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For: Gálvez JH, Tai HH, Lagüe M, Zebarth BJ, Strömvik MV. The nitrogen responsive transcriptome in potato (Solanum tuberosum L.) reveals significant gene regulatory motifs. Sci Rep 2016;6:26090. [PMID: 27193058 DOI: 10.1038/srep26090] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2015] [Accepted: 04/25/2016] [Indexed: 12/18/2022]  Open
Number Cited by Other Article(s)
1
Zinta R, Tiwari JK, Buckseth T, Goutam U, Singh RK, Thakur AK, Kumar V, Singh S, Kumar M. Agro-physiological and transcriptome profiling reveal key genes associated with potato tuberization under different nitrogen regimes in aeroponics. PLoS One 2025;20:e0320313. [PMID: 40153446 PMCID: PMC11952238 DOI: 10.1371/journal.pone.0320313] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2024] [Accepted: 02/17/2025] [Indexed: 03/30/2025]  Open
2
Ding K, Shan Y, Wang L, Zhang Y, Tian G. Transcriptomics combined with physiological analysis and metabolomics revealed the response of potato tuber formation to nitrogen. BMC PLANT BIOLOGY 2024;24:1109. [PMID: 39573986 PMCID: PMC11583798 DOI: 10.1186/s12870-024-05758-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2024] [Accepted: 10/29/2024] [Indexed: 11/24/2024]
3
Wei Q, Yin Y, Tong Q, Gong Z, Shi Y. Multi-omics analysis of excessive nitrogen fertilizer application: Assessing environmental damage and solutions in potato farming. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2024;284:116916. [PMID: 39181078 DOI: 10.1016/j.ecoenv.2024.116916] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2024] [Revised: 08/15/2024] [Accepted: 08/20/2024] [Indexed: 08/27/2024]
4
Zhao H, Ge M, Zhang F, Du D, Zhao Z, Shen C, Hao Q, Xiao M, Shi X, Wang J, Fan M. Integrated morphological, physiological and transcriptomic analyses reveal the responses of Toona sinensis seedlings to low-nitrogen stress. Genomics 2024;116:110899. [PMID: 39047875 DOI: 10.1016/j.ygeno.2024.110899] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2023] [Revised: 07/03/2024] [Accepted: 07/20/2024] [Indexed: 07/27/2024]
5
Transcriptome Analysis of Two Tetraploid Potato Varieties under Water-Stress Conditions. Int J Mol Sci 2022;23:ijms232213905. [PMID: 36430379 PMCID: PMC9694765 DOI: 10.3390/ijms232213905] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Revised: 11/08/2022] [Accepted: 11/10/2022] [Indexed: 11/16/2022]  Open
6
Jian H, Sun H, Liu R, Zhang W, Shang L, Wang J, Khassanov V, Lyu D. Construction of drought stress regulation networks in potato based on SMRT and RNA sequencing data. BMC PLANT BIOLOGY 2022;22:381. [PMID: 35909124 PMCID: PMC9341072 DOI: 10.1186/s12870-022-03758-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/16/2022] [Accepted: 07/08/2022] [Indexed: 06/15/2023]
7
Guo H, Pu X, Jia H, Zhou Y, Ye G, Yang Y, Na T, Wang J. Transcriptome analysis reveals multiple effects of nitrogen accumulation and metabolism in the roots, shoots, and leaves of potato (Solanum tuberosum L.). BMC PLANT BIOLOGY 2022;22:282. [PMID: 35676629 PMCID: PMC9178895 DOI: 10.1186/s12870-022-03652-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Accepted: 05/16/2022] [Indexed: 06/15/2023]
8
Arce RC, Carrillo N, Pierella Karlusich JJ. The chloroplast redox-responsive transcriptome of solanaceous plants reveals significant nuclear gene regulatory motifs associated to stress acclimation. PLANT MOLECULAR BIOLOGY 2022;108:513-530. [PMID: 35044587 DOI: 10.1007/s11103-022-01240-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2021] [Accepted: 01/06/2022] [Indexed: 06/14/2023]
9
Zhang F, He W, Yuan Q, Wei K, Ruan L, Wang L, Cheng H. Transcriptome analysis identifies CsNRT genes involved in nitrogen uptake in tea plants, with a major role of CsNRT2.4. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2021;167:970-979. [PMID: 34571390 DOI: 10.1016/j.plaphy.2021.09.024] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2021] [Revised: 09/16/2021] [Accepted: 09/18/2021] [Indexed: 06/13/2023]
10
Liang T, Yuan Z, Fu L, Zhu M, Luo X, Xu W, Yuan H, Zhu R, Hu Z, Wu X. Integrative Transcriptomic and Proteomic Analysis Reveals an Alternative Molecular Network of Glutamine Synthetase 2 Corresponding to Nitrogen Deficiency in Rice (Oryza sativa L.). Int J Mol Sci 2021;22:ijms22147674. [PMID: 34299294 PMCID: PMC8304609 DOI: 10.3390/ijms22147674] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2021] [Revised: 07/10/2021] [Accepted: 07/15/2021] [Indexed: 01/21/2023]  Open
11
Zhang J, Wang Y, Zhao Y, Zhang Y, Zhang J, Ma H, Han Y. Transcriptome analysis reveals Nitrogen deficiency induced alterations in leaf and root of three cultivars of potato (Solanum tuberosum L.). PLoS One 2020;15:e0240662. [PMID: 33119630 PMCID: PMC7595393 DOI: 10.1371/journal.pone.0240662] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2020] [Accepted: 09/30/2020] [Indexed: 11/18/2022]  Open
12
Macharia TN, Bellieny-Rabelo D, Moleleki LN. Transcriptome Profiling of Potato (Solanum tuberosum L.) Responses to Root-Knot Nematode (Meloidogyne javanica) Infestation during A Compatible Interaction. Microorganisms 2020;8:microorganisms8091443. [PMID: 32967109 PMCID: PMC7563278 DOI: 10.3390/microorganisms8091443] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2020] [Revised: 09/04/2020] [Accepted: 09/10/2020] [Indexed: 12/31/2022]  Open
13
Tiwari JK, Buckseth T, Devi S, Varshney S, Sahu S, Patil VU, Zinta R, Ali N, Moudgil V, Singh RK, Rawat S, Dua VK, Kumar D, Kumar M, Chakrabarti SK, Rao AR, Rai A. Physiological and genome-wide RNA-sequencing analyses identify candidate genes in a nitrogen-use efficient potato cv. Kufri Gaurav. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2020;154:171-183. [PMID: 32563041 DOI: 10.1016/j.plaphy.2020.05.041] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2020] [Revised: 05/30/2020] [Accepted: 05/30/2020] [Indexed: 06/11/2023]
14
Kyriakidou M, Achakkagari SR, Gálvez López JH, Zhu X, Tang CY, Tai HH, Anglin NL, Ellis D, Strömvik MV. Structural genome analysis in cultivated potato taxa. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2020;133:951-966. [PMID: 31893289 PMCID: PMC7021743 DOI: 10.1007/s00122-019-03519-6] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2019] [Accepted: 12/18/2019] [Indexed: 05/13/2023]
15
Zhang F, Wang L, Bai P, Wei K, Zhang Y, Ruan L, Wu L, Cheng H. Identification of Regulatory Networks and Hub Genes Controlling Nitrogen Uptake in Tea Plants [Camellia sinensis (L.) O. Kuntze]. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2020;68:2445-2456. [PMID: 31899627 DOI: 10.1021/acs.jafc.9b06427] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
16
Tiwari JK, Buckseth T, Zinta R, Saraswati A, Singh RK, Rawat S, Dua VK, Chakrabarti SK. Transcriptome analysis of potato shoots, roots and stolons under nitrogen stress. Sci Rep 2020;10:1152. [PMID: 31980689 PMCID: PMC6981199 DOI: 10.1038/s41598-020-58167-4] [Citation(s) in RCA: 44] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2019] [Accepted: 01/13/2020] [Indexed: 12/19/2022]  Open
17
Chen MX, Sun C, Zhang KL, Song YC, Tian Y, Chen X, Liu YG, Ye NH, Zhang J, Qu S, Zhu FY. SWATH-MS-facilitated proteomic profiling of fruit skin between Fuji apple and a red skin bud sport mutant. BMC PLANT BIOLOGY 2019;19:445. [PMID: 31651235 PMCID: PMC6813987 DOI: 10.1186/s12870-019-2018-1] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2019] [Accepted: 09/05/2019] [Indexed: 05/23/2023]
18
Map-Based Functional Analysis of the GhNLP Genes Reveals Their Roles in Enhancing Tolerance to N-Deficiency in Cotton. Int J Mol Sci 2019;20:ijms20194953. [PMID: 31597268 PMCID: PMC6801916 DOI: 10.3390/ijms20194953] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2019] [Revised: 09/23/2019] [Accepted: 10/01/2019] [Indexed: 01/02/2023]  Open
19
Dobránszki J, Hidvégi N, Gulyás A, Teixeira da Silva JA. mRNA transcription profile of potato (Solanum tuberosum L.) exposed to ultrasound during different stages of in vitro plantlet development. PLANT MOLECULAR BIOLOGY 2019;100:511-525. [PMID: 31037600 PMCID: PMC6586710 DOI: 10.1007/s11103-019-00876-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/28/2018] [Accepted: 04/19/2019] [Indexed: 06/02/2023]
20
Tengkun N, Dongdong W, Xiaohui M, Yue C, Qin C. Analysis of Key Genes Involved in Potato Anthocyanin Biosynthesis Based on Genomics and Transcriptomics Data. FRONTIERS IN PLANT SCIENCE 2019;10:603. [PMID: 31156673 PMCID: PMC6527903 DOI: 10.3389/fpls.2019.00603] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2018] [Accepted: 04/24/2019] [Indexed: 05/18/2023]
21
Moon KB, Ahn DJ, Park JS, Jung WY, Cho HS, Kim HR, Jeon JH, Park YI, Kim HS. Transcriptome Profiling and Characterization of Drought-Tolerant Potato Plant (Solanum tuberosum L.). Mol Cells 2018;41:979-992. [PMID: 30396236 PMCID: PMC6277564 DOI: 10.14348/molcells.2018.0312] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2018] [Revised: 09/13/2018] [Accepted: 09/18/2018] [Indexed: 01/25/2023]  Open
22
Jozefowicz AM, Hartmann A, Matros A, Schum A, Mock HP. Nitrogen Deficiency Induced Alterations in the Root Proteome of a Pair of Potato (Solanum tuberosum L.) Varieties Contrasting for their Response to Low N. Proteomics 2018;17. [PMID: 29087609 DOI: 10.1002/pmic.201700231] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2017] [Revised: 10/13/2017] [Indexed: 12/20/2022]
23
Neilson J, Lagüe M, Thomson S, Aurousseau F, Murphy AM, Bizimungu B, Deveaux V, Bègue Y, Jacobs JME, Tai HH. Gene expression profiles predictive of cold-induced sweetening in potato. Funct Integr Genomics 2017;17:459-476. [PMID: 28236275 DOI: 10.1007/s10142-017-0549-9] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2016] [Revised: 01/18/2017] [Accepted: 01/30/2017] [Indexed: 10/24/2022]
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