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For: Zhang W, Wang Y, Lee OO, Tian R, Cao H, Gao Z, Li Y, Yu L, Xu Y, Qian PY. Adaptation of intertidal biofilm communities is driven by metal ion and oxidative stresses. Sci Rep 2013;3:3180. [PMID: 24212283 DOI: 10.1038/srep03180] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2013] [Accepted: 10/24/2013] [Indexed: 12/15/2022]  Open
Number Cited by Other Article(s)
1
Bhowmick T, Sarkar A, Islam KH, Karmakar S, Mukherjee J, Das R. Molecular insights into cobalt homeostasis in estuarine microphytobenthos: A meta-transcriptomics and biogeochemical approach. JOURNAL OF HAZARDOUS MATERIALS 2025;490:137716. [PMID: 40024116 DOI: 10.1016/j.jhazmat.2025.137716] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2024] [Revised: 01/09/2025] [Accepted: 02/21/2025] [Indexed: 03/04/2025]
2
Yang M, Qi Y, Gao P, Li L, Guo J, Zhao Y, Liu J, Chen Z, Yu L. Changes in the assembly and functional adaptation of endophytic microbial communities in Amorphophallus species with different levels of resistance to necrotrophic bacterial pathogen stress. Commun Biol 2025;8:766. [PMID: 40389724 PMCID: PMC12089287 DOI: 10.1038/s42003-025-08196-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2024] [Accepted: 05/07/2025] [Indexed: 05/21/2025]  Open
3
Ma TF, Yu XY, Xing CY, Fu HM, Duan HY, Chen YP. Impacts of sulfamethoxazole on heterotrophic nitrification-aerobic denitrification bacteria and its response strategies: Insights from physiology to proteomics. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2025;379:124890. [PMID: 40056593 DOI: 10.1016/j.jenvman.2025.124890] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2024] [Revised: 02/04/2025] [Accepted: 03/04/2025] [Indexed: 03/10/2025]
4
Jean N, James A, Balliau T, Martino C, Ghersy J, Savar V, Laabir M, Caruana AMN. Warming and polymetallic stress induce proteomic and physiological shifts in the neurotoxic Alexandrium pacificum as possible response to global changes. MARINE POLLUTION BULLETIN 2024;209:117221. [PMID: 39522120 DOI: 10.1016/j.marpolbul.2024.117221] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2024] [Revised: 10/18/2024] [Accepted: 10/27/2024] [Indexed: 11/16/2024]
5
Wang Z, Wang J, Yu X, Zhang H, Liu J, Cao J, Fang J, Song Z, Zhang L. The metabolic characteristics and environmental adaptations of the intertidal bacterium Palleronia sp. LCG004. Front Microbiol 2024;15:1469112. [PMID: 39678919 PMCID: PMC11638410 DOI: 10.3389/fmicb.2024.1469112] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2024] [Accepted: 11/06/2024] [Indexed: 12/17/2024]  Open
6
Cui H, Lu J, Ding W, Zhang W. Genomic Features and Antimicrobial Activity of Phaeobacter inhibens Strains from Marine Biofilms. Mar Drugs 2024;22:492. [PMID: 39590772 PMCID: PMC11595833 DOI: 10.3390/md22110492] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2024] [Revised: 10/19/2024] [Accepted: 10/29/2024] [Indexed: 11/28/2024]  Open
7
Arboleda-Baena C, Freilich M, Pareja CB, Logares R, De la Iglesia R, Navarrete SA. Microbial community and network responses across strong environmental gradients: How do they compare with macroorganisms? FEMS Microbiol Ecol 2024;100:fiae017. [PMID: 38327185 PMCID: PMC10894034 DOI: 10.1093/femsec/fiae017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2023] [Revised: 01/01/2024] [Accepted: 02/06/2024] [Indexed: 02/09/2024]  Open
8
Su X, Cui H, Zhang W. Copiotrophy in a Marine-Biofilm-Derived Roseobacteraceae Bacterium Can Be Supported by Amino Acid Metabolism and Thiosulfate Oxidation. Int J Mol Sci 2023;24:ijms24108617. [PMID: 37239957 DOI: 10.3390/ijms24108617] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2023] [Revised: 04/28/2023] [Accepted: 05/02/2023] [Indexed: 05/28/2023]  Open
9
Cubillos VM, Ramírez FE, Mardones-Toledo DA, Valdivia N, Chaparro OR, Montory JA, Cruces EA. Specific plasticity of the anemone Anthopleura hermaphroditica to intertidal and subtidal environmental conditions of the Quempillén estuary. PLoS One 2023;18:e0279482. [PMID: 36603008 PMCID: PMC9815623 DOI: 10.1371/journal.pone.0279482] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2021] [Accepted: 12/08/2022] [Indexed: 01/06/2023]  Open
10
Metagenomic insights into taxonomic, functional diversity and inhibitors of microbial biofilms. Microbiol Res 2022;265:127207. [DOI: 10.1016/j.micres.2022.127207] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2022] [Revised: 04/17/2022] [Accepted: 09/18/2022] [Indexed: 11/21/2022]
11
Microbial Richness of Marine Biofilms Revealed by Sequencing Full-Length 16S rRNA Genes. Genes (Basel) 2022;13:genes13061050. [PMID: 35741812 PMCID: PMC9223118 DOI: 10.3390/genes13061050] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2022] [Revised: 06/06/2022] [Accepted: 06/07/2022] [Indexed: 01/27/2023]  Open
12
Mandal A, Dutta A, Das R, Mukherjee J. Role of intertidal microbial communities in carbon dioxide sequestration and pollutant removal: A review. MARINE POLLUTION BULLETIN 2021;170:112626. [PMID: 34153859 DOI: 10.1016/j.marpolbul.2021.112626] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/26/2020] [Revised: 06/06/2021] [Accepted: 06/08/2021] [Indexed: 05/16/2023]
13
Mohapatra M, Yadav R, Rajput V, Dharne MS, Rastogi G. Metagenomic analysis reveals genetic insights on biogeochemical cycling, xenobiotic degradation, and stress resistance in mudflat microbiome. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2021;292:112738. [PMID: 34020306 DOI: 10.1016/j.jenvman.2021.112738] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2020] [Revised: 04/05/2021] [Accepted: 04/29/2021] [Indexed: 05/22/2023]
14
Wiegand S, Rast P, Kallscheuer N, Jogler M, Heuer A, Boedeker C, Jeske O, Kohn T, Vollmers J, Kaster AK, Quast C, Glöckner FO, Rohde M, Jogler C. Analysis of Bacterial Communities on North Sea Macroalgae and Characterization of the Isolated Planctomycetes Adhaeretor mobilis gen. nov., sp. nov., Roseimaritima multifibrata sp. nov., Rosistilla ulvae sp. nov. and Rubripirellula lacrimiformis sp. nov. Microorganisms 2021;9:microorganisms9071494. [PMID: 34361930 PMCID: PMC8303584 DOI: 10.3390/microorganisms9071494] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Revised: 07/06/2021] [Accepted: 07/08/2021] [Indexed: 12/31/2022]  Open
15
Kohn T, Rast P, Kallscheuer N, Wiegand S, Boedeker C, Jetten MSM, Jeske O, Vollmers J, Kaster AK, Rohde M, Jogler M, Jogler C. The Microbiome of Posidonia oceanica Seagrass Leaves Can Be Dominated by Planctomycetes. Front Microbiol 2020;11:1458. [PMID: 32754127 PMCID: PMC7366357 DOI: 10.3389/fmicb.2020.01458] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2019] [Accepted: 06/04/2020] [Indexed: 12/20/2022]  Open
16
Wang B, Tan X, Du R, Zhao F, Zhang L, Han Y, Zhou Z. Bacterial composition of biofilms formed on dairy-processing equipment. Prep Biochem Biotechnol 2019;49:477-484. [DOI: 10.1080/10826068.2019.1587623] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
17
Elshobary ME, Becker MG, Kalichuk JL, Chan AC, Belmonte MF, Piercey-Normore MD. Tissue-specific localization of polyketide synthase and other associated genes in the lichen, Cladonia rangiferina, using laser microdissection. PHYTOCHEMISTRY 2018;156:142-150. [PMID: 30296707 DOI: 10.1016/j.phytochem.2018.09.011] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2018] [Revised: 08/25/2018] [Accepted: 09/28/2018] [Indexed: 02/05/2023]
18
Zhang W, Ding W, Yang B, Tian R, Gu S, Luo H, Qian PY. Genomic and Transcriptomic Evidence for Carbohydrate Consumption among Microorganisms in a Cold Seep Brine Pool. Front Microbiol 2016;7:1825. [PMID: 27895636 PMCID: PMC5108811 DOI: 10.3389/fmicb.2016.01825] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2016] [Accepted: 10/31/2016] [Indexed: 12/20/2022]  Open
19
Lin J. Stress responses of Acinetobacter strain Y during phenol degradation. Arch Microbiol 2016;199:365-375. [DOI: 10.1007/s00203-016-1310-9] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2016] [Revised: 08/10/2016] [Accepted: 10/17/2016] [Indexed: 12/14/2022]
20
Deciphering the recent phylogenetic expansion of the originally deeply rooted Mycobacterium tuberculosis lineage 7. BMC Evol Biol 2016;16:146. [PMID: 27363525 PMCID: PMC4929747 DOI: 10.1186/s12862-016-0715-z] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2016] [Accepted: 06/22/2016] [Indexed: 11/10/2022]  Open
21
Intraspecific Variation in Microbial Symbiont Communities of the Sun Sponge, Hymeniacidon heliophila, from Intertidal and Subtidal Habitats. Appl Environ Microbiol 2015;82:650-8. [PMID: 26567307 DOI: 10.1128/aem.02980-15] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2015] [Accepted: 11/07/2015] [Indexed: 11/20/2022]  Open
22
Zhang W, Wang Y, Bougouffa S, Tian R, Cao H, Li Y, Cai L, Wong YH, Zhang G, Zhou G, Zhang X, Bajic VB, Al-Suwailem A, Qian PY. Synchronized dynamics of bacterial niche-specific functions during biofilm development in a cold seep brine pool. Environ Microbiol 2015;17:4089-104. [DOI: 10.1111/1462-2920.12978] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2015] [Revised: 07/01/2015] [Accepted: 07/02/2015] [Indexed: 11/27/2022]
23
Yang B, Zhang W, Tian R, Wang Y, Qian PY. Changing composition of microbial communities indicates seepage fluid difference of the Thuwal Seeps in the Red Sea. Antonie van Leeuwenhoek 2015;108:461-71. [PMID: 26059861 DOI: 10.1007/s10482-015-0499-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2014] [Accepted: 06/01/2015] [Indexed: 11/26/2022]
24
Zhang W, Sun J, Ding W, Lin J, Tian R, Lu L, Liu X, Shen X, Qian PY. Extracellular matrix-associated proteins form an integral and dynamic system during Pseudomonas aeruginosa biofilm development. Front Cell Infect Microbiol 2015;5:40. [PMID: 26029669 PMCID: PMC4429628 DOI: 10.3389/fcimb.2015.00040] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2014] [Accepted: 04/27/2015] [Indexed: 12/13/2022]  Open
25
Fierer N, Barberán A, Laughlin DC. Seeing the forest for the genes: using metagenomics to infer the aggregated traits of microbial communities. Front Microbiol 2014;5:614. [PMID: 25429288 PMCID: PMC4228856 DOI: 10.3389/fmicb.2014.00614] [Citation(s) in RCA: 68] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2014] [Accepted: 10/28/2014] [Indexed: 02/03/2023]  Open
26
Zhang WP, Wang Y, Tian RM, Bougouffa S, Yang B, Cao HL, Zhang G, Wong YH, Xu W, Batang Z, Al-Suwailem A, Zhang XX, Qian PY. Species sorting during biofilm assembly by artificial substrates deployed in a cold seep system. Sci Rep 2014;4:6647. [PMID: 25323200 PMCID: PMC4200420 DOI: 10.1038/srep06647] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2014] [Accepted: 07/07/2014] [Indexed: 11/09/2022]  Open
27
Lee OO, Wang Y, Tian R, Zhang W, Shek CS, Bougouffa S, Al-Suwailem A, Batang ZB, Xu W, Wang GC, Zhang X, Lafi FF, Bajic VB, Qian PY. In situ environment rather than substrate type dictates microbial community structure of biofilms in a cold seep system. Sci Rep 2014;4:3587. [PMID: 24399144 PMCID: PMC5378041 DOI: 10.1038/srep03587] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2013] [Accepted: 12/05/2013] [Indexed: 02/05/2023]  Open
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