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For: Wang DR, Agosto-Pérez FJ, Chebotarov D, Shi Y, Marchini J, Fitzgerald M, McNally KL, Alexandrov N, McCouch SR. An imputation platform to enhance integration of rice genetic resources. Nat Commun 2018;9:3519. [PMID: 30158584 PMCID: PMC6115364 DOI: 10.1038/s41467-018-05538-1] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2017] [Accepted: 07/05/2018] [Indexed: 12/22/2022]  Open
Number Cited by Other Article(s)
1
de Ocampo MP, Tam BP, Egdane JA, Chebotarov D, Doi K, Yamauchi A, Ismail AM, Henry A, Mitsuya S. Leaf Na+ effects and multi-trait GWAS point to salt exclusion as the key mechanism for reproductive stage salinity tolerance in rice. ANNALS OF BOTANY 2025;135:949-962. [PMID: 39731213 PMCID: PMC12064422 DOI: 10.1093/aob/mcae227] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/22/2024] [Accepted: 12/26/2024] [Indexed: 12/29/2024]
2
Zhao H, MacLeod IM, Keeble-Gagnere G, Barbulescu DM, Tibbits JF, Kaur S, Hayden M. Using genotype imputation to integrate Canola populations for genome-wide association and genomic prediction of blackleg resistance. BMC Genomics 2025;26:215. [PMID: 40038585 PMCID: PMC11877698 DOI: 10.1186/s12864-025-11250-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2024] [Accepted: 01/16/2025] [Indexed: 03/06/2025]  Open
3
Zhu M, Yong K, Xu K, Cong J, Zhou X, Liu K, Wang X, Fan L, Olsen KM, Huang X, Zhou X, Qiu J. Landrace introgression contributed to the recent feralization of weedy rice in East China. PLANT COMMUNICATIONS 2024;5:101066. [PMID: 39169627 PMCID: PMC11589283 DOI: 10.1016/j.xplc.2024.101066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2024] [Revised: 07/25/2024] [Accepted: 08/18/2024] [Indexed: 08/23/2024]
4
Sivabharathi RC, Rajagopalan VR, Suresh R, Sudha M, Karthikeyan G, Jayakanthan M, Raveendran M. Haplotype-based breeding: A new insight in crop improvement. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2024;346:112129. [PMID: 38763472 DOI: 10.1016/j.plantsci.2024.112129] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2024] [Revised: 05/09/2024] [Accepted: 05/15/2024] [Indexed: 05/21/2024]
5
Wei X, Chen M, Zhang Q, Gong J, Liu J, Yong K, Wang Q, Fan J, Chen S, Hua H, Luo Z, Zhao X, Wang X, Li W, Cong J, Yu X, Wang Z, Huang R, Chen J, Zhou X, Qiu J, Xu P, Murray J, Wang H, Xu Y, Xu C, Xu G, Yang J, Han B, Huang X. Genomic investigation of 18,421 lines reveals the genetic architecture of rice. Science 2024;385:eadm8762. [PMID: 38963845 DOI: 10.1126/science.adm8762] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2023] [Accepted: 04/29/2024] [Indexed: 07/06/2024]
6
Zhou Y, Kathiresan N, Yu Z, Rivera LF, Yang Y, Thimma M, Manickam K, Chebotarov D, Mauleon R, Chougule K, Wei S, Gao T, Green CD, Zuccolo A, Xie W, Ware D, Zhang J, McNally KL, Wing RA. A high-performance computational workflow to accelerate GATK SNP detection across a 25-genome dataset. BMC Biol 2024;22:13. [PMID: 38273258 PMCID: PMC10809545 DOI: 10.1186/s12915-024-01820-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Accepted: 01/09/2024] [Indexed: 01/27/2024]  Open
7
Sachdeva S, Singh R, Maurya A, Singh VK, Singh UM, Kumar A, Singh GP. Multi-model genome-wide association studies for appearance quality in rice. FRONTIERS IN PLANT SCIENCE 2024;14:1304388. [PMID: 38273959 PMCID: PMC10808671 DOI: 10.3389/fpls.2023.1304388] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/29/2023] [Accepted: 12/22/2023] [Indexed: 01/27/2024]
8
Schläppi MR, Jessel AR, Jackson AK, Phan H, Jia MH, Edwards JD, Eizenga GC. Navigating rice seedling cold resilience: QTL mapping in two inbred line populations and the search for genes. FRONTIERS IN PLANT SCIENCE 2023;14:1303651. [PMID: 38162313 PMCID: PMC10755946 DOI: 10.3389/fpls.2023.1303651] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Accepted: 11/20/2023] [Indexed: 01/03/2024]
9
Sakhale SA, Yadav S, Clark LV, Lipka AE, Kumar A, Sacks EJ. Genome-wide association analysis for emergence of deeply sown rice (Oryza sativa) reveals novel aus-specific phytohormone candidate genes for adaptation to dry-direct seeding in the field. FRONTIERS IN PLANT SCIENCE 2023;14:1172816. [PMID: 37377815 PMCID: PMC10291202 DOI: 10.3389/fpls.2023.1172816] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Accepted: 05/23/2023] [Indexed: 06/29/2023]
10
Beye A, Billot C, Ronfort J, McNally KL, Diouf D, Glaszmann JC. Traces of Introgression from cAus into Tropical Japonica Observed in African Upland Rice Varieties. RICE (NEW YORK, N.Y.) 2023;16:12. [PMID: 36853402 PMCID: PMC9975138 DOI: 10.1186/s12284-023-00625-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Accepted: 02/08/2023] [Indexed: 06/18/2023]
11
Hanlon MT, Vejchasarn P, Fonta JE, Schneider HM, McCouch SR, Brown KM. Genome wide association analysis of root hair traits in rice reveals novel genomic regions controlling epidermal cell differentiation. BMC PLANT BIOLOGY 2023;23:6. [PMID: 36597029 PMCID: PMC9811729 DOI: 10.1186/s12870-022-04026-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Accepted: 12/22/2022] [Indexed: 06/17/2023]
12
Barrero LS, Willmann MR, Craft EJ, Akther KM, Harrington SE, Garzon‐Martinez GA, Glahn RP, Piñeros MA, McCouch SR. Identifying genes associated with abiotic stress tolerance suitable for CRISPR/Cas9 editing in upland rice cultivars adapted to acid soils. PLANT DIRECT 2022;6:e469. [PMID: 36514785 PMCID: PMC9737570 DOI: 10.1002/pld3.469] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/23/2022] [Revised: 11/07/2022] [Accepted: 11/08/2022] [Indexed: 06/17/2023]
13
Huang YH, Ku HM, Wang CA, Chen LY, He SS, Chen S, Liao PC, Juan PY, Kao CF. A multiple phenotype imputation method for genetic diversity and core collection in Taiwanese vegetable soybean. FRONTIERS IN PLANT SCIENCE 2022;13:948349. [PMID: 36119593 PMCID: PMC9480828 DOI: 10.3389/fpls.2022.948349] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Accepted: 07/25/2022] [Indexed: 06/15/2023]
14
Deep polygenic neural network for predicting and identifying yield-associated genes in Indonesian rice accessions. Sci Rep 2022;12:13823. [PMID: 35970979 PMCID: PMC9378700 DOI: 10.1038/s41598-022-16075-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Accepted: 07/04/2022] [Indexed: 11/12/2022]  Open
15
Li D, Zhang F, Pinson SRM, Edwards JD, Jackson AK, Xia X, Eizenga GC. Assessment of Rice Sheath Blight Resistance Including Associations with Plant Architecture, as Revealed by Genome-Wide Association Studies. RICE (NEW YORK, N.Y.) 2022;15:31. [PMID: 35716230 PMCID: PMC9206596 DOI: 10.1186/s12284-022-00574-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/14/2021] [Accepted: 05/13/2022] [Indexed: 06/15/2023]
16
Wang X, Li J, Sun J, Gu S, Wang J, Su C, Li Y, Ma D, Zhao M, Chen W. Mining Beneficial Genes for Salt Tolerance From a Core Collection of Rice Landraces at the Seedling Stage Through Genome-Wide Association Mapping. FRONTIERS IN PLANT SCIENCE 2022;13:847863. [PMID: 35557725 PMCID: PMC9087808 DOI: 10.3389/fpls.2022.847863] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/03/2022] [Accepted: 04/08/2022] [Indexed: 06/15/2023]
17
Wu D, Qiu J, Sun J, Song BK, Olsen KM, Fan L. Weedy rice, a hidden gold mine in the paddy field. MOLECULAR PLANT 2022;15:566-568. [PMID: 35032686 DOI: 10.1016/j.molp.2022.01.008] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2021] [Revised: 01/10/2022] [Accepted: 01/11/2022] [Indexed: 06/14/2023]
18
Bartholomé J, Prakash PT, Cobb JN. Genomic Prediction: Progress and Perspectives for Rice Improvement. Methods Mol Biol 2022;2467:569-617. [PMID: 35451791 DOI: 10.1007/978-1-0716-2205-6_21] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
19
Joukhadar R, Daetwyler HD. Data Integration, Imputation, and Meta-analysis for Genome-Wide Association Studies. Methods Mol Biol 2022;2481:173-183. [PMID: 35641765 DOI: 10.1007/978-1-0716-2237-7_11] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
20
Chen R, Deng Y, Ding Y, Guo J, Qiu J, Wang B, Wang C, Xie Y, Zhang Z, Chen J, Chen L, Chu C, He G, He Z, Huang X, Xing Y, Yang S, Xie D, Liu Y, Li J. Rice functional genomics: decades' efforts and roads ahead. SCIENCE CHINA. LIFE SCIENCES 2022. [PMID: 34881420 DOI: 10.1007/s11427-021-2024-2020] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 04/28/2023]
21
Rice functional genomics: decades' efforts and roads ahead. SCIENCE CHINA. LIFE SCIENCES 2021;65:33-92. [PMID: 34881420 DOI: 10.1007/s11427-021-2024-0] [Citation(s) in RCA: 125] [Impact Index Per Article: 31.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Accepted: 11/01/2021] [Indexed: 12/16/2022]
22
Iqbal Z, Iqbal MS, Khan MIR, Ansari MI. Toward Integrated Multi-Omics Intervention: Rice Trait Improvement and Stress Management. FRONTIERS IN PLANT SCIENCE 2021;12:741419. [PMID: 34721467 PMCID: PMC8554098 DOI: 10.3389/fpls.2021.741419] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2021] [Accepted: 09/20/2021] [Indexed: 05/04/2023]
23
A high-resolution genome-wide association study of the grain ionome and agronomic traits in rice Oryza sativa subsp. indica. Sci Rep 2021;11:19230. [PMID: 34584121 PMCID: PMC8478900 DOI: 10.1038/s41598-021-98573-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2021] [Accepted: 09/09/2021] [Indexed: 02/08/2023]  Open
24
Castano-Duque L, Ghosal S, Quilloy FA, Mitchell-Olds T, Dixit S. An epigenetic pathway in rice connects genetic variation to anaerobic germination and seedling establishment. PLANT PHYSIOLOGY 2021;186:1042-1059. [PMID: 33638990 PMCID: PMC8195528 DOI: 10.1093/plphys/kiab100] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/16/2020] [Accepted: 02/09/2021] [Indexed: 06/12/2023]
25
Mason GA. Growing under water: DNA methylation may affect rice germination and establishment in anaerobic conditions. PLANT PHYSIOLOGY 2021;186:824-826. [PMID: 33823033 PMCID: PMC8195502 DOI: 10.1093/plphys/kiab137] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2021] [Accepted: 03/12/2021] [Indexed: 06/12/2023]
26
Kumar P, Choudhary M, Jat BS, Kumar B, Singh V, Kumar V, Singla D, Rakshit S. Skim sequencing: an advanced NGS technology for crop improvement. J Genet 2021. [DOI: 10.1007/s12041-021-01285-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
27
Yu H, Du Q, Campbell M, Yu B, Walia H, Zhang C. Genome-wide discovery of natural variation in pre-mRNA splicing and prioritising causal alternative splicing to salt stress response in rice. THE NEW PHYTOLOGIST 2021;230:1273-1287. [PMID: 33453070 PMCID: PMC8048671 DOI: 10.1111/nph.17189] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/13/2020] [Accepted: 01/04/2021] [Indexed: 05/14/2023]
28
Ruang-Areerate P, Travis AJ, Pinson SRM, Tarpley L, Eizenga GC, Guerinot ML, Salt DE, Douglas A, Price AH, Norton GJ. Genome-wide association mapping for grain manganese in rice (Oryza sativa L.) using a multi-experiment approach. Heredity (Edinb) 2021;126:505-520. [PMID: 33235293 PMCID: PMC8026592 DOI: 10.1038/s41437-020-00390-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2020] [Revised: 11/06/2020] [Accepted: 11/06/2020] [Indexed: 11/09/2022]  Open
29
Wei X, Qiu J, Yong K, Fan J, Zhang Q, Hua H, Liu J, Wang Q, Olsen KM, Han B, Huang X. A quantitative genomics map of rice provides genetic insights and guides breeding. Nat Genet 2021;53:243-253. [PMID: 33526925 DOI: 10.1038/s41588-020-00769-9] [Citation(s) in RCA: 123] [Impact Index Per Article: 30.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Accepted: 12/11/2020] [Indexed: 02/07/2023]
30
Torkamaneh D, Laroche J, Valliyodan B, O'Donoughue L, Cober E, Rajcan I, Vilela Abdelnoor R, Sreedasyam A, Schmutz J, Nguyen HT, Belzile F. Soybean (Glycine max) Haplotype Map (GmHapMap): a universal resource for soybean translational and functional genomics. PLANT BIOTECHNOLOGY JOURNAL 2021;19:324-334. [PMID: 32794321 DOI: 10.1101/534578] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2019] [Revised: 07/24/2020] [Accepted: 08/07/2020] [Indexed: 05/27/2023]
31
Torkamaneh D, Laroche J, Valliyodan B, O’Donoughue L, Cober E, Rajcan I, Vilela Abdelnoor R, Sreedasyam A, Schmutz J, Nguyen HT, Belzile F. Soybean (Glycine max) Haplotype Map (GmHapMap): a universal resource for soybean translational and functional genomics. PLANT BIOTECHNOLOGY JOURNAL 2021;19:324-334. [PMID: 32794321 PMCID: PMC7868971 DOI: 10.1111/pbi.13466] [Citation(s) in RCA: 42] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/02/2019] [Revised: 07/24/2020] [Accepted: 08/07/2020] [Indexed: 05/10/2023]
32
Gao Y, Yang Z, Yang W, Yang Y, Gong J, Yang QY, Niu X. Plant-ImputeDB: an integrated multiple plant reference panel database for genotype imputation. Nucleic Acids Res 2021;49:D1480-D1488. [PMID: 33137192 PMCID: PMC7779032 DOI: 10.1093/nar/gkaa953] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2020] [Revised: 09/23/2020] [Accepted: 10/08/2020] [Indexed: 12/21/2022]  Open
33
Kim MS, Lozano R, Kim JH, Bae DN, Kim ST, Park JH, Choi MS, Kim J, Ok HC, Park SK, Gore MA, Moon JK, Jeong SC. The patterns of deleterious mutations during the domestication of soybean. Nat Commun 2021;12:97. [PMID: 33397978 PMCID: PMC7782591 DOI: 10.1038/s41467-020-20337-3] [Citation(s) in RCA: 43] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Accepted: 11/25/2020] [Indexed: 01/29/2023]  Open
34
Al-Tamimi N, Oakey H, Tester M, Negrão S. Assessing Rice Salinity Tolerance: From Phenomics to Association Mapping. Methods Mol Biol 2021;2238:339-375. [PMID: 33471343 DOI: 10.1007/978-1-0716-1068-8_23] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
35
Campbell MT, Du Q, Liu K, Sharma S, Zhang C, Walia H. Characterization of the transcriptional divergence between the subspecies of cultivated rice (Oryza sativa). BMC Genomics 2020;21:394. [PMID: 32513103 PMCID: PMC7278148 DOI: 10.1186/s12864-020-06786-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2019] [Accepted: 05/19/2020] [Indexed: 01/24/2023]  Open
36
Wang Q, Tang J, Han B, Huang X. Advances in genome-wide association studies of complex traits in rice. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2020;133:1415-1425. [PMID: 31720701 DOI: 10.1007/s00122-019-03473-3] [Citation(s) in RCA: 51] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2019] [Accepted: 11/05/2019] [Indexed: 05/27/2023]
37
Qiu J, Jia L, Wu D, Weng X, Chen L, Sun J, Chen M, Mao L, Jiang B, Ye C, Turra GM, Guo L, Ye G, Zhu QH, Imaizumi T, Song BK, Scarabel L, Merotto A, Olsen KM, Fan L. Diverse genetic mechanisms underlie worldwide convergent rice feralization. Genome Biol 2020;21:70. [PMID: 32213201 PMCID: PMC7098168 DOI: 10.1186/s13059-020-01980-x] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2019] [Accepted: 03/02/2020] [Indexed: 11/21/2022]  Open
38
Melandri G, Prashar A, McCouch SR, van der Linden G, Jones HG, Kadam N, Jagadish K, Bouwmeester H, Ruyter-Spira C. Association mapping and genetic dissection of drought-induced canopy temperature differences in rice. JOURNAL OF EXPERIMENTAL BOTANY 2020;71:1614-1627. [PMID: 31846000 PMCID: PMC7031080 DOI: 10.1093/jxb/erz527] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2019] [Accepted: 12/16/2019] [Indexed: 05/07/2023]
39
Melandri G, Sikirou M, Arbelaez JD, Shittu A, Semwal VK, Konaté KA, Maji AT, Ngaujah SA, Akintayo I, Govindaraj V, Shi Y, Agosto-Peréz FJ, Greenberg AJ, Atlin G, Ramaiah V, McCouch SR. Multiple Small-Effect Alleles of Indica Origin Enhance High Iron-Associated Stress Tolerance in Rice Under Field Conditions in West Africa. FRONTIERS IN PLANT SCIENCE 2020;11:604938. [PMID: 33584748 PMCID: PMC7874229 DOI: 10.3389/fpls.2020.604938] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2020] [Accepted: 12/15/2020] [Indexed: 05/03/2023]
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Furbank RT, Jimenez-Berni JA, George-Jaeggli B, Potgieter AB, Deery DM. Field crop phenomics: enabling breeding for radiation use efficiency and biomass in cereal crops. THE NEW PHYTOLOGIST 2019;223:1714-1727. [PMID: 30937909 DOI: 10.1111/nph.15817] [Citation(s) in RCA: 86] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2018] [Accepted: 03/02/2019] [Indexed: 05/21/2023]
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Davidson H, Shrestha R, Cornulier T, Douglas A, Travis T, Johnson D, Price AH. Spatial Effects and GWA Mapping of Root Colonization Assessed in the Interaction Between the Rice Diversity Panel 1 and an Arbuscular Mycorrhizal Fungus. FRONTIERS IN PLANT SCIENCE 2019;10:633. [PMID: 31156686 PMCID: PMC6533530 DOI: 10.3389/fpls.2019.00633] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2019] [Accepted: 04/26/2019] [Indexed: 05/09/2023]
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Zhao J, Sauvage C, Zhao J, Bitton F, Bauchet G, Liu D, Huang S, Tieman DM, Klee HJ, Causse M. Meta-analysis of genome-wide association studies provides insights into genetic control of tomato flavor. Nat Commun 2019;10:1534. [PMID: 30948717 PMCID: PMC6449550 DOI: 10.1038/s41467-019-09462-w] [Citation(s) in RCA: 62] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2018] [Accepted: 03/04/2019] [Indexed: 12/30/2022]  Open
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Hong WJ, Kim YJ, Chandran AKN, Jung KH. Infrastructures of systems biology that facilitate functional genomic study in rice. RICE (NEW YORK, N.Y.) 2019;12:15. [PMID: 30874968 PMCID: PMC6419666 DOI: 10.1186/s12284-019-0276-z] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2018] [Accepted: 03/06/2019] [Indexed: 05/08/2023]
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Cobb JN, Biswas PS, Platten JD. Back to the future: revisiting MAS as a tool for modern plant breeding. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2019;132:647-667. [PMID: 30560465 PMCID: PMC6439155 DOI: 10.1007/s00122-018-3266-4] [Citation(s) in RCA: 76] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/25/2018] [Accepted: 12/07/2018] [Indexed: 05/04/2023]
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Borrill P, Harrington SA, Uauy C. Applying the latest advances in genomics and phenomics for trait discovery in polyploid wheat. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2019;97:56-72. [PMID: 30407665 PMCID: PMC6378701 DOI: 10.1111/tpj.14150] [Citation(s) in RCA: 49] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2018] [Revised: 10/23/2018] [Accepted: 10/30/2018] [Indexed: 05/10/2023]
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