Biodiversity loss and turnover in alternative states in the Mediterranean Sea: a case study on meiofauna

Coralline barrens and benthic mega-invertebrates: An intimate connection

Despite considerable progress in understanding the transition from algal forests to coralline barrens, knowledge of coralline barren ecosystems in terms of community composition and functioning is still sparse and important gaps remain to be filled. Using a barren/forest patch system, we tested the hypothesis that the presence of coralline barren enhances the abundance and diversity of benthic mega-invertebrates. We also analysed trophic functional diversity through isotopic analyses of δ13C and δ15N. The distribution of benthic mega-invertebrates biomass differed markedly between coralline barren and algal forest, being more abundant and diverse in the barren state. Isotopic diversity metrics of the benthic mega-invertebrates assemblage indicated comparable trophic structure between the two states, although higher isotopic uniqueness in coralline barren was determined by sea urchins, especially A. lixula, and carnivorous starfish. We showed that in a patchy coralline barren/algal forest system, a more diversified benthic mega-invertebrates assemblage in the barren caused limited trophodynamic changes. This was possibly determined by the behaviour of some trophic groups such as filter feeders, deposit feeders and omnivores. Finally, our results evidence the close association between coralline barrens and benthic mega-invertebrates, contradicting the common view of coralline barrens as depauperate habitats with low diversity and productivity.

Epilithic Bacterial Assemblages on Subtidal Rocky Reefs: Variation Among Alternative Habitats at Ambient and Enhanced Nutrient Levels

Temperate rocky reefs often support mosaics of alternative habitats such as macroalgal forests, algal turfs and sea urchin barrens. Although the composition of epilithic microbial biofilms (EMBs) is recognized as a major determinant of macroalgal recruitment, their role in regulating the stability of alternative habitats on temperate rocky reefs remains unexplored. On shallow rocky reefs of the Island of Capraia (NW Mediterranean), we compared EMB structure among canopy stands formed by the fucoid Ericaria brachycarpa, algal turfs, and urchin barrens under ambient versus experimentally enhanced nutrient levels. The three habitats shared a core microbial community consisting of 21.6 and 25.3% of total ASVs under ambient and enhanced nutrient conditions, respectively. Although Gammaproteobacteria, Alphaproteobacteria and Flavobacteriia were the most abundant classes across habitats, multivariate analyses at the ASV level showed marked differences in EMB composition among habitats. Enhancing nutrient level had no significant effect on EMBs, although it increased their similarity between macroalgal canopy and turf habitats. At both ambient and enriched nutrient levels, ASVs mostly belonging to Proteobacteria and Bacteroidetes were more abundant in EMBs from macroalgal canopies than barrens. In contrast, ASVs belonging to the phylum of Proteobacteria and, in particular, to the families of Rhodobacteraceae and Flavobacteriaceae at ambient nutrient levels and of Rhodobacteraceae and Bacteriovoracaceae at enhanced nutrient levels were more abundant in turf than canopy habitats. Our results show that primary surfaces from alternative habitats that form mosaics on shallow rocky reefs in oligotrophic areas host distinct microbial communities that are, to some extent, resistant to moderate nutrient enhancement. Understanding the role of EMBs in generating reinforcing feedback under different nutrient loading regimes appears crucial to advance our understanding of the mechanisms underpinning the stability of habitats alternative to macroalgal forests as well as their role in regulating reverse shifts.

Bioassessment of environmental quality based on taxonomic and functional traits of marine nematodes in the Bohai Sea, China

Free-living marine nematodes are valuable biological indicators for different environmental disturbances. Their taxonomic composition and functional traits often respond to environmental changes. In this study, marine nematodes, collected from the Bohai sea on the northeastern coast of China in 2014, were investigated in terms of their taxonomic composition and functional traits. Furthermore, the environmental quality of the investigated area was assessed based on nematode metrics. The studied nematode community showed spatial variation in taxonomic and functional composition, in response to changes in environmental variables such as sediment chlorophyll-a, phaeophytin-a, organic matter content, silt-clay content etc. Overall, high percentage of tolerant marine nematodes species or colonizers predominated, suggesting a disturbed environmental condition of the study area. Further results from the environmental quality assessment based on nematode metrics indicated a moderate quality status at the most investigated stations.

Diversity of Molluscan Assemblage in Relation to Biotic and Abiotic Variables in Brown Algal Forests

Canopy-forming macroalgae, mainly those belonging to the order Fucales, form the so-called brown algal forests, which are among the most productive assemblages in shallow coastal zones. Their vertical, branching canopies increase nearshore primary production, provide nursery areas for juvenile fish, and sustain understory assemblages of smaller algae and both sessile and vagile fauna. The majority of benthic invertebrates inhabiting these forests have larval stages that spend some time floating freely or swimming in the plankton. Therefore, canopy-forming macroalgae play an important role as species collectors related to larval supply and hydrodynamic processes. During the past several decades, brown algal forests have significantly reduced their extension and coverage in the Mediterranean basin, due to multiple interacting natural and anthropogenic pressures, with negative consequences also for the related fauna. The aim of this research was to examine how differences in macrophyte abundance and structure, as well as environmental variables, affect the associated molluscan communities in the shallow northern Adriatic Sea. Sampling sites with well-developed vegetation cover dominated by different canopy-forming species were selected in the shallow infralittoral belt of the northern Adriatic Sea in the spring–summer period of the years 2019 and 2020. Our results confirm the importance of algal forests for molluscan assemblage, with a total of 68 taxa of molluscs found associated with macrophytes. Gastropods showed the highest richness and abundance, followed by bivalves. Mollusc richness and diversity (in terms of biotic indices) were not related with the degree of development of canopy-forming species (in terms of total cover and total volume), nor with the ecological status of benthic macroalgae at different depths. On the contrary, the variability in molluscan taxa abundances was explained by some environmental variables, such as temperature, pH, light, and nitrates concentration.

Foraging of the sea urchin Paracentrotus lividus (Lamarck, 1816) on invasive allochthonous and autochthonous algae

Attempts to control marine invasive alien species (IAS) with native predators gained contrasting results, so far. To explore the feasibility of this approach to control the invasive marine alga Caulerpa cylindracea, we investigated the foraging behaviour of the sea urchin Paracentrotus lividus on three native macroalgae (Ulva sp., Penicillus capitatus and Cystoseira compressa) and on C. cylindracea. The consumption rate of C. cylindracea fresh biomass resulted larger than that of the other algae, when offered separately or in combination. C. cylindracea, however, was not the most attractive food item. The larger consumption rates of C. cylindracea can be explained by its specific caloric content (as assessed by its biochemical composition) that is lower than that of the other algae. Our results confirm that P. lividus can feed on C. cylindracea, but do not fully support its use to control C. cylindracea, unless in conditions where this alga is largely dominant because of other factors.

Long Term Interactions of Native and Invasive Species in a Marine Protected Area Suggest Complex Cascading Effects Challenging Conservation Outcomes

Understanding the interactions among invasive species, native species and marine protected areas (MPAs), and the long-term regime shifts in MPAs is receiving increased attention, since biological invasions can alter the structure and functioning of the protected ecosystems and challenge conservation efforts. Here we found evidence of marked modifications in the rocky reef associated biota in a Mediterranean MPA from 2009 to 2019 through visual census surveys, due to the presence of invasive species altering the structure of the ecosystem and triggering complex cascading effects on the long term. Low levels of the populations of native high-level predators were accompanied by the population increase and high performance of both native and invasive fish herbivores. Subsequently the overgrazing and habitat degradation resulted in cascading effects towards the diminishing of the native and invasive invertebrate grazers and omnivorous benthic species. Our study represents a good showcase of how invasive species can coexist or exclude native biota and at the same time regulate or out-compete other established invaders and native species.

Impairment of microbial and meiofaunal ecosystem functions linked to algal forest loss

Habitat loss is jeopardizing marine biodiversity. In the Mediterranean Sea, the algal forests of Cystoseira spp. form one of the most complex, productive and vulnerable shallow-water habitats. These forests are rapidly regressing with negative impact on the associated biodiversity, and potential consequences in terms of ecosystem functioning. Here, by comparing healthy Cystoseira forests and barren grounds (i.e., habitats where the macroalgal forests disappeared), we assessed the effects of habitat loss on meiofaunal and nematode biodiversity, and on some ecosystem functions (here measured in terms of prokaryotic and meiofaunal biomass). Overall, our results suggest that the loss of Cystoseira forests and the consequent barren formation is associated with the loss of meiofaunal higher taxa and a decrease of nematode biodiversity, leading to the collapse of the microbial and meiofaunal variables of ecosystem functions. We conclude that, given the very limited resilience of these ecosystems, active restoration of these vulnerable habitats is needed, in order to recover their biodiversity, ecosystem functions and associated services.

Effects of widespread human disturbances in the marine environment suggest a new agenda for meiofauna research is needed

The response of an ecological community to a disturbance event, and its capacity to recover, are of major interest to ecologists, especially at a time of increasing frequencies and intensities of environmental change brought about by humans. Meiofauna, a group of small-sized organisms, are an abundant and ubiquitous component of seafloor communities that respond rapidly to environmental change. We summarise the available research on the response of metazoan meiofauna to the most widespread anthropogenic disturbances in the marine environment, including bottom fishing, the introduction of invasive species and anthropogenic climate change. We show that disturbance effects on habitats interact critically with effects on resident meiofauna species. Their responses are consistent with competitive replacement, where disparate disturbance effects on competing species drive shifts in dominance and intra- and interspecific interactions. The widespread replacement of habitat-specific ecological specialists by broadly-adapted ecological generalists and opportunists results in biotic and functional homogenisation of once disparate biotas. Anthropogenic disturbances may facilitate novel interactions among meiofauna species, and between meiofauna and other benthic organisms, but the number and breadth of these interactions is likely to be limited. Knowledge about the dependence of meiofauna species on their environment and on other benthic species has been growing. Future studies will be most meaningful if this knowledge is expanded alongside understanding the potential of locally adapted species to respond to shifts in environmental conditions.

Macroalgal forest vs sea urchin barren: Patterns of macro-zoobenthic diversity in a large-scale Mediterranean study

The study aimed at contributing to the knowledge of alternative stable states by evaluating the differences of mobile and sessile macro-zoobenthic assemblages between sea urchin barrens and macroalgal forests in coastal Mediterranean systems considering a large spatial scale. Six sites (100 s km apart) were selected: Croatia, Montenegro, Sicily (Italy), Sardinia (Italy), Tuscany (Italy), and Balearic Islands (Spain). A total of 531 taxa, 404 mobile and 127 sessile macro-invertebrates were recorded. Overall, 496 and 201 taxa were found in macroalgal forests and in barrens, respectively. The results of this large-scale descriptive study have met the expectation of lower macrofauna complexity and diversity in barrens rather than in macroalgal forests, and have allowed estimating the differences in levels of diversity and the consistency of variability across Mediterranean sites. Some peculiar patterns in barrens, related to both abundance of specific taxa and to high values of beta diversity, have been evidenced.

Sedimentary Organic Matter, Prokaryotes, and Meiofauna across a River-Lagoon-Sea Gradient

In benthic ecosystems, organic matter (OM), prokaryotes, and meiofauna represent a functional bottleneck in the energy transfer towards higher trophic levels and all respond to a variety of natural and anthropogenic disturbances. The relationships between OM and the different components of benthic communities are influenced by multiple environmental variables, which can vary across different habitats. However, analyses of these relationships have mostly been conducted by considering the different habitats separately, even though freshwater, transitional, and marine ecosystems, physically linked to each other, are not worlds apart. Here, we investigated the quantity and nutritional quality of sedimentary OM, along with the prokaryotic and meiofauna abundance, biomass, and biodiversity, in two sampling periods, corresponding to high vs. low freshwater inputs to the sea, along a river-to-sea transect. The highest values of sedimentary organic loads and their nutritional quality, prokaryotic and meiofaunal abundance, and biomass were consistently observed in lagoon systems. Differences in the prokaryotic Operational Taxonomic Units (OTUs) and meiofaunal taxonomic composition, rather than changes in the richness of taxa, were observed among the three habitats and, in each habitat, between sampling periods. Such differences were driven by either physical or trophic variables, though with differences between seasons. Overall, our results indicate that the apparent positive relationship between sedimentary OM, prokaryote and meiofaunal abundance, and biomass across the river-lagoon-sea transect under scrutiny is more the result of a pattern of specifically adapted prokaryotic and meiofaunal communities to different habitats, rather than an actually positive ‘response’ to OM enrichment. We conclude that the synoptic analysis of prokaryotes and meiofauna can provide useful information on the relative effect of organic enrichment and environmental settings across gradients of environmental continuums, including rivers, lagoons, and marine coastal ecosystems.

A high biodiversity mitigates the impact of ocean acidification on hard-bottom ecosystems

Biodiversity loss and climate change simultaneously threaten marine ecosystems, yet their interactions remain largely unknown. Ocean acidification severely affects a wide variety of marine organisms and recent studies have predicted major impacts at the pH conditions expected for 2100. However, despite the renowned interdependence between biodiversity and ecosystem functioning, the hypothesis that the species’ response to ocean acidification could differ based on the biodiversity of the natural multispecies assemblages in which they live remains untested. Here, using experimentally controlled conditions, we investigated the impact of acidification on key habitat-forming organisms (including corals, sponges and macroalgae) and associated microbes in hard-bottom assemblages characterised by different biodiversity levels. Our results indicate that, at higher biodiversity, the impact of acidification on otherwise highly vulnerable key organisms can be reduced by 50 to >90%, depending on the species. Here we show that such a positive effect of a higher biodiversity can be associated with higher availability of food resources and healthy microbe-host associations, overall increasing host resistance to acidification, while contrasting harmful outbreaks of opportunistic microbes. Given the climate change scenarios predicted for the future, we conclude that biodiversity conservation of hard-bottom ecosystems is fundamental also for mitigating the impacts of ocean acidification.

Multiple human pressures in coastal habitats: variation of meiofaunal assemblages associated with sewage discharge in a post-industrial area

Marine ecosystems are globally threatened by human activities, but some areas, such as those affected by abandoned industrial plants, show an overlap of acute and chronic impacts, which determine a considerable deterioration of their health status. Here we report the results of a research conducted on coastal sewers that discharge their loads in the highly contaminated area of Bagnoli-Coroglio (Tyrrhenian Sea, Western Mediterranean). The sampling area is characterized by heavy industrial activities (a steel plant using coal, iron and limestone) started in 1905 and ceased in 1990, which left widespread heavy metals and hydrocarbon contamination. After taking into account the potential influence of sediment grain size ranges through their inclusion as covariates in the analysis, we tested the potential impact of sewage discharge on the total abundance and multivariate structure of meiofaunal assemblages, as well as on the abundance of single taxa. The organic matter was analysed in terms of total phytopigment and biopolymeric carbon concentrations. Nematoda, Copepoda (including their nauplii), and Tardigrada were the most abundant meiofaunal taxa at all sites, but nematodes did not show a consistent pattern relative to the sewage outfalls. However, the sewer located in the historically most contaminated area showed a minimal abundance of all taxa, including nematodes, while copepods were relatively less abundant at the two southernmost sewers. Comparing the north vs. south site of the sewers, higher meiofaunal abundances were observed in the southward part, likely as a result of the local circulation. The results of this study indicate the general adaptation of meiofauna to multiple stressors (sewage discharge, superimposed to chronic industrial contamination) and its likely modulation by other local processes. They also provide relevant baseline information for future restoration interventions that would take into account the spatial variation of target organisms as needed.

Exploring the relationships between marine protected areas and invasive fish in the world's most invaded sea

Marine Protected Areas (MPAs) are an essential tool for marine biodiversity conservation. Yet, their effectiveness in protecting marine ecosystems from global stressors is debated. Biological invasions are a major driver of global change, causing biodiversity loss and altering ecosystem functioning. Here, we explored the relationships between MPAs and alien/native range-expanding fishes in the Mediterranean Sea, the world's most invaded sea. We surveyed fish and benthic communities in nine MPAs and adjacent unprotected areas across six countries. In the South and Eastern Mediterranean MPAs, the biomass of alien and native range-expanding fishes often exceeded 50% of the total fish biomass. Conversely, in the North and Western Mediterranean, alien fishes were absent. A negative relationship was found between native and alien species richness. Average and minimum sea surface temperature (SST) over six consecutive years were positively correlated with the total biomass of alien species; no alien fishes were recorded below 20.5°C average SST and 13.8°C minimum SST. We also found a negative relationship between alien fishes' biomass and the distance from the Suez Canal, which is the main pathway for the introduction of alien fish in the Mediterranean Sea. The biomass of alien and native range-expanding fishes was found to be higher in the South and Eastern Mediterranean MPAs than in adjacent unprotected areas. The association of barrens (rocky reefs deprived of vegetation) and invasive herbivores was observed at all eastern sites, regardless of protection status. Currently, the level of fishing pressure exerted on alien and native range-expanding fishes seems to be the most influential factor determining the lower biomass of invasive fishes at unprotected sites compared to MPAs. Our findings suggest that complementary management actions, such as species-targeted removals, should be taken in MPAs to effectively control invasive fish populations.

Biodiversity and distribution of the meiofaunal community in the reef slopes of the Maldivian archipelago (Indian Ocean)

Marine biologists have progressively increased their consciousness of the importance of meiofauna for the benthic domain in both temperate and tropical regions. After the 1998 bleaching, Maldivian reefs (Indian Ocean) have been regarded as a vulnerable ecosystem that must be carefully monitored. Accordingly, an extensive investigation of meiofaunal distribution in the reef slopes of the Maldivian archipelago has been carried out, taking into account geographical position, type of habitat (inner vs. outer slope), inclination and depth gradient. Twenty-four taxa revealed the highest meiofaunal richness ever found in Maldivian reefs. Interestingly, Thermosbenacea and Syncarida were identified, which are two taxa that have only recently been documented in the marine ecosystem. Chaetognatha were also present, which is a group that was only considered to be planktonic until 2000, when they were also discovered in the benthos. The type of habitat, affected by different hydrodynamic conditions, was the main factor influencing the meiofaunal community's structure and diversity. In detail, the outer reefs were characterized by the highest level of diversity, confirming previous observations on the rate of coral reef growth and vitality and underlining the greater vulnerability of the inner slopes. In contrast, depth only significantly affected the community structure, but not its density or diversity. Accordingly, community structure seems to be more sensitive than abundance and diversity indices when it comes to detecting depth gradients. The 10° inclination of the inner slopes revealed the most different community structure and the greatest dominance of nematodes, leading to the lowest diversity levels.

Co-occurring morphologically distinct algae support a diverse associated fauna in the intertidal zone of Araçá Bay, Brazil

Abstract Species diversity is regulated by historical, neutral and niche processes, with species tolerance, dispersal and productivity guiding diversity at larger scales, while habitat heterogeneity and biotic interactions acts in smaller scales. In rocky shores, several organisms provide secondary substrates for mobile fauna, with macroalgae being the most abundant and diverse ones. The patchiness promoted by different macroalgae hosts enhances small-scale heterogeneity and may increase and maintain the diversity of the mobile organisms, since there is a close relationship between the associated fauna and its hosts. In this study we selected three morphologically different macroalgae that coexist in the same rocky shore height in the Araçá Bay, an area under the threat of the nearby harbor expansion, and evaluated the fauna associated to each algal host. Even under similar abiotic pressure (same rocky shore height), the associated fauna of each algal host varied in number and composition, revealing a close relationship. The poorly branched foliose Ulva lactuca sustained a lower density of organisms and was dominated by isopods, while the heavily branched turf and Bostrychietum community showed a high density of organisms, with a dominance of peracarid crustaceans and annelids on the turf and more resistant groups, such as bivalves, acaris and terrestrial insects on the Bostrychietum. Previous studies in the Araçá Bay already revealed a large spatial heterogeneity in the processes and sessile organisms distribution, and here we highlight that this heterogeneity can be observed in an even smaller scale, with different algal hosts mediating the turnover of species in a scale of centimeters and meters, resulting in diversity maintenance of the associated fauna. Since the harbor expansion may prevent the occurrence of macroalgae as a result of light limitation by suspended platforms, we may expect not only a decrease in algal cover but also in the total diversity of the associated fauna in the Araçá Bay.

Current conditions and colonization history asymmetrically shape the organization of shallow sessile communities after simulated state shifts

Historical processes affecting biological organization are rarely considered when predicting the effects of disturbance on community structure. In order to assess the relative importance of historical and post-disturbance conditions as determinants of community structure, we undertook reciprocal transplants, at different successional stages, of sessile communities developing at recreational piers that were previously observed to show contrasting fish predation pressure and settlement rate in the São Sebastião Channel, Brazil. Regardless the direction of state shift, after 15 weeks communities converged to the destination site structure, substantially drifting away from the path observed at origin, therefore revealing high susceptibility to environmental change. Although converging, transplanted communities never matched the destination standard in both transplant directions, suggesting that history still mattered, as providing some legacy that lasted, at least, for 15 weeks. The taxonomic groups resisting community drift were hard-bodied invertebrates, which could eventually provide some resilience to these communities through ecosystem engineering.

Forgotten underwater forests: The key role of fucoids on Australian temperate reefs

Kelp forests dominated by species of Laminariales are globally recognized as key habitats on subtidal temperate rocky reefs. Forests characterized by fucalean seaweed, in contrast, receive relatively less attention despite being abundant, ubiquitous, and ecologically important. Here, we review information on subtidal fucalean taxa of Australia's Great Southern Reef, with a focus on the three most abundant and widely distributed genera (Phyllospora, Scytothalia, and Sargassum) to reveal the functionally unique role of fucoids in temperate reef ecology. Fucalean species span the entire temperate coastline of Australia (~71,000 km²) and play an important role in supporting subtidal temperate biodiversity and economic values on rocky reefs as well as in adjacent habitats. Climatic and anthropogenic stressors have precipitated significant range retractions and declines in many fucoids, with critical implications for associated assemblages. Such losses are persistent and unlikely to be reversed naturally due to the life history of these species and colonization of competitors and grazers following loss. Active restoration is proving successful in bringing back some fucoid species (Phyllospora comosa) lost from urban shores and will complement other passive and active forms of conservation. Fucalean forests play a unique role on subtidal temperate reefs globally, especially in Australia, but are comparatively understudied. Addressing this knowledge gap will be critical for understanding, predicting, and mitigating extant and future loss of these underwater forests and the valuable ecosystem services they support.

Regime shifts in coastal lagoons: Evidence from free-living marine nematodes

We test the validity of using the regime shift theory to account for differences in environmental state of coastal lagoons as a response to variation in connectivity with the sea, using free-living nematodes as a surrogate. The study is based on sediment samples from the inner and outer portions of 15 coastal lagoons (5 open to the sea, 5 intermittently open/closed, and 5 permanently closed lakes) along the southern coast of Brazil. Environmental data suggested that there are two contrasting environmental conditions, with coastal lakes being significantly different from open and intermittent lagoons. Marine nematode assemblages corroborate these two mutually exclusive alternative stable states (open vs. closed systems), but assemblages from the intermittently open/closed lagoons showed a gradual change in species composition between both systems independently of the environmental conditions. The gradient in the structural connectivity among lagoons and the sea, due to their regime shifts, changes the movement of resources and consumers and the internal physico-chemical gradients, directly affecting regional species diversity. Whereas openness to the sea increased similarity in nematode assemblage composition among connected lagoons, isolation increased dissimilarity among closed lagoons. Our results from a large-scale sampling program indicated that as lagoons lose connectivity with the sea, shifting the environmental state, local processes within individual intermittently open/closed lagoons and particularly within coastal lakes become increasingly more important in structuring these communities. The main implication of these findings is that depending on the local stable state we may end up with alternative regional patterns of biodiversity.