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For: Trinquier J, Uguzzoni G, Pagnani A, Zamponi F, Weigt M. Efficient generative modeling of protein sequences using simple autoregressive models. Nat Commun 2021;12:5800. [PMID: 34608136 PMCID: PMC8490405 DOI: 10.1038/s41467-021-25756-4] [Citation(s) in RCA: 40] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2021] [Accepted: 08/23/2021] [Indexed: 02/08/2023]  Open
Number Cited by Other Article(s)
1
Fang Y, Fan D, Feng B, Zhu Y, Xie R, Tan X, Liu Q, Dong J, Zeng W. Harnessing advanced computational approaches to design novel antimicrobial peptides against intracellular bacterial infections. Bioact Mater 2025;50:510-524. [PMID: 40342489 PMCID: PMC12059401 DOI: 10.1016/j.bioactmat.2025.04.016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2024] [Revised: 04/06/2025] [Accepted: 04/15/2025] [Indexed: 05/11/2025]  Open
2
Tekpinar M, David L, Henry T, Carbone A. PRESCOTT: a population aware, epistatic, and structural model accurately predicts missense effects. Genome Biol 2025;26:113. [PMID: 40329382 PMCID: PMC12054230 DOI: 10.1186/s13059-025-03581-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2024] [Accepted: 04/17/2025] [Indexed: 05/08/2025]  Open
3
De Leonardis M, Pagnani A, Barrat-Charlaix P. Reconstruction of Ancestral Protein Sequences Using Autoregressive Generative Models. Mol Biol Evol 2025;42:msaf070. [PMID: 40139916 PMCID: PMC12006719 DOI: 10.1093/molbev/msaf070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2024] [Revised: 01/21/2025] [Accepted: 02/14/2025] [Indexed: 03/29/2025]  Open
4
Johnson SR, Fu X, Viknander S, Goldin C, Monaco S, Zelezniak A, Yang KK. Computational scoring and experimental evaluation of enzymes generated by neural networks. Nat Biotechnol 2025;43:396-405. [PMID: 38653796 PMCID: PMC11919684 DOI: 10.1038/s41587-024-02214-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2023] [Accepted: 03/20/2024] [Indexed: 04/25/2024]
5
Khatri K, Levy RM, Haldane A. Phylogenetic Corrections and Higher-Order Sequence Statistics in Protein Families: The Potts Model vs MSA Transformer. ARXIV 2025:arXiv:2503.00289v1. [PMID: 40365615 PMCID: PMC12073887] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 05/15/2025]
6
Caredda F, Pagnani A. Direct coupling analysis and the attention mechanism. BMC Bioinformatics 2025;26:41. [PMID: 39915710 PMCID: PMC11804077 DOI: 10.1186/s12859-025-06062-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2024] [Accepted: 01/22/2025] [Indexed: 02/09/2025]  Open
7
Hermans P, Tsishyn M, Schwersensky M, Rooman M, Pucci F. Exploring Evolution to Uncover Insights Into Protein Mutational Stability. Mol Biol Evol 2025;42:msae267. [PMID: 39786559 PMCID: PMC11721782 DOI: 10.1093/molbev/msae267] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2024] [Revised: 11/27/2024] [Accepted: 11/28/2024] [Indexed: 01/12/2025]  Open
8
Zhang Z, Wayment-Steele HK, Brixi G, Wang H, Kern D, Ovchinnikov S. Protein language models learn evolutionary statistics of interacting sequence motifs. Proc Natl Acad Sci U S A 2024;121:e2406285121. [PMID: 39467119 PMCID: PMC11551344 DOI: 10.1073/pnas.2406285121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2024] [Accepted: 09/03/2024] [Indexed: 10/30/2024]  Open
9
Nguyen VTD, Nguyen ND, Hy TS. ProteinReDiff: Complex-based ligand-binding proteins redesign by equivariant diffusion-based generative models. STRUCTURAL DYNAMICS (MELVILLE, N.Y.) 2024;11:064102. [PMID: 39629167 PMCID: PMC11614476 DOI: 10.1063/4.0000271] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/11/2024] [Accepted: 11/06/2024] [Indexed: 12/07/2024]
10
Ghio D, Dandi Y, Krzakala F, Zdeborová L. Sampling with flows, diffusion, and autoregressive neural networks from a spin-glass perspective. Proc Natl Acad Sci U S A 2024;121:e2311810121. [PMID: 38913892 PMCID: PMC11228464 DOI: 10.1073/pnas.2311810121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Accepted: 04/03/2024] [Indexed: 06/26/2024]  Open
11
Cocco S, Posani L, Monasson R. Functional effects of mutations in proteins can be predicted and interpreted by guided selection of sequence covariation information. Proc Natl Acad Sci U S A 2024;121:e2312335121. [PMID: 38889151 PMCID: PMC11214004 DOI: 10.1073/pnas.2312335121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Accepted: 04/21/2024] [Indexed: 06/20/2024]  Open
12
Calvanese F, Lambert CN, Nghe P, Zamponi F, Weigt M. Towards parsimonious generative modeling of RNA families. Nucleic Acids Res 2024;52:5465-5477. [PMID: 38661206 PMCID: PMC11162787 DOI: 10.1093/nar/gkae289] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2023] [Revised: 03/05/2024] [Accepted: 04/05/2024] [Indexed: 04/26/2024]  Open
13
Shibata M, Lin X, Onuchic JN, Yura K, Cheng RR. Residue coevolution and mutational landscape for OmpR and NarL response regulator subfamilies. Biophys J 2024;123:681-692. [PMID: 38291753 PMCID: PMC10995415 DOI: 10.1016/j.bpj.2024.01.028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2023] [Revised: 12/31/2023] [Accepted: 01/24/2024] [Indexed: 02/01/2024]  Open
14
Sumi S, Hamada M, Saito H. Deep generative design of RNA family sequences. Nat Methods 2024;21:435-443. [PMID: 38238559 DOI: 10.1038/s41592-023-02148-8] [Citation(s) in RCA: 15] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2023] [Accepted: 12/07/2023] [Indexed: 03/13/2024]
15
Chu HY, Fong JHC, Thean DGL, Zhou P, Fung FKC, Huang Y, Wong ASL. Accurate top protein variant discovery via low-N pick-and-validate machine learning. Cell Syst 2024;15:193-203.e6. [PMID: 38340729 DOI: 10.1016/j.cels.2024.01.002] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2023] [Revised: 10/11/2023] [Accepted: 01/18/2024] [Indexed: 02/12/2024]
16
Alvarez S, Nartey CM, Mercado N, de la Paz JA, Huseinbegovic T, Morcos F. In vivo functional phenotypes from a computational epistatic model of evolution. Proc Natl Acad Sci U S A 2024;121:e2308895121. [PMID: 38285950 PMCID: PMC10861889 DOI: 10.1073/pnas.2308895121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2023] [Accepted: 12/19/2023] [Indexed: 01/31/2024]  Open
17
Wu KE, Yang KK, van den Berg R, Alamdari S, Zou JY, Lu AX, Amini AP. Protein structure generation via folding diffusion. Nat Commun 2024;15:1059. [PMID: 38316764 PMCID: PMC10844308 DOI: 10.1038/s41467-024-45051-2] [Citation(s) in RCA: 31] [Impact Index Per Article: 31.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Accepted: 01/12/2024] [Indexed: 02/07/2024]  Open
18
Pucci F, Zerihun MB, Rooman M, Schug A. pycofitness-Evaluating the fitness landscape of RNA and protein sequences. Bioinformatics 2024;40:btae074. [PMID: 38335928 PMCID: PMC10881095 DOI: 10.1093/bioinformatics/btae074] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2023] [Revised: 01/25/2024] [Accepted: 02/06/2024] [Indexed: 02/12/2024]  Open
19
Fannjiang C, Listgarten J. Is Novelty Predictable? Cold Spring Harb Perspect Biol 2024;16:a041469. [PMID: 38052497 PMCID: PMC10835614 DOI: 10.1101/cshperspect.a041469] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/07/2023]
20
Min X, Yang C, Xie J, Huang Y, Liu N, Jin X, Wang T, Kong Z, Lu X, Ge S, Zhang J, Xia N. Tpgen: a language model for stable protein design with a specific topology structure. BMC Bioinformatics 2024;25:35. [PMID: 38254030 PMCID: PMC10804651 DOI: 10.1186/s12859-024-05637-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2023] [Accepted: 01/03/2024] [Indexed: 01/24/2024]  Open
21
Praljak N, Lian X, Ranganathan R, Ferguson AL. ProtWave-VAE: Integrating Autoregressive Sampling with Latent-Based Inference for Data-Driven Protein Design. ACS Synth Biol 2023;12:3544-3561. [PMID: 37988083 PMCID: PMC10911954 DOI: 10.1021/acssynbio.3c00261] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2023]
22
Barghout RA, Xu Z, Betala S, Mahadevan R. Advances in generative modeling methods and datasets to design novel enzymes for renewable chemicals and fuels. Curr Opin Biotechnol 2023;84:103007. [PMID: 37931573 DOI: 10.1016/j.copbio.2023.103007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Revised: 09/12/2023] [Accepted: 09/13/2023] [Indexed: 11/08/2023]
23
Abakarova M, Marquet C, Rera M, Rost B, Laine E. Alignment-based Protein Mutational Landscape Prediction: Doing More with Less. Genome Biol Evol 2023;15:evad201. [PMID: 37936309 PMCID: PMC10653582 DOI: 10.1093/gbe/evad201] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2023] [Revised: 10/27/2023] [Accepted: 11/01/2023] [Indexed: 11/09/2023]  Open
24
Akl H, Emison B, Zhao X, Mondal A, Perez A, Dixit PD. GENERALIST: A latent space based generative model for protein sequence families. PLoS Comput Biol 2023;19:e1011655. [PMID: 38011273 PMCID: PMC10703406 DOI: 10.1371/journal.pcbi.1011655] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2023] [Revised: 12/07/2023] [Accepted: 11/03/2023] [Indexed: 11/29/2023]  Open
25
Malbranke C, Rostain W, Depardieu F, Cocco S, Monasson R, Bikard D. Computational design of novel Cas9 PAM-interacting domains using evolution-based modelling and structural quality assessment. PLoS Comput Biol 2023;19:e1011621. [PMID: 37976326 PMCID: PMC10729993 DOI: 10.1371/journal.pcbi.1011621] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2023] [Revised: 12/19/2023] [Accepted: 10/19/2023] [Indexed: 11/19/2023]  Open
26
Mardikoraem M, Wang Z, Pascual N, Woldring D. Generative models for protein sequence modeling: recent advances and future directions. Brief Bioinform 2023;24:bbad358. [PMID: 37864295 PMCID: PMC10589401 DOI: 10.1093/bib/bbad358] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2023] [Revised: 09/08/2023] [Accepted: 09/12/2023] [Indexed: 10/22/2023]  Open
27
Mallik BB, Stanislaw J, Alawathurage TM, Khmelinskaia A. De Novo Design of Polyhedral Protein Assemblies: Before and After the AI Revolution. Chembiochem 2023;24:e202300117. [PMID: 37014094 DOI: 10.1002/cbic.202300117] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2023] [Revised: 04/03/2023] [Accepted: 04/03/2023] [Indexed: 04/05/2023]
28
Ziegler C, Martin J, Sinner C, Morcos F. Latent generative landscapes as maps of functional diversity in protein sequence space. Nat Commun 2023;14:2222. [PMID: 37076519 PMCID: PMC10113739 DOI: 10.1038/s41467-023-37958-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2022] [Accepted: 04/05/2023] [Indexed: 04/21/2023]  Open
29
Budzynski L, Pagnani A. Small-coupling expansion for multiple sequence alignment. Phys Rev E 2023;107:044125. [PMID: 37198812 DOI: 10.1103/physreve.107.044125] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2022] [Accepted: 03/27/2023] [Indexed: 05/19/2023]
30
Malbranke C, Bikard D, Cocco S, Monasson R, Tubiana J. Machine learning for evolutionary-based and physics-inspired protein design: Current and future synergies. Curr Opin Struct Biol 2023;80:102571. [PMID: 36947951 DOI: 10.1016/j.sbi.2023.102571] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Revised: 01/29/2023] [Accepted: 02/07/2023] [Indexed: 03/24/2023]
31
Inferring protein fitness landscapes from laboratory evolution experiments. PLoS Comput Biol 2023;19:e1010956. [PMID: 36857380 PMCID: PMC10010530 DOI: 10.1371/journal.pcbi.1010956] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2022] [Revised: 03/13/2023] [Accepted: 02/16/2023] [Indexed: 03/02/2023]  Open
32
Clifton BE, Kozome D, Laurino P. Efficient Exploration of Sequence Space by Sequence-Guided Protein Engineering and Design. Biochemistry 2023;62:210-220. [PMID: 35245020 DOI: 10.1021/acs.biochem.1c00757] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
33
Schmitt LT, Paszkowski-Rogacz M, Jug F, Buchholz F. Prediction of designer-recombinases for DNA editing with generative deep learning. Nat Commun 2022;13:7966. [PMID: 36575171 PMCID: PMC9794738 DOI: 10.1038/s41467-022-35614-6] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2022] [Accepted: 12/14/2022] [Indexed: 12/28/2022]  Open
34
A Bayesian generative neural network framework for epidemic inference problems. Sci Rep 2022;12:19673. [PMID: 36385141 PMCID: PMC9667449 DOI: 10.1038/s41598-022-20898-x] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2022] [Accepted: 09/20/2022] [Indexed: 11/17/2022]  Open
35
Ravishankar K, Jiang X, Leddin EM, Morcos F, Cisneros GA. Computational compensatory mutation discovery approach: Predicting a PARP1 variant rescue mutation. Biophys J 2022;121:3663-3673. [PMID: 35642254 PMCID: PMC9617126 DOI: 10.1016/j.bpj.2022.05.036] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2021] [Revised: 05/20/2022] [Accepted: 05/23/2022] [Indexed: 11/02/2022]  Open
36
Feinauer C, Meynard-Piganeau B, Lucibello C. Interpretable pairwise distillations for generative protein sequence models. PLoS Comput Biol 2022;18:e1010219. [PMID: 35737722 PMCID: PMC9258900 DOI: 10.1371/journal.pcbi.1010219] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2021] [Revised: 07/06/2022] [Accepted: 05/17/2022] [Indexed: 11/25/2022]  Open
37
Gerardos A, Dietler N, Bitbol AF. Correlations from structure and phylogeny combine constructively in the inference of protein partners from sequences. PLoS Comput Biol 2022;18:e1010147. [PMID: 35576238 PMCID: PMC9135348 DOI: 10.1371/journal.pcbi.1010147] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2021] [Revised: 05/26/2022] [Accepted: 04/27/2022] [Indexed: 11/19/2022]  Open
38
Epistatic models predict mutable sites in SARS-CoV-2 proteins and epitopes. Proc Natl Acad Sci U S A 2022;119:2113118119. [PMID: 35022216 PMCID: PMC8795541 DOI: 10.1073/pnas.2113118119] [Citation(s) in RCA: 54] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/13/2021] [Indexed: 12/21/2022]  Open
39
McGee F, Hauri S, Novinger Q, Vucetic S, Levy RM, Carnevale V, Haldane A. The generative capacity of probabilistic protein sequence models. Nat Commun 2021;12:6302. [PMID: 34728624 PMCID: PMC8563988 DOI: 10.1038/s41467-021-26529-9] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2021] [Accepted: 09/23/2021] [Indexed: 01/10/2023]  Open
40
Defresne M, Barbe S, Schiex T. Protein Design with Deep Learning. Int J Mol Sci 2021;22:11741. [PMID: 34769173 PMCID: PMC8584038 DOI: 10.3390/ijms222111741] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Revised: 10/23/2021] [Accepted: 10/26/2021] [Indexed: 12/21/2022]  Open
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