Microbial functional changes mark irreversible course of Tibetan grassland degradation

Diversity and composition of microbial communities in Jinsha earthen site under different degree of deterioration

Earthen sites are the important cultural heritage that carriers of human civilization and contains abundant history information. Microorganisms are one of important factors causing the deterioration of cultural heritage. However, little attention has been paid to the role of biological factors on the deterioration of earthen sites at present. In this study, microbial communities of Jinsha earthen site soils with different deterioration types and degrees as well as related to environmental factors were analyzed. The results showed that the concentrations of Mg2+ and SO42- were higher in the severe deterioration degree soils than in the minor deterioration degree soils. The Chao1 richness and Shannon diversity indices of bacteria in different type deterioration were higher in the summer than in the winter; the Chao1 and Shannon indices of fungi were lower in the summer. The differences in bacterial and fungal communities were associated with differences in Na+, K+, Mg2+ and Ca2+ contents. Based on both the relative abundances in amplicon sequencing and isolated strains, the bacterial phyla Actinobacteria, Firmicutes and Proteobacteria, and the Ascomycota genera Aspergillus, Cladosporium and Penicillium were common in all soils. The OTUs enriched in the severe deterioration degree soils were mostly assigned to Actinobacteria and Proteobacteria, whereas the Firmicutes OTUs differentially abundant in the severe deterioration degree were all depleted. All bacterial isolates produced alkali, implying that the deterioration on Jinsha earthen site may be accelerated through alkali production. The fungal isolates included both alkali and acid producing strains. The fungi with strong ability to produce acid were mainly from the severe deterioration degree samples and were likely to contribute to the deterioration. Taken together, the interaction between soil microbial communities and environment may affect the soil deterioration, accelerate the deterioration process and threaten the long-term preservation of Jinsha earthen site.

Deciphering the degradation characteristics of the fungicides imazalil and penflufen and their effects on soil bacterial community composition, assembly, and functional profiles

The adsorption-desorption and degradation characteristics of two widely applied fungicides, imazalil and penflufen, and the responses of soil bacterial diversity, structure, function, and interaction after long-term exposure were systemically studied in eight different soils. The adsorption ability of imazalil in soil was significantly higher than that of penflufen. Both imazalil and penflufen degraded slowly in most soils following the order: imazalil > penflufen, with soil pH, silt, and clay content being the potential major influencing factors. Both imazalil and penflufen obviously inhibited the soil microbial functional diversity, altered the soil bacterial community and decreased its diversity. Although exposure to low and high concentrations of imazalil and penflufen strengthened the interactions among the soil bacterial communities, the functional diversity of the co-occurrence network tended to be simple at high concentrations, especially in penflufen treatment. Both imazalil and penflufen markedly disturbed soil nitrogen cycling, especially penflufen seriously inhibited most nitrogen cycling processes, such as nitrogen fixation and nitrification. Meanwhile, sixteen and ten potential degradative bacteria of imazalil and penflufen, respectively, were found in soils, including Kaistobacter and Lysobacter. Collectively, the long-term application of imazalil and penflufen could cause residual accumulation in soils and subsequently result in serious negative effects on soil ecology.

Consumption in Non-Pastoral Regions Drove Three-Quarters of Forage-Livestock Conflicts in China

Forage-livestock conflict (FLC) is a major anthropogenic cause of rangeland degradation. It poses tremendous threats to the environment owing to its adverse impacts on carbon sequestration, water supply and regulation, and biodiversity conservation. Existing policy interventions focus on the in situ FLCs induced by local production activities but overlook the role of consumption activities in driving FLCs. Here, we investigate the spatiotemporal variations in China's FLCs and the domestic final consumers at the county level by combining remote sensing data and multi-regional input-output model. Results show that during 2005-2015, China's pastoralism induced an average of 82 million tons of FLCs per year. Domestic final demand was responsible for 85-93% of the FLCs in China. There was spatiotemporal heterogeneity in domestic consumption driving China's FLCs. In particular, the final demand of non-pastoral regions was responsible for around three-quarters (74-79%) of the total FLCs throughout the decade. The rangeland-based livestock raising, agricultural and sideline product processing, and catering sectors are important demand-side drivers. These findings can support targeted demand-side strategies and interregional cooperation to reduce China's FLCs, thus mitigating rangeland degradation.

Sediment organic carbon dynamics response to land use change in diverse watershed anthropogenic activities

Sediment organic carbon (SOC) is a precious archive that synthesizes anthropogenic processes that remove geochemical fluxes from watersheds. However, the scarcity of inspection about the dynamic mechanisms of anthropogenic activities on SOC limits understanding into how key human factors drive carbon dynamics. Here, four typical basins with similar natural but significantly diverse human contexts (high-moderate-low disturbance: XJ-ZS and YJ-LS) were selected to reconstruct sedimentation rates (SR) and SOC dynamics nearly a century based on 200-cm corers. A partial least squares path model (PLS-PM) was used to establish successive (70 years) and multiple anthropogenic data (population, agriculture, land use, etc.) quantification methods for SOC. Intensified anthropogenic disturbances shifted all SR from pre-stable to post-1960s fluctuating increases (total coefficient: high: 0.63 < low: 0.47 < medium: 0.45). Although land use change was co-critical driver of SOC variations, their trend and extent differed under the dams and other disturbances (SOC mutated in high-moderate but stable in low). For high basin, land use changes increased (0.12) but dams reduced (-0.10) the downstream SOC. Furthermore, SOC mutation corresponded to soil erosion due to urbanization in both periods A and B. For moderate, SOC was reversed with the increase in afforestation and cropland (-0.19) due to the forest excitation effect and deep ploughing, which corresponded to the drought in phase B and the anthropogenic ecological project in A. For low, the increase in SOC corresponded to the Great Leap Forward deforestation in period B and the reed sweep in A, which suggested the minor land change substantially affected (0.16) SOC in fragile environments. Overall, SOC dynamics revealed that anthropogenic activities affected terrestrial and aquatic ecosystems for near the centenary, especially land use. This is constructive for agroforestry management and reservoir construction, consistent with expectations like upstream carbon sequestration and downstream carbon stabilization.

Soil microbiomes and one health

The concept of one health highlights that human health is not isolated but connected to the health of animals, plants and environments. In this Review, we demonstrate that soils are a cornerstone of one health and serve as a source and reservoir of pathogens, beneficial microorganisms and the overall microbial diversity in a wide range of organisms and ecosystems. We list more than 40 soil microbiome functions that either directly or indirectly contribute to soil, plant, animal and human health. We identify microorganisms that are shared between different one health compartments and show that soil, plant and human microbiomes are perhaps more interconnected than previously thought. Our Review further evaluates soil microbial contributions to one health in the light of dysbiosis and global change and demonstrates that microbial diversity is generally positively associated with one health. Finally, we present future challenges in one health research and formulate recommendations for practice and evaluation.

The chromosome-scale genome of Kobresia myosuroides sheds light on karyotype evolution and recent diversification of a dominant herb group on the Qinghai-Tibet Plateau

Kobresia species are common in meadows on the Qinghai-Tibet Plateau. They are important food resources for local livestock, and serve a critical foundation for ecosystem integration. Genetic resources of Kobresia species are scarce. Here, we generated a chromosome-level genome assembly for K. myosuroides (Cyperaceae), using PacBio long-reads, Illumina short-reads, and Hi-C technology. The final assembly had a total size of 399.9 Mb with a contig N50 value of 11.9 Mb. The Hi-C result supported a 29 pseudomolecules model which was in consistent with cytological results. A total of 185.5 Mb (44.89% of the genome) transposable elements were detected, and 26,748 protein-coding genes were predicted. Comparative analysis revealed that Kobresia plants have experienced recent diversification events during the late Miocene to Pliocene. Karyotypes analysis indicated that the fission and fusion of chromosomes have been a major driver of speciation, which complied with the lack of whole-genome duplication (WGD) in K. myosuroides genome. Generally, this high-quality reference genome provides insights into the evolution of alpine sedges, and may be helpful to endemic forage improvement and alpine ecosystem preservation.

Greening or browning? The macro variation and drivers of different vegetation types on the Qinghai-Tibetan Plateau from 2000 to 2021

Vegetation greenness is one of the main indicators to characterize changes in terrestrial ecosystems. China has implemented a few large-scale ecological restoration programs on the Qinghai-Tibetan Plateau (QTP) to reverse the trend of ecosystem degradation. Although the effectiveness of these programs is beginning to show, the mechanisms of vegetation degradation under climate change and human activities are still controversial. Existing studies have mostly focused on changes in overall vegetation change, with less attention on the drivers of change in different vegetation types. In this study, earth satellite observation records were used to robustly map changes in vegetation greenness on the QTP from 2000 to 2021. The random forest (RF) algorithm was further used to detect the drivers of greenness browning on the QTP as a whole and in seven different vegetation types. The results show that an overall trend of greening in all seven vegetation types on the QTP over a 21-year period. The area of greening was 46.54×10⁴ km², and browning was 5.32×10⁴ km², representing a quarter and 2.86% of the natural vegetation area, respectively. The results of the browning driver analysis show that areas with high altitude, reduced annual precipitation, high intensity of human activity, average annual maximum and average annual minimum precipitation of approximately 500 mm are most susceptible to browning on the QTP. For the seven different vegetation types, their top 6 most important browning drivers and the ranking of drivers differed. DEM and precipitation changes are important drivers of browning for seven vegetation types. These results reflect the latest spatial and temporal dynamics of vegetation on the QTP and highlight the common and characteristic browning drivers of vegetation ecosystems. They provide support for understanding the response of different vegetation to natural and human impacts and for further implementation of site-specific restoration measures.