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Zhang T, Lin L, Zhu J, Cao Y, Wang Q, Huang W, Zhang C, Zhang X, Chen Z, Liu W, Yang P, Chen W, Chen M, Xiao H, Zhou X. Low-Temperature Water Evaporation-Mediated Fusion and Densification of Wood for High-Performance and Sustainable Materials. NANO LETTERS 2025; 25:7368-7377. [PMID: 40261146 DOI: 10.1021/acs.nanolett.5c00562] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/24/2025]
Abstract
Developing high-performance wood products to replace carbon-intensive structural materials is a key approach to reducing carbon emissions, whereas transforming low-strength wood into high-performance bulk materials through eco-friendly processing techniques is challenging but highly desired. Herein, a facile and sustainable water processing strategy is reported to robustly assemble wood pieces into high-performance bulk materials via delignification, followed by room-temperature water evaporation, eliminating the need for traditional adhesives. As water penetrates and swells the microfibrils, the plasticity of the softened wood is significantly enhanced, thereby facilitating the mutual diffusion of the microfibrils. The strong capillary stresses drive the microfibrils so close that they eventually accomplish molecular-level fusion and densification, which endows self-assembled wood with superior mechanical strength (tensile strength ∼ 535.21 MPa, lap shear strength ∼ 5.02 MPa, and solvent stability). This eco-friendly, water-mediated processing technique paves the way for the development of advanced, sustainable, and high-performance wood products.
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Affiliation(s)
- Tao Zhang
- Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, Nanjing Forestry University, Nanjing 210037, China
- International Innovation Center for Forest Chemicals and Materials, Nanjing 210037, China
- Jiangsu Engineering Research Center of Fast-growing Trees and Agri-fiber Materials, Nanjing 210037, China
- University New Brunswick, Department of Chemical Engineering, Fredericton, NB E3B 5A3, Canada
| | - Liangke Lin
- Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, Nanjing Forestry University, Nanjing 210037, China
- International Innovation Center for Forest Chemicals and Materials, Nanjing 210037, China
- Jiangsu Engineering Research Center of Fast-growing Trees and Agri-fiber Materials, Nanjing 210037, China
| | - Juya Zhu
- Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, Nanjing Forestry University, Nanjing 210037, China
- International Innovation Center for Forest Chemicals and Materials, Nanjing 210037, China
- Jiangsu Engineering Research Center of Fast-growing Trees and Agri-fiber Materials, Nanjing 210037, China
| | - Yizhong Cao
- China Bamboo Industry Institute, Zhejiang Agriculture and Forestry University, Hangzhou 311300, China
| | - Qi Wang
- Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, Nanjing Forestry University, Nanjing 210037, China
- International Innovation Center for Forest Chemicals and Materials, Nanjing 210037, China
- Jiangsu Engineering Research Center of Fast-growing Trees and Agri-fiber Materials, Nanjing 210037, China
| | - Wentao Huang
- Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, Nanjing Forestry University, Nanjing 210037, China
- International Innovation Center for Forest Chemicals and Materials, Nanjing 210037, China
- Jiangsu Engineering Research Center of Fast-growing Trees and Agri-fiber Materials, Nanjing 210037, China
| | - Chi Zhang
- School of Flexible Electronics, Sun Yat-Sen University, Shenzhen 518000, China
| | - Xiaoke Zhang
- School of Flexible Electronics, Sun Yat-Sen University, Shenzhen 518000, China
| | - Zhuo Chen
- School of Flexible Electronics, Sun Yat-Sen University, Shenzhen 518000, China
| | - Wenqiang Liu
- School of Flexible Electronics, Sun Yat-Sen University, Shenzhen 518000, China
| | - Pei Yang
- Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, Nanjing Forestry University, Nanjing 210037, China
- International Innovation Center for Forest Chemicals and Materials, Nanjing 210037, China
- Jiangsu Engineering Research Center of Fast-growing Trees and Agri-fiber Materials, Nanjing 210037, China
| | - Weimin Chen
- Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, Nanjing Forestry University, Nanjing 210037, China
- International Innovation Center for Forest Chemicals and Materials, Nanjing 210037, China
- Jiangsu Engineering Research Center of Fast-growing Trees and Agri-fiber Materials, Nanjing 210037, China
| | - Minzhi Chen
- Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, Nanjing Forestry University, Nanjing 210037, China
- International Innovation Center for Forest Chemicals and Materials, Nanjing 210037, China
- Jiangsu Engineering Research Center of Fast-growing Trees and Agri-fiber Materials, Nanjing 210037, China
| | - Huining Xiao
- University New Brunswick, Department of Chemical Engineering, Fredericton, NB E3B 5A3, Canada
| | - Xiaoyan Zhou
- Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, Nanjing Forestry University, Nanjing 210037, China
- International Innovation Center for Forest Chemicals and Materials, Nanjing 210037, China
- Jiangsu Engineering Research Center of Fast-growing Trees and Agri-fiber Materials, Nanjing 210037, China
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Kwon S, Prakash P, Cao Y, Houle FA, Goddard WA. Recombination of Autodissociated Water Ions in a Nanoscale Pure Water Droplet. J Am Chem Soc 2025; 147:6583-6593. [PMID: 39960427 DOI: 10.1021/jacs.4c15103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/27/2025]
Abstract
The recombination of water ions has diverse scientific and practical implications, ranging from acid-base chemistry and biological systems to planetary environments and applications in fuel cell and carbon conversion technologies. While spatial confinement affects the physicochemical properties of water dynamics, its impact on the recombination process has rarely been studied. In this work, we investigate the dynamics of water, the water ion distribution, and the ion recombination process in water droplets as a function of droplet size through molecular dynamics simulations and adaptive quantum mechanical/molecular mechanical calculations. We compare the dynamics of recombination in water droplet sizes ranging from 100 to 18 000 waters, both in their interiors and on their surfaces. We found that the self-diffusion of water dramatically decreases in droplets with a diameter below 2.2 nm. Using a classical RexPoN force-field, we found that the ions in 1000 H2O's spend almost 50% of the time on the surface and 0.5 nm beneath it with a slight preference for OH- ion to reside longer on the surface. We estimate that, on average, recombination in these drops occurs at 400 ps in 1000 H2O's and 1 ns in 3000 H2O's. We also found that recombination is not limited by the local structure of the surface or the size of the droplet but can be influenced by the geometry of the water wire connecting the ions as they approach each other, which can often prevent recombination. Our results provide insights to the reaction microenvironments presented by nanoscopic water droplets.
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Affiliation(s)
- Soonho Kwon
- Materials and Process Simulation Center (MSC), California Institute of Technology, Pasadena, California 91125, United States
| | - Prabhat Prakash
- Materials and Process Simulation Center (MSC), California Institute of Technology, Pasadena, California 91125, United States
| | - Yixiang Cao
- Schrodinger Inc., 1540 Broadway, 24th Floor, New York, New York 10036, United States
| | - Frances A Houle
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - William A Goddard
- Materials and Process Simulation Center (MSC), California Institute of Technology, Pasadena, California 91125, United States
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Shi Z, Guo Y, Zou X, Zhang J, Chen Z, Shan M, Zhang Z, Guo S, Yan F. Low Evaporation Enthalpy Ionic Covalent Organic Frameworks for Efficient Atmospheric Water Harvesting at Low Humidity. Angew Chem Int Ed Engl 2025; 64:e202420619. [PMID: 39681759 DOI: 10.1002/anie.202420619] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2024] [Revised: 11/28/2024] [Accepted: 12/16/2024] [Indexed: 12/18/2024]
Abstract
Herein, we introduce a series of ionic covalent organic frameworks (iCOFs) with a focus on addressing the challenge of water collection at low relative humidity levels below 25 %. These iCOFs are characterized by numerous hydrophilic sites and high water stability, enabling efficient water vapor adsorption even at relatively low humidity levels. Through the use of various hygroscopic salt cations and precise control of ion concentration within the pores, the water state within the iCOFs pores can be effectively managed. Among the iCOFs, TB-COF-Li stands out with an impressive adsorption capacity of 0.24 g g-1 from 0 to 22 % RH. Notably, due to its ionic porous structure, TB-COF-Li exhibits a significantly lower enthalpy of evaporation, measured at 967.04 J g-1, compared to bulk water with an enthalpy of 2387.40 J g-1. Moreover, under simulated conditions of 1.5 solar intensity at 60 °C, the majority of the adsorbed water can be rapidly desorbed without the need for additional energy input. This efficient desorption process contributes to a high water collection rate of 0.092 g g-1 h-1 in the final atmospheric water harvesting device. The development of these iCOFs offers a promising and cost-effective solution for obtaining fresh water in arid regions.
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Affiliation(s)
- Zheng Shi
- Jiangsu Engineering Laboratory of Novel Functional Polymeric Materials, Jiangsu Key Laboratory of Advanced Negative Carbon Technologies, Suzhou Key Laboratory of Soft Material and New Energy, College of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou, 215123, P. R. China
| | - Yu Guo
- Jiangsu Engineering Laboratory of Novel Functional Polymeric Materials, Jiangsu Key Laboratory of Advanced Negative Carbon Technologies, Suzhou Key Laboratory of Soft Material and New Energy, College of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou, 215123, P. R. China
| | - Xiuyang Zou
- Jiangsu Engineering Research Center for Environmental Functional Materials, School of Chemistry and Chemical Engineering, Huaiyin Normal University, Huaian, 223300, P. R. China
| | - Jiamin Zhang
- Jiangsu Engineering Laboratory of Novel Functional Polymeric Materials, Jiangsu Key Laboratory of Advanced Negative Carbon Technologies, Suzhou Key Laboratory of Soft Material and New Energy, College of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou, 215123, P. R. China
| | - Zhiwei Chen
- Jiangsu Engineering Laboratory of Novel Functional Polymeric Materials, Jiangsu Key Laboratory of Advanced Negative Carbon Technologies, Suzhou Key Laboratory of Soft Material and New Energy, College of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou, 215123, P. R. China
| | - Mingqing Shan
- Jiangsu Engineering Laboratory of Novel Functional Polymeric Materials, Jiangsu Key Laboratory of Advanced Negative Carbon Technologies, Suzhou Key Laboratory of Soft Material and New Energy, College of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou, 215123, P. R. China
| | - Zhixin Zhang
- Jiangsu Engineering Laboratory of Novel Functional Polymeric Materials, Jiangsu Key Laboratory of Advanced Negative Carbon Technologies, Suzhou Key Laboratory of Soft Material and New Energy, College of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou, 215123, P. R. China
| | - Siyu Guo
- Jiangsu Engineering Laboratory of Novel Functional Polymeric Materials, Jiangsu Key Laboratory of Advanced Negative Carbon Technologies, Suzhou Key Laboratory of Soft Material and New Energy, College of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou, 215123, P. R. China
| | - Feng Yan
- Jiangsu Engineering Laboratory of Novel Functional Polymeric Materials, Jiangsu Key Laboratory of Advanced Negative Carbon Technologies, Suzhou Key Laboratory of Soft Material and New Energy, College of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou, 215123, P. R. China
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Yang Y, Zhao L, Zhang Y, Yang Z, Lai W, Liang Y, Dou S, Liu M, Wang Y. Challenges and Prospects of Low-Temperature Rechargeable Batteries: Electrolytes, Interfaces, and Electrodes. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2024; 11:e2410318. [PMID: 39435752 PMCID: PMC11633578 DOI: 10.1002/advs.202410318] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2024] [Revised: 09/27/2024] [Indexed: 10/23/2024]
Abstract
Rechargeable batteries have been indispensable for various portable devices, electric vehicles, and energy storage stations. The operation of rechargeable batteries at low temperatures has been challenging due to increasing electrolyte viscosity and rising electrode resistance, which lead to sluggish ion transfer and large voltage hysteresis. Advanced electrolyte design and feasible electrode engineering to achieve desirable performance at low temperatures are crucial for the practical application of rechargeable batteries. Herein, the failure mechanism of the batteries at low temperature is discussed in detail from atomic perspectives, and deep insights on the solvent-solvent, solvent-ion, and ion-ion interactions in the electrolytes at low temperatures are provided. The evolution of electrode interfaces is discussed in detail. The electrochemical reactions of the electrodes at low temperatures are elucidated, and the approaches to accelerate the internal ion diffusion kinetics of the electrodes are highlighted. This review aims to deepen the understanding of the working mechanism of low-temperature batteries at the atomic scale to shed light on the future development of low-temperature rechargeable batteries.
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Affiliation(s)
- Yaxuan Yang
- Key Laboratory of Advanced Functional MaterialsMinistry of EducationSchool of Materials Science and EngineeringBeijing University of TechnologyBeijing100124China
| | - Lingfei Zhao
- Institute for Superconducting & Electronic MaterialsAustralian Institute of Innovative MaterialsUniversity of WollongongInnovation CampusSquires WayNorth WollongongNSW2500Australia
| | - Yiyang Zhang
- Institute for Superconducting & Electronic MaterialsAustralian Institute of Innovative MaterialsUniversity of WollongongInnovation CampusSquires WayNorth WollongongNSW2500Australia
| | - Zhuo Yang
- Institute for Superconducting & Electronic MaterialsAustralian Institute of Innovative MaterialsUniversity of WollongongInnovation CampusSquires WayNorth WollongongNSW2500Australia
| | - Wei‐Hong Lai
- Institute for Superconducting & Electronic MaterialsAustralian Institute of Innovative MaterialsUniversity of WollongongInnovation CampusSquires WayNorth WollongongNSW2500Australia
| | - Yaru Liang
- School of Materials Science and EngineeringXiangtan UniversityXiangtanHunan411105China
| | - Shi‐Xue Dou
- Institute for Superconducting & Electronic MaterialsAustralian Institute of Innovative MaterialsUniversity of WollongongInnovation CampusSquires WayNorth WollongongNSW2500Australia
- Institute of Energy Materials ScienceUniversity of Shanghai for Science and TechnologyShanghai200093China
| | - Min Liu
- Key Laboratory of Advanced Functional MaterialsMinistry of EducationSchool of Materials Science and EngineeringBeijing University of TechnologyBeijing100124China
| | - Yun‐Xiao Wang
- Institute for Superconducting & Electronic MaterialsAustralian Institute of Innovative MaterialsUniversity of WollongongInnovation CampusSquires WayNorth WollongongNSW2500Australia
- Institute of Energy Materials ScienceUniversity of Shanghai for Science and TechnologyShanghai200093China
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Masoumifeshani E, Korona T. Intermolecular interaction energies with AROFRAG-A systematic approach for fragmentation of aromatic molecules. J Comput Chem 2024; 45:2446-2464. [PMID: 38946399 DOI: 10.1002/jcc.27429] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2023] [Revised: 04/02/2024] [Accepted: 04/25/2024] [Indexed: 07/02/2024]
Abstract
Intermolecular interactions with polycyclic aromatic hydrocarbons (PAHs) represent an important area of physisorption studies. These investigations are often hampered by a size of interacting PAHs, which makes the calculation prohibitively expensive. Therefore, methods designed to deal with large molecules could be helpful to reduce the computational costs of such studies. Recently we have introduced a new systematic approach for the molecular fragmentation of PAHs, denoted as AROFRAG, which decomposes a large PAH molecule into a set of predefined small PAHs with a benzene ring being the smallest unbreakable unit, and which in conjunction with the Molecules-in-Molecules (MIM) approach provides an accurate description of total molecular energies. In this contribution we propose an extension of the AROFRAG, which provides a description of intermolecular interactions for complexes composed of PAH molecules. The examination of interaction energy partitioning for various test cases shows that the AROFRAG3 model connected with the MIM approach accurately reproduces all important components of the interaction energy. An additional important finding in our study is that the computationally expensive long-range electron-correlation part of the interaction energy, that is, the dispersion component, is well described at lower AROFRAG levels even without MIM, which makes the latter models interesting alternatives to existing methods for an accurate description of the electron-correlated part of the interaction energy.
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Affiliation(s)
| | - Tatiana Korona
- Faculty of Chemistry, University of Warsaw, Warsaw, Poland
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Qi J, Bao K, Wang W, Wu J, Wang L, Ma C, Wu Z, He Q. Emerging Two-Dimensional Materials for Proton-Based Energy Storage. ACS NANO 2024. [PMID: 39248347 DOI: 10.1021/acsnano.4c06737] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/10/2024]
Abstract
The rapid diffusion kinetics and smallest ion radius make protons the ideal cations toward the ultimate energy storage technology combining the ultrafast charging capabilities of supercapacitors and the high energy densities of batteries. Despite the concept existing for centuries, the lack of satisfactory electrode materials hinders its practical development. Recently, the rapid advancement of the emerging two-dimensional (2D) materials, characterized by their ultrathin morphology, interlayer van der Waals gaps, and distinctive electrochemical properties, injects promises into future proton-based energy storage systems. In this perspective, we comprehensively summarize the current advances in proton-based energy storage based on 2D materials. We begin by providing an overview of proton-based energy storage systems, including proton batteries, pseudocapacitors and electrical double layer capacitors. We then elucidate the fundamental knowledge about proton transport characteristics, including in electrolytes, at electrolyte/electrode interfaces, and within electrode materials, particularly in 2D material systems. We comprehensively summarize specific cases of 2D materials as proton electrodes, detailing their design concepts, proton transport mechanism and electrochemical performance. Finally, we provide insights into the prospects of proton-based energy storage systems, emphasizing the importance of rational design of 2D electrode materials and matching electrolyte systems.
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Affiliation(s)
- Junlei Qi
- Department of Materials Science and Engineering, City University of Hong Kong, 83 Tat Chee Avenue, Kowloon, Hong Kong, China
| | - Kai Bao
- Department of Materials Science and Engineering, City University of Hong Kong, 83 Tat Chee Avenue, Kowloon, Hong Kong, China
| | - Wenbin Wang
- Department of Materials Science and Engineering, City University of Hong Kong, 83 Tat Chee Avenue, Kowloon, Hong Kong, China
| | - Jingkun Wu
- Department of Materials Science and Engineering, City University of Hong Kong, 83 Tat Chee Avenue, Kowloon, Hong Kong, China
| | - Lingzhi Wang
- Department of Materials Science and Engineering, City University of Hong Kong, 83 Tat Chee Avenue, Kowloon, Hong Kong, China
| | - Cong Ma
- Department of Materials Science and Engineering, City University of Hong Kong, 83 Tat Chee Avenue, Kowloon, Hong Kong, China
| | - Zongxiao Wu
- Department of Materials Science and Engineering, City University of Hong Kong, 83 Tat Chee Avenue, Kowloon, Hong Kong, China
| | - Qiyuan He
- Department of Materials Science and Engineering, City University of Hong Kong, 83 Tat Chee Avenue, Kowloon, Hong Kong, China
- Hong Kong Institute for Clean Energy, City University of Hong Kong, Hong Kong, China
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Yang Y, Liu J, Li W, Zheng Y, Xu W. Colorimetric/fluorescent dual-mode assay for antioxidant capacity of gallnuts based on CuCo nanozyme and AIE luminogen. Talanta 2024; 277:126345. [PMID: 38878507 DOI: 10.1016/j.talanta.2024.126345] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2024] [Revised: 04/30/2024] [Accepted: 05/31/2024] [Indexed: 07/19/2024]
Abstract
In this work, we present a dual-mode assay system consisting of a nanozyme and a luminogen with the aggregation-induced emission (AIE) feature. In the assay system, the chosen nanozyme named CuCo-0 catalyzes the substrate to produce colorimetric signals, while the aggregates of H4ETTC (4,4',4″,4‴-(ethene-1,1,2,2-tetrayl) tetrakis ([1,1'-biphenyl]-4-carboxylic acid), a typical AIE luminogen, generate fluorescent signals. The peroxidase-like activity of the CuCo-0 nanozyme can be remarkably suppressed with sequential additions of antioxidants, leading to a dual-signal response characterized by enhanced fluorescence emission and reduced UV-vis absorbance. On this basis, a dual-mode assay capable of producing both colorimetric and fluorescent signals for the assessment of antioxidant capacity using gallic acid as a representative antioxidant was exploited. Good linearity can be obtained in the 0-60 μM range for both colorimetric analysis and fluorescent analysis, with detection limits of 1.3 μM and 0.35 μM, respectively. Furthermore, this dual-mode assay was successfully applied to real gallnut samples, yielding satisfactory results.
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Affiliation(s)
- Yiming Yang
- School of Materials Chemistry and Chemical Engineering, Ningbo University, Ningbo, 315211, Zhejiang, PR China
| | - Junlei Liu
- School of Materials Chemistry and Chemical Engineering, Ningbo University, Ningbo, 315211, Zhejiang, PR China
| | - Wenying Li
- School of Materials Chemistry and Chemical Engineering, Ningbo University, Ningbo, 315211, Zhejiang, PR China.
| | - Yueqing Zheng
- School of Materials Chemistry and Chemical Engineering, Ningbo University, Ningbo, 315211, Zhejiang, PR China.
| | - Wei Xu
- School of Materials Chemistry and Chemical Engineering, Ningbo University, Ningbo, 315211, Zhejiang, PR China
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Yano K, Matsuie Y, Sato A, Okada M, Akimoto T, Sugimoto I. Characterization of plasma polymerized acetonitrile film for fluorescence enhancement and its application to aptamer-based sandwich assay. ANALYTICAL METHODS : ADVANCING METHODS AND APPLICATIONS 2024; 16:5311-5320. [PMID: 39028106 DOI: 10.1039/d4ay00795f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/20/2024]
Abstract
Among biosensing systems for sensitive diagnoses fluorescence enhancement techniques have attracted considerable attention. This study constructed a simple multilayered structure comprising a plane metal mirror coated with a plasma-polymerized film (PPF) as an optical interference layer on a glass slide for fluorescence enhancement. Plasma polymerization enables the easy deposition of organic thin films containing functional groups, such as amino groups. This study prepared PPFs using acetonitrile as a monomer, and the influences of washing and the output powers of plasma polymerization on PPF thickness were examined by Fourier transform infrared spectroscopy. This is because controlling the PPF thickness is vital in fluorescence enhancement. Multilayered glass slides prepared using a silver layer with 84 nm-thick acetonitrile PPFs exhibited 11- and 281-fold fluorescence enhancements compared with those obtained from the substrates with a bare surface and only modified by the silver layer, respectively. Oligonucleotides labeled with a thiol group and cyanine5 were successfully immobilized on the multilayered substrates, and the fluorescence of the acetonitrile PPFs was superior to that of the allylamine and cyclopropylamine PPFs. Furthermore, an aptamer-based sandwich assay targeting thrombin was performed on the multilayered glass slides, resulting in an approximately 5.1-fold fluorescence enhancement compared with that obtained from the substrate with a bare surface. Calibration curves revealed the relationship between fluorescence intensity and thrombin concentration of 10-1000 nM. This study demonstrates that PPFs can function as materials for fluorescence enhancement, immobilization for biomaterials, and aptamer-based sandwich assays.
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Affiliation(s)
- Kazuyoshi Yano
- Graduate School of Bionics, Tokyo University of Technology, 1404-1 Katakura, Hachioji, Tokyo 192-0982, Japan.
| | - Yutaro Matsuie
- Graduate School of Bionics, Tokyo University of Technology, 1404-1 Katakura, Hachioji, Tokyo 192-0982, Japan.
| | - Ayaka Sato
- School of Bioscience and Biotechnology, Tokyo University of Technology, 1404-1 Katakura, Hachioji, Tokyo 192-0982, Japan
| | - Maiko Okada
- Graduate School of Bionics, Tokyo University of Technology, 1404-1 Katakura, Hachioji, Tokyo 192-0982, Japan.
| | - Takuo Akimoto
- Graduate School of Bionics, Tokyo University of Technology, 1404-1 Katakura, Hachioji, Tokyo 192-0982, Japan.
| | - Iwao Sugimoto
- Graduate School of Computer Sciences, Tokyo University of Technology, 1404-1 Katakura, Hachioji, Tokyo 192-0982, Japan
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Zhou B, Yu L, Zhang W, Liu X, Zhang H, Cheng J, Chen Z, Zhang H, Li M, Shi Y, Jia F, Huang Y, Zhang L, Ai Z. Cu 1-Fe Dual Sites for Superior Neutral Ammonia Electrosynthesis from Nitrate. Angew Chem Int Ed Engl 2024; 63:e202406046. [PMID: 38771293 DOI: 10.1002/anie.202406046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2024] [Revised: 05/05/2024] [Accepted: 05/20/2024] [Indexed: 05/22/2024]
Abstract
The electrochemical nitrate reduction reaction (NO3RR) is able to convert nitrate (NO3 -) into reusable ammonia (NH3), offering a green treatment and resource utilization strategy of nitrate wastewater and ammonia synthesis. The conversion of NO3 - to NH3 undergoes water dissociation to generate active hydrogen atoms and nitrogen-containing intermediates hydrogenation tandemly. The two relay processes compete for the same active sites, especially under pH-neutral condition, resulting in the suboptimal efficiency and selectivity in the electrosynthesis of NH3 from NO3 -. Herein, we constructed a Cu1-Fe dual-site catalyst by anchoring Cu single atoms on amorphous iron oxide shell of nanoscale zero-valent iron (nZVI) for the electrochemical NO3RR, achieving an impressive NO3 - removal efficiency of 94.8 % and NH3 selectivity of 99.2 % under neutral pH and nitrate concentration of 50 mg L-1 NO3 --N conditions, greatly surpassing the performance of nZVI counterpart. This superior performance can be attributed to the synergistic effect of enhanced NO3 - adsorption on Fe sites and strengthened water activation on single-atom Cu sites, decreasing the energy barrier for the rate-determining step of *NO-to-*NOH. This work develops a novel strategy of fabricating dual-site catalysts to enhance the electrosynthesis of NH3 from NO3 -, and presents an environmentally sustainable approach for neutral nitrate wastewater treatment.
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Affiliation(s)
- Biao Zhou
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Engineering Research Center of Photoenergy Utilization for Pollution Control and Carbon Reduction of Ministry of Education, Institute of Applied & Environmental Chemistry, College of Chemistry, Central China Normal University, Wuhan, 430079, P. R. China
| | - Linghao Yu
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Engineering Research Center of Photoenergy Utilization for Pollution Control and Carbon Reduction of Ministry of Education, Institute of Applied & Environmental Chemistry, College of Chemistry, Central China Normal University, Wuhan, 430079, P. R. China
| | - Weixing Zhang
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Engineering Research Center of Photoenergy Utilization for Pollution Control and Carbon Reduction of Ministry of Education, Institute of Applied & Environmental Chemistry, College of Chemistry, Central China Normal University, Wuhan, 430079, P. R. China
| | - Xupeng Liu
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Engineering Research Center of Photoenergy Utilization for Pollution Control and Carbon Reduction of Ministry of Education, Institute of Applied & Environmental Chemistry, College of Chemistry, Central China Normal University, Wuhan, 430079, P. R. China
| | - Hao Zhang
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Engineering Research Center of Photoenergy Utilization for Pollution Control and Carbon Reduction of Ministry of Education, Institute of Applied & Environmental Chemistry, College of Chemistry, Central China Normal University, Wuhan, 430079, P. R. China
| | - Jundi Cheng
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Engineering Research Center of Photoenergy Utilization for Pollution Control and Carbon Reduction of Ministry of Education, Institute of Applied & Environmental Chemistry, College of Chemistry, Central China Normal University, Wuhan, 430079, P. R. China
| | - Ziyue Chen
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Engineering Research Center of Photoenergy Utilization for Pollution Control and Carbon Reduction of Ministry of Education, Institute of Applied & Environmental Chemistry, College of Chemistry, Central China Normal University, Wuhan, 430079, P. R. China
| | - Hao Zhang
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Engineering Research Center of Photoenergy Utilization for Pollution Control and Carbon Reduction of Ministry of Education, Institute of Applied & Environmental Chemistry, College of Chemistry, Central China Normal University, Wuhan, 430079, P. R. China
| | - Meiqi Li
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai, 200240, P. R. China
| | - Yanbiao Shi
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai, 200240, P. R. China
| | - Falong Jia
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Engineering Research Center of Photoenergy Utilization for Pollution Control and Carbon Reduction of Ministry of Education, Institute of Applied & Environmental Chemistry, College of Chemistry, Central China Normal University, Wuhan, 430079, P. R. China
| | - Yi Huang
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Engineering Research Center of Photoenergy Utilization for Pollution Control and Carbon Reduction of Ministry of Education, Institute of Applied & Environmental Chemistry, College of Chemistry, Central China Normal University, Wuhan, 430079, P. R. China
| | - Lizhi Zhang
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai, 200240, P. R. China
| | - Zhihui Ai
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Engineering Research Center of Photoenergy Utilization for Pollution Control and Carbon Reduction of Ministry of Education, Institute of Applied & Environmental Chemistry, College of Chemistry, Central China Normal University, Wuhan, 430079, P. R. China
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10
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Li M, Wang P, Yu X, Su Y, Zhao J. Impact of Nuclear Quantum Effects on the Structural Properties of Protonated Water Clusters. J Phys Chem A 2024; 128:5954-5962. [PMID: 39007820 DOI: 10.1021/acs.jpca.4c03340] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/16/2024]
Abstract
Nuclear quantum effects (NQEs) play a crucial role in hydrogen-bonded systems due to quantum tunneling and proton fluctuation. Our understanding of how NQEs affect microstructures mainly focuses on bulk phases of liquids and solids but remains deficient for water clusters, including their hydrogen nuclei, hydrogen-bonded configurations, and temperature dependence. Here, we conducted ab initio molecular dynamics (MD) and path integral MD simulations to investigate the influence of NQEs on the structural properties of protonated water clusters H+(H2O)n (n = 3, 6, 9, 12). The results reveal that the NQEs become less evident as the cluster size increases due to the competition between NQEs and electrostatic interactions. Simulations of several H+(H2O)6 isomers at different temperatures indicate that the effect of elevated temperature on proton transfer is related to the initial structure. Interestingly, the process of proton transfer also involves the interconversion between Zundel-type and Eigen-type isomers. These findings significantly deepen our understanding of ion-water and water-water interactions, opening new avenues for the study of hydrated ion clusters and related systems.
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Affiliation(s)
- Mengxu Li
- Key Laboratory of Materials Modification by Laser, Ion and Electron Beams (Dalian University of Technology), Ministry of Education, Dalian 116024, China
| | | | - Xueke Yu
- Key Laboratory of Materials Modification by Laser, Ion and Electron Beams (Dalian University of Technology), Ministry of Education, Dalian 116024, China
| | - Yan Su
- Key Laboratory of Materials Modification by Laser, Ion and Electron Beams (Dalian University of Technology), Ministry of Education, Dalian 116024, China
| | - Jijun Zhao
- Guangdong Basic Research Center of Excellence for Structure and Fundamental Interactions of Matter, Guangdong Provincial Key Laboratory of Quantum Engineering and Quantum Materials, School of Physics, South China Normal University, Guangzhou 510006, China
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11
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Zhang P, Feng M, Xu X. Double-Layer Distribution of Hydronium and Hydroxide Ions in the Air-Water Interface. ACS PHYSICAL CHEMISTRY AU 2024; 4:336-346. [PMID: 39069983 PMCID: PMC11274287 DOI: 10.1021/acsphyschemau.3c00076] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/28/2023] [Revised: 04/04/2024] [Accepted: 04/05/2024] [Indexed: 07/30/2024]
Abstract
The acid-base nature of the aqueous interface has long been controversial. Most macroscopic experiments suggest that the air-water interface is basic based on the detection of negative charges at the interface that indicates the enrichment of hydroxides (OH-), whereas microscopic studies mostly support the acidic air-water interface with the observation of hydronium (H3O+) accumulation in the top layer of the interface. It is crucial to clarify the interfacial preference of OH- and H3O+ ions for rationalizing the debate. In this work, we perform deep potential molecular dynamics simulations to investigate the preferential distribution of OH- and H3O+ ions at the aqueous interfaces. The neural network potential energy surface is trained based on density functional theory calculations with the SCAN functional, which can accurately describe the diffusion of these two ions both in the interface and in the bulk water. In contrast to the previously reported single ion enrichment, we show that both OH- and H3O+ surprisingly prefer to accumulate in interfaces but at different interfacial depths, rendering a double-layer ionic distribution within ∼1 nm near the Gibbs dividing surface. The H3O+ preferentially resides in the topmost layer of the interface, but the OH-, which is enriched in the deeper interfacial layer, has a higher equilibrium concentration due to the more negative free energy of interfacial stabilization [-0.90 (OH-) vs -0.56 (H3O+) kcal/mol]. The present finding of the ionic double-layer distribution may qualitatively offer a self-consistent explanation for the long-term controversy about the acid-base nature of the air-water interface.
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Affiliation(s)
- Pengchao Zhang
- Center
for Combustion Energy, Department of Energy and Power Engineering,
and Key Laboratory for Thermal Science and Power Engineering of Ministry
of Education, Tsinghua University, Beijing 100084, China
| | - Muye Feng
- School
of Mechanical and Power Engineering, Nanjing
Tech University, Nanjing 211816, China
| | - Xuefei Xu
- Center
for Combustion Energy, Department of Energy and Power Engineering,
and Key Laboratory for Thermal Science and Power Engineering of Ministry
of Education, Tsinghua University, Beijing 100084, China
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12
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Zhang P, Chen C, Feng M, Sun C, Xu X. Hydroxide and Hydronium Ions Modulate the Dynamic Evolution of Nitrogen Nanobubbles in Water. J Am Chem Soc 2024; 146:19537-19546. [PMID: 38949461 DOI: 10.1021/jacs.4c06641] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/02/2024]
Abstract
It has been widely recognized that the pH environment influences the nanobubble dynamics and hydroxide ions adsorbed on the surface may be responsible for the long-term survival of the nanobubbles. However, understanding the distribution of hydronium and hydroxide ions in the vicinity of a bulk nanobubble surface at a microscopic scale and the consequent impact of these ions on the nanobubble behavior remains a challenging endeavor. In this study, we carried out deep potential molecular dynamics simulations to explore the behavior of a nitrogen nanobubble under neutral, acidic, and alkaline conditions and the inherent mechanism, and we also conducted a theoretical thermodynamic and dynamic analysis to address constraints related to simulation duration. Our simulations and theoretical analyses demonstrate a trend of nanobubble dissolution similar to that observed experimentally, emphasizing the limited dissolution of bulk nanobubbles in alkaline conditions, where hydroxide ions tend to reside slightly farther from the nanobubble surface than hydronium ions, forming more stable hydrogen bond networks that shield the nanobubble from dissolution. In acidic conditions, the hydronium ions preferentially accumulating at the nanobubble surface in an orderly manner drive nanobubble dissolution to increase the entropy of the system, and the dissolved nitrogen molecules further strengthen the hydrogen bond networks of systems by providing a hydrophobic environment for hydronium ions, suggesting both entropy and enthalpy effects contribute to the instability of nanobubbles under acidic conditions. These results offer fresh insights into the double-layer distribution of hydroxide and hydronium near the nitrogen-water interface that influences the dynamic behavior of bulk nanobubbles.
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Affiliation(s)
- Pengchao Zhang
- Center for Combustion Energy, Department of Energy and Power Engineering, and Key Laboratory for Thermal Science and Power Engineering of Ministry of Education, Tsinghua University, Beijing 100084, China
| | - Changsheng Chen
- Center for Combustion Energy, Department of Energy and Power Engineering, and Key Laboratory for Thermal Science and Power Engineering of Ministry of Education, Tsinghua University, Beijing 100084, China
| | - Muye Feng
- School of Mechanical and Power Engineering, Nanjing Tech University, Nanjing 211816, China
| | - Chao Sun
- Center for Combustion Energy, Department of Energy and Power Engineering, and Key Laboratory for Thermal Science and Power Engineering of Ministry of Education, Tsinghua University, Beijing 100084, China
- New Cornerstone Science Laboratory, Tsinghua University, Beijing 100084, China
- Department of Engineering Mechanics, School of Aerospace Engineering, Tsinghua University, Beijing 100084, China
| | - Xuefei Xu
- Center for Combustion Energy, Department of Energy and Power Engineering, and Key Laboratory for Thermal Science and Power Engineering of Ministry of Education, Tsinghua University, Beijing 100084, China
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13
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Lv G, Tu Y, Zhang JH, Chen G. Photomolecular effect: Visible light interaction with air-water interface. Proc Natl Acad Sci U S A 2024; 121:e2320844121. [PMID: 38652751 PMCID: PMC11067046 DOI: 10.1073/pnas.2320844121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2023] [Accepted: 03/08/2024] [Indexed: 04/25/2024] Open
Abstract
Although water is almost transparent to visible light, we demonstrate that the air-water interface interacts strongly with visible light via what we hypothesize as the photomolecular effect. In this effect, transverse-magnetic polarized photons cleave off water clusters from the air-water interface. We use 14 different experiments to demonstrate the existence of this effect and its dependence on the wavelength, incident angle, and polarization of visible light. We further demonstrate that visible light heats up thin fogs, suggesting that this process can impact weather, climate, and the earth's water cycle and that it provides a mechanism to resolve the long-standing puzzle of larger measured clouds absorption to solar radiation than theory could predict based on bulk water optical constants. Our study suggests that the photomolecular effect should happen widely in nature, from clouds to fogs, ocean to soil surfaces, and plant transpiration and can also lead to applications in energy and clean water.
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Affiliation(s)
- Guangxin Lv
- Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, MA02139
| | - Yaodong Tu
- Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, MA02139
| | - James H. Zhang
- Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, MA02139
| | - Gang Chen
- Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, MA02139
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14
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Otaki H, Ishiuchi SI, Fujii M, Sugita Y, Yagi K. Similarity scores of vibrational spectra reveal the atomistic structure of pentapeptides in multiple basins. Phys Chem Chem Phys 2024; 26:9906-9914. [PMID: 38477212 DOI: 10.1039/d4cp00064a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/14/2024]
Abstract
Vibrational spectroscopy combined with theoretical calculations is a powerful tool for analyzing the interaction and conformation of peptides at the atomistic level. Nonetheless, identifying the structure becomes increasingly difficult as the peptide size grows large. One example is acetyl-SIVSF-N-methylamide, a capped pentapeptide, whose atomistic structure has remained unknown since its first observation [T. Sekiguchi, M. Tamura, H. Oba, P. Çarçarbal, R. R. Lozada-Garcia, A. Zehnacker-Rentien, G. Grégoire, S. Ishiuchi and M. Fujii, Angew. Chem., Int. Ed., 2018, 57, 5626-5629]. Here, we propose a novel conformational search method, which exploits the structure-spectrum correlation using a similarity score that measures the agreement of theoretical and experimental spectra. Surprisingly, the two conformers have distinctly different energy and geometry. The second conformer is 25 kJ mol-1 higher in energy than the other, lowest-energy conformer. The result implies that there are multiple pathways in the early stage of the folding process: one to the global minimum and the other to a different basin. Once such a structure is established, the second conformer is unlikely to overcome the barrier to produce the most stable structure due to a vastly different hydrogen bond network of the backbone. Our proposed method can characterize the lowest-energy conformer and kinetically trapped, high-energy conformers of complex biomolecules.
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Affiliation(s)
- Hiroki Otaki
- Center for Bioinformatics and Molecular Medicine, Graduate School of Biomedical Sciences, Nagasaki University, 1-14 Bunkyo, Nagasaki, Nagasaki 852-8521, Japan
| | - Shun-Ichi Ishiuchi
- Department of Chemistry, School of Science, Tokyo Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo, 152-8550, Japan
| | - Masaaki Fujii
- School of Life Science and Technology, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa 226-8503, Japan
| | - Yuji Sugita
- Theoretical Molecular Science Laboratory, RIKEN Cluster for Pioneering Research, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan.
- Computational Biophysics Research Team, RIKEN Center for Computational Science, 7-1-26 Minatojima-Minamimachi, Chuo-ku, Kobe, Hyogo 650-0047, Japan
- Laboratory for Biomolecular Function Simulation, RIKEN Center for Biosystems Dynamics Research, 1-6-5 Minatojima-Minamimachi, Chuo-ku, Kobe, Hyogo 650-0047, Japan
| | - Kiyoshi Yagi
- Theoretical Molecular Science Laboratory, RIKEN Cluster for Pioneering Research, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan.
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15
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Santis GD, Herman KM, Heindel JP, Xantheas SS. Descriptors of water aggregation. J Chem Phys 2024; 160:054306. [PMID: 38341703 DOI: 10.1063/5.0179815] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2023] [Accepted: 01/05/2024] [Indexed: 02/13/2024] Open
Abstract
We rely on a total of 23 (cluster size, 8 structural, and 14 connectivity) descriptors to investigate structural patterns and connectivity motifs associated with water cluster aggregation. In addition to the cluster size n (number of molecules), the 8 structural descriptors can be further categorized into (i) one-body (intramolecular): covalent OH bond length (rOH) and HOH bond angle (θHOH), (ii) two-body: OO distance (rOO), OHO angle (θOHO), and HOOX dihedral angle (ϕHOOX), where X lies on the bisector of the HOH angle, (iii) three-body: OOO angle (θOOO), and (iv) many-body: modified tetrahedral order parameter (q) to account for two-, three-, four-, five-coordinated molecules (qm, m = 2, 3, 4, 5) and radius of gyration (Rg). The 14 connectivity descriptors are all many-body in nature and consist of the AD, AAD, ADD, AADD, AAAD, AAADD adjacencies [number of hydrogen bonds accepted (A) and donated (D) by each water molecule], Wiener index, Average Shortest Path Length, hydrogen bond saturation (% HB), and number of non-short-circuited three-membered cycles, four-membered cycles, five-membered cycles, six-membered cycles, and seven-membered cycles. We mined a previously reported database of 4 948 959 water cluster minima for (H2O)n, n = 3-25 to analyze the evolution and correlation of these descriptors for the clusters within 5 kcal/mol of the putative minima. It was found that rOH and % HB correlated strongly with cluster size n, which was identified as the strongest predictor of energetic stability. Marked changes in the adjacencies and cycle count were observed, lending insight into changes in the hydrogen bond network upon aggregation. A Principal Component Analysis (PCA) was employed to identify descriptor dependencies and group clusters into specific structural patterns across different cluster sizes. The results of this study inform our understanding of how water clusters evolve in size and what appropriate descriptors of their structural and connectivity patterns are with respect to system size, stability, and similarity. The approach described in this study is general and can be easily extended to other hydrogen-bonded systems.
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Affiliation(s)
- Garrett D Santis
- Department of Chemistry, University of Washington, Seattle, Washington 98195, USA
| | - Kristina M Herman
- Department of Chemistry, University of Washington, Seattle, Washington 98195, USA
| | - Joseph P Heindel
- Department of Chemistry, University of Washington, Seattle, Washington 98195, USA
| | - Sotiris S Xantheas
- Department of Chemistry, University of Washington, Seattle, Washington 98195, USA
- Advanced Computing, Mathematics and Data Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, MSIN J7-10, Richland, Washington 99352, USA
- Computational and Theoretical Chemistry Institute (CTCI), Pacific Northwest National Laboratory, Richland, Washington 99352, USA
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16
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Masoumifeshani E, Korona T. AROFRAG─A Systematic Approach for Fragmentation of Aromatic Molecules. J Chem Theory Comput 2024. [PMID: 38252847 DOI: 10.1021/acs.jctc.3c00875] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2024]
Abstract
We present a new systematic fragmentation scheme of polycyclic aromatic hydrocarbons (PAHs), including fullerenes and nanotubes, based on an idea to treat a sextet ring as a single unbreakable unit so that the basic unit of aromaticity remains preserved upon fragmentation. In the approach, denoted as AROFRAG (from aromatic fragmentation), a set of predefined elementary subsystems, such as naphthalene and biphenyl in the first model and larger PAHs in the second and third models, is generated with appropriate weights with the aim of reproducing the structure of the original molecule. The energies of the molecules are approximated as weighted sums of the energies of these subsystems. For symmetric cases, e.g., fullerenes, the point-group symmetry is preserved during the decomposition. The AROFRAG is used in conjunction with the molecule-in-molecule (MIM) technique to obtain an accurate description of the electronic energies. The new approach has been applied for selected graphene structures and fullerene doped with boron and nitrogen atoms, for which isomerization energies were calculated, as well as for several nanotubes and regular fullerene molecules. The combination of the third AROFRAG model and the MIM approach leads to the reproduction of electronic energies with a few milli-hartree accuracy at a fraction of the computational cost of the original method.
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Affiliation(s)
- Emran Masoumifeshani
- Faculty of Chemistry, University of Warsaw, ul. Pasteura 1, 02-093 Warsaw, Poland
| | - Tatiana Korona
- Faculty of Chemistry, University of Warsaw, ul. Pasteura 1, 02-093 Warsaw, Poland
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17
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Wu H, Hao J, Jiang Y, Jiao Y, Liu J, Xu X, Davey K, Wang C, Qiao SZ. Alkaline-based aqueous sodium-ion batteries for large-scale energy storage. Nat Commun 2024; 15:575. [PMID: 38233408 PMCID: PMC10794691 DOI: 10.1038/s41467-024-44855-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Accepted: 01/08/2024] [Indexed: 01/19/2024] Open
Abstract
Aqueous sodium-ion batteries are practically promising for large-scale energy storage, however energy density and lifespan are limited by water decomposition. Current methods to boost water stability include, expensive fluorine-containing salts to create a solid electrolyte interface and addition of potentially-flammable co-solvents to the electrolyte to reduce water activity. However, these methods significantly increase costs and safety risks. Shifting electrolytes from near neutrality to alkalinity can suppress hydrogen evolution while also initiating oxygen evolution and cathode dissolution. Here, we present an alkaline-type aqueous sodium-ion batteries with Mn-based Prussian blue analogue cathode that exhibits a lifespan of 13,000 cycles at 10 C and high energy density of 88.9 Wh kg-1 at 0.5 C. This is achieved by building a nickel/carbon layer to induce a H3O+-rich local environment near the cathode surface, thereby suppressing oxygen evolution. Concurrently Ni atoms are in-situ embedded into the cathode to boost the durability of batteries.
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Affiliation(s)
- Han Wu
- School of Chemical Engineering, The University of Adelaide, Adelaide, SA, 5005, Australia
| | - Junnan Hao
- School of Chemical Engineering, The University of Adelaide, Adelaide, SA, 5005, Australia
| | - Yunling Jiang
- School of Chemical Engineering, The University of Adelaide, Adelaide, SA, 5005, Australia
| | - Yiran Jiao
- School of Chemical Engineering, The University of Adelaide, Adelaide, SA, 5005, Australia
| | - Jiahao Liu
- School of Chemical Engineering, The University of Adelaide, Adelaide, SA, 5005, Australia
| | - Xin Xu
- School of Chemical Engineering, The University of Adelaide, Adelaide, SA, 5005, Australia
| | - Kenneth Davey
- School of Chemical Engineering, The University of Adelaide, Adelaide, SA, 5005, Australia
| | - Chunsheng Wang
- Department of Chemical and Biomolecular Engineering, University of Maryland, College Park, MD, 20742, USA
| | - Shi-Zhang Qiao
- School of Chemical Engineering, The University of Adelaide, Adelaide, SA, 5005, Australia.
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18
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Han M, Li TC, Chen X, Yang HY. Electrolyte Modulation Strategies for Low-Temperature Zn Batteries. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2024; 20:e2304901. [PMID: 37695085 DOI: 10.1002/smll.202304901] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2023] [Revised: 07/31/2023] [Indexed: 09/12/2023]
Abstract
Aqueous rechargeable Zn metal batteries (ARZBs) are extensively studied recently because of their low-cost, high-safety, long lifespan, and other unique merits. However, the terrible ion conductivity and insufficient interfacial redox dynamics at low temperatures restrict their extended applications under harsh environments such as polar inspections, deep sea exploration, and daily use in cold regions. Electrolyte modulation is considered to be an effective way to achieve low-temperature operation for ARZBs. In this review, first, the fundamentals of the liquid-solid transition of water at low temperatures are revealed, and an in-depth understanding of the critical factors for inferior performance at low temperatures is given. Furthermore, the electrolyte modulation strategies are categorized into anion/concentration regulation, organic co-solvent/additive introduction, anti-freezing hydrogels construction, and eutectic mixture design strategies, and emphasize the recent progress of these strategies in low-temperature Zn batteries. Finally, promising design principles for better electrolytes are recommended and future research directions about high-performance ARZBs at low temperatures are provided.
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Affiliation(s)
- Mingming Han
- Hangzhou Institute of Advanced Studies, Zhejiang Normal University, Hangzhou, 311231, China
| | - Tian Chen Li
- Pillar of Engineering Product Development, Singapore University of Technology and Design, 8 Somapah Road, Singapore, 487372, Singapore
| | - Xiang Chen
- College of Textile Science and Engineering (International Institute of Silk), Zhejiang Sci-Tech University, Hangzhou, 310018, China
| | - Hui Ying Yang
- Pillar of Engineering Product Development, Singapore University of Technology and Design, 8 Somapah Road, Singapore, 487372, Singapore
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19
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Yan H, Li S, Zhong J, Li B. An Electrochemical Perspective of Aqueous Zinc Metal Anode. NANO-MICRO LETTERS 2023; 16:15. [PMID: 37975948 PMCID: PMC10656387 DOI: 10.1007/s40820-023-01227-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2023] [Accepted: 09/28/2023] [Indexed: 11/19/2023]
Abstract
Based on the attributes of nonflammability, environmental benignity, and cost-effectiveness of aqueous electrolytes, as well as the favorable compatibility of zinc metal with them, aqueous zinc ions batteries (AZIBs) become the leading energy storage candidate to meet the requirements of safety and low cost. Yet, aqueous electrolytes, acting as a double-edged sword, also play a negative role by directly or indirectly causing various parasitic reactions at the zinc anode side. These reactions include hydrogen evolution reaction, passivation, and dendrites, resulting in poor Coulombic efficiency and short lifespan of AZIBs. A comprehensive review of aqueous electrolytes chemistry, zinc chemistry, mechanism and chemistry of parasitic reactions, and their relationship is lacking. Moreover, the understanding of strategies for suppressing parasitic reactions from an electrochemical perspective is not profound enough. In this review, firstly, the chemistry of electrolytes, zinc anodes, and parasitic reactions and their relationship in AZIBs are deeply disclosed. Subsequently, the strategies for suppressing parasitic reactions from the perspective of enhancing the inherent thermodynamic stability of electrolytes and anodes, and lowering the dynamics of parasitic reactions at Zn/electrolyte interfaces are reviewed. Lastly, the perspectives on the future development direction of aqueous electrolytes, zinc anodes, and Zn/electrolyte interfaces are presented.
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Affiliation(s)
- Huibo Yan
- School of Materials Science and Engineering, Beihang University, Beijing, 100191, People's Republic of China
| | - Songmei Li
- School of Materials Science and Engineering, Beihang University, Beijing, 100191, People's Republic of China
| | - Jinyan Zhong
- School of Materials Science and Engineering, Beihang University, Beijing, 100191, People's Republic of China.
| | - Bin Li
- School of Materials Science and Engineering, Beihang University, Beijing, 100191, People's Republic of China.
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20
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Kato T, Fujii A. Experimental confirmation of the Badger-Bauer rule in the protonated methanol clusters: weak hydrogen bond formation as a measure of terminal OH acidity in hydrogen bond networks. Phys Chem Chem Phys 2023; 25:30188-30192. [PMID: 37920966 DOI: 10.1039/d3cp04644c] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2023]
Abstract
We report a linear correlation between the OH stretch frequency shift of the protonated methanol cluster, H+(MeOH)n, upon the π-hydrogen bond formation with benzene and the enthalpy change in clustering of H+(MeOH)n to H+(MeOH)n+1. This result suggests a new method to explore hydrogen bond strength in hydrogen bond networks.
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Affiliation(s)
- Takeru Kato
- Department of Chemistry, Graduate School of Science, Tohoku University, Sendai 980-8578, Japan.
| | - Asuka Fujii
- Department of Chemistry, Graduate School of Science, Tohoku University, Sendai 980-8578, Japan.
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21
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Zamith S, Kassem A, L'Hermite JM, Joblin C, Cuny J. Threshold collision induced dissociation of protonated water clusters. J Chem Phys 2023; 159:184302. [PMID: 37955320 DOI: 10.1063/5.0167551] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Accepted: 10/19/2023] [Indexed: 11/14/2023] Open
Abstract
We report threshold collision induced dissociation experiments on protonated water clusters thermalized at low temperature for sizes n = 19-23. Fragmentation cross sections are recorded as a function of the collision energy and analyzed with a statistical model. This model allows us to account for dissociation cascades and provides values for the dissociation energies of each cluster. These values, averaging around 0.47 eV, are in good agreement with theoretical predictions at various levels of theory. Furthermore, the dissociation energies show a trend for the n = 21 magic and n = 22 anti-magic numbers relative to their neighbours, which is also in agreement with theory. These results provide further evidence to resolve the disagreement between previously published experimental values. A careful quantitative treatment of cascade dissociation in this model introduces interdependence between the dissociation energies of neighboring sizes, which reduces the number of free fitting parameters and improves both reliability and uncertainties on absolute dissociation energies deduced from experiments.
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Affiliation(s)
- Sébastien Zamith
- Laboratoire Collisions Agrégats Réactivité (LCAR/FERMI), UMR5589, Université Toulouse III - Paul Sabatier, CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
| | - Ali Kassem
- Laboratoire Collisions Agrégats Réactivité (LCAR/FERMI), UMR5589, Université Toulouse III - Paul Sabatier, CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
| | - Jean-Marc L'Hermite
- Laboratoire Collisions Agrégats Réactivité (LCAR/FERMI), UMR5589, Université Toulouse III - Paul Sabatier, CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
| | - Christine Joblin
- Institut de Recherche en Astrophysique et Planétologie (IRAP), UMR5277, Université Toulouse III - Paul Sabatier, CNRS, CNES, 9 avenue du Colonel Roche, F-31028 Toulouse, France
| | - Jérôme Cuny
- Laboratoire de Chimie et Physique Quantiques LCPQ/FERMI, Université Toulouse III - Paul Sabatier, CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
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22
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Frank I. Nuclear Motion Is Classical: Spectrum of a Magic Protonated Water Cluster. Molecules 2023; 28:6454. [PMID: 37764233 PMCID: PMC10534396 DOI: 10.3390/molecules28186454] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Revised: 09/01/2023] [Accepted: 09/04/2023] [Indexed: 09/29/2023] Open
Abstract
The assumption that nuclear motion is classical explains many phenomena. The problems of Schrödinger's cat and the EPR paradoxon do not exist in a perfectly deterministic theory. All it needs is to describe nuclear motion classically right from the beginning. To establish this simple idea, it must be tested for as many examples as possible. In the present paper, we use ab initio molecular dynamics to investigate the infrared spectrum of a 'magic' protonated water cluster H3O+(H2O)20 which exhibits some features that were believed to afford a quantum treatment of nuclear motion. The role of the temperature in contrast to a quantum mechanical description is discussed.
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Affiliation(s)
- Irmgard Frank
- Theoretical Chemistry, Leibniz University Hannover, Callinstr. 3A, 30167 Hannover, Germany
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23
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Mackie CJ, Lu W, Liang J, Kostko O, Bandyopadhyay B, Gupta I, Ahmed M, Head-Gordon M. Magic Numbers and Stabilities of Photoionized Water Clusters: Computational and Experimental Characterization of the Nanosolvated Hydronium Ion. J Phys Chem A 2023. [PMID: 37441795 DOI: 10.1021/acs.jpca.3c02230] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/15/2023]
Abstract
The stability and distributions of small water clusters generated in a supersonic beam expansion are interrogated by tunable vacuum ultraviolet (VUV) radiation generated at a synchrotron. Time-of-flight mass spectrometry reveals enhanced population of various protonated water clusters (H+(H2O)n) based upon ionization energy and photoionization distance from source, suggesting there are "magic" numbers below the traditional n = 21 that predominates in the literature. These intensity distributions suggest that VUV threshold photoionization (11.0-11.5 eV) of neutral water clusters close to the nozzle exit leads to a different nonequilibrium state compared to a skimmed molecular beam. This results in the appearance of a new magic number at 14. Metadynamics conformer searches coupled with modern density functional calculations are used to identify the global minimum energy structures of protonated water clusters between n = 2 and 21, as well as the manifold of low-lying metastable minima. New lowest energy structures are reported for the cases of n = 5, 6, 11, 12, 16, and 18, and special stability is identified by several measures. These theoretical results are in agreement with the experiments performed in this work in that n = 14 is shown to exhibit additional stability, based on the computed second-order stabilization energy relative to most cluster sizes, though not to the extent of the well-known n = 21 cluster. Other cluster sizes that show some additional energetic stability are n = 7, 9, 12, 17, and 19. To gain insight into the balance between ion-water and water-water interactions as a function of the cluster size, an analysis of the effective two-body interactions (which sum exactly to the total interaction energy) was performed. This analysis reveals a crossover as a function of cluster size between a water-hydronium-dominated regime for small clusters and a water-water-dominated regime for larger clusters around n = 17.
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Affiliation(s)
- Cameron J Mackie
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
| | - Wenchao Lu
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Jiashu Liang
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
| | - Oleg Kostko
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Biswajit Bandyopadhyay
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Ishan Gupta
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
| | - Musahid Ahmed
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Martin Head-Gordon
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
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24
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Lounasvuori M, Sun Y, Mathis TS, Puskar L, Schade U, Jiang DE, Gogotsi Y, Petit T. Vibrational signature of hydrated protons confined in MXene interlayers. Nat Commun 2023; 14:1322. [PMID: 36898985 PMCID: PMC10006414 DOI: 10.1038/s41467-023-36842-0] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2022] [Accepted: 02/15/2023] [Indexed: 03/12/2023] Open
Abstract
The hydration structure of protons has been studied for decades in bulk water and protonated clusters due to its importance but has remained elusive in planar confined environments. Two-dimensional (2D) transition metal carbides known as MXenes show extreme capacitance in protic electrolytes, which has attracted attention in the energy storage field. We report here that discrete vibrational modes related to protons intercalated in the 2D slits between Ti3C2Tx MXene layers can be detected using operando infrared spectroscopy. The origin of these modes, not observed for protons in bulk water, is attributed to protons with reduced coordination number in confinement based on Density Functional Theory calculations. This study therefore demonstrates a useful tool for the characterization of chemical species under 2D confinement.
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Affiliation(s)
- Mailis Lounasvuori
- Helmholtz-Zentrum Berlin für Materialien und Energie GmbH, Berlin, Germany
| | - Yangyunli Sun
- Department of Chemistry, University of California, Riverside, Riverside, CA, USA
| | - Tyler S Mathis
- Department of Materials Science and Engineering and A. J. Drexel Nanomaterials Institute, Drexel University, Philadelphia, PA, USA
| | - Ljiljana Puskar
- Helmholtz-Zentrum Berlin für Materialien und Energie GmbH, Berlin, Germany
| | - Ulrich Schade
- Helmholtz-Zentrum Berlin für Materialien und Energie GmbH, Berlin, Germany
| | - De-En Jiang
- Department of Chemistry, University of California, Riverside, Riverside, CA, USA
- Department of Chemical and Biomolecular Engineering, Vanderbilt University, Nashville, TN, USA
| | - Yury Gogotsi
- Department of Materials Science and Engineering and A. J. Drexel Nanomaterials Institute, Drexel University, Philadelphia, PA, USA
| | - Tristan Petit
- Helmholtz-Zentrum Berlin für Materialien und Energie GmbH, Berlin, Germany.
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25
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Zhang H, Xiao X, Xu H, Wang L, Li Y, Ouyang C, Zhong S. Two-dimensional metal-phase layered molybdenum disulfide for electrocatalytic hydrogen evolution reaction. NANOSCALE 2023; 15:4429-4437. [PMID: 36751735 DOI: 10.1039/d2nr06184h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
The two-dimensional (2D) basal plane of metal-phase molybdenum disulphide (1T-MoS2) provides a large area of active sites to significantly reduce the overpotential of the hydrogen evolution reaction (HER), but the long preparation period limits its industrial application. Here, 1T-MoS2 catalysts derived from molybdenum blue solution (MBS) were prepared in one step using a rapid high-pressure microwave (MW-MoS2) strategy. This method eliminated the thermodynamic process with a long time required for Mo-O trioxide bond breakage and reduction (MoVI → MoIV) of the conventional hydrothermal method. Additionally, the introduction of heteroatomic oxygen atoms effectively reduced the build-up of MW-MoS2 and improved the monolayer/few-layer state and stability. Impressively, MW-MoS2 has outstanding electrocatalytic performance, with a low overpotential (62 mV) at 10 mA cm-2 and a small Tafel slope (42 mV dec-1). This provides a simple strategy for the rapid preparation of a 2D sulphide HER catalyst with performance close to that of commercial Pt/C.
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Affiliation(s)
- Hang Zhang
- Research Center for Ultrafine Powder Materials, College of Chemistry and Chemical Engineering, Jiangxi Normal University, Nanchang, 330022, P.R. China.
| | - Xuejian Xiao
- Research Center for Ultrafine Powder Materials, College of Chemistry and Chemical Engineering, Jiangxi Normal University, Nanchang, 330022, P.R. China.
| | - Hualan Xu
- Analytical and Testing Center, Jiangxi Normal University, Nanchang, 330022, P.R. China
| | - Lei Wang
- Research Center for Ultrafine Powder Materials, College of Chemistry and Chemical Engineering, Jiangxi Normal University, Nanchang, 330022, P.R. China.
| | - Yuan Li
- Research Center for Ultrafine Powder Materials, College of Chemistry and Chemical Engineering, Jiangxi Normal University, Nanchang, 330022, P.R. China.
| | - Chuying Ouyang
- Department of Physics, Laboratory of Computational Materials Physics, Jiangxi Normal University, Nanchang, 330022, P.R. China.
| | - Shengliang Zhong
- Research Center for Ultrafine Powder Materials, College of Chemistry and Chemical Engineering, Jiangxi Normal University, Nanchang, 330022, P.R. China.
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26
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Kao CC, Ye C, Hao J, Shan J, Li H, Qiao SZ. Suppressing Hydrogen Evolution via Anticatalytic Interfaces toward Highly Efficient Aqueous Zn-Ion Batteries. ACS NANO 2023; 17:3948-3957. [PMID: 36744842 DOI: 10.1021/acsnano.2c12587] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
Aqueous Zn-ion batteries hold practical promise for large-scale energy storage because of the safety and affordability of aqueous-based electrolytes; in addition, the manufacturing process is significantly simplified by direct employment of Zn metal as an anode. However, hydrogen evolution due to near-surface water dissociation has hindered large-scale applications of them. Here, we report the suppression of the hydrogen evolution reaction via a CuN3-coordinated graphitic carbonitride (CuN3-C3N4) anticatalytic interface to achieve highly efficient aqueous Zn-ion batteries. Based on in situ gas chromatography and in situ synchrotron-based X-ray diffraction spectroscopy, we demonstrated that the hydrogen evolution reaction triggers the Zn4SO4(OH)6·xH2O formation. A combination of in situ infrared spectroscopy and density functional theory simulations has proved to stabilize near-surface H3O+ species and regulate adsorption of H* intermediates by an anticatalytic interface for hydrogen evolution reaction suppression. Consequently, the anticatalytic interface greatly improves the Coulombic efficiency of Zn plating/stripping to ∼99.7% for 5500 cycles and the cycling reversibility to over 1300 h at 1 mA cm-2 and 1 mAh cm-2. With an anticatalytic interface, the full cell shows an excellent Coulombic efficiency of 98.3% over 400 cycles at 1C. These findings provide strategic insight for targeted designing of highly efficient aqueous Zn-ion batteries.
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Affiliation(s)
- Chun-Chuan Kao
- School of Chemical Engineering and Advanced Materials, The University of Adelaide, Adelaide, SA5005, Australia
| | - Chao Ye
- School of Chemical Engineering and Advanced Materials, The University of Adelaide, Adelaide, SA5005, Australia
| | - Junnan Hao
- School of Chemical Engineering and Advanced Materials, The University of Adelaide, Adelaide, SA5005, Australia
| | - Jieqiong Shan
- School of Chemical Engineering and Advanced Materials, The University of Adelaide, Adelaide, SA5005, Australia
| | - Huan Li
- School of Chemical Engineering and Advanced Materials, The University of Adelaide, Adelaide, SA5005, Australia
| | - Shi-Zhang Qiao
- School of Chemical Engineering and Advanced Materials, The University of Adelaide, Adelaide, SA5005, Australia
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27
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Jiang Y, Cai Z, Yuan Q, Cao W, Hu Z, Sun H, Wang XB, Sun Z. Highly Structured Water Networks in Microhydrated Dodecaborate Clusters. J Phys Chem Lett 2022; 13:11787-11794. [PMID: 36516831 DOI: 10.1021/acs.jpclett.2c03537] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
We report a combined photoelectron spectroscopy and theoretical investigation of a series of size-selected hydrated closo-dodecaborate clusters B12X122-·nH2O (X = H, F, or I; n = 1-6). Distinct structural arrangements of water clusters from monomer to hexamer can be achieved by using different B12X122- bases, illustrating the evident solute specificity. Because B-H···H-O dihydrogen bonds are stronger than O···H-O hydrogen bonds in water, the added water molecules are arranged in a unified binding mode by forming highly structured water networks manipulated by B12H122-. As a comparison, the hydrated B12F122- clusters display similar water evolution for n values of 1 and 2 but different binding modes for larger clusters, while water networks in B12I122- share similarities with the free water clusters. This finding provides a consistent picture of the structural diversity of hydrogen bonding networks in microhydrated dodecaborates and a molecular-level understanding of microsolvation dynamics in aqueous borate chemistry.
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Affiliation(s)
- Yanrong Jiang
- State Key Laboratory of Precision Spectroscopy, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China
- Center for Transformative Science, ShanghaiTech University, Shanghai 201210, China
| | - Zhaojie Cai
- State Key Laboratory of Precision Spectroscopy, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China
| | - Qinqin Yuan
- Physical Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, Richland, Washington 99352, United States
| | - Wenjin Cao
- Physical Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, Richland, Washington 99352, United States
| | - Zhubin Hu
- State Key Laboratory of Precision Spectroscopy, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China
| | - Haitao Sun
- State Key Laboratory of Precision Spectroscopy, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China
- Collaborative Innovation Center of Extreme Optics, Shanxi University, Taiyuan, Shanxi 030006, China
- NYU-ECNU Center for Computational Chemistry at NYU Shanghai, Shanghai 200062, China
| | - Xue-Bin Wang
- Physical Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, Richland, Washington 99352, United States
| | - Zhenrong Sun
- State Key Laboratory of Precision Spectroscopy, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China
- Collaborative Innovation Center of Extreme Optics, Shanxi University, Taiyuan, Shanxi 030006, China
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28
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Liu J, He X. Recent advances in quantum fragmentation approaches to complex molecular and condensed‐phase systems. WIRES COMPUTATIONAL MOLECULAR SCIENCE 2022. [DOI: 10.1002/wcms.1650] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Jinfeng Liu
- Department of Basic Medicine and Clinical Pharmacy China Pharmaceutical University Nanjing China
- Shanghai Engineering Research Center of Molecular Therapeutics and New Drug Development, Shanghai Frontiers Science Center of Molecule Intelligent Syntheses, School of Chemistry and Molecular Engineering East China Normal University Shanghai China
| | - Xiao He
- Shanghai Engineering Research Center of Molecular Therapeutics and New Drug Development, Shanghai Frontiers Science Center of Molecule Intelligent Syntheses, School of Chemistry and Molecular Engineering East China Normal University Shanghai China
- New York University‐East China Normal University Center for Computational Chemistry New York University Shanghai Shanghai China
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29
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Zviagin A, Kopysov V, Boyarkin OV. Gentle nano-electrospray ion source for reliable and efficient generation of microsolvated ions. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2022; 93:114104. [PMID: 36461509 DOI: 10.1063/5.0119580] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
We present herein the design of a nano-electrospray ion source capable of reliable generation of large quantities of microsolvated ions. The source is based on a triple molecular skimmer scheme and can be quickly tuned to generate bare ions or their ionic complexes with up to more than 100 solvent molecules retained from solution. The performance of this source is illustrated by recording the mass spectra of distributions of ionic complexes of protonated water, amino acids, and a small protein ubiquitin. Protonated water complexes with more than 110 molecules and amino acids with more than 45 water molecules could be generated. Although the commercial ion source based on the double ion funnel design with orthogonal injection, which we used in our laboratory, is more efficient in generating ions than our triple skimmer ion source, they both exhibit comparable short-term stability in generating bare ions. In return, only the new source is capable of generating microsolvated ions.
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Affiliation(s)
- Andrei Zviagin
- Laboratoire de Chimie Physique Moléculaire, Ecole Polytechnique Fédérale de Lausanne, EPFL SB ISIC LCPM, Station 6, CH-1015 Lausanne, Switzerland
| | - Vladimir Kopysov
- Laboratoire de Chimie Physique Moléculaire, Ecole Polytechnique Fédérale de Lausanne, EPFL SB ISIC LCPM, Station 6, CH-1015 Lausanne, Switzerland
| | - Oleg V Boyarkin
- Laboratoire de Chimie Physique Moléculaire, Ecole Polytechnique Fédérale de Lausanne, EPFL SB ISIC LCPM, Station 6, CH-1015 Lausanne, Switzerland
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30
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Yang N, Huchmala RM, McCoy AB, Johnson MA. Character of the OH Bend-Stretch Combination Band in the Vibrational Spectra of the "Magic" Number H 3O +(H 2O) 20 and D 3O +(D 2O) 20 Cluster Ions. J Phys Chem Lett 2022; 13:8116-8121. [PMID: 35998327 DOI: 10.1021/acs.jpclett.2c02318] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
The fundamental transitions that contribute to the diffuse OH stretching spectrum of water are known to increase in width and intensity with increasing red shift from the free OH frequency. In contrast, the profile of the higher-energy combination band involving the OH stretching and the intramolecular HOH bending modes displays a qualitatively different spectral shape with a much faster falloff on the lower-energy side. We elucidate the molecular origin of this difference by analyzing the shapes of the combination bands in the IR spectra of cryogenically cooled H3O+(H2O)20 and D3O+(D2O)20 clusters. The difference in the shapes of the bands is traced to differences in the dependence of their transition dipole matrix elements on the hydrogen-bonding environment. The fact that individual transitions across the combination band envelope have similar intensities makes it a useful way to determine the participation of various sites in extended H-bonding networks.
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Affiliation(s)
- Nan Yang
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, United States
| | - Rachel M Huchmala
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | - Anne B McCoy
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | - Mark A Johnson
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, United States
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31
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Liu J, Lan J, He X. Toward High-level Machine Learning Potential for Water Based on Quantum Fragmentation and Neural Networks. J Phys Chem A 2022; 126:3926-3936. [PMID: 35679610 DOI: 10.1021/acs.jpca.2c00601] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Accurate and efficient simulation of liquids, such as water and salt solutions, using high-level wave function theories is still a formidable task for computational chemists owing to the high computational costs. In this study, we develop a deep machine learning potential based on fragment-based second-order Møller-Plesset perturbation theory (DP-MP2) for water through neural networks. We show that the DP-MP2 potential predicts the structural, dynamical, and thermodynamic properties of liquid water in better agreement with the experimental data than previous studies based on density functional theory (DFT). The nuclear quantum effects (NQEs) on the properties of liquid water are also examined, which are noticeable in affecting the structural and dynamical properties of liquid water under ambient conditions. This work provides a general framework for quantitative predictions of the properties of condensed-phase systems with the accuracy of high-level wave function theory while achieving significant computational savings compared to ab initio simulations.
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Affiliation(s)
- Jinfeng Liu
- Department of Basic Medicine and Clinical Pharmacy, China Pharmaceutical University, Nanjing 210009, China.,Shanghai Engineering Research Center of Molecular Therapeutics and New Drug Development, Shanghai Frontiers Science Center of Molecule Intelligent Syntheses, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China
| | - Jinggang Lan
- Chaire de Simulation à l'Echelle Atomique (CSEA), Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Xiao He
- Shanghai Engineering Research Center of Molecular Therapeutics and New Drug Development, Shanghai Frontiers Science Center of Molecule Intelligent Syntheses, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China.,New York University-East China Normal University Center for Computational Chemistry, NYU Shanghai, Shanghai 200062, China
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32
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Konermann L, Kim S. Grotthuss Molecular Dynamics Simulations for Modeling Proton Hopping in Electrosprayed Water Droplets. J Chem Theory Comput 2022; 18:3781-3794. [PMID: 35544700 DOI: 10.1021/acs.jctc.2c00001] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Excess protons in water exhibit unique transport properties because they can rapidly hop along H-bonded water wires. Considerable progress has been made in unraveling this Grotthuss diffusion mechanism using quantum mechanical-based computational techniques. Unfortunately, high computational cost tends to restrict those techniques to small systems and short times. Molecular dynamics (MD) simulations can be applied to much larger systems and longer time windows. However, standard MD methods do not permit the dissociation/formation of covalent bonds, such that Grotthuss diffusion cannot be captured. Here, we bridge this gap by combining atomistic MD simulations (using Gromacs and TIP4P/2005 water) with proton hopping. Excess protons are modeled as hydronium ions that undergo H3O+ + H2O → H2O + H3O+ transitions. In accordance with ab initio MD data, these Grotthuss hopping events are executed in "bursts" with quasi-instantaneous hopping across one or more waters. The bursts are separated by regular MD periods during which H3O+ ions undergo Brownian diffusion. The resulting proton diffusion coefficient agrees with the literature value. We apply this Grotthuss MD technique to highly charged water droplets that are in a size regime encountered during electrospray ionization (5 nm radius, ∼17,000 H2O). The droplets undergo rapid solvent evaporation and occasional H3O+ ejection, keeping them at ca. 81% of the Rayleigh limit. The simulated behavior is consistent with phase Doppler anemometry data. The Grotthuss MD technique developed here should be useful for modeling the behavior of various proton-containing systems that are too large for high-level computational approaches. In particular, we envision future applications related to electrospray processes, where earlier simulations used metal cations while in reality excess protons dominate.
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Affiliation(s)
- Lars Konermann
- Department of Chemistry, The University of Western Ontario, London, Ontario N6A 5B7, Canada
| | - Scott Kim
- Department of Chemistry, The University of Western Ontario, London, Ontario N6A 5B7, Canada
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33
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Meuwly M. Atomistic Simulations for Reactions and Vibrational Spectroscopy in the Era of Machine Learning─ Quo Vadis?. J Phys Chem B 2022; 126:2155-2167. [PMID: 35286087 DOI: 10.1021/acs.jpcb.2c00212] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Atomistic simulations using accurate energy functions can provide molecular-level insight into functional motions of molecules in the gas and in the condensed phase. This Perspective delineates the present status of the field from the efforts of others and some of our own work and discusses open questions and future prospects. The combination of physics-based long-range representations using multipolar charge distributions and kernel representations for the bonded interactions is shown to provide realistic models for the exploration of the infrared spectroscopy of molecules in solution. For reactions, empirical models connecting dedicated energy functions for the reactant and product states allow statistically meaningful sampling of conformational space whereas machine-learned energy functions are superior in accuracy. The future combination of physics-based models with machine-learning techniques and integration into all-purpose molecular simulation software provides a unique opportunity to bring such dynamics simulations closer to reality.
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Affiliation(s)
- Markus Meuwly
- Department of Chemistry, University of Basel, Klingelbergstrasse 80, 4056 Basel, Switzerland
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34
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Theoretical Description of Water from Single-Molecule to Condensed Phase: a Review of Recent Progress on Potential Energy Surfaces and Molecular Dynamics. CHINESE J CHEM PHYS 2022. [DOI: 10.1063/1674-0068/cjcp2201005] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
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35
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Liu J, He X. Ab initio molecular dynamics simulation of liquid water with fragment-based quantum mechanical approach under periodic boundary conditions. CHINESE J CHEM PHYS 2021. [DOI: 10.1063/1674-0068/cjcp2110183] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Affiliation(s)
- Jinfeng Liu
- Department of Basic Medicine and Clinical Pharmacy, China Pharmaceutical University, Nanjing 210009, China
- Shanghai Engineering Research Center of Molecular Therapeutics and New Drug Development, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China
| | - Xiao He
- Shanghai Engineering Research Center of Molecular Therapeutics and New Drug Development, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China
- New York University-East China Normal University Center for Computational Chemistry at New York University Shanghai, Shanghai 200062, China
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36
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Towards complete assignment of the infrared spectrum of the protonated water cluster H +(H 2O) 21. Nat Commun 2021; 12:6141. [PMID: 34686665 PMCID: PMC8536673 DOI: 10.1038/s41467-021-26284-x] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2021] [Accepted: 09/22/2021] [Indexed: 11/08/2022] Open
Abstract
The spectroscopic features of protonated water species in dilute acid solutions have been long sought after for understanding the microscopic behavior of the proton in water with gas-phase water clusters H+(H2O)n extensively studied as bottom-up model systems. We present a new protocol for the calculation of the infrared (IR) spectra of complex systems, which combines the fragment-based Coupled Cluster method and anharmonic vibrational quasi-degenerate perturbation theory, and demonstrate its accuracy towards the complete and accurate assignment of the IR spectrum of the H+(H2O)21 cluster. The site-specific IR spectral signatures reveal two distinct structures for the internal and surface four-coordinated water molecules, which are ice-like and liquid-like, respectively. The effect of inter-molecular interaction between water molecules is addressed, and the vibrational resonance is found between the O-H stretching fundamental and the bending overtone of the nearest neighboring water molecule. The revelation of the spectral signature of the excess proton offers deeper insight into the nature of charge accommodation in the extended hydrogen-bonding network underpinning this aqueous cluster. Protonated water species have been the subject of numerous experimental and computational studies. Here the authors provide a nearly complete assignment of the experimental IR spectrum of the H+(H2O)21 water cluster based on high-level wavefunction theory and anharmonic vibrational quasi-degenerate perturbation theory.
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