality is explored, establishing the copolymerization of BBL with β-allyloxymethylene propiolactone (BPLOAll), resulting in well-defined P(BBL-co-BPLOAll) copolymers.
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Affiliation(s)
- Miguel Palenzuela
- Departamento de Química Orgánica y Química Inorgánica, Instituto de Investigación en Química "Andrés M. del Río" (IQAR), Universidad de Alcalá, Campus Universitario, Alcalá de Henares, Madrid, 28871, Spain
| | - Esther Mula
- Departamento de Química Orgánica y Química Inorgánica, Instituto de Investigación en Química "Andrés M. del Río" (IQAR), Universidad de Alcalá, Campus Universitario, Alcalá de Henares, Madrid, 28871, Spain
| | - Carlos Blanco
- Departamento de Química Orgánica y Química Inorgánica, Instituto de Investigación en Química "Andrés M. del Río" (IQAR), Universidad de Alcalá, Campus Universitario, Alcalá de Henares, Madrid, 28871, Spain
| | - Valentina Sessini
- Departamento de Química Orgánica y Química Inorgánica, Instituto de Investigación en Química "Andrés M. del Río" (IQAR), Universidad de Alcalá, Campus Universitario, Alcalá de Henares, Madrid, 28871, Spain
| | - Rama M Shakaroun
- Univ. Rennes, CNRS, Institut des Sciences Chimiques de Rennes, UMR 6226, Rennes, F-35042, France
| | - Hui Li
- Univ. Rennes, CNRS, Institut des Sciences Chimiques de Rennes, UMR 6226, Rennes, F-35042, France
| | - Sophie M Guillaume
- Univ. Rennes, CNRS, Institut des Sciences Chimiques de Rennes, UMR 6226, Rennes, F-35042, France
| | - Marta E G Mosquera
- Departamento de Química Orgánica y Química Inorgánica, Instituto de Investigación en Química "Andrés M. del Río" (IQAR), Universidad de Alcalá, Campus Universitario, Alcalá de Henares, Madrid, 28871, Spain
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26
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Guo H, Mi P. Polymer-drug and polymer-protein conjugated nanocarriers: Design, drug delivery, imaging, therapy, and clinical applications. WILEY INTERDISCIPLINARY REVIEWS. NANOMEDICINE AND NANOBIOTECHNOLOGY 2024; 16:e1988. [PMID: 39109479 DOI: 10.1002/wnan.1988] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2024] [Revised: 07/22/2024] [Accepted: 07/23/2024] [Indexed: 01/06/2025]
Abstract
Polymer-drug conjugates and polymer-protein conjugates have been pivotal in the realm of drug delivery systems for over half a century. These polymeric drugs are characterized by the conjugation of therapeutic molecules or functional moieties to polymers, enabling a range of benefits including extended circulation times, targeted delivery, controlled release, and decreased immunogenicity. This review delves into recent advancements and challenges in the clinical translations and preclinical studies of polymer-drug conjugates and polymer-protein conjugates. The design principles and functionalization strategies crucial for the development of these polymeric drugs were explored followed by the review of structural properties and characteristics of various polymer carriers. This review also identifies significant obstacles in the clinical translation of polymer-drug conjugates and provides insights into the directions for their future development. This article is categorized under: Therapeutic Approaches and Drug Discovery > Nanomedicine for Oncologic Disease.
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Affiliation(s)
- Haochen Guo
- Department of Radiology, Huaxi MR Research Center (HMRRC), and State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu, China
- Innovation Center of Nanomedicine (iCONM), Kawasaki Institute of Industrial Promotion, Kawasaki, Japan
| | - Peng Mi
- Department of Radiology, Huaxi MR Research Center (HMRRC), and State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu, China
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27
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Kim DW, Lim ES, Lee GH, Son HF, Sung C, Jung JH, Park HJ, Gong G, Ko JK, Um Y, Han SO, Ahn JH. Biodegradation of oxidized low density polyethylene by Pelosinus fermentans lipase. BIORESOURCE TECHNOLOGY 2024; 403:130871. [PMID: 38782190 DOI: 10.1016/j.biortech.2024.130871] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2024] [Revised: 04/28/2024] [Accepted: 05/20/2024] [Indexed: 05/25/2024]
Abstract
Polyethylene (PE) exhibits high resistance to degradation, contributing to plastic pollution. PE discarded into the environment is photo-oxidized by sunlight and oxygen. In this study, a key enzyme capable of degrading oxidized PE is reported for the first time. Twenty different enzymes from various lipase families were evaluated for hydrolytic activity using substrates mimicking oxidized PE. Among them, Pelosinus fermentans lipase 1 (PFL1) specifically cleaved the ester bonds within the oxidized carbon-carbon backbone. Moreover, PFL1 (6 μM) degraded oxidized PE film, reducing the weight average and number average molecular weights by 44.6 and 11.3 %, respectively, within five days. Finally, structural analysis and molecular docking simulations were performed to elucidate the degradation mechanism of PFL1. The oxidized PE-degrading enzyme reported here will provide the groundwork for advancing PE waste treatment technology and for engineering microbes to repurpose PE waste into valuable chemicals.
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Affiliation(s)
- Do-Wook Kim
- Clean Energy Research Center, Korea Institute of Science and Technology, Seoul 02792, Republic of Korea
| | - Eui Seok Lim
- Clean Energy Research Center, Korea Institute of Science and Technology, Seoul 02792, Republic of Korea; Department of Biotechnology, Korea University, Seoul 02841, Republic of Korea
| | - Ga Hyun Lee
- Clean Energy Research Center, Korea Institute of Science and Technology, Seoul 02792, Republic of Korea; Department of Biotechnology, Korea University, Seoul 02841, Republic of Korea
| | - Hyeoncheol Francis Son
- Clean Energy Research Center, Korea Institute of Science and Technology, Seoul 02792, Republic of Korea
| | - Changmin Sung
- Doping Control Center, Korea Institute of Science and Technology, Seoul 02792, Republic of Korea
| | - Jong-Hyun Jung
- Radiation Biotechnology Division, Korea Atomic Energy Research Institute, Jeongeup 56212, Republic of Korea
| | - Hyun June Park
- Department of Biotechnology, Duksung Women's University, Seoul 01369, Republic of Korea
| | - Gyeongtaek Gong
- Clean Energy Research Center, Korea Institute of Science and Technology, Seoul 02792, Republic of Korea; Division of Energy and Environment Technology, KIST School, University of Science and Technology (UST), Daejeon 34113, Republic of Korea
| | - Ja Kyong Ko
- Clean Energy Research Center, Korea Institute of Science and Technology, Seoul 02792, Republic of Korea; Division of Energy and Environment Technology, KIST School, University of Science and Technology (UST), Daejeon 34113, Republic of Korea
| | - Youngsoon Um
- Clean Energy Research Center, Korea Institute of Science and Technology, Seoul 02792, Republic of Korea; Division of Energy and Environment Technology, KIST School, University of Science and Technology (UST), Daejeon 34113, Republic of Korea
| | - Sung Ok Han
- Department of Biotechnology, Korea University, Seoul 02841, Republic of Korea
| | - Jung Ho Ahn
- Clean Energy Research Center, Korea Institute of Science and Technology, Seoul 02792, Republic of Korea; Division of Energy and Environment Technology, KIST School, University of Science and Technology (UST), Daejeon 34113, Republic of Korea.
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28
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Read T, Chan CM, Chaléat C, Laycock B, Pratt S, Lant P. The effect of additives on the biodegradation of polyhydroxyalkanoate (PHA) in marine field trials. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 931:172771. [PMID: 38670377 DOI: 10.1016/j.scitotenv.2024.172771] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Revised: 03/12/2024] [Accepted: 04/23/2024] [Indexed: 04/28/2024]
Abstract
The persistence of conventional fossil fuel-derived plastics in marine ecosystems has raised significant environmental concerns. Biodegradable plastics are being explored as an alternative. This study investigates the biodegradation behaviour in two marine environments of melt-extruded sheets of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV) bioplastic as well as blends of PHBV with a non-toxic plasticiser (triethyl citrate, TEC) and composites of PHBV with wood flour. Samples were submerged for up to 35 weeks in two subtropical marine conditions: on the sandy seabed in the sublittoral benthic zone and the sandy seabed of an open air mesocosm with pumped seawater. Rates of biodegradation, lag times and times to 95 % mass loss (T95) were determined through mass loss data and Gompertz modelling. Mechanisms of biodegradation were studied through changes in molecular weight, mechanical properties and surface features. Results reveal a rapid biodegradation rate for all PHBV samples, demonstrating a range of specific biodegradation rates relative to exposed surface area of 0.03 ± 0.01 to 0.09 ± 0.04 mg.d-1.cm-2. This rapid rate of biodegradation meant that the subtle variations in biodegradation mechanisms across different sample thicknesses and additive compositions had little effect on overall lifetimes, with the T95 for most samples being around 250-350 days, regardless of site, highlighting the robust biodegradability of PHBV in seawater. It was only the PHBV-wood flour composite that showed faster biodegradation, and that was only in the exposed ocean site. The mesocosm site was otherwise shown to be a good model for the open ocean, with very comparable biodegradation rates and changes in mechanical properties over time.
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Affiliation(s)
- Tracey Read
- School of Chemical Engineering, The University of Queensland, St Lucia, Brisbane, Queensland 4072, Australia
| | - Clement Matthew Chan
- School of Chemical Engineering, The University of Queensland, St Lucia, Brisbane, Queensland 4072, Australia
| | - Céline Chaléat
- School of Chemical Engineering, The University of Queensland, St Lucia, Brisbane, Queensland 4072, Australia
| | - Bronwyn Laycock
- School of Chemical Engineering, The University of Queensland, St Lucia, Brisbane, Queensland 4072, Australia.
| | - Steven Pratt
- School of Chemical Engineering, The University of Queensland, St Lucia, Brisbane, Queensland 4072, Australia
| | - Paul Lant
- School of Chemical Engineering, The University of Queensland, St Lucia, Brisbane, Queensland 4072, Australia
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29
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An Y, Padermshoke A, Van Nguyen T, Takahara A. Surface Chemistry in Environmental Degradation of Polymeric Solids. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2024; 40:9336-9344. [PMID: 38669192 DOI: 10.1021/acs.langmuir.4c00731] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/28/2024]
Abstract
Microplastics (MPs) cause significant adverse environmental effects. To address this issue, a scientific approach for understanding the formation of MPs is essential. In this Perspective, we summarize the three typical degradation behaviors of polymeric solids from a surface chemistry perspective: chemical degradation, biodegradation, and mechanical degradation. These three degradation processes can occur consecutively or simultaneously in poorly managed polymeric materials, ultimately resulting in their disintegration into the environment. This Perspective provides valuable insights into controlling the degradation of polymeric solids and designing eco-friendly polymers for a sustainable future.
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Affiliation(s)
- Yingjun An
- Research Center for Negative Emission Technologies, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Adchara Padermshoke
- Research Center for Negative Emission Technologies, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Thinh Van Nguyen
- Research Center for Negative Emission Technologies, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Atsushi Takahara
- Research Center for Negative Emission Technologies, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
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30
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Van Den Berghe M, Walworth NG, Dalvie NC, Dupont CL, Springer M, Andrews MG, Romaniello SJ, Hutchins DA, Montserrat F, Silver PA, Nealson KH. Microbial Catalysis for CO 2 Sequestration: A Geobiological Approach. Cold Spring Harb Perspect Biol 2024; 16:a041673. [PMID: 37788887 PMCID: PMC11065169 DOI: 10.1101/cshperspect.a041673] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/05/2023]
Abstract
One of the greatest threats facing the planet is the continued increase in excess greenhouse gasses, with CO2 being the primary driver due to its rapid increase in only a century. Excess CO2 is exacerbating known climate tipping points that will have cascading local and global effects including loss of biodiversity, global warming, and climate migration. However, global reduction of CO2 emissions is not enough. Carbon dioxide removal (CDR) will also be needed to avoid the catastrophic effects of global warming. Although the drawdown and storage of CO2 occur naturally via the coupling of the silicate and carbonate cycles, they operate over geological timescales (thousands of years). Here, we suggest that microbes can be used to accelerate this process, perhaps by orders of magnitude, while simultaneously producing potentially valuable by-products. This could provide both a sustainable pathway for global drawdown of CO2 and an environmentally benign biosynthesis of materials. We discuss several different approaches, all of which involve enhancing the rate of silicate weathering. We use the silicate mineral olivine as a case study because of its favorable weathering properties, global abundance, and growing interest in CDR applications. Extensive research is needed to determine both the upper limit of the rate of silicate dissolution and its potential to economically scale to draw down significant amounts (Mt/Gt) of CO2 Other industrial processes have successfully cultivated microbial consortia to provide valuable services at scale (e.g., wastewater treatment, anaerobic digestion, fermentation), and we argue that similar economies of scale could be achieved from this research.
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Affiliation(s)
| | - Nathan G Walworth
- Vesta, San Francisco, California 94114, USA
- University of Southern California, Los Angeles, California 90007, USA
- Department of Environment and Sustainability, J. Craig Venter Institute, La Jolla, California 92037, USA
| | - Neil C Dalvie
- Department of Systems Biology, Harvard Medical School, Boston, Massachusetts 02115, USA
| | - Chris L Dupont
- Department of Environment and Sustainability, J. Craig Venter Institute, La Jolla, California 92037, USA
- Department of Human Biology and Genomic Medicine, J. Craig Venter Institute, La Jolla, California 92037, USA
| | - Michael Springer
- Department of Systems Biology, Harvard Medical School, Boston, Massachusetts 02115, USA
| | | | | | - David A Hutchins
- University of Southern California, Los Angeles, California 90007, USA
| | | | - Pamela A Silver
- Department of Systems Biology, Harvard Medical School, Boston, Massachusetts 02115, USA
| | - Kenneth H Nealson
- Vesta, San Francisco, California 94114, USA
- University of Southern California, Los Angeles, California 90007, USA
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Chai YJ, Syauqi TA, Sudesh K, Ee TL, Ban CC, Kar Mun AC, Anne Strain EM, Merican F, Rahim MA, Md Salleh K, Yin CS. Effects of poly(3-hydroxybutyrate) [P(3HB)] coating on the bacterial communities of artificial structures. PLoS One 2024; 19:e0300929. [PMID: 38635673 PMCID: PMC11025745 DOI: 10.1371/journal.pone.0300929] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2023] [Accepted: 03/06/2024] [Indexed: 04/20/2024] Open
Abstract
The expanding urbanization of coastal areas has led to increased ocean sprawl, which has had both physical and chemical adverse effects on marine and coastal ecosystems. To maintain the health and functionality of these ecosystems, it is imperative to develop effective solutions. One such solution involves the use of biodegradable polymers as bioactive coatings to enhance the bioreceptivity of marine and coastal infrastructures. Our study aimed to explore two main objectives: (1) investigate PHA-degrading bacteria on polymer-coated surfaces and in surrounding seawater, and (2) comparing biofilm colonization between surfaces with and without the polymer coating. We applied poly(3-hydroxybutyrate) [P(3HB)) coatings on concrete surfaces at concentrations of 1% and 6% w/v, with varying numbers of coating cycles (1, 3, and 6). Our findings revealed that the addition of P(3HB) indeed promoted accelerated biofilm growth on the coated surfaces, resulting in an occupied area approximately 50% to 100% larger than that observed in the negative control. This indicates a remarkable enhancement, with the biofilm expanding at a rate roughly 1.5 to 2 times faster than the untreated surfaces. We observed noteworthy distinctions in biofilm growth patterns based on varying concentration and number of coating cycles. Interestingly, treatments with low concentration and high coating cycles exhibited comparable biofilm enhancements to those with high concentrations and low coating cycles. Further investigation into the bacterial communities responsible for the degradation of P(3HB) coatings identified mostly common and widespread strains but found no relation between the concentration and coating cycles. Nevertheless, this microbial degradation process was found to be highly efficient, manifesting noticeable effects within a single month. While these initial findings are promising, it's essential to conduct tests under natural conditions to validate the applicability of this approach. Nonetheless, our study represents a novel and bio-based ecological engineering strategy for enhancing the bioreceptivity of marine and coastal structures.
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Affiliation(s)
- Yee Jean Chai
- Centre for Global Sustainability Studies, Universiti Sains Malaysia, Minden, Penang, Malaysia
| | - Taufiq Ahmad Syauqi
- School of Biological Sciences, Universiti Sains Malaysia, Minden, Penang, Malaysia
| | - Kumar Sudesh
- School of Biological Sciences, Universiti Sains Malaysia, Minden, Penang, Malaysia
| | - Tan Leng Ee
- School of Housing, Building and Planning, Universiti Sains Malaysia, Minden, Penang, Malaysia
| | - Cheah Chee Ban
- School of Housing, Building and Planning, Universiti Sains Malaysia, Minden, Penang, Malaysia
| | - Amanda Chong Kar Mun
- Centre for Global Sustainability Studies, Universiti Sains Malaysia, Minden, Penang, Malaysia
| | - Elisabeth Marijke Anne Strain
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, Australia
- Centre for Marine Socioecology, University of Tasmania, Hobart, Australia
| | - Faradina Merican
- School of Biological Sciences, Universiti Sains Malaysia, Minden, Penang, Malaysia
| | | | | | - Chee Su Yin
- Centre for Global Sustainability Studies, Universiti Sains Malaysia, Minden, Penang, Malaysia
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32
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Shi C, Quinn EC, Diment WT, Chen EYX. Recyclable and (Bio)degradable Polyesters in a Circular Plastics Economy. Chem Rev 2024; 124:4393-4478. [PMID: 38518259 DOI: 10.1021/acs.chemrev.3c00848] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/24/2024]
Abstract
Polyesters carrying polar main-chain ester linkages exhibit distinct material properties for diverse applications and thus play an important role in today's plastics economy. It is anticipated that they will play an even greater role in tomorrow's circular plastics economy that focuses on sustainability, thanks to the abundant availability of their biosourced building blocks and the presence of the main-chain ester bonds that can be chemically or biologically cleaved on demand by multiple methods and thus bring about more desired end-of-life plastic waste management options. Because of this potential and promise, there have been intense research activities directed at addressing recycling, upcycling or biodegradation of existing legacy polyesters, designing their biorenewable alternatives, and redesigning future polyesters with intrinsic chemical recyclability and tailored performance that can rival today's commodity plastics that are either petroleum based and/or hard to recycle. This review captures these exciting recent developments and outlines future challenges and opportunities. Case studies on the legacy polyesters, poly(lactic acid), poly(3-hydroxyalkanoate)s, poly(ethylene terephthalate), poly(butylene succinate), and poly(butylene-adipate terephthalate), are presented, and emerging chemically recyclable polyesters are comprehensively reviewed.
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Affiliation(s)
- Changxia Shi
- Department of Chemistry, Colorado State University, Fort Collins, Colorado 80523, United States
| | - Ethan C Quinn
- Department of Chemistry, Colorado State University, Fort Collins, Colorado 80523, United States
| | - Wilfred T Diment
- Department of Chemistry, Colorado State University, Fort Collins, Colorado 80523, United States
| | - Eugene Y-X Chen
- Department of Chemistry, Colorado State University, Fort Collins, Colorado 80523, United States
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Mitsumori C, Tsuboi S, Shimamura M, Miura T. Application of MicroResp™ for quick and easy detection of plastic degradation by marine bacterial isolates. MARINE ENVIRONMENTAL RESEARCH 2024; 196:106430. [PMID: 38447329 DOI: 10.1016/j.marenvres.2024.106430] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2023] [Revised: 01/26/2024] [Accepted: 02/26/2024] [Indexed: 03/08/2024]
Abstract
Microplastic debris in the marine environment is a global problem. Biodegradable polymers are being developed as alternatives to petroleum-based plastics, and quick and easy methods for screening for bacterial strains that can degrade such polymers are needed. As a screening method, the clear zone method has been widely used but has technical difficulties such as plate preparation and interpretation of results. In this study, we adapted the MicroResp™ system to easily detect biodegradation activity of marine bacteria in a 3-day assay. Among the 6 bacterial strains tested, 3, 2 and 1 strain degraded poly (butylene succinate-co-adipate) (PBSA), poly (ε-caprolactone) (PCL) and poly (3-hydroxybutyrate-co-3-hydroxyhexanoate), respectively. Only one strain that showed degradation activity of PBSA and PCL in the MicroResp™ system was also positive in the clear zone assay on the respective emulsion plates. Our results show that the adapted MicroResp™ system can screen for bacterial strains that degrade plastic.
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Affiliation(s)
- Cristina Mitsumori
- Biological Resource Center, National Institute of Technology and Evaluation (NBRC), Kisarazu, 292-0818, Japan
| | - Shun Tsuboi
- Biological Resource Center, National Institute of Technology and Evaluation (NBRC), Kisarazu, 292-0818, Japan.
| | - Mamiko Shimamura
- Biological Resource Center, National Institute of Technology and Evaluation (NBRC), Kisarazu, 292-0818, Japan
| | - Takamasa Miura
- Biological Resource Center, National Institute of Technology and Evaluation (NBRC), Kisarazu, 292-0818, Japan
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Zhang Y, Cao Y, Chen B, Dong G, Zhao Y, Zhang B. Marine biodegradation of plastic films by Alcanivorax under various ambient temperatures: Bacterial enrichment, morphology alteration, and release of degradation products. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 917:170527. [PMID: 38286285 DOI: 10.1016/j.scitotenv.2024.170527] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Revised: 01/25/2024] [Accepted: 01/26/2024] [Indexed: 01/31/2024]
Abstract
The global ocean has been receiving massive amounts of plastic wastes. Marine biodegradation, influenced by global climate, naturally breaks down these wastes. In this study, we systematically compared the biodegradation performance of petroleum- and bio-based plastic films, i.e., low-density polyethylene (LDPE), polylactic acid (PLA), and polyhydroxyalkanoates (PHAs) under three ambient temperatures (4, 15, and 22 °C). We deployed the our previously isolated cold-tolerant plastic-degrading Alcanivorax to simulate the accelerated marine biodegradation process and evaluated the alteration of bacterial growth, plastic films, and released degradation products. Notably, we found that marine biodegradation of PHA films enriched more bacterial amounts, induced more conspicuous morphological damage, and released more microplastics (MPs) and dissolved organic carbon (DOC) under all temperatures compared to LDPE and PLA. Particularly, MPs were released from film edges and cracks with a mean size of 2.8 μm under all temperatures. In addition, the degradation products released by biodegradation of PHA under 22 °C induced the highest acute toxicity to Vibrio fischeri. Our results highlighted that: (1) marine biodegradation of plastics would release millions of MPs per cm2 exposed surface area even in cold environments within 60 days; (2) different marine biodegradation scenarios of these plastics may raise disparate impacts and mitigation-related studies.
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Affiliation(s)
- Yuanmei Zhang
- Northern Region Persistent Organic Pollution Control (NRPOP) Laboratory, Faculty of Engineering and Applied Science, Memorial University, St. John's, NL A1B 3X5, Canada
| | - Yiqi Cao
- Northern Region Persistent Organic Pollution Control (NRPOP) Laboratory, Faculty of Engineering and Applied Science, Memorial University, St. John's, NL A1B 3X5, Canada.
| | - Bing Chen
- Northern Region Persistent Organic Pollution Control (NRPOP) Laboratory, Faculty of Engineering and Applied Science, Memorial University, St. John's, NL A1B 3X5, Canada
| | - Guihua Dong
- Northern Region Persistent Organic Pollution Control (NRPOP) Laboratory, Faculty of Engineering and Applied Science, Memorial University, St. John's, NL A1B 3X5, Canada
| | - Yuanyuan Zhao
- MOE Key Laboratory of Resources and Environmental Systems Optimization, North China Electric Power University, Beijing 102206, China
| | - Baiyu Zhang
- Northern Region Persistent Organic Pollution Control (NRPOP) Laboratory, Faculty of Engineering and Applied Science, Memorial University, St. John's, NL A1B 3X5, Canada.
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35
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Lyshtva P, Voronova V, Barbir J, Leal Filho W, Kröger SD, Witt G, Miksch L, Sabowski R, Gutow L, Frank C, Emmerstorfer-Augustin A, Agustin-Salazar S, Cerruti P, Santagata G, Stagnaro P, D'Arrigo C, Vignolo M, Krång AS, Strömberg E, Lehtinen L, Annunen V. Degradation of a poly(3-hydroxybutyrate- co-3-hydroxyvalerate) (PHBV) compound in different environments. Heliyon 2024; 10:e24770. [PMID: 38322905 PMCID: PMC10844030 DOI: 10.1016/j.heliyon.2024.e24770] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2023] [Revised: 11/03/2023] [Accepted: 01/14/2024] [Indexed: 02/08/2024] Open
Abstract
Poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV) is a promising biodegradable bio-based material, which is designed for a vast range of applications, depending on its composite. This study aims to assess the degradability of a PHBV-based compound under different conditions. The research group followed different methodological approaches and assessed visual and mass changes, mechanical and morphological properties, spectroscopic and structural characterisation, along with thermal behaviour. The Ph-Stat (enzymatic degradation) test and total dry solids (TDS)/total volatile solids (TVS) measurements were carried out. Finally, the team experimentally evaluated the amount of methane and carbon dioxide produced, i.e., the degree of biodegradation under aerobic conditions. According to the results, different types of tests have shown differing effects of environmental conditions on material degradation. In conclusion, this paper provides a summary of the investigations regarding the degradation behaviour of the PHBV-based compound under varying environmental factors. The main strengths of the study lie in its multi-faceted approach, combining assessments of PHBV-based compound degradability under different conditions using various analytical tools, such as visual and mass changes, mechanical and morphological properties, spectroscopic and structural characterization, and thermal behavior. These methods collectively contribute to the robustness and reliability of the undertaken work.
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Affiliation(s)
- Pavlo Lyshtva
- Tallinn University of Technology, Ehitajate tee 5, 19086, Tallinn, Estonia
| | - Viktoria Voronova
- Tallinn University of Technology, Ehitajate tee 5, 19086, Tallinn, Estonia
| | - Jelena Barbir
- Hamburg University of Applied Sciences, Ulmenliet 20, 21033, Hamburg, Germany
| | - Walter Leal Filho
- Hamburg University of Applied Sciences, Ulmenliet 20, 21033, Hamburg, Germany
| | - Silja Denise Kröger
- Hamburg University of Applied Sciences, Ulmenliet 20, 21033, Hamburg, Germany
| | - Gesine Witt
- Hamburg University of Applied Sciences, Ulmenliet 20, 21033, Hamburg, Germany
| | - Lukas Miksch
- Alfred Wegener Institute, Am Handelshafen 12, 27570, Bremerhaven, Germany
| | - Reinhard Sabowski
- Alfred Wegener Institute, Am Handelshafen 12, 27570, Bremerhaven, Germany
| | - Lars Gutow
- Alfred Wegener Institute, Am Handelshafen 12, 27570, Bremerhaven, Germany
| | - Carina Frank
- Austrian Centre of Industrial Biotechnology, Krenngasse 37/2, A-8010, Graz, Austria
| | | | - Sarai Agustin-Salazar
- Institute for Polymers, Composites and Biomaterials, National Research Council, Via Campi Flegrei 34, 80078, Pozzuoli (NA), Italy
| | - Pierfrancesco Cerruti
- Institute for Polymers, Composites and Biomaterials, National Research Council, Via Campi Flegrei 34, 80078, Pozzuoli (NA), Italy
| | - Gabriella Santagata
- Institute for Polymers, Composites and Biomaterials, National Research Council, Via Campi Flegrei 34, 80078, Pozzuoli (NA), Italy
| | - Paola Stagnaro
- Institute of Chemical Sciences and Technologies "Giulio Natta", National Research Council, Via De Marini 6, 16149, Genova, Italy
| | - Cristina D'Arrigo
- Institute of Chemical Sciences and Technologies "Giulio Natta", National Research Council, Via De Marini 6, 16149, Genova, Italy
| | - Maurizio Vignolo
- Institute of Chemical Sciences and Technologies "Giulio Natta", National Research Council, Via De Marini 6, 16149, Genova, Italy
| | - Anna-Sara Krång
- IVL Swedish Environmental Research Institute, Valhallavägen 81, 114 28, Stockholm, Sweden
| | - Emma Strömberg
- IVL Swedish Environmental Research Institute, Valhallavägen 81, 114 28, Stockholm, Sweden
| | - Liisa Lehtinen
- Turku University of Applied Sciences, Joukahaisenkatu 3, 20520, Turku, Finland
| | - Ville Annunen
- Turku University of Applied Sciences, Joukahaisenkatu 3, 20520, Turku, Finland
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36
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Yoo Y, Young Kwon D, Jeon M, Lee J, Kwon H, Lee D, Seong Khim J, Choi YE, Kim JJ. Enhancing poly(3-hydroxybutyrate) production in halophilic bacteria through improved salt tolerance. BIORESOURCE TECHNOLOGY 2024; 394:130175. [PMID: 38086463 DOI: 10.1016/j.biortech.2023.130175] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2023] [Revised: 12/06/2023] [Accepted: 12/06/2023] [Indexed: 12/17/2023]
Abstract
Polyhydroxyalkanoates (PHA) have emerged as a promising bio-compound in the industrial application due to their potential to replace conventional petroleum-based plastics with sustainable bioplastics. This study focuses on Halomonas sp. YJPS3-3, a halophilic bacterium, and presents a novel approach to enhance PHA production by exploiting its salt tolerance toward PHA biosynthesis. Through gamma irradiation-induced mutants with enhanced salt tolerance from 15% NaCl to 20% NaCl, mutant halo6 showing a significant 11% increase in PHA yield, was achieved. Moreover, the mutants displayed not only higher PHA content but also remarkable cell morphology with elongation. In addition, this research unravels the genetic determinants behind the elevated PHA content and identifies a corresponding shift in fatty acid composition favoring PHA accumulation. This novel mutant obtained from gamma irradiation with enhanced salt tolerance in halophilic bacteria opens up new avenues not only for the bioplastic industry but also for applications in the production of high-value metabolites.
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Affiliation(s)
- Yeonjae Yoo
- Division of Environmental Science & Ecological Engineering, College of Life Sciences & Biotechnology, Korea University, Seoul 02841, Republic of Korea
| | - Dae Young Kwon
- Division of Environmental Science & Ecological Engineering, College of Life Sciences & Biotechnology, Korea University, Seoul 02841, Republic of Korea
| | - Minseo Jeon
- Advanced Radiation Technology Institute, Korea Atomic Energy Research Institute, Jeongeup 56212, Republic of Korea
| | - Jaehoon Lee
- Department of Plant Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul 02841, Republic of Korea
| | - Haeun Kwon
- Department of Plant Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul 02841, Republic of Korea
| | - Dongho Lee
- Department of Plant Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul 02841, Republic of Korea
| | - Jong Seong Khim
- School of Earth and Environmental Sciences & Research Institute of Oceanography, Seoul National University, Seoul 08826, Republic of Korea
| | - Yoon-E Choi
- Division of Environmental Science & Ecological Engineering, College of Life Sciences & Biotechnology, Korea University, Seoul 02841, Republic of Korea
| | - Jae-Jin Kim
- Division of Environmental Science & Ecological Engineering, College of Life Sciences & Biotechnology, Korea University, Seoul 02841, Republic of Korea.
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Omura T, Isobe N, Miura T, Ishii S, Mori M, Ishitani Y, Kimura S, Hidaka K, Komiyama K, Suzuki M, Kasuya KI, Nomaki H, Nakajima R, Tsuchiya M, Kawagucci S, Mori H, Nakayama A, Kunioka M, Kamino K, Iwata T. Microbial decomposition of biodegradable plastics on the deep-sea floor. Nat Commun 2024; 15:568. [PMID: 38278791 PMCID: PMC10817984 DOI: 10.1038/s41467-023-44368-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2022] [Accepted: 12/11/2023] [Indexed: 01/28/2024] Open
Abstract
Microbes can decompose biodegradable plastics on land, rivers and seashore. However, it is unclear whether deep-sea microbes can degrade biodegradable plastics in the extreme environmental conditions of the seafloor. Here, we report microbial decomposition of representative biodegradable plastics (polyhydroxyalkanoates, biodegradable polyesters, and polysaccharide esters) at diverse deep-sea floor locations ranging in depth from 757 to 5552 m. The degradation of samples was evaluated in terms of weight loss, reduction in material thickness, and surface morphological changes. Poly(L-lactic acid) did not degrade at either shore or deep-sea sites, while other biodegradable polyesters, polyhydroxyalkanoates, and polysaccharide esters were degraded. The rate of degradation slowed with water depth. We analysed the plastic-associated microbial communities by 16S rRNA gene amplicon sequencing and metagenomics. Several dominant microorganisms carried genes potentially encoding plastic-degrading enzymes such as polyhydroxyalkanoate depolymerases and cutinases/polyesterases. Analysis of available metagenomic datasets indicated that these microorganisms are present in other deep-sea locations. Our results confirm that biodegradable plastics can be degraded by the action of microorganisms on the deep-sea floor, although with much less efficiency than in coastal settings.
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Affiliation(s)
- Taku Omura
- Laboratory of Science of Polymeric Materials, Department of Biomaterial Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657, Japan
| | - Noriyuki Isobe
- Research Institute for Marine Resources Utilization, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka, Kanagawa, 237-0061, Japan
| | - Takamasa Miura
- Biological Resource Center, National Institute of Technology and Evaluation (NBRC), 2-5-8 Kazusakamatari, Kisarazu, Chiba, 292-0818, Japan
| | - Shun'ichi Ishii
- Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-STAR), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka, Kanagawa, 237-0061, Japan
| | - Mihoko Mori
- Biological Resource Center, National Institute of Technology and Evaluation (NBRC), 2-5-8 Kazusakamatari, Kisarazu, Chiba, 292-0818, Japan
| | - Yoshiyuki Ishitani
- Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-STAR), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka, Kanagawa, 237-0061, Japan
| | - Satoshi Kimura
- Laboratory of Science of Polymeric Materials, Department of Biomaterial Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657, Japan
| | - Kohei Hidaka
- Biological Resource Center, National Institute of Technology and Evaluation (NBRC), 2-5-8 Kazusakamatari, Kisarazu, Chiba, 292-0818, Japan
| | - Katsuya Komiyama
- Laboratory of Science of Polymeric Materials, Department of Biomaterial Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657, Japan
| | - Miwa Suzuki
- Gunma University Center for Food Science and Wellness (GUCFW), Maebashi, Gunma, 371-8510, Japan
| | - Ken-Ichi Kasuya
- Gunma University Center for Food Science and Wellness (GUCFW), Maebashi, Gunma, 371-8510, Japan
- Green Polymer Research Laboratory, Graduate School of Science and Technology, Gunma University, Kiryu, Gunma, 376-8515, Japan
| | - Hidetaka Nomaki
- Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-STAR), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka, Kanagawa, 237-0061, Japan
| | - Ryota Nakajima
- Research Institute for Global Change (RIGC), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka, Kanagawa, 237-0061, Japan
| | - Masashi Tsuchiya
- Research Institute for Global Change (RIGC), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka, Kanagawa, 237-0061, Japan
| | - Shinsuke Kawagucci
- Research Institute for Global Change (RIGC), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka, Kanagawa, 237-0061, Japan
| | - Hiroyuki Mori
- Japan BioPlastics Association (JBPA), 5-11 Nihonbashi Hakozaki-cho, Chuo-ku, Tokyo, 103-0015, Japan
| | - Atsuyoshi Nakayama
- Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 1-8-31 Midorigaoka, Ikeda, Osaka, 563-8577, Japan
| | - Masao Kunioka
- Standardization Promotion Office, National Institute of Advanced Industrial Science and Technology (AIST), 1-1-1 Umezono, Tsukuba, Ibaraki, 305-8560, Japan
| | - Kei Kamino
- Biological Resource Center, National Institute of Technology and Evaluation (NBRC), 2-5-8 Kazusakamatari, Kisarazu, Chiba, 292-0818, Japan
| | - Tadahisa Iwata
- Laboratory of Science of Polymeric Materials, Department of Biomaterial Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657, Japan.
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38
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Derippe G, Philip L, Lemechko P, Eyheraguibel B, Meistertzheim AL, Pujo-Pay M, Conan P, Barbe V, Bruzaud S, Ghiglione JF. Marine biodegradation of tailor-made polyhydroxyalkanoates (PHA) influenced by the chemical structure and associated bacterial communities. JOURNAL OF HAZARDOUS MATERIALS 2024; 462:132782. [PMID: 37856958 DOI: 10.1016/j.jhazmat.2023.132782] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Revised: 10/12/2023] [Accepted: 10/12/2023] [Indexed: 10/21/2023]
Abstract
Over recent years, biodegradable polymers have been proposed to reduce environmental impacts of plastics for specific applications. The production of polyhydroxyalkanoates (PHA) by using diverse carbon sources provides further benefits for the sustainable development of biodegradable plastics. Here, we present the first study evaluating the impact of physical, chemical and biological factors driving the biodegradability of various tailor-made PHAs in the marine environment. Our multidisciplinary approach demonstrated that the chemical structure of the polymer (i.e. the side chain size for short- vs. medium-chain PHA) which was intrinsically correlated to the physico-chemical properties, together with the specificity of the biofilm growing on plastic films (i.e., the associated 'plastisphere') were the main drivers of the PHA biodegradation in the marine environment.
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Affiliation(s)
- Gabrielle Derippe
- CNRS, Sorbonne Université, UMR 7621, Laboratoire d'Océanographie Microbienne (LOMIC), 1 Avenue Fabre, F-66650 Banyuls sur mer, France; Université Bretagne Sud, Institut de Recherche Dupuy de Lôme (IRDL), UMR CNRS 6027, 56321 Lorient, France
| | - Léna Philip
- CNRS, Sorbonne Université, UMR 7621, Laboratoire d'Océanographie Microbienne (LOMIC), 1 Avenue Fabre, F-66650 Banyuls sur mer, France; SAS Plastic@Sea, Observatoire Océanologique de Banyuls, France
| | - Pierre Lemechko
- Institut Régional des Matériaux Avancés (IRMA), 2 all. Copernic, 56270 Ploemeur, France
| | - Boris Eyheraguibel
- Université Clermont Auvergne, Clermont Auvergne INP, CNRS, Institut de Chimie (ICCF), Clermont- Ferrand, France
| | | | - Mireille Pujo-Pay
- CNRS, Sorbonne Université, UMR 7621, Laboratoire d'Océanographie Microbienne (LOMIC), 1 Avenue Fabre, F-66650 Banyuls sur mer, France
| | - Pascal Conan
- CNRS, Sorbonne Université, UMR 7621, Laboratoire d'Océanographie Microbienne (LOMIC), 1 Avenue Fabre, F-66650 Banyuls sur mer, France
| | - Valérie Barbe
- Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France
| | - Stéphane Bruzaud
- Université Bretagne Sud, Institut de Recherche Dupuy de Lôme (IRDL), UMR CNRS 6027, 56321 Lorient, France
| | - Jean-François Ghiglione
- CNRS, Sorbonne Université, UMR 7621, Laboratoire d'Océanographie Microbienne (LOMIC), 1 Avenue Fabre, F-66650 Banyuls sur mer, France.
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Zampolli J, Vezzini D, Brocca S, Di Gennaro P. Insights into the biodegradation of polycaprolactone through genomic analysis of two plastic-degrading Rhodococcus bacteria. Front Microbiol 2024; 14:1284956. [PMID: 38235436 PMCID: PMC10791956 DOI: 10.3389/fmicb.2023.1284956] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Accepted: 11/17/2023] [Indexed: 01/19/2024] Open
Abstract
Polycaprolactone (PCL) is an aliphatic polyester often utilized as a model to investigate the biodegradation potential of bacteria and the involved catabolic enzymes. This study aims to characterize PCL biodegradative metabolic potential and correlate it to genomic traits of two plastic-degrading bacteria-Rhodococcus erythropolis D4 strain, a new isolate from plastic-rich organic waste treatment plant, and Rhodococcus opacus R7, known for its relevant biodegradative potential on polyethylene and similar compounds. After preliminary screening for bacteria capable of hydrolyzing tributyrin and PCL, the biodegradation of PCL was evaluated in R. erythropolis D4 and R. opacus R7 by measuring their growth and the release of PCL catabolism products up to 42 days. After 7 days, an increase of at least one order of magnitude of cell number was observed. GC-MS analyses of 28-day culture supernatants showed an increase in carboxylic acids in both Rhodococcus cultures. Furthermore, hydrolytic activity (~5 U mg-1) on short/medium-chain p-nitrophenyl esters was detected in their supernatant. Finally, a comparative genome analysis was performed between two Rhodococcus strains. A comparison with genes annotated in reference strains revealed hundreds of gene products putatively related to polyester biodegradation. Based on additional predictive analysis of gene products, gene expression was performed on a smaller group of genes, revealing that exposure to PCL elicits the greatest increase in transcription for a single gene in strain R7 and two genes, including that encoding a putative lipase, in strain D4. This work exhibits a multifaceted experimental approach to exploit the broad potential of Rhodococcus strains in the field of plastic biodegradation.
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Affiliation(s)
| | | | | | - Patrizia Di Gennaro
- Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy
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40
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Rajeshkumar L, Kumar PS, Ramesh M, Sanjay MR, Siengchin S. Assessment of biodegradation of lignocellulosic fiber-based composites - A systematic review. Int J Biol Macromol 2023; 253:127237. [PMID: 37804890 DOI: 10.1016/j.ijbiomac.2023.127237] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Revised: 09/29/2023] [Accepted: 10/01/2023] [Indexed: 10/09/2023]
Abstract
Lignocellulosic fiber-reinforced polymer composites are the most extensively used modern-day materials with low density and better specific strength specifically developed to render better physical, mechanical, and thermal properties. Synthetic fiber-reinforced composites face some serious issues like low biodegradability, non-environmentally friendly, and low disposability. Lignocellulosic or natural fiber-reinforced composites, which are developed from various plant-based fibers and animal-based fibers are considered potential substitutes for synthetic fiber composites because they are characterized by lightweight, better biodegradability, and are available at low cost. It is very much essential to study end-of-life (EoL) conditions like biodegradability for the biocomposites which occur commonly after their service life. During biodegradation, the physicochemical arrangement of the natural fibers, the environmental conditions, and the microbial populations, to which the natural fiber composites are exposed, play the most influential factors. The current review focuses on a comprehensive discussion of the standards and assessment methods of biodegradation in aerobic and anaerobic conditions on a laboratory scale. This review is expected to serve the materialists and technologists who work on the EoL behaviour of various materials, particularly in natural fiber-reinforced polymer composites to apply these standards and test methods to various classes of biocomposites for developing sustainable materials.
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Affiliation(s)
- L Rajeshkumar
- Centre for Machining and Materials Testing, KPR Institute of Engineering and Technology, Coimbatore, Tamil Nadu, India
| | - P Sathish Kumar
- Natural Composites Research Group Lab, Department of Materials and Production Engineering, The Sirindhorn International Thai-German Graduate School of Engineering (TGGS), King Mongkut's University of Technology North Bangkok (KMUTNB), Bangkok, Thailand
| | - M Ramesh
- Department of Mechanical Engineering, KIT-Kalaignarkarunanidhi Institute of Technology, Coimbatore, Tamil Nadu, India
| | - M R Sanjay
- Natural Composites Research Group Lab, Department of Materials and Production Engineering, The Sirindhorn International Thai-German Graduate School of Engineering (TGGS), King Mongkut's University of Technology North Bangkok (KMUTNB), Bangkok, Thailand.
| | - Suchart Siengchin
- Natural Composites Research Group Lab, Department of Materials and Production Engineering, The Sirindhorn International Thai-German Graduate School of Engineering (TGGS), King Mongkut's University of Technology North Bangkok (KMUTNB), Bangkok, Thailand
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41
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Jaffur BN, Kumar G, Jeetah P, Ramakrishna S, Bhatia SK. Current advances and emerging trends in sustainable polyhydroxyalkanoate modification from organic waste streams for material applications. Int J Biol Macromol 2023; 253:126781. [PMID: 37696371 DOI: 10.1016/j.ijbiomac.2023.126781] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2023] [Revised: 08/29/2023] [Accepted: 09/05/2023] [Indexed: 09/13/2023]
Abstract
The current processes for producing polyhydroxyalkanoates (PHAs) are costly, owing to the high cost of cultivation feedstocks, and the need to sterilise the growth medium, which is energy-intensive. PHA has been identified as a promising biomaterial with a wide range of potential applications and its functionalization from waste streams has made significant advances recently, which can help foster the growth of a circular economy and waste reduction. Recent developments and novel approaches in the functionalization of PHAs derived from various waste streams offer opportunities for addressing these issues. This study focuses on the development of sustainable, efficient, and cutting-edge methods, such as advanced bioprocess engineering, novel catalysts, and advances in materials science. Chemical techniques, such as epoxidation, oxidation, and esterification, have been employed for PHA functionalization, while enzymatic and microbial methods have indicated promise. PHB/polylactic acid blends with cellulose fibers showed improved tensile strength by 24.45-32.08 % and decreased water vapor and oxygen transmission rates while PHB/Polycaprolactone blends with a 1:1 ratio demonstrated an elongation at break four to six times higher than pure PHB, without altering tensile strength or elastic modulus. Moreover, PHB films blended with both polyethylene glycol and esterified sodium alginate showed improvements in crystallinity and decreased hydrophobicity.
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Affiliation(s)
- Bibi Nausheen Jaffur
- Department of Chemical and Environmental Engineering, Faculty of Engineering, University of Mauritius, Réduit 80837, Mauritius.
| | - Gopalakrishnan Kumar
- Institute of Chemistry, Bioscience and Environmental, Engineering, Faculty of Science and Technology, University of Stavanger, Stavanger, Norway; School of Civil and Environmental Engineering, Yonsei University, Seoul 03722, South Korea
| | - Pratima Jeetah
- Department of Chemical and Environmental Engineering, Faculty of Engineering, University of Mauritius, Réduit 80837, Mauritius
| | - Seeram Ramakrishna
- Department of Mechanical Engineering, College of Design and Engineering, National University of Singapore, 9 Engineering Drive 1, 117575, Singapore
| | - Shashi Kant Bhatia
- Department of Biological Engineering, Konkuk University, Seoul 05029, South Korea
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Bhalerao A, Dueker U, Weber M, Eich A, Lott C, Endres HJ, Nogueira R. Bacterial diversity of biofilms on polyhydroxybutyrate exposed to marine conditions: Ex-situ vs. in-situ tests. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 905:167458. [PMID: 37777124 DOI: 10.1016/j.scitotenv.2023.167458] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2023] [Revised: 09/18/2023] [Accepted: 09/27/2023] [Indexed: 10/02/2023]
Abstract
Biofilms form on any available surface and, depending on the characteristics of the material and the environmental conditions, biodegradation can take place. We compared the bacterial composition of polyhydroxybutyrate (PHB)-related biofilm communities from marine ex-situ and in-situ tests to assess the differences in diversity and abundance between these two biofilms. This comparison will help to better assess the transferability of tank tests to real-life scenarios. The in-situ tests were set up in the Mediterranean Sea on the Island of Elba, Italy where PHB-tensile bars were lodged in the sediments. This created a water-exposed aerobic and mud-planted anaerobic scenario. The ex-situ tests were modeled after in-situ tests and performed in temperature-controlled tanks. The PHB-related biofilms were harvested after 240 days of exposure along with planktonic bacteria, and particle- and sediment-related biofilm. The bacterial composition was elucidated using 16S rDNA sequencing. Biofilms harvested from the in-situ test were more diverse, less even, and contained more rare species compared to biofilms from the ex-situ test. The PHB-related biofilm was characterized by a higher abundance of the bacterial order Desulfobacterales. The composition of PHB-related biofilm varied significantly between the two tests and between aerobic and anaerobic conditions. The composition of PHB-related biofilm was significantly different from planktonic bacteria, particle, and sediment-related biofilm, showing the influence of PHB on the biofilm composition. Thus, the ex-situ tank test for PHB degradation cannot, in terms of bacterial composition, simulate the in-situ conditions to their full extent.
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Affiliation(s)
- Aniruddha Bhalerao
- Institute of Sanitary Engineering and Waste Management, Leibniz University Hannover, Welfengarten 1, D-30167 Hannover, Germany
| | - Urda Dueker
- Institute of Sanitary Engineering and Waste Management, Leibniz University Hannover, Welfengarten 1, D-30167 Hannover, Germany
| | - Miriam Weber
- HYDRA Marine Sciences GmbH, Steinfeldweg 15, 77815 Bühl, Germany
| | - Andreas Eich
- HYDRA Marine Sciences GmbH, Steinfeldweg 15, 77815 Bühl, Germany
| | - Christian Lott
- HYDRA Marine Sciences GmbH, Steinfeldweg 15, 77815 Bühl, Germany
| | - Hans Josef Endres
- Institute for Plastics and Circulation Technology, Leibniz University Hannover, An der Universität 2, 30823 Garbsen, Germany
| | - Regina Nogueira
- Institute of Sanitary Engineering and Waste Management, Leibniz University Hannover, Welfengarten 1, D-30167 Hannover, Germany.
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43
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Huang Q, Kimura S, Iwata T. Thermal Embedding of Humicola insolens Cutinase: A Strategy for Improving Polyester Biodegradation in Seawater. Biomacromolecules 2023; 24:5836-5846. [PMID: 37940601 DOI: 10.1021/acs.biomac.3c00835] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2023]
Abstract
By thermal embedding of the commercially available enzyme Humicola insolens cutinase (HiC), this study successfully enhanced the biodegradability of various polyesters (PBS, PBSA, PCL, PBAT) in seawater, which otherwise show limited environmental degradability. Melt extrusion above the melting temperature was used for embedding HiC in the polyesters. The overall physical properties of the HiC-embedded films remained almost unchanged compared to those of the neat films. In the buffer, embedding HiC allowed rapid polymer degradation into water-soluble hydrolysis products. Biochemical oxygen demand tests showed that the HiC-embedded polyester films exhibited similar or much higher biodegradability than the biodegradable cellulose standard in natural seawater. Thermal embedding of HiC aims to accelerate the biodegradation of plastics that are already biodegradable but have limited environmental biodegradability, potentially reducing their contribution to environmental problems such as marine microplastics.
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Affiliation(s)
- QiuYuan Huang
- Science of Polymeric Materials, Department of Biomaterial Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan
| | - Satoshi Kimura
- Science of Polymeric Materials, Department of Biomaterial Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan
| | - Tadahisa Iwata
- Science of Polymeric Materials, Department of Biomaterial Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan
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Jin A, del Valle LJ, Puiggalí J. Copolymers and Blends Based on 3-Hydroxybutyrate and 3-Hydroxyvalerate Units. Int J Mol Sci 2023; 24:17250. [PMID: 38139077 PMCID: PMC10743438 DOI: 10.3390/ijms242417250] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2023] [Revised: 11/29/2023] [Accepted: 12/05/2023] [Indexed: 12/24/2023] Open
Abstract
This review presents a comprehensive update of the biopolymer poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV), emphasizing its production, properties, and applications. The overall biosynthesis pathway of PHBV is explored in detail, highlighting recent advances in production techniques. The inherent physicochemical properties of PHBV, along with its degradation behavior, are discussed in detail. This review also explores various blends and composites of PHBV, demonstrating their potential for a range of applications. Finally, the versatility of PHBV-based materials in multiple sectors is examined, emphasizing their increasing importance in the field of biodegradable polymers.
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Affiliation(s)
- Anyi Jin
- Departament d’Enginyeria Química, Universitat Politècnica de Catalunya, EEBE, Av. Eduard Maristany 10-14, 08019 Barcelona, Spain; (A.J.); (L.J.d.V.)
- Venvirotech Biotechnology S.L., Santa Perpètua de Mogoda, 08130 Barcelona, Spain
| | - Luis J. del Valle
- Departament d’Enginyeria Química, Universitat Politècnica de Catalunya, EEBE, Av. Eduard Maristany 10-14, 08019 Barcelona, Spain; (A.J.); (L.J.d.V.)
- Barcelona Research Center in Multiscale Science and Engineering, Universitat Politècnica de Catalunya, Campus Diagonal-Besòs, Av. Eduard Maristany 10-14, 08019 Barcelona, Spain
| | - Jordi Puiggalí
- Departament d’Enginyeria Química, Universitat Politècnica de Catalunya, EEBE, Av. Eduard Maristany 10-14, 08019 Barcelona, Spain; (A.J.); (L.J.d.V.)
- Barcelona Research Center in Multiscale Science and Engineering, Universitat Politècnica de Catalunya, Campus Diagonal-Besòs, Av. Eduard Maristany 10-14, 08019 Barcelona, Spain
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45
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Degli-Innocenti F, Breton T, Chinaglia S, Esposito E, Pecchiari M, Pennacchio A, Pischedda A, Tosin M. Microorganisms that produce enzymes active on biodegradable polyesters are ubiquitous. Biodegradation 2023; 34:489-518. [PMID: 37354274 DOI: 10.1007/s10532-023-10031-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2023] [Accepted: 05/30/2023] [Indexed: 06/26/2023]
Abstract
Biodegradability standards measure ultimate biodegradation of polymers by exposing the material under test to a natural microbial inoculum. Available tests developed by the International Organization for Standardization (ISO) use inoculums sampled from different environments e.g. soil, marine sediments, seawater. Understanding whether each inoculum is to be considered as microbially unique or not can be relevant for the interpretation of tests results. In this review, we address this question by consideration of the following: (i) the chemical nature of biodegradable plastics (virtually all biodegradable plastics are polyesters) (ii) the diffusion of ester bonds in nature both in simple molecules and in polymers (ubiquitous); (iii) the diffusion of decomposers capable of producing enzymes, called esterases, which accelerate the hydrolysis of esters, including polyesters (ubiquitous); (iv) the evidence showing that synthetic polyesters can be depolymerized by esterases (large and growing); (v) the evidence showing that these esterases are ubiquitous (growing and confirmed by bioinformatics studies). By combining the relevant available facts it can be concluded that if a certain polyester shows ultimate biodegradation when exposed to a natural inoculum, it can be considered biodegradable and need not be retested using other inoculums. Obviously, if the polymer does not show ultimate biodegradation it must be considered recalcitrant, until proven otherwise.
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Affiliation(s)
| | - Tony Breton
- Novamont S.p.A., via Fauser 8, 28100, Novara, Italy
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46
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Hachisuka SI, Sakurai T, Mizuno S, Kosuge K, Endo S, Ishii-Hyakutake M, Miyahara Y, Yamazaki M, Tsuge T. Isolation and characterization of polyhydroxyalkanoate-degrading bacteria in seawater at two different depths from Suruga Bay. Appl Environ Microbiol 2023; 89:e0148823. [PMID: 37855636 PMCID: PMC10686062 DOI: 10.1128/aem.01488-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Accepted: 09/04/2023] [Indexed: 10/20/2023] Open
Abstract
IMPORTANCE Polyhydroxyalkanoate (PHA) is a highly biodegradable microbial polyester, even in marine environments. In this study, we incorporated an enrichment culture-like approach in the process of isolating marine PHA-degrading bacteria. The resulting 91 isolates were suggested to fall into five genera (Alloalcanivorax, Alteromonas, Arenicella, Microbacterium, and Pseudoalteromonas) based on 16S rRNA analysis, including two novel genera (Arenicella and Microbacterium) as marine PHA-degrading bacteria. Microbacterium schleiferi (DSM 20489) and Alteromonas macleodii (NBRC 102226), the type strains closest to the several isolates, have an extracellular poly(3-hydroxybutyrate) [P(3HB)] depolymerase homolog that does not fit a marine-type domain composition. However, A. macleodii exhibited no PHA degradation ability, unlike M. schleiferi. This result demonstrates that the isolated Alteromonas spp. are different species from A. macleodii. P(3HB) depolymerase homologs in the genus Alteromonas should be scrutinized in the future, particularly about which ones work as the depolymerase.
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Affiliation(s)
- Shin-Ichi Hachisuka
- Department of Materials Science and Engineering, Tokyo Institute of Technology, Yokohama, Kanagawa, Japan
| | - Tetsuo Sakurai
- Department of Materials Science and Engineering, Tokyo Institute of Technology, Yokohama, Kanagawa, Japan
| | - Shoji Mizuno
- Department of Materials Science and Engineering, Tokyo Institute of Technology, Yokohama, Kanagawa, Japan
| | - Kazuho Kosuge
- Department of Materials Science and Engineering, Tokyo Institute of Technology, Yokohama, Kanagawa, Japan
| | - Sayaka Endo
- Department of Materials Science and Engineering, Tokyo Institute of Technology, Yokohama, Kanagawa, Japan
| | - Manami Ishii-Hyakutake
- Department of Materials Science and Engineering, Tokyo Institute of Technology, Yokohama, Kanagawa, Japan
| | - Yuki Miyahara
- Department of Materials Science and Engineering, Tokyo Institute of Technology, Yokohama, Kanagawa, Japan
| | - Motoyuki Yamazaki
- Shizuoka Prefectural Research Institute of Fishery and Ocean, Iwashigashima, Yaizu, Shizuoka, Japan
| | - Takeharu Tsuge
- Department of Materials Science and Engineering, Tokyo Institute of Technology, Yokohama, Kanagawa, Japan
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47
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Colwell J, Pratt S, Lant P, Laycock B. Hazardous state lifetimes of biodegradable plastics in natural environments. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 894:165025. [PMID: 37348710 DOI: 10.1016/j.scitotenv.2023.165025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2023] [Revised: 06/18/2023] [Accepted: 06/18/2023] [Indexed: 06/24/2023]
Abstract
Plastic pollution is a critical problem that has the potential for long-lasting impact. While all plastics eventually break down to at least some degree, they can remain in different transition states, such as microplastics and nanoplastics, for extended periods of time before reaching complete mineralisation to non-hazardous end products. Each of the transition states represents different types of hazards, so it is critical to understand the factors driving the lifetimes of plastics within these states. To do this, we propose a framework for assessing plastic lifetimes in natural environments based on the flow of material through potentially hazardous states: macroplastic and mesoplastic, microplastic, nanoplastic and soluble products. State changes within this framework are underpinned by three key processes: fragmentation, depolymerisation, and bioassimilation, with the pathways for generation of the different plastic states, and the lifetimes within these states, varying widely for individual materials in different environments due to their dependence on polymer material type, form and properties, and environmental factors. The critical factors driving these processes can therefore appear complex, but molecular weight, crystallinity, oxygen and water diffusivity, and inherent polymer chain reactivity (including to enzymes) are key to our understanding. By analysing currently available data that take factors such as these into consideration, we have generated information on the most likely states in which a range of plastics with different environmental degradation behaviour may exist over time in natural environments. Polyethylene (PE), for example, should be expected to fragment and accumulate in the environment as microplastic and nanoplastic. Interestingly, the state-profile for the biodegradable plastic polylactic acid (PLA) is similar, albeit over shorter timeframes. PLA also likely fragments, but then the relatively slow process of abiotic depolymerisation results in accumulation of microplastic and nanoplastic. By contrast, the state-profile for the biodegradable plastic polyhydroxyalkanoate (PHA) would be expected to be very different. The bulk material is less susceptible to embrittlement and fragmentation as a primary path to biodegradation, since the rapid enzyme catalysed depolymerisation of exposed surfaces proceeds in conjunction with bioassimilation.
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Affiliation(s)
- John Colwell
- School of Chemical Engineering, University of Queensland, St Lucia, Australia
| | - Steven Pratt
- School of Chemical Engineering, University of Queensland, St Lucia, Australia
| | - Paul Lant
- School of Chemical Engineering, University of Queensland, St Lucia, Australia
| | - Bronwyn Laycock
- School of Chemical Engineering, University of Queensland, St Lucia, Australia.
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Ota T, Montagna V, Higuchi Y, Kato T, Tanaka M, Sardon H, Fukushima K. Organocatalyzed ring-opening reactions of γ-carbonyl-substituted ε-caprolactones. RSC Adv 2023; 13:27764-27771. [PMID: 37731833 PMCID: PMC10507672 DOI: 10.1039/d3ra01025b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2023] [Accepted: 09/12/2023] [Indexed: 09/22/2023] Open
Abstract
Side-chain-functionalized aliphatic polyesters are promising as functional biodegradable polymers. We have investigated ring-opening reactions of γ-carbonyl-substituted ε-caprolactones (gCCLs) to obtain poly(ε-caprolactone) (PCL) analogues. Organic catalysts and Sn(Oct)2 often used for the ring-opening polymerization (ROP) of ε-caprolactone (CL) have been explored to find the conditions for the formation of polymeric products of gCCLs. We confirmed the consumption of gCCLs in all catalyzed reactions. However, chain propagation hardly occurs, as the propagating species are preferentially transformed to α-substituted five-membered lactones when the substituents are linked by ester or not sterically hindered. Intramolecular cyclization to form thermodynamically stable five-membered lactones releases alcohols and amines, serving as nucleophiles for the subsequent ring opening of other gCCLs. Thus, apparent chain reactions are realized for continuous consumption of gCCLs. The reaction preference remains unchanged independent of the catalysts, although the reactions of the amide-linked gCCLs by acidic catalysts are slightly mitigated. Finally, copolymerization of CL and a gCCL catalyzed by diphenyl phosphate has been investigated, which enables the chain propagation reaction to yield the linear oligomers of PCL analogues containing up to 16 mol% of gCCL units. This study contributes to understanding the chemistry of ring-opening reactions of substituted lactones for designing functional degradable polymers.
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Affiliation(s)
- Takayuki Ota
- Graduate School of Science and Engineering, Yamagata University Yamagata 992-8510 Japan
| | - Valentina Montagna
- Graduate School of Organic Materials Science, Yamagata University 4-3-16 Jonan Yonezawa Yamagata 992-8510 Japan
- POLYMAT, University of the Basque Country UPV/EHU, Joxe Mari Korta Center Avda. Tolosa 72 20018 Donostia-San Sebastian Spain
| | - Yuji Higuchi
- Research Institute for Information Technology, Kyushu University 744 Motooka, Nishi-ku Fukuoka 819-0395 Japan
| | - Takashi Kato
- Department of Chemistry and Biotechnology, School of Engineering, The University of Tokyo 7-3-1 Hongo Bunkyo-ku Tokyo 113-8656 Japan
| | - Masaru Tanaka
- Institute for Materials Chemistry and Engineering, Kyushu University 744 Motooka, Nishi-ku Fukuoka 819-0395 Japan
| | - Haritz Sardon
- POLYMAT, University of the Basque Country UPV/EHU, Joxe Mari Korta Center Avda. Tolosa 72 20018 Donostia-San Sebastian Spain
| | - Kazuki Fukushima
- Graduate School of Organic Materials Science, Yamagata University 4-3-16 Jonan Yonezawa Yamagata 992-8510 Japan
- Department of Chemistry and Biotechnology, School of Engineering, The University of Tokyo 7-3-1 Hongo Bunkyo-ku Tokyo 113-8656 Japan
- Japan Science and Technology Agency (JST), PRESTO 4-1-8 Honcho, Kawaguchi Saitama 332-0012 Japan
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49
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Yokoyama D, Takamura A, Tsuboi Y, Kikuchi J. Large-scale omics dataset of polymer degradation provides robust interpretation for microbial niche and succession on different plastisphere. ISME COMMUNICATIONS 2023; 3:67. [PMID: 37400632 PMCID: PMC10317964 DOI: 10.1038/s43705-023-00275-z] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Revised: 05/29/2023] [Accepted: 06/21/2023] [Indexed: 07/05/2023]
Abstract
While biodegradable polymers have received increased attention due to the recent marine plastic problem, few studies have compared microbiomes and their degradation processes among biodegradable polymers. In this study, we set up prompt evaluation systems for polymer degradation, allowing us to collect 418 microbiome and 125 metabolome samples to clarify the microbiome and metabolome differences according to degradation progress and polymer material (polycaprolactone [PCL], polybutylene succinate-co-adipate [PBSA], polybutylene succinate [PBS], polybutylene adipate-co-terephthalate [PBAT], and poly(3-hydroxybutyrate-co-3-hydroxyhexanoate) [PHBH]). The microbial community compositions were converged to each polymer material, and the largest differences were observed between PHBH and other polymers. Such gaps were probably formed primarily by the presence of specific hydrolase genes (i.e., 3HB depolymerase, lipase, and cutinase) in the microorganisms. Time-series sampling suggested several steps for microbial succession: (1) initial microbes decrease abruptly after incubation starts; (2) microbes, including polymer degraders, increase soon after the start of incubation and show an intermediate peak; (3) microbes, including biofilm constructers, increase their abundance gradually. Metagenome prediction showed functional changes, where free-swimming microbes with flagella adhered stochastically onto the polymer, and certain microbes started to construct a biofilm. Our large-dataset-based results provide robust interpretations for biodegradable polymer degradation.
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Affiliation(s)
- Daiki Yokoyama
- RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
- Graduate School of Medical Life Science, Yokohama City University, 1-7-29 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
| | - Ayari Takamura
- RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
| | - Yuuri Tsuboi
- RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
| | - Jun Kikuchi
- RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan.
- Graduate School of Medical Life Science, Yokohama City University, 1-7-29 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan.
- Graduate School of Bioagricultural Sciences, Nagoya University, 1 Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-0810, Japan.
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Pooja N, Chakraborty I, Rahman MH, Mazumder N. An insight on sources and biodegradation of bioplastics: a review. 3 Biotech 2023; 13:220. [PMID: 37265543 PMCID: PMC10230146 DOI: 10.1007/s13205-023-03638-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2022] [Accepted: 05/15/2023] [Indexed: 06/03/2023] Open
Abstract
Durability and affordability are two main reasons for the widespread consumption of plastic in the world. However, the inability of these materials to undergo degradation has become a significant threat to the environment and human health To address this issue, bioplastics have emerged as a promising alternative. Bioplastics are obtained from renewable and sustainable biomass and have a lower carbon footprint and emit fewer greenhouse gases than petroleum-based plastics. The use of these bioplastics sourced from renewable biomass can also reduce the dependency on fossil fuels, which are limited in availability. This review provides an elaborate comparison of biodegradation rates of potential bioplastics in soil from various sources such as biomass, microorganisms, and monomers. These bioplastics show great potential as a replacement for conventional plastics due to their biodegradable and diverse properties.
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Affiliation(s)
- Nag Pooja
- Department of Biophysics, Manipal School of Life Sciences, Manipal Academy of Higher Education, Manipal, Karnataka 576104 India
| | - Ishita Chakraborty
- Department of Biophysics, Manipal School of Life Sciences, Manipal Academy of Higher Education, Manipal, Karnataka 576104 India
| | - Md. Hafizur Rahman
- Department of Quality Control and Safety Management, Faculty of Food Sciences and Safety, Khulna Agricultural University, Khulna, Bangladesh
| | - Nirmal Mazumder
- Department of Biophysics, Manipal School of Life Sciences, Manipal Academy of Higher Education, Manipal, Karnataka 576104 India
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