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Chen J, Li XN, Lu CC, Yuan S, Yung G, Ye J, Tian H, Lin J. Considerations for master protocols using external controls. J Biopharm Stat 2025; 35:297-319. [PMID: 38363805 DOI: 10.1080/10543406.2024.2311248] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2023] [Accepted: 01/24/2024] [Indexed: 02/18/2024]
Abstract
There has been an increasing use of master protocols in oncology clinical trials because of its efficiency to accelerate cancer drug development and flexibility to accommodate multiple substudies. Depending on the study objective and design, a master protocol trial can be a basket trial, an umbrella trial, a platform trial, or any other form of trials in which multiple investigational products and/or subpopulations are studied under a single protocol. Master protocols can use external data and evidence (e.g. external controls) for treatment effect estimation, which can further improve efficiency of master protocol trials. This paper provides an overview of different types of external controls and their unique features when used in master protocols. Some key considerations in master protocols with external controls are discussed including construction of estimands, assessment of fit-for-use real-world data, and considerations for different types of master protocols. Similarities and differences between regular randomized controlled trials and master protocols when using external controls are discussed. A targeted learning-based causal roadmap is presented which constitutes three key steps: (1) define a target statistical estimand that aligns with the causal estimand for the study objective, (2) use an efficient estimator to estimate the target statistical estimand and its uncertainty, and (3) evaluate the impact of causal assumptions on the study conclusion by performing sensitivity analyses. Two illustrative examples for master protocols using external controls are discussed for their merits and possible improvement in causal effect estimation.
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Affiliation(s)
- Jie Chen
- Data Sciences, ECR Global, Shanghai, China
| | | | | | - Sammy Yuan
- Oncology Statistics, GlaxoSmithKline, Collegeville, Pennsylvania, USA
| | - Godwin Yung
- Product Development Data and Statistical Sciences, Genentech/Roche, South San Francisco, Cambridge, USA
| | - Jingjing Ye
- Global Statistics and Data Sciences, BeiGene, Fulton, Maryland, USA
| | - Hong Tian
- Global Statistics, BeiGene, Ridgefield Park, New Jersy, USA
| | - Jianchang Lin
- Statistical & Quantitative Sciences, Takeda, Cambridge, Massachusetts, USA
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2
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Pinilla J, López-Valcárcel BG, Bernal-Delgado E. Unravelling risk selection in Spanish general government employee mutual funds: evidence from cancer hospitalizations in the public health network. THE EUROPEAN JOURNAL OF HEALTH ECONOMICS : HEPAC : HEALTH ECONOMICS IN PREVENTION AND CARE 2024; 25:1371-1381. [PMID: 38376648 PMCID: PMC11442635 DOI: 10.1007/s10198-024-01671-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Accepted: 01/10/2024] [Indexed: 02/21/2024]
Abstract
Government employees in Spain are covered by public Mutual Funds that purchase a uniform basket of benefits, equal to the ones served to the general population, from private companies. Companies apply as private bidders for a fixed per capita premium hardly adjusted by age. Our hypothesis is that this premium does not cover risks, and companies have incentives for risk selection, which are more visible in high-cost patients. We focus on a particularly costly disease, cancer, whose prevalence is similar among government employees and the general population. We compare hospitalisations in the public hospitals of the government employees that have chosen public provision and the general population. We analysed a database of hospital discharges in the Valencian Community from 2010 to 2015 (3 million episodes). Using exact matching and logistic models, we find significant risk selection; thus, in hospitalised government employees, the likelihood for a solid metastatic carcinoma and non-metastatic cancer to appear in the registry is 31% higher than in the general population. Lymphoma shows the highest odds ratio of 2.64. We found quantitatively important effects. This research provides indirect evidence of risk selection within Spanish Mutual Funds for government employees, prompting action to reduce incentives for such a practice. More research is needed to figure out if what we have observed with cancer patients occurs in other conditions.
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Affiliation(s)
- Jaime Pinilla
- Department of Quantitative Methods for Economics and Management, Faculty of Economy, Business and Tourism, University of Las Palmas de Gran Canaria, Campus de Tafira, 34-35017, Las Palmas de Gran Canaria, Spain.
| | - Beatriz G López-Valcárcel
- Department of Quantitative Methods for Economics and Management, Faculty of Economy, Business and Tourism, University of Las Palmas de Gran Canaria, Campus de Tafira, 34-35017, Las Palmas de Gran Canaria, Spain
| | - Enrique Bernal-Delgado
- Data Science for Health Services and Policy Research Group, Aragon Health Sciences Institute, Institute for Health Sciences (IACS), San Juan Bosco 13 (CIBA Building), 50009, Zaragoza, Spain
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3
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Rigdon J, Ostasiewski B, Woelfel K, Wiseman KD, Hetherington T, Downs S, Kowalkowski M. Automated generation of comparator patients in the electronic medical record. Learn Health Syst 2024; 8:e10362. [PMID: 38249842 PMCID: PMC10797581 DOI: 10.1002/lrh2.10362] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2022] [Revised: 02/17/2023] [Accepted: 02/18/2023] [Indexed: 03/30/2023] Open
Abstract
Background Well-designed randomized trials provide high-quality clinical evidence but are not always feasible or ethical. In their absence, the electronic medical record (EMR) presents a platform to conduct comparative effectiveness research, central to the emerging academic learning health system (aLHS) model. A barrier to realizing this vision is the lack of a process to efficiently generate a reference comparison group for each patient. Objective To test a multi-step process for the selection of comparators in the EMR. Materials and Methods We conducted a mixed-methods study within a large aLHS in North Carolina. We (1) created a list of 35 candidate variables; (2) surveyed 270 researchers to assess the importance of candidate variables; and (3) built consensus rankings around survey-identified variables (ie, importance scores >7) across two panels of 7-8 clinical research experts. Prioritized algorithm inputs were collected from the EMR and applied using a greedy matching technique. Feasibility was measured as the percentage of patients with 100 matched comparators and performance was measured via computational time and Euclidean distance. Results Nine variables were selected: age, sex, race, ethnicity, body mass index, insurance status, smoking status, Charlson Comorbidity Index, and neighborhood percentage in poverty. The final process successfully generated 100 matched comparators for each of 1.8 million candidate patients, executed in less than 100 min for the majority of strata, and had average Euclidean distance 0.043. Conclusion EMR-derived matching is feasible to implement across a diverse patient population and can provide a reproducible, efficient source of comparator data for observational studies, with additional testing in clinical research applications needed.
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Affiliation(s)
- Joseph Rigdon
- Department of Biostatistics and Data ScienceWake Forest University School of MedicineWinston‐SalemNorth CarolinaUSA
- Center for Biomedical InformaticsWake Forest University School of MedicineWinston‐SalemNorth CarolinaUSA
- Clinical and Translational Science InstituteWake Forest University School of MedicineWinston‐SalemNorth CarolinaUSA
| | - Brian Ostasiewski
- Center for Biomedical InformaticsWake Forest University School of MedicineWinston‐SalemNorth CarolinaUSA
- Clinical and Translational Science InstituteWake Forest University School of MedicineWinston‐SalemNorth CarolinaUSA
| | - Kamah Woelfel
- Clinical and Translational Science InstituteWake Forest University School of MedicineWinston‐SalemNorth CarolinaUSA
| | - Kimberly D. Wiseman
- Department of Social Sciences and Health PolicyWake Forest University School of MedicineWinston‐SalemNorth CarolinaUSA
| | - Tim Hetherington
- Clinical and Translational Science InstituteWake Forest University School of MedicineWinston‐SalemNorth CarolinaUSA
| | - Stephen Downs
- Center for Biomedical InformaticsWake Forest University School of MedicineWinston‐SalemNorth CarolinaUSA
| | - Marc Kowalkowski
- Clinical and Translational Science InstituteWake Forest University School of MedicineWinston‐SalemNorth CarolinaUSA
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Davis EC, Sohngen B, Lewis DJ. The effect of carbon fertilization on naturally regenerated and planted US forests. Nat Commun 2022; 13:5490. [PMID: 36123337 PMCID: PMC9485135 DOI: 10.1038/s41467-022-33196-x] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2022] [Accepted: 09/08/2022] [Indexed: 11/24/2022] Open
Abstract
Over the last half century in the United States, the per-hectare volume of wood in trees has increased, but it is not clear whether this increase has been driven by forest management, forest recovery from past land uses, such as agriculture, or other environmental factors such as elevated carbon dioxide, nitrogen deposition, or climate change. This paper uses empirical analysis to estimate the effect of elevated carbon dioxide on aboveground wood volume in temperate forests of the United States. To accomplish this, we employ matching techniques that allow us to disentangle the effects of elevated carbon dioxide from other environmental factors affecting wood volume and to estimate the effects separately for planted and natural stands. We show that elevated carbon dioxide has had a strong and consistently positive effect on wood volume while other environmental factors yielded a mix of both positive and negative effects. This study, by enabling a better understanding of how elevated carbon dioxide and other anthropogenic factors are influencing forest stocks, can help policymakers and other stakeholders better account for the role of forests in Nationally Determined Contributions and global mitigation pathways to achieve a 1.5 degree Celsius target. The CO2 fertilisation effect in forests remains controversial. Here, the authors disentangle the effect of CO2 on forest wood volume from other environmental factors, showing that elevated CO2 had a positive effect on wood volume in planted and natural US temperate forests.
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Affiliation(s)
- Eric C Davis
- United States Department of Agriculture-Economic Research Service, Kansas City, MO, 64105, USA.
| | - Brent Sohngen
- Department of Agricultural, Environmental, and Development Economics, The Ohio State University, Columbus, OH, 43210, USA
| | - David J Lewis
- Department of Applied Economics, College of Agricultural Sciences, Oregon State University, Corvallis, OR, 97331, USA
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Prajapati HP, Singh DK. Recurrent glioblastoma in elderly: Options and decision for the treatment. Surg Neurol Int 2022; 13:397. [PMID: 36128156 PMCID: PMC9479573 DOI: 10.25259/sni_552_2022] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2022] [Accepted: 08/18/2022] [Indexed: 11/29/2022] Open
Abstract
Background: Glioblastoma (GBM) is the most common primary malignant brain tumor in adult. Its incidence increases with age and nearly half of the all newly diagnosed GBM cases are older than 65 years. Management of GBM in elderly is challenging and recurrence poses further challenge. This article aims to review the literature, evaluate the various options, and to decide the treatment plan in elderly cases with GBM recurrence. Methods: A systemic search was performed with the phrase “recurrent GBM (rGBM) in elderly and management” as a search term in PubMed central, Medline, and Embase databases to identify all the articles published on the subject till February 2022. The review included peer-reviewed original articles, review articles, clinical trials, and keywords in title and abstract. Results: Out of 473 articles searched, 15 studies followed our inclusion criteria and were included in this review. In 15 studies, ten were original and five were review articles. The minimum age group included in these studies was ≥65 years. Out of 15 studies, eight studies had described the role of resurgery, four chemotherapy, three resurgery and/or chemotherapy, and only one study on role of reradiotherapy in patients with rGBM. Out of eight studies described the role of resurgery, six have mentioned improved survival and two have no survival advantage of resurgery in cases of rGBM. Conclusion: Resurgery is the main treatment option in selected elderly rGBM cases in good performance status. In patients with poor performance status, chemotherapy has better post progression survival than best supportive care.
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Affiliation(s)
| | - Deepak Kumar Singh
- Department of Neurosurgery, Dr. Ram Manohar Lohia Institute of Medical Sciences, Lucknow, Uttar Pradesh, India
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Gruber S, Lee H, Phillips R, Ho M, van der Laan M. Developing a Targeted Learning-Based Statistical Analysis Plan. Stat Biopharm Res 2022. [DOI: 10.1080/19466315.2022.2116104] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2022]
Affiliation(s)
| | - Hana Lee
- Office of Biostatistics, Center for Drug Evaluation and Research, U.S. Food and Drug Administration
| | - Rachael Phillips
- Department of Biostatistics, University of California at Berkeley
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Frequency and Consequences of Cervical Lymph Node Overstaging in Head and Neck Carcinoma. Diagnostics (Basel) 2022; 12:diagnostics12061377. [PMID: 35741189 PMCID: PMC9221862 DOI: 10.3390/diagnostics12061377] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2022] [Revised: 05/19/2022] [Accepted: 05/30/2022] [Indexed: 12/10/2022] Open
Abstract
Clinical lymph node staging in head and neck carcinoma (HNC) is fraught with uncertainties. Established clinical algorithms are available for the problem of occult cervical metastases. Much less is known about clinical lymph node overstaging. We identified HNC patients clinically classified as lymph node positive (cN+), in whom surgical neck dissection (ND) specimens were histopathologically negative (pN0) and in addition the subgroup, in whom an originally planned postoperative radiotherapy (PORT) was omitted. We compared these patients with surgically treated patients with clinically and histopathologically negative neck (cN0/pN0), who had received selective ND. Using a fuzzy matching algorithm, we identified patients with closely similar patient and disease characteristics, who had received primary definitive radiotherapy (RT) with or without systemic therapy (RT ± ST). Of the 980 patients with HNC, 292 received a ND as part of primary treatment. In 128/292 patients with cN0 neck, ND was elective, and in 164 patients with clinically positive neck (cN+), ND was therapeutic. In 43/164 cN+ patients, ND was histopathologically negative (cN+/pN−). In 24 of these, initially planned PORT was omitted. Overall, survival did not differ from the cN0/pN0 and primary RT ± ST control groups. However, more RT ± ST patients had functional problems with nutrition (p = 0.002). Based on these data, it can be estimated that lymph node overstaging is 26% (95% CI: 20% to 34%). In 15% (95% CI: 10% to 21%) of surgically treated cN+ HNC patients, treatment can be de-escalated without the affection of survival.
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Gong X, Hu M, Basu M, Zhao L. Heterogeneous treatment effect analysis based on machine-learning methodology. CPT-PHARMACOMETRICS & SYSTEMS PHARMACOLOGY 2021; 10:1433-1443. [PMID: 34716669 PMCID: PMC8592515 DOI: 10.1002/psp4.12715] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Revised: 09/08/2021] [Accepted: 09/15/2021] [Indexed: 11/25/2022]
Abstract
Heterogeneous treatment effect (HTE) analysis focuses on examining varying treatment effects for individuals or subgroups in a population. For example, an HTE‐informed understanding can critically guide physicians to individualize the medical treatment for a certain disease. However, HTE analysis has not been widely recognized and used, even given the explosive increase of data availability attributed to the arrival of the Big Data era. Part of the reason behind its underuse is that data are often of high dimension and high complexity, which pose significant challenges for applying conventional HTE analysis methods. To meet these challenges, a newly developed causal forest HTE method has been derived from the random forest machine‐learning algorithm. We conducted a systematic performance evaluation for the causal forest method against the conventional two‐step method by simulating scenarios with different levels of complexity for the analysis. Our results show that causal forest outperforms the conventional HTE method in assessing treatment effect, especially when data are complex (e.g., nonlinear) and high dimensional, suggesting that causal forest is a promising tool for real‐world applications of HTE analysis.
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Affiliation(s)
- Xiajing Gong
- Office of Research and Standards, Office of Generic Drugs, Center for Drug Evaluation and Research, Food and Drug Administration, Silver Spring, Maryland, USA
| | - Meng Hu
- Office of Research and Standards, Office of Generic Drugs, Center for Drug Evaluation and Research, Food and Drug Administration, Silver Spring, Maryland, USA
| | - Mahashweta Basu
- Office of Research and Standards, Office of Generic Drugs, Center for Drug Evaluation and Research, Food and Drug Administration, Silver Spring, Maryland, USA
| | - Liang Zhao
- Office of Research and Standards, Office of Generic Drugs, Center for Drug Evaluation and Research, Food and Drug Administration, Silver Spring, Maryland, USA
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Webb EJD, Kind P, Meads D, Martin A. Does a health crisis change how we value health? HEALTH ECONOMICS 2021; 30:2547-2560. [PMID: 34302310 DOI: 10.1002/hec.4399] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Revised: 07/07/2021] [Accepted: 07/08/2021] [Indexed: 05/03/2023]
Abstract
General population health state values are used in healthcare resource allocation, including health technology assessment. We examine whether UK general population health valuations changed during the COVID-19 pandemic. Ratings of EQ-5D-5L health states 11111 (no problems), 55555 (extreme problems), and dead were collected in a UK general population survey during the pandemic (April-May 2020) using the 0 = worst imaginable health, 100 = best imaginable health visual analog scale (EQ-VAS). Ratings for 55555 were transformed to a full health = 1, dead = 0 scale. Responses were compared to similar data collected pre-pandemic (2018). After propensity score matching to minimize sample differences, EQ-VAS responses were analyzed using Tobit regressions. On the 0-100 scale, 11111 was rated on average 8.67 points lower, 55555 rated 9.56 points higher, and dead rated 7.45 points lower post-pandemic onset compared to pre-pandemic. On the full health = 1, dead = 0 scale, 55555 values were 0.09 higher post-pandemic onset. There was evidence of differential impacts of COVID-19 by gender, age, and ethnicity, although only age impacted values on the 1-0 scale. COVID-19 may have affected how people value health. It is unknown whether the effect is large enough to have policy relevance, but caution should be taken in assuming pre-COVID-19 values are unchanged.
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Affiliation(s)
- Edward J D Webb
- Academic Unit of Health Economics, Leeds Institute of Health Sciences, University of Leeds, Leeds, UK
| | - Paul Kind
- Academic Unit of Health Economics, Leeds Institute of Health Sciences, University of Leeds, Leeds, UK
| | - David Meads
- Academic Unit of Health Economics, Leeds Institute of Health Sciences, University of Leeds, Leeds, UK
| | - Adam Martin
- Academic Unit of Health Economics, Leeds Institute of Health Sciences, University of Leeds, Leeds, UK
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10
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Greifer N, Stuart EA. Matching Methods for Confounder Adjustment: An Addition to the Epidemiologist's Toolbox. Epidemiol Rev 2021; 43:118-129. [PMID: 34109972 DOI: 10.1093/epirev/mxab003] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2021] [Revised: 06/04/2021] [Accepted: 06/07/2021] [Indexed: 11/13/2022] Open
Abstract
Propensity score weighting and outcome regression are popular ways to adjust for observed confounders in epidemiological research. Here, we provide an introduction to matching methods, which serve the same purpose but can offer advantages in robustness and performance. A key difference between matching and weighting methods is that matching methods do not directly rely on the propensity score and so are less sensitive to its misspecification or to the presence of extreme values. Matching methods offer many options for customization, which allow a researcher to incorporate substantive knowledge and carefully manage bias/variance trade-offs in estimating the effects of nonrandomized exposures. We review these options and their implications, providing guidance for their use, and comparison with weighting methods. Because of their potential advantages over other methods, matching methods should have their place in an epidemiologist's methodological toolbox.
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Affiliation(s)
- Noah Greifer
- Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, United States.,Department of Health Policy and Management, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, United States
| | - Elizabeth A Stuart
- Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, United States.,Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, United States
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11
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Robertson SE, Leith A, Schmid CH, Dahabreh IJ. Assessing Heterogeneity of Treatment Effects in Observational Studies. Am J Epidemiol 2021; 190:1088-1100. [PMID: 33083822 DOI: 10.1093/aje/kwaa235] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2019] [Revised: 10/12/2020] [Accepted: 10/16/2020] [Indexed: 01/21/2023] Open
Abstract
Here we describe methods for assessing heterogeneity of treatment effects over prespecified subgroups in observational studies, using outcome-model-based (g-formula), inverse probability weighting, doubly robust, and matching estimators of subgroup-specific potential outcome means, conditional average treatment effects, and measures of heterogeneity of treatment effects. We compare the finite-sample performance of different estimators in simulation studies where we vary the total sample size, the relative frequency of each subgroup, the magnitude of treatment effect in each subgroup, and the distribution of baseline covariates, for both continuous and binary outcomes. We find that the estimators' bias and variance vary substantially in finite samples, even when there is no unobserved confounding and no model misspecification. As an illustration, we apply the methods to data from the Coronary Artery Surgery Study (August 1975-December 1996) to compare the effect of surgery plus medical therapy with that of medical therapy alone for chronic coronary artery disease in subgroups defined by previous myocardial infarction or left ventricular ejection fraction.
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Dadi AF, Miller ER, Woodman RJ, Azale T, Mwanri L. Effect of perinatal depression on risk of adverse infant health outcomes in mother-infant dyads in Gondar town: a causal analysis. BMC Pregnancy Childbirth 2021; 21:255. [PMID: 33771103 PMCID: PMC7995776 DOI: 10.1186/s12884-021-03733-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2020] [Accepted: 03/08/2021] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Approximately one-third of pregnant and postnatal women in Ethiopia experience depression posing a substantial health burden for these women and their families. Although associations between postnatal depression and worse infant health have been observed, there have been no studies to date assessing the causal effects of perinatal depression on infant health in Ethiopia. We applied longitudinal data and recently developed causal inference methods that reduce the risk of bias to estimate associations between perinatal depression and infant diarrhea, Acute Respiratory Infection (ARI), and malnutrition in Gondar Town, Ethiopia. METHODS A cohort of 866 mother-infant dyads were followed from infant birth for 6 months and the cumulative incidence of ARI, diarrhea, and malnutrition were assessed. The Edinburgh Postnatal Depression Scale (EPDS) was used to assess the presence of maternal depression, the Integrated Management of Newborn and Childhood Illnesses (IMNCI) guidelines were used to identify infant ARI and diarrhea, and the mid upper arm circumference (MUAC) was used to identify infant malnutrition. The risk difference (RD) due to maternal depression for each outcome was estimated using targeted maximum likelihood estimation (TMLE), a doubly robust causal inference method used to reduce bias in observational studies. RESULTS The cumulative incidence of diarrhea, ARI and malnutrition during 6-month follow-up was 17.0% (95%CI: 14.5, 19.6), 21.6% (95%CI: 18.89, 24.49), and 14.4% (95%CI: 12.2, 16.9), respectively. There was no association between antenatal depression and ARI (RD = - 1.3%; 95%CI: - 21.0, 18.5), diarrhea (RD = 0.8%; 95%CI: - 9.2, 10.9), or malnutrition (RD = -7.3%; 95%CI: - 22.0, 21.8). Similarly, postnatal depression was not associated with diarrhea (RD = -2.4%; 95%CI: - 9.6, 4.9), ARI (RD = - 3.2%; 95%CI: - 12.4, 5.9), or malnutrition (RD = 0.9%; 95%CI: - 7.6, 9.5). CONCLUSION There was no evidence for an association between perinatal depression and the risk of infant diarrhea, ARI, and malnutrition amongst women in Gondar Town. Previous reports suggesting increased risks resulting from maternal depression may be due to unobserved confounding.
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Affiliation(s)
- Abel Fekadu Dadi
- Department of Epidemiology and Biostatistics, Institute of Public Health, College of Medicine and Health Sciences, University of Gondar, Gondar, Ethiopia.
- Flinders University, College of Medicine and Public health, Health Sciences Building, Sturt Road, Bedford Park, Adelaide, SA, 5054, Australia.
| | - Emma R Miller
- Flinders University, College of Medicine and Public health, Health Sciences Building, Sturt Road, Bedford Park, Adelaide, SA, 5054, Australia
| | - Richard J Woodman
- Flinders University, College of Medicine and Public health, Health Sciences Building, Sturt Road, Bedford Park, Adelaide, SA, 5054, Australia
| | - Telake Azale
- Department of Health promotion and Behavioral sciences, Institute of Public Health, College of Medicine and Health Sciences, University of Gondar, Gondar, Ethiopia
| | - Lillian Mwanri
- Flinders University, College of Medicine and Public health, Health Sciences Building, Sturt Road, Bedford Park, Adelaide, SA, 5054, Australia
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Ho M, van der Laan M, Lee H, Chen J, Lee K, Fang Y, He W, Irony T, Jiang Q, Lin X, Meng Z, Mishra-Kalyani P, Rockhold F, Song Y, Wang H, White R. The Current Landscape in Biostatistics of Real-World Data and Evidence: Causal Inference Frameworks for Study Design and Analysis. Stat Biopharm Res 2021. [DOI: 10.1080/19466315.2021.1883475] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
| | | | | | - Jie Chen
- Overland Pharmaceuticals, Dover, DE
| | - Kwan Lee
- Janssen Research and Development, Spring House, PA
| | - Yixin Fang
- Global Medical Affairs Statistics, Data and Statistical Sciences, AbbVie, North Chicago, IL
| | - Weili He
- Global Medical Affairs Statistics, Data and Statistical Sciences, AbbVie, North Chicago, IL
| | | | | | - Xiwu Lin
- Janssen Research and Development, Spring House, PA
| | | | | | - Frank Rockhold
- Duke Clinical Research Institute and Duke University Medical Center, Duke University, Durham, NC
| | | | - Hongwei Wang
- Global Medical Affairs Statistics, Data and Statistical Sciences, AbbVie, North Chicago, IL
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Ribas LGS, Pressey RL, Bini LM. Estimating counterfactuals for evaluation of ecological and conservation impact: an introduction to matching methods. Biol Rev Camb Philos Soc 2021; 96:1186-1204. [PMID: 33682321 DOI: 10.1111/brv.12697] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2020] [Revised: 02/08/2021] [Accepted: 02/09/2021] [Indexed: 01/21/2023]
Abstract
Matching methods encompass non-parametric approaches to estimating counterfactual states through a rigorous selection of control units with similar characteristics to units submitted to an intervention. These methods enable comparisons between treated and control units in a way that facilitates understanding of causal relationships between interventions and outcomes. Matching methods have been used only recently in ecology and conservation biology, where such applications changed the way the field investigates causal questions, for example, in impact-evaluation studies. However, the strengths and limitations of matching methods are not well understood by most ecologists and environmental scientists. Herein, we review state-of-the-art matching methods aiming to help fill this gap in understanding. First, we present relevant theoretical concepts related to matching methods and related subjects such as counterfactual states and causation. Next, we propose guidelines and strategies for the application of matching methods in ecology and conservation biology. Finally, we discuss the possibilities for future applications of matching methods in the environmental sciences.
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Affiliation(s)
- Luiz G S Ribas
- Departamento de Ecologia, Universidade Federal de Goiás (UFG), Avenida Esperança s/n, Campus Samambaia, Goiânia, Goiás, CEP 74.690-900, Brazil
| | - Robert L Pressey
- Australian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Queensland, Australia
| | - Luis M Bini
- Departamento de Ecologia, Universidade Federal de Goiás (UFG), Avenida Esperança s/n, Campus Samambaia, Goiânia, Goiás, CEP 74.690-900, Brazil
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15
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Keele L, Small DS. Comparing Covariate Prioritization via Matching to Machine Learning Methods for Causal Inference Using Five Empirical Applications. AM STAT 2021. [DOI: 10.1080/00031305.2020.1867638] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
- Luke Keele
- Department of Surgery, University of Pennsylvania, Philadelphia, PA
| | - Dylan S. Small
- Department of Surgery, University of Pennsylvania, Philadelphia, PA
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16
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Le Borgne F, Chatton A, Léger M, Lenain R, Foucher Y. G-computation and machine learning for estimating the causal effects of binary exposure statuses on binary outcomes. Sci Rep 2021; 11:1435. [PMID: 33446866 PMCID: PMC7809122 DOI: 10.1038/s41598-021-81110-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2020] [Accepted: 12/24/2020] [Indexed: 11/09/2022] Open
Abstract
In clinical research, there is a growing interest in the use of propensity score-based methods to estimate causal effects. G-computation is an alternative because of its high statistical power. Machine learning is also increasingly used because of its possible robustness to model misspecification. In this paper, we aimed to propose an approach that combines machine learning and G-computation when both the outcome and the exposure status are binary and is able to deal with small samples. We evaluated the performances of several methods, including penalized logistic regressions, a neural network, a support vector machine, boosted classification and regression trees, and a super learner through simulations. We proposed six different scenarios characterised by various sample sizes, numbers of covariates and relationships between covariates, exposure statuses, and outcomes. We have also illustrated the application of these methods, in which they were used to estimate the efficacy of barbiturates prescribed during the first 24 h of an episode of intracranial hypertension. In the context of GC, for estimating the individual outcome probabilities in two counterfactual worlds, we reported that the super learner tended to outperform the other approaches in terms of both bias and variance, especially for small sample sizes. The support vector machine performed well, but its mean bias was slightly higher than that of the super learner. In the investigated scenarios, G-computation associated with the super learner was a performant method for drawing causal inferences, even from small sample sizes.
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Affiliation(s)
- Florent Le Borgne
- INSERM UMR 1246 - SPHERE, Nantes University, Tours University, 22 Boulevard Bénoni Goullin, 44200, Nantes, France.,IDBC-A2COM, Pacé, France
| | - Arthur Chatton
- INSERM UMR 1246 - SPHERE, Nantes University, Tours University, 22 Boulevard Bénoni Goullin, 44200, Nantes, France.,IDBC-A2COM, Pacé, France
| | - Maxime Léger
- INSERM UMR 1246 - SPHERE, Nantes University, Tours University, 22 Boulevard Bénoni Goullin, 44200, Nantes, France.,Département D'Anesthésie Réanimation, Centre Hospitalier Universitaire D'Angers, Angers, France
| | - Rémi Lenain
- INSERM UMR 1246 - SPHERE, Nantes University, Tours University, 22 Boulevard Bénoni Goullin, 44200, Nantes, France.,Lille University Hospital, Lille, France
| | - Yohann Foucher
- INSERM UMR 1246 - SPHERE, Nantes University, Tours University, 22 Boulevard Bénoni Goullin, 44200, Nantes, France. .,Nantes University Hospital, Nantes, France.
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17
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Nardone A, Rudolph KE, Morello-Frosch R, Casey JA. Redlines and Greenspace: The Relationship between Historical Redlining and 2010 Greenspace across the United States. ENVIRONMENTAL HEALTH PERSPECTIVES 2021; 129:17006. [PMID: 33502254 PMCID: PMC7839347 DOI: 10.1289/ehp7495] [Citation(s) in RCA: 158] [Impact Index Per Article: 39.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Revised: 12/17/2020] [Accepted: 12/18/2020] [Indexed: 05/17/2023]
Abstract
INTRODUCTION Redlining, a racist mortgage appraisal practice of the 1930s, established and exacerbated racial residential segregation boundaries in the United States. Investment risk grades assigned >80y ago through security maps from the Home Owners' Loan Corporation (HOLC) are associated with current sociodemographics and adverse health outcomes. We assessed whether historical HOLC investment grades are associated with 2010 greenspace, a health-promoting neighborhood resource. OBJECTIVES We compared 2010 normalized difference vegetation index (NDVI) across previous HOLC neighborhood grades using propensity score restriction and matching. METHODS Security map shapefiles were downloaded from the Mapping Inequality Project. Neighborhood investment risk grades included A (best, green), B (blue), C (yellow), and D (hazardous, red, i.e., redlined). We used 2010 satellite imagery to calculate the average NDVI for each HOLC neighborhood. Our main outcomes were 2010 annual average NDVI and summer NDVI. We assigned areal-apportioned 1940 census measures to each HOLC neighborhood. We used propensity score restriction, matching, and targeted maximum likelihood estimation to limit model extrapolation, reduce confounding, and estimate the association between HOLC grade and NDVI for the following comparisons: Grades B vs. A, C vs. B, and D vs. C. RESULTS Across 102 urban areas (4,141 HOLC polygons), annual average ±standard deviation (SD) 2010 NDVI was 0.47 (±0.09), 0.43 (±0.09), 0.39 (±0.09), and 0.36 (±0.10) in Grades A-D, respectively. In analyses adjusted for current ecoregion and census region, 1940s census measures, and 1940s population density, annual average NDVI values in 2010 were estimated at -0.039 (95% CI: -0.045, -0.034), -0.024 (95% CI: -0.030, -0.018), and -0.026 (95% CI: -0.037, -0.015) for Grades B vs. A, C vs. B, and D vs. C, respectively, in the 1930s. DISCUSSION Estimates adjusted for historical characteristics indicate that neighborhoods assigned worse HOLC grades in the 1930s are associated with reduced present-day greenspace. https://doi.org/10.1289/EHP7495.
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Affiliation(s)
- Anthony Nardone
- University of California (UC) Berkeley–UC San Francisco (UCSF) Joint Medical Program, UC Berkeley School of Public Health and UCSF School of Medicine, Berkeley and San Francisco, California, USA
| | - Kara E. Rudolph
- Department of Epidemiology, Columbia University Mailman School of Public Health, New York, New York, USA
| | - Rachel Morello-Frosch
- School of Public Health and Department of Environmental Science, Policy and Management, UC Berkeley, Berkeley, California, USA
| | - Joan A. Casey
- Department of Environmental Health Sciences, Columbia University Mailman School of Public Health, New York, New York, USA
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18
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Webster-Clark M, Stürmer T, Wang T, Man K, Marinac-Dabic D, Rothman KJ, Ellis AR, Gokhale M, Lunt M, Girman C, Glynn RJ. Using propensity scores to estimate effects of treatment initiation decisions: State of the science. Stat Med 2020; 40:1718-1735. [PMID: 33377193 DOI: 10.1002/sim.8866] [Citation(s) in RCA: 56] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2020] [Revised: 12/11/2020] [Accepted: 12/14/2020] [Indexed: 02/02/2023]
Abstract
Confounding can cause substantial bias in nonexperimental studies that aim to estimate causal effects. Propensity score methods allow researchers to reduce bias from measured confounding by summarizing the distributions of many measured confounders in a single score based on the probability of receiving treatment. This score can then be used to mitigate imbalances in the distributions of these measured confounders between those who received the treatment of interest and those in the comparator population, resulting in less biased treatment effect estimates. This methodology was formalized by Rosenbaum and Rubin in 1983 and, since then, has been used increasingly often across a wide variety of scientific disciplines. In this review article, we provide an overview of propensity scores in the context of real-world evidence generation with a focus on their use in the setting of single treatment decisions, that is, choosing between two therapeutic options. We describe five aspects of propensity score analysis: alignment with the potential outcomes framework, implications for study design, estimation procedures, implementation options, and reporting. We add context to these concepts by highlighting how the types of comparator used, the implementation method, and balance assessment techniques have changed over time. Finally, we discuss evolving applications of propensity scores.
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Affiliation(s)
| | - Til Stürmer
- Department of Epidemiology, UNC Chapel Hill, Chapel Hill, North Carolina, USA
| | - Tiansheng Wang
- Department of Epidemiology, UNC Chapel Hill, Chapel Hill, North Carolina, USA
| | - Kenneth Man
- Research Department of Practice and Policy, UCL School of Pharmacy, London, UK.,Department of Pharmacology and Pharmacy, LKS Faculty of Medicine, University of Hong Kong, Hong Kong
| | - Danica Marinac-Dabic
- Office of Clinical Evidence and Analysis, FDA Center for Devices and Radiological Health, Silver Springs, Maryland, USA
| | - Kenneth J Rothman
- RTI Health Solutions, Raleigh, North Carolina, USA.,Department of Epidemiology, Boston University, Boston, Massachusetts, USA
| | - Alan R Ellis
- Department of Social Work, NC State University, Raleigh, North Carolina, USA
| | - Mugdha Gokhale
- Department of Epidemiology, UNC Chapel Hill, Chapel Hill, North Carolina, USA.,Pharmacoepidemiology, Center for Observational & Real-World Evidence, Merck, West Point, Pennsylvania, USA
| | - Mark Lunt
- The Arthritis Research UK Epidemiology Unit, University of Manchester, Manchester, UK
| | - Cynthia Girman
- Department of Epidemiology, UNC Chapel Hill, Chapel Hill, North Carolina, USA.,CERobs Consulting, LLC, Chapel Hill, North Carolina, USA
| | - Robert J Glynn
- Pharmacoepidemiology and Pharmacoeconomics, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, USA
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19
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Sharma D, Willy C, Bischoff J. Optimal subset selection for causal inference using machine learning ensembles and particle swarm optimization. COMPLEX INTELL SYST 2020. [DOI: 10.1007/s40747-020-00169-w] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
AbstractWe suggest and evaluate a method for optimal construction of synthetic treatment and control samples for the purpose of drawing causal inference. The balance optimization subset selection problem, which formulates minimization of aggregate imbalance in covariate distributions to reduce bias in data, is a new area of study in operations research. We investigate a novel metric, cross-validated area under the receiver operating characteristic curve (AUC) as a measure of balance between treatment and control groups. The proposed approach provides direct and automatic balancing of covariate distributions. In addition, the AUC-based approach is able to detect subtler distributional differences than existing measures, such as simple empirical mean/variance and count-based metrics. Thus, optimizing AUCs achieves a greater balance than the existing methods. Using 5 widely used real data sets and 7 synthetic data sets, we show that optimization of samples using existing methods (Chi-square, mean variance differences, Kolmogorov–Smirnov, and Mahalanobis) results in samples containing imbalance that is detectable using machine learning ensembles. We minimize covariate imbalance by minimizing the absolute value of the distance of the maximum cross-validated AUC on $$ M $$
M
folds from 0.50, using evolutionary optimization. We demonstrate that particle swarm optimization (PSO) outperforms modified cuckoo swarm (MCS) for a gradient-free, non-linear noisy cost function. To compute AUCs, we use supervised binary classification approaches from the machine learning and credit scoring literature. Using superscore ensembles adds to the classifier-based two-sample testing literature. If the mean cross-validated AUC based on machine learning is 0.50, the two groups are indistinguishable and suitable for causal inference.
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20
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Chatton A, Le Borgne F, Leyrat C, Gillaizeau F, Rousseau C, Barbin L, Laplaud D, Léger M, Giraudeau B, Foucher Y. G-computation, propensity score-based methods, and targeted maximum likelihood estimator for causal inference with different covariates sets: a comparative simulation study. Sci Rep 2020; 10:9219. [PMID: 32514028 PMCID: PMC7280276 DOI: 10.1038/s41598-020-65917-x] [Citation(s) in RCA: 48] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2019] [Accepted: 04/26/2020] [Indexed: 12/25/2022] Open
Abstract
Controlling for confounding bias is crucial in causal inference. Distinct methods are currently employed to mitigate the effects of confounding bias. Each requires the introduction of a set of covariates, which remains difficult to choose, especially regarding the different methods. We conduct a simulation study to compare the relative performance results obtained by using four different sets of covariates (those causing the outcome, those causing the treatment allocation, those causing both the outcome and the treatment allocation, and all the covariates) and four methods: g-computation, inverse probability of treatment weighting, full matching and targeted maximum likelihood estimator. Our simulations are in the context of a binary treatment, a binary outcome and baseline confounders. The simulations suggest that considering all the covariates causing the outcome led to the lowest bias and variance, particularly for g-computation. The consideration of all the covariates did not decrease the bias but significantly reduced the power. We apply these methods to two real-world examples that have clinical relevance, thereby illustrating the real-world importance of using these methods. We propose an R package RISCA to encourage the use of g-computation in causal inference.
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Affiliation(s)
- Arthur Chatton
- INSERM UMR 1246 - SPHERE, Université de Nantes, Université de Tours, Nantes, France
- A2COM-IDBC, Pacé, France
| | - Florent Le Borgne
- INSERM UMR 1246 - SPHERE, Université de Nantes, Université de Tours, Nantes, France
- A2COM-IDBC, Pacé, France
| | - Clémence Leyrat
- INSERM UMR 1246 - SPHERE, Université de Nantes, Université de Tours, Nantes, France
- Department of Medical Statistics & Cancer Survival Group, London School of Hygiene and Tropical Medicine, London, UK
| | - Florence Gillaizeau
- INSERM UMR 1246 - SPHERE, Université de Nantes, Université de Tours, Nantes, France
- Centre Hospitalier Universitaire de Nantes, Nantes, France
| | - Chloé Rousseau
- INSERM UMR 1246 - SPHERE, Université de Nantes, Université de Tours, Nantes, France
- Centre Hospitalier Universitaire de Nantes, Nantes, France
- INSERM CIC1414, CHU Rennes, Rennes, France
| | | | - David Laplaud
- Centre Hospitalier Universitaire de Nantes, Nantes, France
- Centre de Recherche en Transplantation et Immunologie INSERM UMR1064, Université de Nantes, Nantes, France
| | - Maxime Léger
- INSERM UMR 1246 - SPHERE, Université de Nantes, Université de Tours, Nantes, France
- Département d'Anesthésie-Réanimation, Centre Hospitalier Universitaire d'Angers, Angers, France
| | - Bruno Giraudeau
- INSERM UMR 1246 - SPHERE, Université de Nantes, Université de Tours, Nantes, France
- INSERM CIC1415, CHRU de Tours, Tours, France
| | - Yohann Foucher
- INSERM UMR 1246 - SPHERE, Université de Nantes, Université de Tours, Nantes, France.
- Centre Hospitalier Universitaire de Nantes, Nantes, France.
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21
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Jivraj NK, Scales DC, Gomes T, Bethell J, Hill A, Pinto R, Wijeysundera DN, Wunsch H. Evaluation of opioid discontinuation after non-orthopaedic surgery among chronic opioid users: a population-based cohort study. Br J Anaesth 2020; 124:281-291. [PMID: 32000975 DOI: 10.1016/j.bja.2019.12.006] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2019] [Revised: 11/29/2019] [Accepted: 12/09/2019] [Indexed: 01/30/2023] Open
Abstract
BACKGROUND Many patients use opioids chronically before surgery; it is unclear if surgery alters the likelihood of ongoing opioid consumption in these patients. METHODS We performed a population-based matched cohort study of adults in Ontario, Canada undergoing one of 16 non-orthopaedic surgical procedures and who were chronically using opioids, defined as (1) an opioid prescription that overlapped the index date and (2) either a total of 120 or more cumulative calendar days of filled opioid prescriptions, or 10 or more prescriptions filled in the prior year. Each surgical patient was matched based on age, sex, Charlson comorbidity index, and daily preoperative opioid dose to three non-surgical patients who were also chronic opioid users. The primary outcome was time to opioid discontinuation. RESULTS The cohort included 4755 surgical and 14 265 matched non-surgical patients. After adjustment for sociodemographic characteristics and comorbidities, surgery was associated with an increased likelihood of opioid discontinuation (adjusted hazard ratio: 1.34, 95% confidence interval [CI]: 1.27, 1.42). Among surgical patients, factors associated with a reduced odds of discontinuation included a mean preoperative opioid dose above 90 morphine milligram equivalents (adjusted odds ratio [aOR]: 0.39; 95% CI: 0.32, 0.49) or filling a prescription for oxycodone (aOR: 0.73; 95% CI: 0.56, 0.98). Receipt of an in-patient Acute Pain Service consultation (aOR: 1.34; 95% CI: 1.06, 1.69) or residing in the highest neighbourhood income quintile (aOR: 1.35; 95% CI: 1.04, 1.79) were associated with a greater odds of opioid discontinuation. CONCLUSIONS For chronic opioid users, surgery was associated with an increased likelihood of discontinuation of opioids in the following year compared with non-surgical chronic opioid users.
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Affiliation(s)
- Naheed K Jivraj
- Department of Anaesthesiology and Pain Medicine, University of Toronto, Toronto, ON, Canada; Institute of Health Policy Management and Evaluation, Toronto, ON, Canada; ICES, Toronto, ON, Canada.
| | - Damon C Scales
- Institute of Health Policy Management and Evaluation, Toronto, ON, Canada; Interdepartmental Division of Critical Care Medicine, University of Toronto, Toronto, ON, Canada; Department of Critical Care Medicine, Sunnybrook Health Sciences Centre, Toronto, ON, Canada; Li Ka Shing Knowledge Institute, St. Michael's Hospital, Toronto, ON, Canada; Sunnybrook Research Institute, Toronto, ON, Canada; ICES, Toronto, ON, Canada
| | - Tara Gomes
- Institute of Health Policy Management and Evaluation, Toronto, ON, Canada; Li Ka Shing Knowledge Institute, St. Michael's Hospital, Toronto, ON, Canada; ICES, Toronto, ON, Canada
| | | | - Andrea Hill
- Department of Critical Care Medicine, Sunnybrook Health Sciences Centre, Toronto, ON, Canada; Sunnybrook Research Institute, Toronto, ON, Canada
| | - Ruxandra Pinto
- Department of Critical Care Medicine, Sunnybrook Health Sciences Centre, Toronto, ON, Canada
| | - Duminda N Wijeysundera
- Institute of Health Policy Management and Evaluation, Toronto, ON, Canada; Department of Anaesthesia and Li Ka Shing Knowledge Institute, St. Michael's Hospital, Toronto, ON, Canada; ICES, Toronto, ON, Canada
| | - Hannah Wunsch
- Interdepartmental Division of Critical Care Medicine, University of Toronto, Toronto, ON, Canada; Department of Critical Care Medicine, Sunnybrook Health Sciences Centre, Toronto, ON, Canada; Sunnybrook Research Institute, Toronto, ON, Canada; ICES, Toronto, ON, Canada
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22
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Nearest Neighbour Propensity Score Matching and Bootstrapping for Estimating Binary Patient Response in Oncology: A Monte Carlo Simulation. Sci Rep 2020; 10:964. [PMID: 31969627 PMCID: PMC6976708 DOI: 10.1038/s41598-020-57799-w] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2019] [Accepted: 12/09/2019] [Indexed: 01/08/2023] Open
Abstract
Nearest Neighbour (NN) propensity score (PS) matching methods are commonly used in pharmacoepidemiology to estimate treatment response using observational data. Unfortunately, there is limited evidence on the optimal approach for accurately estimating binary treatment response and, more so, to estimate its variance. Bootstrapping, although commonly used to accurately estimate variance, is rarely used together with PS matching. In this Monte Carlo simulation-based study, we examined the performance of bootstrapping used in conjunction with PS matching, as opposed to different NN matching techniques, on a simulated dataset exhibiting varying levels of real world complexity. Thus, an experimental design was set up that independently varied the proportion of patients treated, the proportion of outcomes censored and the amount of PS matches used. Simulation results were externally validated on a real observational dataset obtained from the Belgian Cancer Registry. We found all investigated PS methods to be stable and concordant, with k-NN matching to be optimally dealing with the censoring problem, typically present in chronic cancer-related datasets, whilst being the least computationally expensive. In contrast, bootstrapping used in conjunction with PS matching, being the most computationally expensive, only showed superior results in small patient populations with long-term largely unobserved treatment effects.
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23
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Resection of recurrent glioblastoma multiforme in elderly patients: a pseudo-randomized analysis revealed clinical benefit. J Neurooncol 2020; 146:381-387. [PMID: 31933259 DOI: 10.1007/s11060-020-03393-z] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2019] [Accepted: 01/07/2020] [Indexed: 01/22/2023]
Abstract
INTRODUCTION Elderly patients constitute an expanding part of our society. Due to a continuously increasing life expectancy, an optimal quality of life is expected even into advanced age. Glioblastoma (GBM) is more common in older patients, but they are still often withheld from efficient treatment due to worry of worse tolerance and have a significantly worse prognosis compared to younger patients. Our retrospective observational study aimed to investigate the therapeutic benefit from a second resection in recurrent glioblastoma of elderly patients. MATERIALS AND METHODS We included a cohort of 39 elderly patients (> 65 years) with a second resection as treatment option in the case of a tumor recurrence. A causal inference model was built by multiple non- and semiparametric models, which was used to identify matched patients from our elderly GBM database which comprises 538 patients. The matched cohorts were analyzed by a Cox-regression model adjusted by time-dependent covariates. RESULTS The Cox-regression analysis showed a significant survival benefit (Hazard Ratio: 0.6, 95% CI 0.36-0.9, p-value = 0.0427) for the re-resected group (18.0 months, 95% CI 13.97-23.2 months) compared to the group without re-resection (10.1 months, 95% CI 8.09-20.9 months). No differences in the co-morbidities or hemato-oncological side effects during chemotherapy could be detected. Anesthetic- and surgical complications were rare and comparable to the complication rate of patients undergoing the first-line resection. CONCLUSION Taken together, in elderly patients, re-resection is an acceptable treatment option in the recurrent state of a glioblastoma. The individual evaluation of the patients' medical status as well as the chances of withstanding general anesthesia needs to be done in close interdisciplinary consultation. If these requirements are met, elderly patients benefit from a re-resection.
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24
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Rudolph KE, Shev A, Paksarian D, Merikangas KR, Mennitt DJ, James P, Casey JA. Environmental noise and sleep and mental health outcomes in a nationally representative sample of urban US adolescents. Environ Epidemiol 2019; 3:e056. [PMID: 31538137 PMCID: PMC6693982 DOI: 10.1097/ee9.0000000000000056] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2019] [Accepted: 05/28/2019] [Indexed: 11/23/2022] Open
Abstract
BACKGROUND Environmental noise has been linked to negative health outcomes, like poor sleep, poor mental health, and cardiovascular disease, and likely accounts for more than 1 million disability-adjusted life years annually in Western Europe. Adolescence may be a particularly sensitive period for noise exposure due to an increased need for sleep, failure to meet sleep guidelines, and increased risk for first onset of some mental health disorders. However, the potential health effects of living in high-noise environments have not been studied in US adolescents, rarely in European adolescents, and mental health outcomes studied have not corresponded to diagnoses from the Diagnostic and Statistical Manual of Mental Disorders (DSM). METHODS Using a US-based nationally representative survey of urban adolescents (N = 4,508), we estimated associations of day-night average sound levels exceeding the US Environmental Protection Agency's 55 decibel limit with sleep outcomes and lifetime mental health DSM diagnoses. We implemented doubly robust targeted minimum loss-based estimation coupled with propensity score matching to account for numerous potential adolescent, household, and environmental confounders. RESULTS Living in a high- versus low-noise Census block group was associated with later bedtimes on weeknights (0.48 hours, 95% confidence interval [CI] = -0.15, 1.12) and weekend nights (0.65 hours, 95% CI = 0.37, 0.93), but not with total hours slept. Associations between living in a high- versus low-noise Census block group and mental disorders were mixed, with wide CIs, and not robust to sensitivity analyses. CONCLUSIONS We find evidence for an association between residence in a high-noise area and later bedtimes among urban adolescents but no consistent evidence of such an association with mental health disorders.
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Affiliation(s)
- Kara E. Rudolph
- Department of Emergency Medicine, School of Medicine, University of California, Davis, Sacramento, California
| | - Aaron Shev
- Department of Emergency Medicine, School of Medicine, University of California, Davis, Sacramento, California
| | - Diana Paksarian
- Genetic Epidemiology Research Branch, National Institute of Mental Health, Bethesda, Maryland
| | - Kathleen R. Merikangas
- Genetic Epidemiology Research Branch, National Institute of Mental Health, Bethesda, Maryland
| | - Daniel J. Mennitt
- Department of Electrical and Computer Engineering, Colorado State University, Fort Collins, Colorado
| | - Peter James
- Department of Population Medicine, Harvard Medical School and Harvard Pilgrim Health Care Institute, Boston, Massachusetts
| | - Joan A. Casey
- Division of Environmental Health Sciences, School of Public Health, University of California, Berkeley, California
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25
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Vable AM, Kiang MV, Glymour MM, Rigdon J, Drabo EF, Basu S. Performance of Matching Methods as Compared With Unmatched Ordinary Least Squares Regression Under Constant Effects. Am J Epidemiol 2019; 188:1345-1354. [PMID: 30995301 DOI: 10.1093/aje/kwz093] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2018] [Revised: 03/27/2019] [Accepted: 03/29/2019] [Indexed: 11/14/2022] Open
Abstract
Matching methods are assumed to reduce the likelihood of a biased inference compared with ordinary least squares (OLS) regression. Using simulations, we compared inferences from propensity score matching, coarsened exact matching, and unmatched covariate-adjusted OLS regression to identify which methods, in which scenarios, produced unbiased inferences at the expected type I error rate of 5%. We simulated multiple data sets and systematically varied common support, discontinuities in the exposure and/or outcome, exposure prevalence, and analytical model misspecification. Matching inferences were often biased in comparison with OLS, particularly when common support was poor; when analysis models were correctly specified and common support was poor, the type I error rate was 1.6% for propensity score matching (statistically inefficient), 18.2% for coarsened exact matching (high), and 4.8% for OLS (expected). Our results suggest that when estimates from matching and OLS are similar (i.e., confidence intervals overlap), OLS inferences are unbiased more often than matching inferences; however, when estimates from matching and OLS are dissimilar (i.e., confidence intervals do not overlap), matching inferences are unbiased more often than OLS inferences. This empirical "rule of thumb" may help applied researchers identify situations in which OLS inferences may be unbiased as compared with matching inferences.
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Affiliation(s)
- Anusha M Vable
- Center for Population Health Sciences, Stanford University, Palo Alto, California
- Center for Primary Care and Outcomes Research, Department of Medicine, School of Medicine, Stanford University, Palo Alto, California
| | - Mathew V Kiang
- Department of Social and Behavioral Sciences, T.H. Chan School of Public Health, Harvard University, Boston, Massachusetts
| | - M Maria Glymour
- Department of Social and Behavioral Sciences, T.H. Chan School of Public Health, Harvard University, Boston, Massachusetts
- Department of Epidemiology and Biostatistics, University of California, San Francisco, San Francisco, California
| | - Joseph Rigdon
- Quantitative Sciences Unit, Department of Medicine, School of Medicine, Stanford University, Palo Alto, California
| | - Emmanuel F Drabo
- Center for Population Health Sciences, Stanford University, Palo Alto, California
- Center for Primary Care and Outcomes Research, Department of Medicine, School of Medicine, Stanford University, Palo Alto, California
| | - Sanjay Basu
- Center for Population Health Sciences, Stanford University, Palo Alto, California
- Center for Primary Care and Outcomes Research, Department of Medicine, School of Medicine, Stanford University, Palo Alto, California
- Department of Health Research and Policy, School of Medicine, Stanford University, Palo Alto, California
- Center for Primary Care, Harvard Medical School, Boston, Massachusetts
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26
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Rodríguez-Molina D, Barth S, Herrera R, Rossmann C, Radon K, Karnowski V. An educational intervention to improve knowledge about prevention against occupational asthma and allergies using targeted maximum likelihood estimation. Int Arch Occup Environ Health 2019; 92:629-638. [PMID: 30643958 DOI: 10.1007/s00420-018-1397-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2018] [Accepted: 12/13/2018] [Indexed: 12/29/2022]
Abstract
PURPOSE Occupational asthma and allergies are potentially preventable diseases affecting 5-15% of the working population. However, the use of preventive measures is often insufficient. The aim of this study was to estimate the average treatment effect of an educational intervention designed to improve the knowledge of preventive measures against asthma and allergies in farm apprentices from Bavaria (Southern Germany). METHODS Farm apprentices at Bavarian farm schools were asked to complete a questionnaire evaluating their knowledge about preventive measures against occupational asthma and allergies (use of personal protective equipment, personal and workplace hygiene measures). Eligible apprentices were randomized by school site to either a control or an intervention group. The intervention consisted of a short educational video about use of preventive measures. Six months after the intervention, subjects were asked to complete a post-intervention questionnaire. Of the 116 apprentices (70 intervention group, 46 control group) who answered the baseline questionnaire, only 47 subjects (41%; 17 intervention group, 30 control group) also completed the follow-up questionnaire. We, therefore, estimated the causal effect of the intervention using targeted maximum likelihood estimation. Models were controlled for potential confounders. RESULTS Based on the targeted maximum likelihood estimation, the intervention would have increased the proportion of correct answers on all six preventive measures by 18.4% (95% confidence interval 7.3-29.6%) had all participants received the intervention vs. had they all been in the control group. CONCLUSIONS These findings indicate the improvement of knowledge by the educational intervention.
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Affiliation(s)
- Daloha Rodríguez-Molina
- Occupational and Environmental Epidemiology and NetTeaching Unit, Institute and Outpatient Clinic for Occupational, Social and Environmental Medicine, University Hospital of Munich (LMU), Ziemssenstr. 1, 80336, Munich, Germany.
- Department of Medical Informatics, Biometry and Epidemiology (IBE), Ludwig-Maximilians University Munich (LMU), Marchioninistr. 15, 81377, Munich, Germany.
| | - Swaantje Barth
- Occupational and Environmental Epidemiology and NetTeaching Unit, Institute and Outpatient Clinic for Occupational, Social and Environmental Medicine, University Hospital of Munich (LMU), Ziemssenstr. 1, 80336, Munich, Germany
| | - Ronald Herrera
- Occupational and Environmental Epidemiology and NetTeaching Unit, Institute and Outpatient Clinic for Occupational, Social and Environmental Medicine, University Hospital of Munich (LMU), Ziemssenstr. 1, 80336, Munich, Germany
| | - Constanze Rossmann
- Department of Media and Communication Sciences, University of Erfurt, Nordhäuser Str. 63, 99089, Erfurt, Germany
| | - Katja Radon
- Occupational and Environmental Epidemiology and NetTeaching Unit, Institute and Outpatient Clinic for Occupational, Social and Environmental Medicine, University Hospital of Munich (LMU), Ziemssenstr. 1, 80336, Munich, Germany
| | - Veronika Karnowski
- Department of Communication Studies and Media Research (IfKW), Ludwig-Maximilians University Munich (LMU), Oettingenstr. 67, 80538, Munich, Germany
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Han L, Goulet JL, Skanderson M, Bathulapalli H, Luther SL, Kerns RD, Brandt CA. Evaluation of Complementary and Integrative Health Approaches Among US Veterans with Musculoskeletal Pain Using Propensity Score Methods. PAIN MEDICINE (MALDEN, MASS.) 2019; 20:90-102. [PMID: 29584926 PMCID: PMC6329442 DOI: 10.1093/pm/pny027] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Objectives To examine the treatment effectiveness of complementary and integrative health approaches (CIH) on chronic pain using Propensity Score (PS) methods. Design, Settings, and Participants A retrospective cohort of 309,277 veterans with chronic musculoskeletal pain assessed over three years after initial diagnosis. Methods CIH exposure was defined as one or more clinical visits for massage, acupuncture, or chiropractic care. The treatment effect of CIH on self-rated pain intensity was examined using a longitudinal model. PS-matching and inverse probability of treatment weighting (IPTW) were used to account for potential selection and confounding biases. Results At baseline, veterans with (7,621) and without (301,656) CIH exposure differed significantly in 21 out of 35 covariates. During the follow-up period, on average CIH recipients had 0.83 (95% confidence interval [CI] = 0.77 to 0.89) points higher pain intensity ratings (range = 0-10) than nonrecipients. This apparent unfavorable effect size was reduced to 0.37 (95% CI = 0.28 to 0.45) after PS matching, 0.36 (95% CI = 0.29 to 0.44) with IPTW on the treated (IPTW-T) weighting, and diminished to null when integrating IPTW-T with PS matching (0.004, 95% CI = -0.09 to 0.10). An alternative IPTW model and conventional covariate adjustment appeared least powerful in terms of potential bias reduction. Sensitivity analyses restricting the follow-up period to one year after CIH initiation derived consistent results. Conclusions PS-based causal methods successfully eliminated baseline difference between exposure groups in all measured covariates, yet they did not detect a significant difference in the self-rated pain intensity outcome between veterans who received CIHs and those who did not during the follow-up period.
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Affiliation(s)
- Ling Han
- Departments of *Internal Medicine
- Pain Research, Informatics, Multimorbidities and Education (PRIME) Center, VA Connecticut Healthcare System, West Haven, Connecticut
| | - Joseph L Goulet
- Psychiatry
- Medicine
- Emergency Medicine, Yale School of Medicine, New Haven, Connecticut
- Pain Research, Informatics, Multimorbidities and Education (PRIME) Center, VA Connecticut Healthcare System, West Haven, Connecticut
| | - Melissa Skanderson
- Pain Research, Informatics, Multimorbidities and Education (PRIME) Center, VA Connecticut Healthcare System, West Haven, Connecticut
| | - Harini Bathulapalli
- Pain Research, Informatics, Multimorbidities and Education (PRIME) Center, VA Connecticut Healthcare System, West Haven, Connecticut
| | | | - Robert D Kerns
- Psychiatry
- Medicine
- Emergency Medicine, Yale School of Medicine, New Haven, Connecticut
- Pain Research, Informatics, Multimorbidities and Education (PRIME) Center, VA Connecticut Healthcare System, West Haven, Connecticut
| | - Cynthia A Brandt
- Psychiatry
- Medicine
- Emergency Medicine, Yale School of Medicine, New Haven, Connecticut
- Pain Research, Informatics, Multimorbidities and Education (PRIME) Center, VA Connecticut Healthcare System, West Haven, Connecticut
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The Authors Respond. Epidemiology 2018; 29:695-696. [DOI: 10.1097/ede.0000000000000881] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Rasouli B, Ahlqvist E, Alfredsson L, Andersson T, Carlsson PO, Groop L, Löfvenborg J, Martinell M, Rosengren A, Tuomi T, Wolk A, Carlsson S. Coffee consumption, genetic susceptibility and risk of latent autoimmune diabetes in adults: A population-based case-control study. DIABETES & METABOLISM 2018; 44:354-360. [DOI: 10.1016/j.diabet.2018.05.002] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2018] [Revised: 04/23/2018] [Accepted: 05/06/2018] [Indexed: 01/25/2023]
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Schuler A, Callahan A, Jung K, Shah NH. Performing an Informatics Consult: Methods and Challenges. J Am Coll Radiol 2018; 15:563-568. [PMID: 29396125 PMCID: PMC5901653 DOI: 10.1016/j.jacr.2017.12.023] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2017] [Accepted: 12/15/2017] [Indexed: 12/24/2022]
Abstract
Our health care system is plagued by missed opportunities, waste, and harm. Data generated in the course of care are often underutilized, scientific insight goes untranslated, and evidence is overlooked. To address these problems, we envisioned a system where aggregate patient data can be used at the bedside to provide practice-based evidence. To create that system, we directly connect practicing physicians to clinical researchers and data scientists through an informatics consult. Our team processes and classifies questions posed by clinicians, identifies the appropriate patient data to use, runs the appropriate analyses, and returns an answer, ideally in a 48-hour time window. Here, we discuss the methods that are used for data extraction, processing, and analysis in our consult. We continue to refine our informatics consult service, moving closer to a learning health care system.
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Affiliation(s)
- Alejandro Schuler
- Center for Biomedical Informatics Research, Stanford University, Stanford, California.
| | - Alison Callahan
- Center for Biomedical Informatics Research, Stanford University, Stanford, California
| | - Kenneth Jung
- Center for Biomedical Informatics Research, Stanford University, Stanford, California
| | - Nigam H Shah
- Center for Biomedical Informatics Research, Stanford University, Stanford, California
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Ahern J, Colson KE, Margerson-Zilko C, Hubbard A, Galea S. Predicting the Population Health Impacts of Community Interventions: The Case of Alcohol Outlets and Binge Drinking. Am J Public Health 2016; 106:1938-1943. [PMID: 27631757 DOI: 10.2105/ajph.2016.303425] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
A substitution estimator can be used to predict how shifts in population exposures might change health. We illustrated this method by estimating how an upper limit on alcohol outlet density might alter binge drinking in the New York Social Environment Study (n = 4000), and provided statistical code and sample data. The largest differences in binge drinking were for an upper limit of 70 outlets per square mile; there was a -0.7% difference in binge drinking prevalence for New York City overall (95% confidence interval [CI] = -0.2%, -1.3%) and a -2.4% difference in binge drinking prevalence for the subset of communities the intervention modified (95% CI = -0.5%, -4.0%). A substitution estimator is a flexible tool for estimating population intervention parameters and improving the translation of public health research results to practitioners.
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Affiliation(s)
- Jennifer Ahern
- Jennifer Ahern and K. Ellicott Colson are with the Division of Epidemiology, School of Public Health, University of California, Berkeley. Claire Margerison-Zilko is with the Department of Epidemiology and Biostatistics, College of Human Medicine, Michigan State University, East Lansing. Alan Hubbard is with the Division of Biostatistics, School of Public Health, University of California, Berkeley. Sandro Galea is with the School of Public Health, Boston University, Boston, MA
| | - K Ellicott Colson
- Jennifer Ahern and K. Ellicott Colson are with the Division of Epidemiology, School of Public Health, University of California, Berkeley. Claire Margerison-Zilko is with the Department of Epidemiology and Biostatistics, College of Human Medicine, Michigan State University, East Lansing. Alan Hubbard is with the Division of Biostatistics, School of Public Health, University of California, Berkeley. Sandro Galea is with the School of Public Health, Boston University, Boston, MA
| | - Claire Margerson-Zilko
- Jennifer Ahern and K. Ellicott Colson are with the Division of Epidemiology, School of Public Health, University of California, Berkeley. Claire Margerison-Zilko is with the Department of Epidemiology and Biostatistics, College of Human Medicine, Michigan State University, East Lansing. Alan Hubbard is with the Division of Biostatistics, School of Public Health, University of California, Berkeley. Sandro Galea is with the School of Public Health, Boston University, Boston, MA
| | - Alan Hubbard
- Jennifer Ahern and K. Ellicott Colson are with the Division of Epidemiology, School of Public Health, University of California, Berkeley. Claire Margerison-Zilko is with the Department of Epidemiology and Biostatistics, College of Human Medicine, Michigan State University, East Lansing. Alan Hubbard is with the Division of Biostatistics, School of Public Health, University of California, Berkeley. Sandro Galea is with the School of Public Health, Boston University, Boston, MA
| | - Sandro Galea
- Jennifer Ahern and K. Ellicott Colson are with the Division of Epidemiology, School of Public Health, University of California, Berkeley. Claire Margerison-Zilko is with the Department of Epidemiology and Biostatistics, College of Human Medicine, Michigan State University, East Lansing. Alan Hubbard is with the Division of Biostatistics, School of Public Health, University of California, Berkeley. Sandro Galea is with the School of Public Health, Boston University, Boston, MA
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