Micro-scale heterogeneity of soil phosphorus depends on soil substrate and depth

An innovative in situ AFM system for a soft X-ray spectromicroscopy synchrotron beamline

Multimodal imaging and spectroscopy like concurrent scanning transmission X-ray microscopy (STXM) and X-ray fluorescence (XRF) are highly desirable as they allow retrieving complementary information. This paper reports on the design, development, integration and field testing of a novel in situ atomic force microscopy (AFM) instrument for operation under high vacuum in a synchrotron soft X-ray microscopy STXM-XRF end-station. A combination of μXRF and AFM is demonstrated for the first time in the soft X-ray regime, with an outlook for the full XRF-STXM-AFM combination.

Contribution of Incorporating the Phosphorus Cycle into TRIPLEX-CNP to Improve the Quantification of Land Carbon Cycle

Phosphorus (P) is a key and a limiting nutrient in ecosystems and plays an important role in many physiological and biochemical processes, affecting both terrestrial ecosystem productivity and soil carbon storage. However, only a few global land surface models have incorporated P cycle and used to investigate the interactions of C-N-P and its limitation on terrestrial ecosystems. The overall objective of this study was to integrate the P cycle and its interaction with carbon (C) and nitrogen (N) into new processes model of TRIPLEX-CNP. In this study, key processes of the P cycle, including P pool sizes and fluxes in plant, litter, and soil were integrated into a new model framework, TRIPLEX-CNP. We also added dynamic P:C ratios for different ecosystems. Based on sensitivity analysis results, we identified the phosphorus resorption coefficient of leaf (rpleaf) as the most influential parameter to gross primary productivity (GPP) and biomass, and determined optimal coefficients for different plant functional types (PFTs). TRIPLEX-CNP was calibrated with 49 sites and validated against 116 sites across eight biomes globally. The results suggested that TRIPLEX-CNP performed well on simulating the global GPP and soil organic carbon (SOC) with respective R2 values of 0.85 and 0.78 (both p < 0.01) between simulated and observed values. The R2 of simulation and observation of total biomass are 0.67 (p < 0.01) by TRIPLEX-CNP. The overall model performance had been improved in global GPP, total biomass and SOC after adding the P cycle comparing with the earlier version. Our work represents the promising step toward new coupled ecosystem process models for improving the quantifications of land carbon cycle and reducing uncertainty.

Colours of Gemmy Phosphates from the Gavà Neolithic Mines (Catalonia, Spain): Origin and Archaeological Significance

In the Neolithic Gavà mines, variscite and turquoise were exploited for ornaments manufacturing, although some prospective pits and tunnels were dug on other similar greenish minerals such as smectite or kandite. A 3D study of the distribution of mineral phases allows us to determine the parameters involved in variscite colours. Methods are comprised of quantitative colourimetry, thin section petrography, SEM-BSE-EDS, EMPA, XRD, Raman spectroscopy, and 57Fe Mössbauer spectrometry. Mapping of the mines indicates that colour is not directly dependent on depth. Although variscite from Gavà is poor in Cr3+ and V+3 compared with gemmy variscite from other localities, the deep green samples content has the highest values of Cr3+. In the case of cryptocrystalline mixtures with jarosite, phosphosiderite, or goethite, variscite tends to acquire a greenish brown to olivaceous hue. If white minerals such as quartz, kandite, crandallite, or alunite are involved in the mixtures, variscite and turquoise colours become paler.

Classical and Nonclassical Nucleation and Growth Mechanisms for Nanoparticle Formation

All solid materials are created via nucleation. In this evolutionary process, nuclei form in solution or at interfaces and expand by monomeric growth, oriented attachment, and phase transformation. Nucleation determines the location and size of nuclei, whereas growth controls the size, shape, and aggregation of newly formed nanoparticles. These physical properties of nanoparticles can determine their functionalities, reactivities, and porosities, as well as their fate and transport. Recent advances in nanoscale analytical technologies allow in situ real-time observations, enabling us to uncover the molecular nature of nuclei and the critical controlling factors for nucleation and growth. Although a single theory cannot yet fully explain such evolving processes, we have started to better understand how both classical and nonclassical theories can work together, and we have begun to recognize the importance of connecting these theories. This review discusses the recent convergence of knowledge about the nucleation and the growth of nanoparticles. Expected final online publication date for the Annual Review of Physical Chemistry, Volume 73 is April 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.

Soft X-ray Microscopy Techniques for Medical and Biological Imaging at TwinMic—Elettra

Progress in nanotechnology calls for material probing techniques of high sensitivity and resolution. Such techniques are also used for high-impact studies of nanoscale materials in medicine and biology. Soft X-ray microscopy has been successfully used for investigating complex biological processes occurring at micrometric and sub-micrometric length scales and is one of the most powerful tools in medicine and the life sciences. Here, we present the capabilities of the TwinMic soft X-ray microscopy end-station at the Elettra synchrotron in the context of medical and biological imaging, while we also describe novel uses and developments.

Microscale Heterogeneous Distribution and Speciation of Phosphorus in Soils Amended with Mineral Fertilizer and Cattle Manure Compost

Global concerns for the sustainability of agriculture have emphasized the need to reduce the use of mineral fertilizer. Although phosphorus (P) is accumulated in farmland soils due to the long-term application of fertilizer, most soil P is not readily available to plants. The chemical speciation of P in soils, which comprise heterogeneous microenvironments, cannot be evaluated with a high degree of specificity using only macroscopic analyses. In this study, we investigated the distribution and speciation of P accumulated in soils by using both macro- and microscopic techniques including chemical extraction, solution and solid-state 31P NMR, bulk- and micro- P K-edge X-ray absorption near edge structure (XANES), and electron probe microanalysis (EPMA). Soil samples were collected from a field in which cabbage was cultivated under three amendment treatments: i) mineral fertilizer (NPK), ii) mineral fertilizer and compost (NPK + compost), and iii) mineral fertilizer plus compost but without nitrogen fertilizer (PK + compost). Macro-scale analyses suggested that accumulated P was predominantly inorganic P and associated with Al-bearing minerals. The repeated application of compost to the soils increased the proportion of P associated with Ca which accounted for 17% in the NPK + compost plot and 40% in the PK + compost plot. At the microscale, hot spots of P were heterogeneously distributed, and P was associated with Fe and Ca in hot spots of the NPK + compost (pH 6) and PK + compost (pH 7) treated samples, respectively. Our results indicate that application of compost contributed to creating diverse microenvironments hosting P in these soils.

Characteristics of phosphorus adsorption and desorption in erosive weathered granite area and effects of soil properties

Highly weathered acidic soils tend to have high phosphorus adsorption rates. Studying the differential phosphorus adsorption and desorption characteristics of these soils is of great significance to improve phosphorus utilization efficiency and reduce soil phosphorus loss in agricultural management. Erosive weathered granite soil (TL-Tillage layer, LL-Laterite layer, and SL-Sand layer) in Anji County, Zhejiang Province were selected for batch experiments and phosphorus fractionation test. The soil properties that are generally considered to have a greater impact on phosphorus adsorption and desorption are also studied. Derived from the Langmuir adsorption isotherm, the maximum absorption capacity (Q_max) of phosphorus in TL soil was greater than that in LL and SL soil. With a pH of 4.3-5.0, the three soils have the most phosphorus adsorption. The desorption ratio (D_r) in the SL soil is larger than the LL and TL soil. Six key soil property indicators can fit Q_max and D_r values well. Al-P is the main fraction in the phosphorus adsorption-desorption process. The particle size classification (PSC) method can be used to accurately calculate soil-specific surface area. The results of the soil phosphorus adsorption-desorption test can be used as an explanation of the results of artificial rainfall tests. Our results reveal the differential adsorption-desorption mechanism of eroded weathered granite soil, and provide a reference for selecting soil indicators for soil adsorption-desorption studies in different regions.

A Novel Approach for the Quantification of Different Inorganic and Organic Phosphorus Compounds in Environmental Samples by P L2,3-Edge X-ray Absorption Near-Edge Structure (XANES) Spectroscopy

Phosphorus (P) is an essential element for life on Earth, with an important and oftentimes unaccounted organic biogeochemical component. Current methods for the quantification of different organic P compounds in environmental samples (e.g., soils, sediments) are based on extraction techniques and often associated with incomplete P recovery or sample changes. In this study, we present a protocol for the quantification of different organic and inorganic P species in soils using synchrotron-based X-ray absorption near-edge structure (XANES) spectroscopy at the P L_2,3-edge. Its accuracy and precision was evaluated by analyzing 40 standard mixtures composed of seven different inorganic and organic P compounds (with a mean of R² = 0.85). In addition, we quantified the P species of two soils and two agro-industrial byproducts using P L_2,3-edge XANES spectroscopy and the results were compared with those obtained by P K-edge XANES or ³¹P NMR spectroscopy. Using the P L_2,3-edge, we identified different organic P species, including those not identified by the common P K-edge XANES. However, there is a consistent underestimation of organic polyphosphates. Overall, the application of P L_2,3-edge XANES provides a higher level of information than by P K-edge XANES, although the ubiquitous use of this novel methodology is still limited to samples with a phosphorus content above 3 mg g^-1.

Soil Organic Matter and Phosphate Sorption on Natural and Synthetic Fe Oxides under in Situ Conditions

Iron (Fe) oxides in soils are strong sorbents for environmentally important compounds like soil organic matter (SOM) or phosphate, while sorption under field conditions is still poorly understood. We installed polyvinyl chloride plastic bars which have been coated either with synthetic Fe or manganese (Mn) oxides for 30 days in a redoximorphic soil. A previous study revealed the formation of newly formed ("natural") Fe oxides along the Mn oxide coatings. This enables us to differentiate between sorption occurring onto the surfaces of synthetic versus natural Fe oxides. After removal of the bars, they were analyzed by nanoscale secondary ion mass spectrometry (NanoSIMS) to study the distribution of Fe (⁵⁶Fe¹⁶O^-), SOM (¹²C¹⁴N^-), and phosphorus (³¹P¹⁶O₂^-) at the microscale. Image analysis of individual Fe oxide particles revealed a close association of Fe, SOM, and P resulting in coverage values up to 71%. Furthermore, ion ratios between sorbent (⁵⁶Fe¹⁶O^-) and sorbate (¹²C¹⁴N^- and ³¹P¹⁶O₂^-) were smaller along the natural oxides when compared with those for synthetic Fe oxides. We conclude that both natural and synthetic Fe oxides rapidly sequester SOM and P (i.e., within 30 days) but that newly, natural formed Fe oxides sorbe more SOM and P than synthetic Fe oxides.

Multi-element effects on arsenate accumulation in a geochemical matrix determined using µ-XRF, µ-XANES and spatial statistics

Soils regulate the environmental impacts of trace elements, but direct measurements of reaction mechanisms in these complex, multi-component systems can be challenging. The objective of this work was to develop approaches for assessing effects of co-localized geochemical matrix elements on the accumulation and chemical speciation of arsenate applied to a soil matrix. Synchrotron X-ray fluorescence microprobe (µ-XRF) images collected across 100 µm × 100 µm and 10 µm × 10 µm regions of a naturally weathered soil sand-grain coating before and after treatment with As(V) solution showed strong positive partial correlations (r' = 0.77 and 0.64, respectively) between accumulated As and soil Fe, with weaker partial correlations (r' > 0.1) between As and Ca, and As and Zn in the larger image. Spatial and non-spatial regression models revealed a dominant contribution of Fe and minor contributions of Ca and Ti in predicting accumulated As, depending on the size of the sample area analyzed. Time-of-flight secondary ion mass spectrometry analysis of an area of the sand grain showed a significant correlation (r = 0.51) between Fe and Al, so effects of Fe versus Al (hydr)oxides on accumulated As could not be separated. Fitting results from 25 As K-edge microscale X-ray absorption near-edge structure (µ-XANES) spectra collected across a separate 10 µm × 10 µm region showed ∼60% variation in proportions of Fe(III) and Al(III)-bound As(V) standards, and fits to µ-XANES spectra collected across the 100 µm × 100 µm region were more variable. Consistent with insights from studies on model systems, the results obtained here indicate a dominance of Fe and possibly Al (hydr)oxides in controlling As(V) accumulation within microsites of the soil matrix analyzed, but the analyses inferred minor augmentation from co-localized Ti, Ca and possibly Zn.

Plant-mediated effects of soil phosphorus on the root-associated fungal microbiota in Arabidopsis thaliana

Plants respond to phosphorus (P) limitation through an array of morphological, physiological and metabolic changes which are part of the phosphate (Pi) starvation response (PSR). This response influences the establishment of the arbuscular mycorrhizal (AM) symbiosis in most land plants. It is, however, unknown to what extent available P and the PSR redefine plant interactions with the fungal microbiota in soil. Using amplicon sequencing of the fungal taxonomic marker ITS2, we examined the changes in root-associated fungal communities in the AM nonhost species Arabidopsis thaliana in response to soil amendment with P and to genetic perturbations in the plant PSR. We observed robust shifts in root-associated fungal communities of P-replete plants in comparison with their P-deprived counterparts, while bulk soil communities remained unaltered. Moreover, plants carrying mutations in the phosphate signaling network genes, phr1, phl1 and pho2, exhibited similarly altered root fungal communities characterized by the depletion of the chytridiomycete taxon Olpidium brassicae specifically under P-replete conditions. This study highlights the nutritional status and the underlying nutrient signaling network of an AM nonhost plant as previously unrecognized factors influencing the assembly of the plant fungal microbiota in response to P in nonsterile soil.

Comparison of soil organic carbon speciation using C NEXAFS and CPMAS 13C NMR spectroscopy

We compared synchrotron-based C near-edge X-ray absorption fine structure (NEXAFS) and CPMAS ¹³C nuclear magnetic resonance (NMR) spectroscopy with respect to their precision and accuracy to quantify different organic carbon (OC) species in defined mixtures of soil organic matter source compounds. We also used both methods to quantify different OC species in organic surface horizons of a Histic Leptosol as well as in mineral topsoil and subsoil horizons of two soils with different parent material, stage of pedogenesis, and OC content (Cambisol: 15-30 OC mgg^-1, Podzol: 0.9-7 OC mgg^-1). CPMAS ¹³C NMR spectroscopy was more accurate and precise (mean recovery of different C functional groups 96-103%) than C NEXAFS spectroscopy (mean recovery 92-113%). For organic surface and topsoil samples, NMR spectroscopy consistently yielded larger O-alkyl C percentages and smaller alkyl C percentages than C NEXAFS spectroscopy. For the Cambisol subsoil samples both methods performed well and showed similar C speciation results. NEXAFS spectroscopy yielded excellent spectra with a high signal-to-noise ratio also for OC-poor Podzol subsoil samples, whereas this was not the case for CPMAS ¹³C NMR spectroscopy even after sample treatment with HF. Our results confirm the analytical power of CPMAS ¹³C NMR spectroscopy for a reliable quantitative OC speciation in soils with >10mgOCg^-1. Moreover, they highlight the potential of synchrotron-based C NEXAFS spectroscopy as fast, non-invasive method to semi-quantify different C functional groups in soils with low C content (0.9-10mgg^-1).