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For: Nielsen AAK, Voigt CA. Deep learning to predict the lab-of-origin of engineered DNA. Nat Commun 2018;9:3135. [PMID: 30087331 PMCID: PMC6081423 DOI: 10.1038/s41467-018-05378-z] [Citation(s) in RCA: 39] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2017] [Accepted: 06/28/2018] [Indexed: 12/26/2022]  Open
Number Cited by Other Article(s)
1
Lea-Smith DJ, Hassard F, Coulon F, Partridge N, Horsfall L, Parker KDJ, Smith RDJ, McCarthy RR, McKew B, Gutierrez T, Kumar V, Dotro G, Yang Z, Krasnogor N. Engineering biology applications for environmental solutions: potential and challenges. Nat Commun 2025;16:3538. [PMID: 40229265 PMCID: PMC11997111 DOI: 10.1038/s41467-025-58492-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2024] [Accepted: 03/24/2025] [Indexed: 04/16/2025]  Open
2
Mo W, Vaiana CA, Myers CJ. The need for adaptability in detection, characterization, and attribution of biosecurity threats. Nat Commun 2024;15:10699. [PMID: 39702312 PMCID: PMC11659417 DOI: 10.1038/s41467-024-55436-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2024] [Accepted: 12/12/2024] [Indexed: 12/21/2024]  Open
3
Berezin CT, Peccoud S, Kar DM, Peccoud J. Cryptographic approaches to authenticating synthetic DNA sequences. Trends Biotechnol 2024;42:1002-1016. [PMID: 38418329 PMCID: PMC11309913 DOI: 10.1016/j.tibtech.2024.02.002] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2023] [Revised: 02/01/2024] [Accepted: 02/02/2024] [Indexed: 03/01/2024]
4
Tay AP, Didi K, Wickramarachchi A, Bauer DC, Wilson LOW, Maselko M. Synsor: a tool for alignment-free detection of engineered DNA sequences. Front Bioeng Biotechnol 2024;12:1375626. [PMID: 39070163 PMCID: PMC11272466 DOI: 10.3389/fbioe.2024.1375626] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2024] [Accepted: 06/18/2024] [Indexed: 07/30/2024]  Open
5
Adler A, Bader JS, Basnight B, Booth BW, Cai J, Cho E, Collins JH, Ge Y, Grothendieck J, Keating K, Marshall T, Persikov A, Scott H, Siegelmann R, Singh M, Taggart A, Toll B, Wan KH, Wyschogrod D, Yaman F, Young EM, Celniker SE, Roehner N. Ensemble Detection of DNA Engineering Signatures. ACS Synth Biol 2024;13:1105-1115. [PMID: 38468602 DOI: 10.1021/acssynbio.3c00398] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/13/2024]
6
Wijethilake N, Anandakumar M, Zheng C, So PTC, Yildirim M, Wadduwage DN. DEEP-squared: deep learning powered De-scattering with Excitation Patterning. LIGHT, SCIENCE & APPLICATIONS 2023;12:228. [PMID: 37704619 PMCID: PMC10499829 DOI: 10.1038/s41377-023-01248-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2023] [Revised: 07/21/2023] [Accepted: 07/29/2023] [Indexed: 09/15/2023]
7
Spirgel R, Comolli J, Guido NJ. A Machine Learning Method for Genome Engineering Design Tool Attribution. Health Secur 2023;21:407-414. [PMID: 37594776 DOI: 10.1089/hs.2022.0152] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/19/2023]  Open
8
Zhang C, Liu H, Li X, Xu F, Li Z. Modularized synthetic biology enabled intelligent biosensors. Trends Biotechnol 2023;41:1055-1065. [PMID: 36967259 DOI: 10.1016/j.tibtech.2023.03.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2022] [Revised: 02/27/2023] [Accepted: 03/06/2023] [Indexed: 03/29/2023]
9
Wei Z, Boivin JR, Xue Y, Burnell K, Wijethilake N, Chen X, So PTC, Nedivi E, Wadduwage DN. De-scattering Deep Neural Network Enables Fast Imaging of Spines through Scattering Media by Temporal Focusing Microscopy. RESEARCH SQUARE 2023:rs.3.rs-2410214. [PMID: 37333305 PMCID: PMC10275030 DOI: 10.21203/rs.3.rs-2410214/v1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/20/2023]
10
Ding N, Zhang G, Zhang L, Shen Z, Yin L, Zhou S, Deng Y. Engineering an AI-based forward-reverse platform for the design of cross-ribosome binding sites of a transcription factor biosensor. Comput Struct Biotechnol J 2023;21:2929-2939. [PMID: 38213883 PMCID: PMC10781712 DOI: 10.1016/j.csbj.2023.04.026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2023] [Revised: 04/26/2023] [Accepted: 04/26/2023] [Indexed: 01/13/2024]  Open
11
Thanikkal JG, Dubey AK, Thomas MT. An Efficient Mobile Application for Identification of Immunity Boosting Medicinal Plants using Shape Descriptor Algorithm. WIRELESS PERSONAL COMMUNICATIONS 2023;131:1-17. [PMID: 37360141 PMCID: PMC10119011 DOI: 10.1007/s11277-023-10476-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Accepted: 04/12/2023] [Indexed: 06/28/2023]
12
McGuffie MJ, Barrick JE. Identifying widespread and recurrent variants of genetic parts to improve annotation of engineered DNA sequences. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.04.10.536277. [PMID: 37090600 PMCID: PMC10120640 DOI: 10.1101/2023.04.10.536277] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/25/2023]
13
Ge F, Yu Z, Li Y, Zhu M, Zhang B, Zhang Q, Harrison RM, Chen L. Predicting aviation non-volatile particulate matter emissions at cruise via convolutional neural network. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022;850:158089. [PMID: 35985597 DOI: 10.1016/j.scitotenv.2022.158089] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2022] [Revised: 07/25/2022] [Accepted: 08/13/2022] [Indexed: 06/15/2023]
14
Crook OM, Warmbrod KL, Lipstein G, Chung C, Bakerlee CW, McKelvey TG, Holland SR, Swett JL, Esvelt KM, Alley EC, Bradshaw WJ. Analysis of the first genetic engineering attribution challenge. Nat Commun 2022;13:7374. [PMID: 36450726 PMCID: PMC9712580 DOI: 10.1038/s41467-022-35032-8] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Accepted: 11/16/2022] [Indexed: 12/03/2022]  Open
15
Chandler M, Jain S, Halman J, Hong E, Dobrovolskaia MA, Zakharov AV, Afonin KA. Artificial Immune Cell, AI-cell, a New Tool to Predict Interferon Production by Peripheral Blood Monocytes in Response to Nucleic Acid Nanoparticles. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2022;18:e2204941. [PMID: 36216772 PMCID: PMC9671856 DOI: 10.1002/smll.202204941] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Revised: 09/15/2022] [Indexed: 06/16/2023]
16
Tsimenidis S, Vrochidou E, Papakostas GA. Omics Data and Data Representations for Deep Learning-Based Predictive Modeling. Int J Mol Sci 2022;23:12272. [PMID: 36293133 PMCID: PMC9603455 DOI: 10.3390/ijms232012272] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2022] [Revised: 10/03/2022] [Accepted: 10/12/2022] [Indexed: 11/25/2022]  Open
17
Routhier E, Mozziconacci J. Genomics enters the deep learning era. PeerJ 2022;10:e13613. [PMID: 35769139 PMCID: PMC9235815 DOI: 10.7717/peerj.13613] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2022] [Accepted: 05/30/2022] [Indexed: 01/17/2023]  Open
18
Using metric learning to identify the lab-of-origin of engineered DNA. NATURE COMPUTATIONAL SCIENCE 2022;2:296-297. [PMID: 38177813 DOI: 10.1038/s43588-022-00240-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/06/2024]
19
Soares IM, Camargo FHF, Marques A, Crook OM. Improving lab-of-origin prediction of genetically engineered plasmids via deep metric learning. NATURE COMPUTATIONAL SCIENCE 2022;2:253-264. [PMID: 38177551 DOI: 10.1038/s43588-022-00234-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2021] [Accepted: 03/22/2022] [Indexed: 01/06/2024]
20
Sapoval N, Aghazadeh A, Nute MG, Antunes DA, Balaji A, Baraniuk R, Barberan CJ, Dannenfelser R, Dun C, Edrisi M, Elworth RAL, Kille B, Kyrillidis A, Nakhleh L, Wolfe CR, Yan Z, Yao V, Treangen TJ. Current progress and open challenges for applying deep learning across the biosciences. Nat Commun 2022;13:1728. [PMID: 35365602 PMCID: PMC8976012 DOI: 10.1038/s41467-022-29268-7] [Citation(s) in RCA: 112] [Impact Index Per Article: 37.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2021] [Accepted: 03/09/2022] [Indexed: 11/19/2022]  Open
21
Singer JM, Novotney S, Strickland D, Haddox HK, Leiby N, Rocklin GJ, Chow CM, Roy A, Bera AK, Motta FC, Cao L, Strauch EM, Chidyausiku TM, Ford A, Ho E, Zaitzeff A, Mackenzie CO, Eramian H, DiMaio F, Grigoryan G, Vaughn M, Stewart LJ, Baker D, Klavins E. Large-scale design and refinement of stable proteins using sequence-only models. PLoS One 2022;17:e0265020. [PMID: 35286324 PMCID: PMC8920274 DOI: 10.1371/journal.pone.0265020] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Accepted: 02/18/2022] [Indexed: 12/25/2022]  Open
22
Lee BD, Gitter A, Greene CS, Raschka S, Maguire F, Titus AJ, Kessler MD, Lee AJ, Chevrette MG, Stewart PA, Britto-Borges T, Cofer EM, Yu KH, Carmona JJ, Fertig EJ, Kalinin AA, Signal B, Lengerich BJ, Triche TJ, Boca SM. Ten quick tips for deep learning in biology. PLoS Comput Biol 2022;18:e1009803. [PMID: 35324884 PMCID: PMC8946751 DOI: 10.1371/journal.pcbi.1009803] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/05/2022]  Open
23
Montesinos-López OA, Montesinos-López A, Hernandez-Suarez CM, Barrón-López JA, Crossa J. Deep-learning power and perspectives for genomic selection. THE PLANT GENOME 2021;14:e20122. [PMID: 34309215 DOI: 10.1002/tpg2.20122] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2021] [Accepted: 05/24/2021] [Indexed: 06/13/2023]
24
Kim J, Kim D, Sohn KA. HiG2Vec: hierarchical representations of Gene Ontology and genes in the Poincaré ball. Bioinformatics 2021;37:2971-2980. [PMID: 33760022 DOI: 10.1093/bioinformatics/btab193] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2020] [Revised: 03/14/2021] [Accepted: 03/23/2021] [Indexed: 02/02/2023]  Open
25
Bartoszewicz JM, Genske U, Renard BY. Deep learning-based real-time detection of novel pathogens during sequencing. Brief Bioinform 2021;22:6326527. [PMID: 34297793 DOI: 10.1093/bib/bbab269] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2021] [Revised: 06/09/2021] [Accepted: 06/23/2021] [Indexed: 11/12/2022]  Open
26
In silico, in vitro, and in vivo machine learning in synthetic biology and metabolic engineering. Curr Opin Chem Biol 2021;65:85-92. [PMID: 34280705 DOI: 10.1016/j.cbpa.2021.06.002] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2021] [Revised: 05/31/2021] [Accepted: 06/01/2021] [Indexed: 01/29/2023]
27
Development of a growth coupled and multi-layered dynamic regulation network balancing malonyl-CoA node to enhance (2S)-naringenin biosynthesis in Escherichia coli. Metab Eng 2021;67:41-52. [PMID: 34052445 DOI: 10.1016/j.ymben.2021.05.007] [Citation(s) in RCA: 66] [Impact Index Per Article: 16.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2021] [Revised: 04/29/2021] [Accepted: 05/21/2021] [Indexed: 02/07/2023]
28
Zhang Z, van Dijk F, de Klein N, van Gijn ME, Franke LH, Sinke RJ, Swertz MA, van der Velde KJ. Feasibility of predicting allele specific expression from DNA sequencing using machine learning. Sci Rep 2021;11:10606. [PMID: 34012022 PMCID: PMC8134421 DOI: 10.1038/s41598-021-89904-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2021] [Accepted: 05/04/2021] [Indexed: 11/09/2022]  Open
29
Parker MT, Kunjapur AM. Deployment of Engineered Microbes: Contributions to the Bioeconomy and Considerations for Biosecurity. Health Secur 2021;18:278-296. [PMID: 32816583 DOI: 10.1089/hs.2020.0010] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]  Open
30
Early forecasting of tsunami inundation from tsunami and geodetic observation data with convolutional neural networks. Nat Commun 2021;12:2253. [PMID: 33859177 PMCID: PMC8050057 DOI: 10.1038/s41467-021-22348-0] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2020] [Accepted: 03/03/2021] [Indexed: 11/18/2022]  Open
31
Suh Y, Bostanabad R, Won Y. Deep learning predicts boiling heat transfer. Sci Rep 2021;11:5622. [PMID: 33692489 PMCID: PMC7970936 DOI: 10.1038/s41598-021-85150-4] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2020] [Accepted: 02/15/2021] [Indexed: 01/17/2023]  Open
32
Wang Q, Kille B, Liu TR, Elworth RAL, Treangen TJ. PlasmidHawk improves lab of origin prediction of engineered plasmids using sequence alignment. Nat Commun 2021;12:1167. [PMID: 33637701 PMCID: PMC7910462 DOI: 10.1038/s41467-021-21180-w] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2020] [Accepted: 01/12/2021] [Indexed: 12/26/2022]  Open
33
Lewis G, Jordan JL, Relman DA, Koblentz GD, Leung J, Dafoe A, Nelson C, Epstein GL, Katz R, Montague M, Alley EC, Filone CM, Luby S, Church GM, Millett P, Esvelt KM, Cameron EE, Inglesby TV. The biosecurity benefits of genetic engineering attribution. Nat Commun 2020;11:6294. [PMID: 33293537 PMCID: PMC7722838 DOI: 10.1038/s41467-020-19149-2] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2020] [Accepted: 09/28/2020] [Indexed: 11/23/2022]  Open
34
A machine learning toolkit for genetic engineering attribution to facilitate biosecurity. Nat Commun 2020;11:6293. [PMID: 33293535 PMCID: PMC7722865 DOI: 10.1038/s41467-020-19612-0] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2020] [Accepted: 10/05/2020] [Indexed: 12/21/2022]  Open
35
Ding N, Yuan Z, Zhang X, Chen J, Zhou S, Deng Y. Programmable cross-ribosome-binding sites to fine-tune the dynamic range of transcription factor-based biosensor. Nucleic Acids Res 2020;48:10602-10613. [PMID: 32976557 PMCID: PMC7544201 DOI: 10.1093/nar/gkaa786] [Citation(s) in RCA: 71] [Impact Index Per Article: 14.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2020] [Revised: 08/20/2020] [Accepted: 09/09/2020] [Indexed: 11/24/2022]  Open
36
Application of deep learning in genomics. SCIENCE CHINA-LIFE SCIENCES 2020;63:1860-1878. [PMID: 33051704 DOI: 10.1007/s11427-020-1804-5] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2020] [Accepted: 08/15/2020] [Indexed: 12/19/2022]
37
Bartoszewicz JM, Seidel A, Rentzsch R, Renard BY. DeePaC: predicting pathogenic potential of novel DNA with reverse-complement neural networks. Bioinformatics 2020;36:81-89. [PMID: 31298694 DOI: 10.1093/bioinformatics/btz541] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2019] [Revised: 06/22/2019] [Accepted: 07/10/2019] [Indexed: 12/31/2022]  Open
38
Kar DM, Ray I, Gallegos J, Peccoud J, Ray I. Synthesizing DNA molecules with identity-based digital signatures to prevent malicious tampering and enabling source attribution. JOURNAL OF COMPUTER SECURITY 2020. [DOI: 10.3233/jcs-191383] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
39
Yuan Y, Ma G, Cheng C, Zhou B, Zhao H, Zhang HT, Ding H. A general end-to-end diagnosis framework for manufacturing systems. Natl Sci Rev 2020;7:418-429. [PMID: 34692057 PMCID: PMC8289032 DOI: 10.1093/nsr/nwz190] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2019] [Revised: 10/20/2019] [Accepted: 11/03/2019] [Indexed: 11/13/2022]  Open
40
MacIntyre CR, Adam DC, Turner R, Chughtai AA, Engells T. Public awareness, acceptability and risk perception about infectious diseases dual-use research of concern: a cross-sectional survey. BMJ Open 2020;10:e029134. [PMID: 31911509 PMCID: PMC6955500 DOI: 10.1136/bmjopen-2019-029134] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/15/2019] [Revised: 10/25/2019] [Accepted: 10/25/2019] [Indexed: 11/23/2022]  Open
41
de Los Santos ELC. NeuRiPP: Neural network identification of RiPP precursor peptides. Sci Rep 2019;9:13406. [PMID: 31527713 PMCID: PMC6746993 DOI: 10.1038/s41598-019-49764-z] [Citation(s) in RCA: 50] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2019] [Accepted: 08/30/2019] [Indexed: 01/29/2023]  Open
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