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For: Forestan C, Aiese Cigliano R, Farinati S, Lunardon A, Sanseverino W, Varotto S. Stress-induced and epigenetic-mediated maize transcriptome regulation study by means of transcriptome reannotation and differential expression analysis. Sci Rep 2016;6:30446. [PMID: 27461139 PMCID: PMC4962059 DOI: 10.1038/srep30446] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2016] [Accepted: 06/27/2016] [Indexed: 12/25/2022]  Open
Number Cited by Other Article(s)
1
Yang X, Chen Z, Lu J, Wei X, Yao Y, Lv W, Han J, Fei J. Identification and Characterization of the LecRLKs Gene Family in Maize, and Its Role Under Biotic and Abiotic Stress. BIOLOGY 2024;14:20. [PMID: 39857251 PMCID: PMC11763279 DOI: 10.3390/biology14010020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2024] [Revised: 12/19/2024] [Accepted: 12/26/2024] [Indexed: 01/27/2025]
2
Qu J, Yu D, Gu W, Khalid MHB, Kuang H, Dang D, Wang H, Prasanna B, Zhang X, Zhang A, Zheng H, Guan Y. Genetic architecture of kernel-related traits in sweet and waxy maize revealed by genome-wide association analysis. Front Genet 2024;15:1431043. [PMID: 39399216 PMCID: PMC11466784 DOI: 10.3389/fgene.2024.1431043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2024] [Accepted: 09/17/2024] [Indexed: 10/15/2024]  Open
3
Han J, Wang Q, Qian B, Liu Q, Wang Z, Liu Y, Chen Z, Wu W, Zhang C, Yin Y. Exploring the Roles of the Swi2/Snf2 Gene Family in Maize Abiotic Stress Responses. Int J Mol Sci 2024;25:9686. [PMID: 39273633 PMCID: PMC11396418 DOI: 10.3390/ijms25179686] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2024] [Revised: 09/04/2024] [Accepted: 09/04/2024] [Indexed: 09/15/2024]  Open
4
Cazares-Álvarez JE, Báez-Astorga PA, Arroyo-Becerra A, Maldonado-Mendoza IE. Genome-Wide Identification of a Maize Chitinase Gene Family and the Induction of Its Expression by Fusarium verticillioides (Sacc.) Nirenberg (1976) Infection. Genes (Basel) 2024;15:1087. [PMID: 39202446 PMCID: PMC11353892 DOI: 10.3390/genes15081087] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2024] [Revised: 08/09/2024] [Accepted: 08/13/2024] [Indexed: 09/03/2024]  Open
5
Magar ND, Shah P, Barbadikar KM, Bosamia TC, Madhav MS, Mangrauthia SK, Pandey MK, Sharma S, Shanker AK, Neeraja CN, Sundaram RM. Long non-coding RNA-mediated epigenetic response for abiotic stress tolerance in plants. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024;206:108165. [PMID: 38064899 DOI: 10.1016/j.plaphy.2023.108165] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/25/2022] [Revised: 10/30/2023] [Accepted: 11/02/2023] [Indexed: 02/15/2024]
6
Sen S, Woodhouse MR, Portwood JL, Andorf CM. Maize Feature Store: A centralized resource to manage and analyze curated maize multi-omics features for machine learning applications. Database (Oxford) 2023;2023:baad078. [PMID: 37935586 PMCID: PMC10634621 DOI: 10.1093/database/baad078] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2022] [Revised: 09/16/2023] [Accepted: 10/19/2023] [Indexed: 11/09/2023]
7
Huang P, Tate M, Berg‐Falloure KM, Christensen SA, Zhang J, Schirawski J, Meeley R, Kolomiets MV. A non-JA producing oxophytodienoate reductase functions in salicylic acid-mediated antagonism with jasmonic acid during pathogen attack. MOLECULAR PLANT PATHOLOGY 2023;24:725-741. [PMID: 36715587 PMCID: PMC10257049 DOI: 10.1111/mpp.13299] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2022] [Revised: 01/09/2023] [Accepted: 01/10/2023] [Indexed: 06/11/2023]
8
Kumar M, Rani K. Epigenomics in stress tolerance of plants under the climate change. Mol Biol Rep 2023:10.1007/s11033-023-08539-6. [PMID: 37294468 DOI: 10.1007/s11033-023-08539-6] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Accepted: 05/19/2023] [Indexed: 06/10/2023]
9
Chen S, Dang D, Liu Y, Ji S, Zheng H, Zhao C, Dong X, Li C, Guan Y, Zhang A, Ruan Y. Genome-wide association study presents insights into the genetic architecture of drought tolerance in maize seedlings under field water-deficit conditions. FRONTIERS IN PLANT SCIENCE 2023;14:1165582. [PMID: 37223800 PMCID: PMC10200999 DOI: 10.3389/fpls.2023.1165582] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/14/2023] [Accepted: 03/24/2023] [Indexed: 05/25/2023]
10
Advances of Apetala2/Ethylene Response Factors in Regulating Development and Stress Response in Maize. Int J Mol Sci 2023;24:ijms24065416. [PMID: 36982510 PMCID: PMC10049130 DOI: 10.3390/ijms24065416] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2023] [Revised: 02/28/2023] [Accepted: 03/10/2023] [Indexed: 03/18/2023]  Open
11
Eskier D, Arıbaş A, Karakülah G. PlanTEnrichment: A How-to Guide on Rapid Identification of Transposable Elements Associated with Regions of Interest in Select Plant Genomes. Methods Mol Biol 2023;2703:59-70. [PMID: 37646937 DOI: 10.1007/978-1-0716-3389-2_5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
12
Choudhary P, Muthamilarasan M. Modulating physiological and transcriptional regulatory mechanisms for enhanced climate resilience in cereal crops. JOURNAL OF PLANT PHYSIOLOGY 2022;278:153815. [PMID: 36150236 DOI: 10.1016/j.jplph.2022.153815] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Revised: 09/09/2022] [Accepted: 09/10/2022] [Indexed: 06/16/2023]
13
Li J, Chen M, Fan T, Mu X, Gao J, Wang Y, Jing T, Shi C, Niu H, Zhen S, Fu J, Zheng J, Wang G, Tang J, Gou M. Underlying mechanism of accelerated cell death and multiple disease resistance in a maize lethal leaf spot 1 allele. JOURNAL OF EXPERIMENTAL BOTANY 2022;73:3991-4007. [PMID: 35303096 DOI: 10.1093/jxb/erac116] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Accepted: 03/16/2022] [Indexed: 06/14/2023]
14
Ye X, Wang S, Zhao X, Gao N, Wang Y, Yang Y, Wu E, Jiang C, Cheng Y, Wu W, Liu S. Role of lncRNAs in cis- and trans-regulatory responses to salt in Populus trichocarpa. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022;110:978-993. [PMID: 35218100 DOI: 10.1111/tpj.15714] [Citation(s) in RCA: 36] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2019] [Revised: 02/19/2022] [Accepted: 02/22/2022] [Indexed: 06/05/2023]
15
Osuman AS, Badu-Apraku B, Karikari B, Ifie BE, Tongoona P, Danquah EY. Genome-Wide Association Study Reveals Genetic Architecture and Candidate Genes for Yield and Related Traits under Terminal Drought, Combined Heat and Drought in Tropical Maize Germplasm. Genes (Basel) 2022;13:genes13020349. [PMID: 35205393 PMCID: PMC8871853 DOI: 10.3390/genes13020349] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2022] [Revised: 02/03/2022] [Accepted: 02/07/2022] [Indexed: 11/19/2022]  Open
16
Woodhouse MR, Sen S, Schott D, Portwood JL, Freeling M, Walley JW, Andorf CM, Schnable JC. qTeller: a tool for comparative multi-genomic gene expression analysis. Bioinformatics 2021;38:236-242. [PMID: 34406385 DOI: 10.1093/bioinformatics/btab604] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2021] [Revised: 07/23/2021] [Accepted: 08/17/2021] [Indexed: 02/03/2023]  Open
17
Negi P, Mishra S, Ganapathi TR, Srivastava AK. Regulatory short RNAs: A decade's tale for manipulating salt tolerance in plants. PHYSIOLOGIA PLANTARUM 2021;173:1535-1555. [PMID: 34227692 DOI: 10.1111/ppl.13492] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2021] [Revised: 05/25/2021] [Accepted: 06/29/2021] [Indexed: 06/13/2023]
18
Singh D, Chaudhary P, Taunk J, Kumar Singh C, Sharma S, Singh VJ, Singh D, Chinnusamy V, Yadav R, Pal M. Plant epigenomics for extenuation of abiotic stresses: challenges and future perspectives. JOURNAL OF EXPERIMENTAL BOTANY 2021;72:6836-6855. [PMID: 34302734 DOI: 10.1093/jxb/erab337] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2021] [Accepted: 07/23/2021] [Indexed: 06/13/2023]
19
Madzima TF, Vendramin S, Lynn JS, Lemert P, Lu KC, McGinnis KM. Direct and Indirect Transcriptional Effects of Abiotic Stress in Zea mays Plants Defective in RNA-Directed DNA Methylation. FRONTIERS IN PLANT SCIENCE 2021;12:694289. [PMID: 34489998 PMCID: PMC8418275 DOI: 10.3389/fpls.2021.694289] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/12/2021] [Accepted: 07/14/2021] [Indexed: 06/13/2023]
20
Exploration of Epigenetics for Improvement of Drought and Other Stress Resistance in Crops: A Review. PLANTS 2021;10:plants10061226. [PMID: 34208642 PMCID: PMC8235456 DOI: 10.3390/plants10061226] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/12/2021] [Revised: 06/09/2021] [Accepted: 06/11/2021] [Indexed: 01/01/2023]
21
RNA-directed DNA methylation prevents rapid and heritable reversal of transposon silencing under heat stress in Zea mays. PLoS Genet 2021;17:e1009326. [PMID: 34125827 PMCID: PMC8224964 DOI: 10.1371/journal.pgen.1009326] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2020] [Revised: 06/24/2021] [Accepted: 05/28/2021] [Indexed: 12/12/2022]  Open
22
Heidari P, Faraji S, Ahmadizadeh M, Ahmar S, Mora-Poblete F. New Insights Into Structure and Function of TIFY Genes in Zea mays and Solanum lycopersicum: A Genome-Wide Comprehensive Analysis. Front Genet 2021;12:657970. [PMID: 34054921 PMCID: PMC8155530 DOI: 10.3389/fgene.2021.657970] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2021] [Accepted: 03/22/2021] [Indexed: 12/19/2022]  Open
23
Chano V, Domínguez-Flores T, Hidalgo-Galvez MD, Rodríguez-Calcerrada J, Pérez-Ramos IM. Epigenetic responses of hare barley (Hordeum murinum subsp. leporinum) to climate change: an experimental, trait-based approach. Heredity (Edinb) 2021;126:748-762. [PMID: 33608652 PMCID: PMC8102545 DOI: 10.1038/s41437-021-00415-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2020] [Revised: 01/29/2021] [Accepted: 01/29/2021] [Indexed: 02/08/2023]  Open
24
Chialva C, Blein T, Crespi M, Lijavetzky D. Insights into long non-coding RNA regulation of anthocyanin carrot root pigmentation. Sci Rep 2021;11:4093. [PMID: 33603038 PMCID: PMC7892999 DOI: 10.1038/s41598-021-83514-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2020] [Accepted: 02/04/2021] [Indexed: 01/31/2023]  Open
25
Yu C, Yan M, Dong H, Luo J, Ke Y, Guo A, Chen Y, Zhang J, Huang X. Maize bHLH55 functions positively in salt tolerance through modulation of AsA biosynthesis by directly regulating GDP-mannose pathway genes. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2021;302:110676. [PMID: 33288001 DOI: 10.1016/j.plantsci.2020.110676] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2020] [Revised: 08/31/2020] [Accepted: 09/03/2020] [Indexed: 05/21/2023]
26
Locus-specific paramutation in Zea mays is maintained by a PICKLE-like chromodomain helicase DNA-binding 3 protein controlling development and male gametophyte function. PLoS Genet 2020;16:e1009243. [PMID: 33320854 PMCID: PMC7837471 DOI: 10.1371/journal.pgen.1009243] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2020] [Revised: 01/26/2021] [Accepted: 11/02/2020] [Indexed: 12/22/2022]  Open
27
Xie S, Luo H, Huang Y, Wang Y, Ru W, Shi Y, Huang W, Wang H, Dong Z, Jin W. A Missense Mutation in a Large Subunit of Ribonucleotide Reductase Confers Temperature-Gated Tassel Formation. PLANT PHYSIOLOGY 2020;184:1979-1997. [PMID: 33020253 PMCID: PMC7723098 DOI: 10.1104/pp.20.00219] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2020] [Accepted: 09/15/2020] [Indexed: 05/15/2023]
28
Balti I, Benny J, Perrone A, Caruso T, Abdallah D, Salhi-Hannachi A, Martinelli F. Identification of conserved genes linked to responses to abiotic stresses in leaves among different plant species. FUNCTIONAL PLANT BIOLOGY : FPB 2020;48:54-71. [PMID: 32727652 DOI: 10.1071/fp20028] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2020] [Accepted: 07/08/2020] [Indexed: 06/11/2023]
29
A systems genetics approach reveals environment-dependent associations between SNPs, protein coexpression, and drought-related traits in maize. Genome Res 2020;30:1593-1604. [PMID: 33060172 PMCID: PMC7605251 DOI: 10.1101/gr.255224.119] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2019] [Accepted: 09/24/2020] [Indexed: 12/21/2022]
30
Varotto S, Tani E, Abraham E, Krugman T, Kapazoglou A, Melzer R, Radanović A, Miladinović D. Epigenetics: possible applications in climate-smart crop breeding. JOURNAL OF EXPERIMENTAL BOTANY 2020;71:5223-5236. [PMID: 32279074 PMCID: PMC7475248 DOI: 10.1093/jxb/eraa188] [Citation(s) in RCA: 58] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/31/2019] [Accepted: 04/09/2020] [Indexed: 05/23/2023]
31
Forestan C, Farinati S, Zambelli F, Pavesi G, Rossi V, Varotto S. Epigenetic signatures of stress adaptation and flowering regulation in response to extended drought and recovery in Zea mays. PLANT, CELL & ENVIRONMENT 2020;43:55-75. [PMID: 31677283 DOI: 10.1111/pce.13660] [Citation(s) in RCA: 44] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2019] [Revised: 09/03/2019] [Accepted: 09/23/2019] [Indexed: 05/22/2023]
32
Tirnaz S, Batley J. DNA Methylation: Toward Crop Disease Resistance Improvement. TRENDS IN PLANT SCIENCE 2019;24:1137-1150. [PMID: 31604599 DOI: 10.1016/j.tplants.2019.08.007] [Citation(s) in RCA: 47] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2019] [Revised: 08/13/2019] [Accepted: 08/22/2019] [Indexed: 05/23/2023]
33
Luo X, Liu J. Transcriptome Analysis of Acid-Responsive Genes and Pathways Involved in Polyamine Regulation in Iron Walnut. Genes (Basel) 2019;10:E605. [PMID: 31405132 PMCID: PMC6723594 DOI: 10.3390/genes10080605] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2019] [Revised: 08/07/2019] [Accepted: 08/07/2019] [Indexed: 02/07/2023]  Open
34
Jha UC, Bohra A, Jha R, Parida SK. Salinity stress response and 'omics' approaches for improving salinity stress tolerance in major grain legumes. PLANT CELL REPORTS 2019;38:255-277. [PMID: 30637478 DOI: 10.1007/s00299-019-02374-5] [Citation(s) in RCA: 44] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2018] [Accepted: 01/04/2019] [Indexed: 05/21/2023]
35
Spatio-Temporal Transcriptional Dynamics of Maize Long Non-Coding RNAs Responsive to Drought Stress. Genes (Basel) 2019;10:genes10020138. [PMID: 30781862 PMCID: PMC6410058 DOI: 10.3390/genes10020138] [Citation(s) in RCA: 46] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2018] [Revised: 01/23/2019] [Accepted: 02/04/2019] [Indexed: 02/08/2023]  Open
36
Luo D, Zhou Q, Wu Y, Chai X, Liu W, Wang Y, Yang Q, Wang Z, Liu Z. Full-length transcript sequencing and comparative transcriptomic analysis to evaluate the contribution of osmotic and ionic stress components towards salinity tolerance in the roots of cultivated alfalfa (Medicago sativa L.). BMC PLANT BIOLOGY 2019;19:32. [PMID: 30665358 PMCID: PMC6341612 DOI: 10.1186/s12870-019-1630-4] [Citation(s) in RCA: 62] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/25/2018] [Accepted: 01/04/2019] [Indexed: 05/21/2023]
37
Calixto CPG, Tzioutziou NA, James AB, Hornyik C, Guo W, Zhang R, Nimmo HG, Brown JWS. Cold-Dependent Expression and Alternative Splicing of Arabidopsis Long Non-coding RNAs. FRONTIERS IN PLANT SCIENCE 2019;10:235. [PMID: 30891054 PMCID: PMC6413719 DOI: 10.3389/fpls.2019.00235] [Citation(s) in RCA: 48] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2018] [Accepted: 02/12/2019] [Indexed: 05/07/2023]
38
Bai L, Chen Q, Jiang L, Lin Y, Ye Y, Liu P, Wang X, Tang H. Comparative transcriptome analysis uncovers the regulatory functions of long noncoding RNAs in fruit development and color changes of Fragaria pentaphylla. HORTICULTURE RESEARCH 2019;6:42. [PMID: 30854215 PMCID: PMC6397888 DOI: 10.1038/s41438-019-0128-4] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2017] [Revised: 01/19/2019] [Accepted: 01/22/2019] [Indexed: 05/18/2023]
39
Anderson SN, Zynda GJ, Song J, Han Z, Vaughn MW, Li Q, Springer NM. Subtle Perturbations of the Maize Methylome Reveal Genes and Transposons Silenced by Chromomethylase or RNA-Directed DNA Methylation Pathways. G3 (BETHESDA, MD.) 2018;8:1921-1932. [PMID: 29618467 PMCID: PMC5982821 DOI: 10.1534/g3.118.200284] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/26/2018] [Accepted: 04/03/2018] [Indexed: 01/17/2023]
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Nepolean T, Kaul J, Mukri G, Mittal S. Genomics-Enabled Next-Generation Breeding Approaches for Developing System-Specific Drought Tolerant Hybrids in Maize. FRONTIERS IN PLANT SCIENCE 2018;9:361. [PMID: 29696027 PMCID: PMC5905169 DOI: 10.3389/fpls.2018.00361] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2017] [Accepted: 03/05/2018] [Indexed: 05/28/2023]
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Lunardon A, Forestan C, Farinati S, Varotto S. De Novo Identification of sRNA Loci and Non-coding RNAs by High-Throughput Sequencing. Methods Mol Biol 2018;1675:297-314. [PMID: 29052198 DOI: 10.1007/978-1-4939-7318-7_17] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
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Kumar V, Khare T, Shriram V, Wani SH. Plant small RNAs: the essential epigenetic regulators of gene expression for salt-stress responses and tolerance. PLANT CELL REPORTS 2018;37:61-75. [PMID: 28951953 DOI: 10.1007/s00299-017-2210-4] [Citation(s) in RCA: 63] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2017] [Accepted: 09/12/2017] [Indexed: 05/07/2023]
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Horváth V, Merenciano M, González J. Revisiting the Relationship between Transposable Elements and the Eukaryotic Stress Response. Trends Genet 2017;33:832-841. [DOI: 10.1016/j.tig.2017.08.007] [Citation(s) in RCA: 116] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2017] [Revised: 08/02/2017] [Accepted: 08/31/2017] [Indexed: 10/18/2022]
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Forestan C, Farinati S, Aiese Cigliano R, Lunardon A, Sanseverino W, Varotto S. Maize RNA PolIV affects the expression of genes with nearby TE insertions and has a genome-wide repressive impact on transcription. BMC PLANT BIOLOGY 2017;17:161. [PMID: 29025411 PMCID: PMC5639751 DOI: 10.1186/s12870-017-1108-1] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2017] [Accepted: 10/04/2017] [Indexed: 05/09/2023]
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Effects of drought stress on global gene expression profile in leaf and root samples of Dongxiang wild rice (Oryza rufipogon). Biosci Rep 2017;37:BSR20160509. [PMID: 28424372 PMCID: PMC6434088 DOI: 10.1042/bsr20160509] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2016] [Revised: 04/05/2017] [Accepted: 04/19/2017] [Indexed: 11/17/2022]  Open
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