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Sun Y, Ikeuchi Y, Guo F, Hyun I, Ming GL, Fu J. Bioengineering innovations for neural organoids with enhanced fidelity and function. Cell Stem Cell 2025; 32:689-709. [PMID: 40315834 PMCID: PMC12052258 DOI: 10.1016/j.stem.2025.03.014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2024] [Revised: 02/19/2025] [Accepted: 03/31/2025] [Indexed: 05/04/2025]
Abstract
Neural organoids have been utilized to recapitulate different aspects of the developing nervous system. While hailed as promising experimental tools for studying human neural development and neuropathology, current neural organoids do not fully recapitulate the anatomy or microcircuitry-level functionality of the developing brain, spinal cord, or peripheral nervous system. In this review, we discuss emerging bioengineering approaches that control morphogen signals and biophysical microenvironments, which have improved the efficiency, fidelity, and utility of neural organoids. Furthermore, advancements in bioengineered tools have facilitated more sophisticated analyses of neural organoid functions and applications, including improved neural-bioelectronic interfaces and organoid-based information processing. Emerging bioethical issues associated with advanced neural organoids are also discussed. Future opportunities of neural organoid research lie in enhancing their fidelity, maturity, and complexity and expanding their applications in a scalable manner.
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Affiliation(s)
- Yubing Sun
- Department of Mechanical and Industrial Engineering, University of Massachusetts, Amherst, Amherst, MA 01003, USA.
| | - Yoshiho Ikeuchi
- Institute of Industrial Science, The University of Tokyo, Tokyo 153-8505, Japan; Institute for AI and Beyond, The University of Tokyo, Tokyo 113-8654, Japan
| | - Feng Guo
- Department of Intelligent Systems Engineering, Indiana University Bloomington, Bloomington, IN 47408, USA
| | - Insoo Hyun
- Center for Life Sciences and Public Learning, Museum of Science, Boston, MA 02114, USA; Center for Bioethics, Harvard Medical School, Boston, MA 02115, USA
| | - Guo-Li Ming
- Department of Neuroscience, Perelman School of Medicine, Institute for Regenerative Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Jianping Fu
- Department of Mechanical Engineering, University of Michigan, Ann Arbor, MI 48109, USA; Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI 48109, USA; Department of Cell & Developmental Biology, University of Michigan Medical School, Ann Arbor, MI 48109, USA
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2
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Engel L, Liu KJ, Cui KW, de la Serna EL, Vachharajani VT, Dundes CE, Zheng SL, Begur M, Loh KM, Ang LT, Dunn AR. A microfluidic platform for anterior-posterior human endoderm patterning via countervailing morphogen gradients in vitro. iScience 2025; 28:111744. [PMID: 40040808 PMCID: PMC11879597 DOI: 10.1016/j.isci.2025.111744] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2024] [Revised: 09/22/2024] [Accepted: 01/02/2025] [Indexed: 03/06/2025] Open
Abstract
Understanding how morphogen gradients spatially pattern tissues is a fundamental question in developmental biology but can be difficult to directly address using conventional approaches. Here, we expose hPSC-derived endoderm cells to countervailing gradients of anteriorizing and posteriorizing signals using a widely available microfluidic device. This approach yielded spatially patterned cultures comprising anterior foregut (precursor to the thyroid, esophagus, and lungs) and mid/hindgut (precursor to the intestines) cells, whose identities were confirmed using single-cell RNA sequencing (scRNA-seq). By exposing stem cells to externally applied signaling gradients, this widely accessible microfluidic platform should accelerate the production of spatially patterned tissues, complementing internally self-organizing organoids. Applying artificial morphogen gradients in vitro may also illuminate how developing tissues interpret signaling gradients in systems that are not readily accessible for in vivo studies.
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Affiliation(s)
- Leeya Engel
- Department of Chemical Engineering, Stanford University, Stanford, CA 94305, USA
- Faculty of Mechanical Engineering, Technion – Israel Institute of Technology, Haifa 3200003, Israel
| | - Kevin J. Liu
- Institute for Stem Cell Biology & Regenerative Medicine, Stanford University, Stanford, CA 94305, USA
| | - Kiara W. Cui
- Department of Chemical Engineering, Stanford University, Stanford, CA 94305, USA
| | - Eva L. de la Serna
- Department of Chemical Engineering, Stanford University, Stanford, CA 94305, USA
| | - Vipul T. Vachharajani
- Department of Chemical Engineering, Stanford University, Stanford, CA 94305, USA
- Program in Biophysics, Medical Scientist Training Program, Stanford University, Stanford, CA 94305, USA
| | - Carolyn E. Dundes
- Institute for Stem Cell Biology & Regenerative Medicine, Stanford University, Stanford, CA 94305, USA
- Department of Developmental Biology, Stanford University, Stanford, CA 94305, USA
| | - Sherry Li Zheng
- Institute for Stem Cell Biology & Regenerative Medicine, Stanford University, Stanford, CA 94305, USA
- Department of Developmental Biology, Stanford University, Stanford, CA 94305, USA
| | - Manali Begur
- Institute for Stem Cell Biology & Regenerative Medicine, Stanford University, Stanford, CA 94305, USA
| | - Kyle M. Loh
- Institute for Stem Cell Biology & Regenerative Medicine, Stanford University, Stanford, CA 94305, USA
- Department of Developmental Biology, Stanford University, Stanford, CA 94305, USA
| | - Lay Teng Ang
- Institute for Stem Cell Biology & Regenerative Medicine, Stanford University, Stanford, CA 94305, USA
- Department of Urology, Stanford University, Stanford, CA 94305, USA
| | - Alexander R. Dunn
- Department of Chemical Engineering, Stanford University, Stanford, CA 94305, USA
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Kühn S, Magno V, Zimmermann R, Limasale YDP, Atallah P, Stoppa A, Männel MJ, Thiele J, Friedrichs J, Freudenberg U, Werner C. Microgels With Electrostatically Controlled Molecular Affinity to Direct Morphogenesis. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2025; 37:e2409731. [PMID: 39449199 PMCID: PMC11756038 DOI: 10.1002/adma.202409731] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2024] [Revised: 10/14/2024] [Indexed: 10/26/2024]
Abstract
Concentration gradients of soluble signaling molecules-morphogens-determine the cellular organization in tissue development. Morphogen-releasing microgels have shown potential to recapitulate this principle in engineered tissue constructs, however, with limited control over the molecular cues in space and time. Inspired by the functionality of sulfated glycosaminoglycans (sGAGs) in morphogen signaling in vivo, a library of sGAG-based microgels is developed and designated as µGel Units to Instruct Development (µGUIDEs). Adjustment of the microgel's sGAG sulfation patterns and concentration enabled the programming of electrostatic affinities that control the release of morphogens. Based on computational analyses of molecular transport processes, µGUIDEs provided unprecedented precision in the spatiotemporal modulation of vascular endothelial growth factor (VEGF) gradients in a microgel-in-gel vasculogenesis model and kidney organoid cultures. The versatile approach offers new options for creating morphogen signaling centers to advance the understanding of tissue and organ development.
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Affiliation(s)
- Sebastian Kühn
- Institute of Biofunctional Polymer Materials/Max Bergmann Center of Biomaterials DresdenLeibniz Institute of Polymer Research DresdenHohe Str. 601069DresdenGermany
| | - Valentina Magno
- Institute of Biofunctional Polymer Materials/Max Bergmann Center of Biomaterials DresdenLeibniz Institute of Polymer Research DresdenHohe Str. 601069DresdenGermany
| | - Ralf Zimmermann
- Institute of Biofunctional Polymer Materials/Max Bergmann Center of Biomaterials DresdenLeibniz Institute of Polymer Research DresdenHohe Str. 601069DresdenGermany
| | - Yanuar Dwi Putra Limasale
- Institute of Biofunctional Polymer Materials/Max Bergmann Center of Biomaterials DresdenLeibniz Institute of Polymer Research DresdenHohe Str. 601069DresdenGermany
| | - Passant Atallah
- Institute of Biofunctional Polymer Materials/Max Bergmann Center of Biomaterials DresdenLeibniz Institute of Polymer Research DresdenHohe Str. 601069DresdenGermany
| | - Aukha Stoppa
- Institute of Biofunctional Polymer Materials/Max Bergmann Center of Biomaterials DresdenLeibniz Institute of Polymer Research DresdenHohe Str. 601069DresdenGermany
| | - Max J. Männel
- Institute of Physical Chemistry and Polymer PhysicsLeibniz Institute of Polymer Research DresdenHohe Str. 601069DresdenGermany
| | - Julian Thiele
- Institute of Physical Chemistry and Polymer PhysicsLeibniz Institute of Polymer Research DresdenHohe Str. 601069DresdenGermany
- Institute of ChemistryOtto von Guericke University MagdeburgUniversitätsplatz 239106MagdeburgGermany
| | - Jens Friedrichs
- Institute of Biofunctional Polymer Materials/Max Bergmann Center of Biomaterials DresdenLeibniz Institute of Polymer Research DresdenHohe Str. 601069DresdenGermany
| | - Uwe Freudenberg
- Institute of Biofunctional Polymer Materials/Max Bergmann Center of Biomaterials DresdenLeibniz Institute of Polymer Research DresdenHohe Str. 601069DresdenGermany
- Center for Regenerative Therapies DresdenCluster of Excellence Physics of Life and Faculty of Chemistry and Food ChemistryDresden University of TechnologyFetscherstraße 10501307DresdenGermany
| | - Carsten Werner
- Institute of Biofunctional Polymer Materials/Max Bergmann Center of Biomaterials DresdenLeibniz Institute of Polymer Research DresdenHohe Str. 601069DresdenGermany
- Center for Regenerative Therapies DresdenCluster of Excellence Physics of Life and Faculty of Chemistry and Food ChemistryDresden University of TechnologyFetscherstraße 10501307DresdenGermany
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Abstract
The development of multicellular complex organisms relies on coordinated signaling from the microenvironment, including both biochemical and mechanical interactions. To better understand developmental biology, increasingly sophisticated in vitro systems are needed to mimic these complex extracellular features. In this Primer, we explore how engineered hydrogels can serve as in vitro culture platforms to present such signals in a controlled manner and include examples of how they have been used to advance our understanding of developmental biology.
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Affiliation(s)
- Karen L. Xu
- Department of Bioengineering, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Robert L. Mauck
- Department of Bioengineering, University of Pennsylvania, Philadelphia, PA 19104, USA
- McKay Orthopaedic Research Laboratory, Department of Orthopaedic Surgery, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
- Translational Musculoskeletal Research Center, Corporal Michael J. Crescenz VA Medical Center, Philadelphia, PA 19104, USA
| | - Jason A. Burdick
- Department of Bioengineering, University of Pennsylvania, Philadelphia, PA 19104, USA
- BioFrontiers Institute, University of Colorado Boulder, Boulder, CO 80303, USA
- Department of Chemical and Biological Engineering, University of Colorado Boulder, Boulder, CO 80303, USA
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Bonner MG, Gudapati H, Mou X, Musah S. Microfluidic systems for modeling human development. Development 2022; 149:274363. [PMID: 35156682 PMCID: PMC8918817 DOI: 10.1242/dev.199463] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
The proper development and patterning of organs rely on concerted signaling events emanating from intracellular and extracellular molecular and biophysical cues. The ability to model and understand how these microenvironmental factors contribute to cell fate decisions and physiological processes is crucial for uncovering the biology and mechanisms of life. Recent advances in microfluidic systems have provided novel tools and strategies for studying aspects of human tissue and organ development in ways that have previously been challenging to explore ex vivo. Here, we discuss how microfluidic systems and organs-on-chips provide new ways to understand how extracellular signals affect cell differentiation, how cells interact with each other, and how different tissues and organs are formed for specialized functions. We also highlight key advancements in the field that are contributing to a broad understanding of human embryogenesis, organogenesis and physiology. We conclude by summarizing the key advantages of using dynamic microfluidic or microphysiological platforms to study intricate developmental processes that cannot be accurately modeled by using traditional tissue culture vessels. We also suggest some exciting prospects and potential future applications of these emerging technologies.
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Affiliation(s)
- Makenzie G. Bonner
- Developmental and Stem Cell Biology Program, Department of Medicine, Duke University School of Medicine, Durham, NC 27710, USA,Department of Cell Biology, Duke University School of Medicine, Durham, NC 27710, USA,Center for Biomolecular and Tissue Engineering, Duke University, Durham, NC 27708, USA
| | - Hemanth Gudapati
- Department of Biomedical Engineering, Pratt School of Engineering, Duke University, Durham, NC 27708, USA
| | - Xingrui Mou
- Department of Biomedical Engineering, Pratt School of Engineering, Duke University, Durham, NC 27708, USA
| | - Samira Musah
- Developmental and Stem Cell Biology Program, Department of Medicine, Duke University School of Medicine, Durham, NC 27710, USA,Department of Cell Biology, Duke University School of Medicine, Durham, NC 27710, USA,Center for Biomolecular and Tissue Engineering, Duke University, Durham, NC 27708, USA,Department of Biomedical Engineering, Pratt School of Engineering, Duke University, Durham, NC 27708, USA,Division of Nephrology, Department of Medicine, Duke University School of Medicine, Durham, NC 27710, USA,MEDx Investigator and Faculty Member at the Duke Regeneration Center, Duke University, Durham, NC 27710, USA,Author for correspondence ()
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6
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Dúzs B, Szalai I. Reaction-diffusion phenomena in antagonistic bipolar diffusion fields. Phys Chem Chem Phys 2022; 24:1814-1820. [PMID: 34986213 DOI: 10.1039/d1cp04662d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Operating natural or artificial chemical systems requires nonequilibrium conditions under which temporal and spatial control of the process is realizable. Open reaction-diffusion systems provide a general way to create such conditions. A key issue is the proper design of reactors in which the nonequilibrium conditions can be maintained. A hydrogel with flow-through channels is a simple, flexible, and easy-to-make device in which chemical reactions are performed in the diffusion field of localized separated sources of reactants. Two reactants separated in two channels create a bipolar antagonistic diffusion field, where the reaction intermediates firmly separate in space. Numerical simulations and corresponding experiments are performed to present this inhomogeneous diffusion field-induced chemical separation in sequential reactions. A remarkable result of this bipolar spatial control is localized wave phenomena in a nonlinear activatory-inhibitory reaction. These findings may help design functioning artificial nonequilibrium systems with the desired spatial separation of chemicals.
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Affiliation(s)
- Brigitta Dúzs
- Institute of Chemistry, Eötvös Loránd University, Pázmány Péter sétány 1/A, Budapest, Hungary.
| | - István Szalai
- Institute of Chemistry, Eötvös Loránd University, Pázmány Péter sétány 1/A, Budapest, Hungary.
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O'Grady BJ, Lippmann ES. Recent Advancements in Engineering Strategies for Manipulating Neural Stem Cell Behavior. ACTA ACUST UNITED AC 2020; 1:41-47. [PMID: 33748772 DOI: 10.1007/s43152-020-00003-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
Purpose of Review Stem cells are exquisitely sensitive to biophysical and biochemical cues within the native microenvironment. This review focuses on emerging strategies to manipulate neural cell behavior using these influences in three-dimensional (3D) culture systems. Recent Findings Traditional systems for neural cell differentiation typically produce heterogeneous populations with limited diversity rather than the complex, organized tissue structures observed in vivo. Advancements in developing engineering tools to direct neural cell fates can enable new applications in basic research, disease modeling, and regenerative medicine. Summary This review article highlights engineering strategies that facilitate controlled presentation of biophysical and biochemical cues to guide differentiation and impart desired phenotypes on neural cell populations. Specific highlighted examples include engineered biomaterials and microfluidic platforms for spatiotemporal control over the presentation of morphogen gradients.
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Affiliation(s)
- Brian J O'Grady
- Department of Chemical and Biomolecular Engineering, Vanderbilt University, Nashville, TN, USA
| | - Ethan S Lippmann
- Department of Chemical and Biomolecular Engineering, Vanderbilt University, Nashville, TN, USA
- Department of Biomedical Engineering, Vanderbilt University, Nashville, TN, USA
- Vanderbilt Brain Institute, Vanderbilt University, Nashville, TN, USA
- Interdisciplinary Materials Science Program, Vanderbilt University, Nashville, TN, USA
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8
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Yang J, Zhao S, Zhao D, Huang Y, Liu X, Hu W, Liu B. A capillary electrophoresis strategy to sensitively detect dynamic properties of coiled coil polypeptides. J Sep Sci 2020; 43:2201-2208. [DOI: 10.1002/jssc.202000137] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2020] [Revised: 02/25/2020] [Accepted: 02/25/2020] [Indexed: 12/11/2022]
Affiliation(s)
- Jie Yang
- Innovation Institute for Biomedical Materials, College of Life Science and ChemistryWuhan Donghu University Wuhan P. R. China
- Britton Chance Center for Biomedical Photonics at Wuhan National Laboratory for Optoelectronics‐Hubei Bioinformatics & Molecular Imaging Key Laboratory, Department of Biomedical Engineering, College of Life Science and TechnologyHuazhong University of Science and Technology Wuhan P. R. China
| | - Sun‐Duo Zhao
- Britton Chance Center for Biomedical Photonics at Wuhan National Laboratory for Optoelectronics‐Hubei Bioinformatics & Molecular Imaging Key Laboratory, Department of Biomedical Engineering, College of Life Science and TechnologyHuazhong University of Science and Technology Wuhan P. R. China
| | - Dong‐Hui Zhao
- Britton Chance Center for Biomedical Photonics at Wuhan National Laboratory for Optoelectronics‐Hubei Bioinformatics & Molecular Imaging Key Laboratory, Department of Biomedical Engineering, College of Life Science and TechnologyHuazhong University of Science and Technology Wuhan P. R. China
| | - Yan Huang
- Innovation Institute for Biomedical Materials, College of Life Science and ChemistryWuhan Donghu University Wuhan P. R. China
| | - Xiao‐Xia Liu
- Innovation Institute for Biomedical Materials, College of Life Science and ChemistryWuhan Donghu University Wuhan P. R. China
| | - Wei Hu
- Innovation Institute for Biomedical Materials, College of Life Science and ChemistryWuhan Donghu University Wuhan P. R. China
| | - Bo Liu
- Britton Chance Center for Biomedical Photonics at Wuhan National Laboratory for Optoelectronics‐Hubei Bioinformatics & Molecular Imaging Key Laboratory, Department of Biomedical Engineering, College of Life Science and TechnologyHuazhong University of Science and Technology Wuhan P. R. China
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9
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Mandrycky CJ, Williams NP, Batalov I, El-Nachef D, de Bakker BS, Davis J, Kim DH, DeForest CA, Zheng Y, Stevens KR, Sniadecki NJ. Engineering Heart Morphogenesis. Trends Biotechnol 2020; 38:835-845. [PMID: 32673587 DOI: 10.1016/j.tibtech.2020.01.006] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2019] [Revised: 01/21/2020] [Accepted: 01/23/2020] [Indexed: 12/22/2022]
Abstract
Recent advances in stem cell biology and tissue engineering have laid the groundwork for building complex tissues in a dish. We propose that these technologies are ready for a new challenge: recapitulating cardiac morphogenesis in vitro. In development, the heart transforms from a simple linear tube to a four-chambered organ through a complex process called looping. Here, we re-examine heart tube looping through the lens of an engineer and argue that the linear heart tube is an advantageous starting point for tissue engineering. We summarize the structures, signaling pathways, and stresses in the looping heart, and evaluate approaches that could be used to build a linear heart tube and guide it through the process of looping.
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Affiliation(s)
- Christian J Mandrycky
- Institute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA; Department of Bioengineering, University of Washington, Seattle, WA, USA
| | - Nisa P Williams
- Institute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA; Department of Bioengineering, University of Washington, Seattle, WA, USA
| | - Ivan Batalov
- Institute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA; Department of Bioengineering, University of Washington, Seattle, WA, USA
| | - Danny El-Nachef
- Institute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA; Department of Pathology, University of Washington, Seattle, WA, USA
| | - Bernadette S de Bakker
- Clinical Anatomy and Embryology, Department of Medical Biology, AMC, University of Amsterdam, Amsterdam, The Netherlands
| | - Jennifer Davis
- Institute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA; Department of Bioengineering, University of Washington, Seattle, WA, USA; Department of Pathology, University of Washington, Seattle, WA, USA
| | - Deok-Ho Kim
- Institute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA; Department of Bioengineering, University of Washington, Seattle, WA, USA; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205, USA; Department of Medicine/Cardiology, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA
| | - Cole A DeForest
- Institute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA; Department of Bioengineering, University of Washington, Seattle, WA, USA; Department of Chemical Engineering, University of Washington, Seattle, WA, USA
| | - Ying Zheng
- Institute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA; Department of Bioengineering, University of Washington, Seattle, WA, USA
| | - Kelly R Stevens
- Institute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA; Department of Bioengineering, University of Washington, Seattle, WA, USA; Department of Pathology, University of Washington, Seattle, WA, USA
| | - Nathan J Sniadecki
- Institute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA; Department of Bioengineering, University of Washington, Seattle, WA, USA; Department of Mechanical Engineering, University of Washington, Seattle, WA, USA.
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10
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Parittotokkaporn S, Dravid A, Bansal M, Aqrawe Z, Svirskis D, Suresh V, O’Carroll SJ. Make it simple: long-term stable gradient generation in a microfluidic microdevice. Biomed Microdevices 2019; 21:77. [DOI: 10.1007/s10544-019-0427-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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