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For: Hamabata T, Kinoshita G, Kurita K, Cao PL, Ito M, Murata J, Komaki Y, Isagi Y, Makino T. Endangered island endemic plants have vulnerable genomes. Commun Biol 2019;2:244. [PMID: 31263788 PMCID: PMC6597543 DOI: 10.1038/s42003-019-0490-7] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2018] [Accepted: 06/03/2019] [Indexed: 11/29/2022]  Open
Number Cited by Other Article(s)
1
Suetsugu K, Hirota SK, Makino T, Suyama Y, Kaneko S, Fukushima K. Genomic signature and evolutionary history of completely cleistogamous lineages in the non-photosynthetic orchid Gastrodia. Proc Biol Sci 2025;292:20250574. [PMID: 40393491 DOI: 10.1098/rspb.2025.0574] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2025] [Revised: 04/11/2025] [Accepted: 04/14/2025] [Indexed: 05/22/2025]  Open
2
Shao S, Li Y, Feng X, Jin C, Liu M, Zhu R, Tracy ME, Guo Z, He Z, Shi S, Xu S. Chromosomal-Level Genome Suggests Adaptive Constraints Leading to the Historical Population Decline in an Extremely Endangered Plant. Mol Ecol Resour 2025;25:e14045. [PMID: 39575519 DOI: 10.1111/1755-0998.14045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Revised: 10/14/2024] [Accepted: 10/28/2024] [Indexed: 03/08/2025]
3
Li D, Gao K, Chen Y, Gao H, Huang H, Ye B, Shi L, Yu H, Zhao Y. Revealing that artificial reproduction promotes increased genetic diversity between generations in Carpinus putoensis. FRONTIERS IN PLANT SCIENCE 2025;16:1494694. [PMID: 40084110 PMCID: PMC11903413 DOI: 10.3389/fpls.2025.1494694] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/09/2024] [Accepted: 02/07/2025] [Indexed: 03/16/2025]
4
Sundar Panja A. The systematic codon usage bias has an important effect on genetic adaption in native species. Gene 2024;926:148627. [PMID: 38823656 DOI: 10.1016/j.gene.2024.148627] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Revised: 05/06/2024] [Accepted: 05/29/2024] [Indexed: 06/03/2024]
5
Yin K, Chung MY, Lan B, Du FK, Chung MG. Plant conservation in the age of genome editing: opportunities and challenges. Genome Biol 2024;25:279. [PMID: 39449103 PMCID: PMC11515576 DOI: 10.1186/s13059-024-03399-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2023] [Accepted: 09/23/2024] [Indexed: 10/26/2024]  Open
6
Kou YX, Liu ML, López-Pujol J, Zhang QJ, Zhang ZY, Li ZH. Contrasting demographic history and mutational load in three threatened whitebark pines (Pinus subsect. Gerardianae): implications for conservation. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024;119:2967-2981. [PMID: 39115017 DOI: 10.1111/tpj.16965] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2024] [Revised: 07/12/2024] [Accepted: 07/25/2024] [Indexed: 11/15/2024]
7
Kryukov K, Nakahama N, Kuraku S. Genome assembly catalog for species in the Japanese Red List: unlocking endangered biodiversity through genomic inventory. F1000Res 2024;13:583. [PMID: 39050029 PMCID: PMC11267146 DOI: 10.12688/f1000research.149793.2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 07/15/2024] [Indexed: 07/27/2024]  Open
8
Kobayashi Y, Komaki Y, Isagi Y. Exploring phylogeny and genomic vulnerability of Melastoma (Melastomataceae) endemic to a World Natural Heritage site, the Bonin Islands. Sci Rep 2024;14:15668. [PMID: 39019909 PMCID: PMC11254903 DOI: 10.1038/s41598-024-65726-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2024] [Accepted: 06/24/2024] [Indexed: 07/19/2024]  Open
9
Tsunenari K, Ito T, Yokota M, Shibabayashi M, Endo C, Chung KF, Suyama Y, Matsuo A, Abe A, Naiki A, Setoguchi H, Makino T, Isagi Y. Double migration of the endangered Tricyrtis formosana (Liliaceae) in Japan. Sci Rep 2024;14:957. [PMID: 38200076 PMCID: PMC10781951 DOI: 10.1038/s41598-024-51431-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2023] [Accepted: 01/04/2024] [Indexed: 01/12/2024]  Open
10
Rajapaksha R, Zhang LB, Pushpakumara G, Wijesundara S. An analysis of the current status and future prospects of Sri Lankan pteridophytes towards a new dimension. Biologia (Bratisl) 2022. [DOI: 10.1007/s11756-022-01139-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
11
Wong DCJ, Peakall R. Orchid Phylotranscriptomics: The Prospects of Repurposing Multi-Tissue Transcriptomes for Phylogenetic Analysis and Beyond. FRONTIERS IN PLANT SCIENCE 2022;13:910362. [PMID: 35712597 PMCID: PMC9196242 DOI: 10.3389/fpls.2022.910362] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/01/2022] [Accepted: 04/21/2022] [Indexed: 06/10/2023]
12
Linan AG, Lowry Ii PP, Miller AJ, Schatz GE, Sevathian JC, Edwards CE. Interspecific hybridization and island colonization history, not rarity, most strongly affect the genetic diversity in a clade of Mascarene-endemic trees. J Hered 2022;113:336-352. [PMID: 35192705 DOI: 10.1093/jhered/esac010] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2021] [Accepted: 02/21/2022] [Indexed: 11/14/2022]  Open
13
Miao J, Farhat P, Wang W, Ruhsam M, Milne R, Yang H, Tso S, Li J, Xu J, Opgenoorth L, Miehe G, Mao K. Evolutionary history of two rare endemic conifer species from the eastern Qinghai-Tibet Plateau. ANNALS OF BOTANY 2021;128:903-918. [PMID: 34472580 PMCID: PMC8577208 DOI: 10.1093/aob/mcab114] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/20/2021] [Accepted: 09/01/2021] [Indexed: 06/13/2023]
14
Yang MY, Kim SY, Kim MS. Verification of hotspots of genetic diversity in Korean population of Grateloupia asiatica and G. jejuensis (Rhodophyta) show low genetic diversity and similar geographic distribution. Genes Genomics 2021;43:1463-1469. [PMID: 34697760 DOI: 10.1007/s13258-021-01168-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2021] [Accepted: 09/16/2021] [Indexed: 11/26/2022]
15
Evolutionary effects of geographic and climatic isolation between Rhododendron tsusiophyllum populations on the Izu Islands and mainland Honshu of Japan. Heredity (Edinb) 2021;126:859-868. [PMID: 33654179 PMCID: PMC8102576 DOI: 10.1038/s41437-021-00417-w] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2020] [Revised: 02/04/2021] [Accepted: 02/15/2021] [Indexed: 01/30/2023]  Open
16
Narita A, Nakahama N, Izuno A, Hayama K, Komaki Y, Tanaka T, Murata J, Isagi Y. Conservation genetics of critically endangered Crepidiastrum grandicollum (Asteraceae) and two closely related woody species of the Bonin Islands, Japan. CONSERV GENET 2021. [DOI: 10.1007/s10592-021-01353-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
17
Island songbirds as windows into evolution in small populations. Curr Biol 2021;31:1303-1310.e4. [PMID: 33476557 DOI: 10.1016/j.cub.2020.12.040] [Citation(s) in RCA: 41] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2020] [Revised: 10/12/2020] [Accepted: 12/23/2020] [Indexed: 11/20/2022]
18
Chiocchio A, Arntzen JW, Martínez-Solano I, de Vries W, Bisconti R, Pezzarossa A, Maiorano L, Canestrelli D. Reconstructing hotspots of genetic diversity from glacial refugia and subsequent dispersal in Italian common toads (Bufo bufo). Sci Rep 2021;11:260. [PMID: 33420098 PMCID: PMC7794404 DOI: 10.1038/s41598-020-79046-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2020] [Accepted: 12/01/2020] [Indexed: 02/01/2023]  Open
19
Gao JG, Liu H, Wang N, Yang J, Zhang XL. Plant extinction excels plant speciation in the Anthropocene. BMC PLANT BIOLOGY 2020;20:430. [PMID: 32938403 PMCID: PMC7493330 DOI: 10.1186/s12870-020-02646-3] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/27/2020] [Accepted: 09/10/2020] [Indexed: 06/11/2023]
20
Sun Y, Deng T, Zhang A, Moore MJ, Landis JB, Lin N, Zhang H, Zhang X, Huang J, Zhang X, Sun H, Wang H. Genome Sequencing of the Endangered Kingdonia uniflora (Circaeasteraceae, Ranunculales) Reveals Potential Mechanisms of Evolutionary Specialization. iScience 2020;23:101124. [PMID: 32428861 PMCID: PMC7232092 DOI: 10.1016/j.isci.2020.101124] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2020] [Revised: 03/20/2020] [Accepted: 04/29/2020] [Indexed: 12/20/2022]  Open
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