Rate coefficients for the reaction of OH with (E)-2-pentenal, (E)-2-hexenal, and (E)-2-heptenal

Conformational diversity and environmental implications of trans-2-pentenal

This study investigates the conformational intricacies of trans-2-pentenal (trans-2PA), a significant biogenic volatile organic compound. To unveil its potential implications in atmospheric chemistry and environmental pollution, we employ advanced infrared resonant vacuum ultraviolet mass-analysed threshold ionisation spectroscopy. Through this method, we identify the major conformers within trans-2PA, encompassing trans-s-trans (tt-) and trans-s-cis (tc-) structures with planar (cis) and non-planar (gauche) configurations introduced by a methyl group. In a pioneering spectroscopic examination, we analyze trans-2PA in both the neutral and cationic states. This approach allows us to gain a comprehensive understanding of its molecular behavior. Our conformer-specific vibrational spectra not only reveal the relative populations of the main conformers, notably tt-cis and tt-gauche conformers, but also shed light on atmospheric oxidation processes and lower tropospheric organic aerosol formation mechanisms. Our findings expand the understanding of the role of trans-2PA in environmental and biological contexts. Additionally, they contribute to a broader understanding of its influence on air quality, climate, and atmospheric dynamics. The collaboration between advanced experimental techniques and computational methods fortifies the scientific underpinning of this study, opening doors to further exploration in the realms of atmospheric chemistry and environmental science.

Kinetic and Products Study of the Atmospheric Degradation of trans-2-Hexenal with Cl Atoms

The gas-phase reaction between trans-2-hexenal (T2H) and chlorine atoms (Cl) was studied using three complementary experimental setups at atmospheric pressure and room temperature. In this work, we studied the rate constant for the titled oxidation reaction as well as the formation of the gas-phase products and secondary organic aerosols (SOAs). The rate constant of the T2H + Cl reaction was determined using the relative method in a simulation chamber using proton-transfer reaction time-of-flight mass spectrometry (PTR-ToF-MS) to monitor the loss of T2H and the reference compound. An average reaction rate constant of (3.17 ± 0.72) × 10^-10 cm³ molecule^-1 s^-1 was obtained. From this, the atmospheric lifetime of T2H due to Cl reaction was estimated to be 9 h for coastal regions. HCl, CO, and butanal were identified as primary products using Fourier transform infrared spectroscopy (FTIR). The molar yield of butanal was (6.4 ± 0.3)%. Formic acid was identified as a secondary product by FTIR. In addition, butanal, 2-chlorohexenal, and 2-hexenoic acid were identified as products by gas chromatography coupled to mass spectrometry but not quantified. A reaction mechanism is proposed based on the observed products. SOA formation was observed by using a fast mobility particle sizer spectrometer. The measured SOA yields reached maximum values of about 38% at high particle mass concentrations. This work exhibits for the first time that T2H can be a source of SOA in coastal atmospheres, where Cl concentrations can be high at dawn, or in industrial areas, such as ceramic industries, where Cl precursors may be present.

Theoretical study on the formation of Criegee intermediates from ozonolysis of pentenal: An example of trans-2-pentenal

In this study, we investigated the reaction mechanism and kinetics of ozone with trans-2-pentenal using density functional theory (DFT) and conventional transition state theory (CTST). At 298 K and 1 atm, the gas-phase reaction mechanisms and kinetic parameters were calculated at the level of CCSD(T)/6-311+G(d,p)//M06-2X/6-311+G(d,p). Both CC and CO bond cycloaddition as well as hydrogen abstraction were found. The calculations indicated that the main reaction path is 1,3-dipole cycloaddition reactions of ozone with CC bond with the relatively lower syn-energy-barrier of 3.35 kcal mol^-1 to form primary ozonide which decomposed to produce a carbonyl oxide called a Criegee intermediate (CI) and an aldehyde. The subsequent reactions of CIs were analysed in detail. It is found that the reaction pathways of the novelty CIs containing an aldehyde group are extremely similar with general CIs when they react with NO, NO₂, SO₂, H₂O, CH₂O and O₂. The condensed Fukui function were calculated to identify the active site of the chosen molecules. At 298 K and 1 atm, the reaction rate coefficient was 9.13 × 10^-18 cm³ molecule^-1 s^-1 with atmospheric lifetime of 1.3 days. The calculated rate constant is in general agreement with the available experimental data. The branching ratios indicated that syn-addition pathways are prior to anti-addition. The atmospheric ratios for CIs formation and the bimolecular reaction rate constants for the Criegee intermediates with the variety of partners were calculated. Our theoretical results are of importance in atmospheric chemistry of unsaturated aldehyde oxidation by ozone.

Primary emissions and secondary production of organic aerosols from heated animal fats

Cooking is an important source of primary organic aerosol (POA) in urban areas, and it may also generate abundant non-methane organic gases (NMOGs), which form oxidized organic aerosol (OOA) after atmospheric oxidation. Edible fats play an important role in a balanced diet and are part of various types of cooking. We conducted laboratory studies to examine the primary emissions of POA and NMOGs and OOA formation using an oxidation flow reactor (OFR) for three animal fats (i.e., lard, beef and chicken fats) heated at two different temperatures (160 and 180 °C). Positive matrix factorization (PMF) revealed that OOA formed together with POA loss after photochemical aging, suggesting the conversion of some POA to OOA. The maximum OOA production rates (PRs) from heated animal fats, occurring under OH exposures (OHexp) of 8.3-15 × 10¹⁰ molecules cm^-3 s, ranged from 8.9 to 24.7 μg min^-1, 1.6-14.5 times as high as initial POA emission rates (ERs). NMOG emissions from heated animal fats were dominated by aldehydes, which contributed 14-71% of the observed OOA. We estimated that cooking-related OOA could contribute to as high as ~10% of total organic aerosol (OA) in an urban area in Hong Kong, where cooking OA (COA) dominated the POA. This study provides insights into the potential contribution of cooking to urban OOA, which might be especially pronounced when cooking contributions dominate the primary emissions.

An experimental study of the gas-phase reaction between Cl atoms and trans-2-pentenal: Kinetics, products and SOA formation

The gas-phase reaction of trans-2-pentenal (T2P) with Cl atoms was studied at atmospheric pressure and room temperature. A rate coefficient of (2.56 ± 0.83) × 10^-10 cm³ molecule^-1 s^-1 was obtained using the relative rate method and isoprene, cyclohexane and ethanol as reference compounds. The kinetic study was carried out using a 300-L Teflon bag simulation chamber (IMT Lille Douai-France) and a 16-L Pyrex cell (UCLM-Ciudad Real-Spain), both coupled to the Fourier transform infrared (FTIR) technique. Gas-phase products and secondary organic aerosol (SOA) formation were studied at UCLM using a 16-L Pyrex cell and a 264-L quartz simulation chamber coupled to the FTIR and gas-chromatography-mass spectrometry (GC-MS) techniques. HCl, CO, and propanal were identified as products formed from the studied reaction and quantified by FTIR, the molar yield of the latter being (5.2 ± 0.2)%. Formic acid was identified as a secondary product and was quantified by FTIR with a yield of (6.2 ± 0.4)%. In addition, 2-chlorobutanal and 2-pentenoic acid were identified, but not quantified, by GC-MS as products. The SOA formation was investigated using a fast mobility particle sizer spectrometer. The observed SOA yields reached maximum values of around 7% at high particle mass concentrations. This work provides the first study of the formation of gaseous and particulate products for the reaction of Cl with T2P. A reaction mechanism is suggested to explain the formation of the observed gaseous products. The results are discussed in terms of structure-reactivity relationship, and the atmospheric implications derived from this study are commented as well.

Mono-Locus and Pyramided Resistant Grapevine Cultivars Reveal Early Putative Biomarkers Upon Artificial Inoculation With Plasmopara viticola

One of the most economically important grapevine diseases is Downy mildew (DM) caused by the oomycete Plasmopara viticola. A strategy to reduce the use of fungicides to compensate for the high susceptibility of V. vinifera is the selection of grapevine varieties showing pathogen-specific resistance. We applied a metabolomics approach to evaluate the metabolic modulation in mono-locus resistant genotypes carrying one locus associated with P. viticola resistance (Rpv) (BC4- Rpv1, Bianca- Rpv3-1, F12P160- Rpv12, Solaris- Rpv10), as well as in pyramided resistant genotypes carrying more than one Rpv (F12P60- Rpv3-1; Rpv12 and F12P127- Rpv3-1, Rpv3-3; Rpv10) taking as a reference the susceptible genotype Pinot Noir. In order to understand if different sources of resistance are associated with different degrees of resistance and, implicitly, with different responses to the pathogen, we considered the most important classes of plant metabolite primary compounds, lipids, phenols and volatile organic compounds at 0, 12, 48, and 96 h post-artificial inoculation (hpi). We identified 264 modulated compounds; among these, 22 metabolites were found accumulated in significant quantities in the resistant cultivars compared to Pinot Noir. In mono-locus genotypes, the highest modulation of the metabolites was noticed at 48 and 96 hpi, except for Solaris, that showed a behavior similar to the pyramided genotypes in which the changes started to occur as early as 12 hpi. Bianca, Solaris and F12P60 showed the highest number of interesting compounds accumulated after the artificial infection and with a putative effect against the pathogen. In contrast, Pinot Noir showed a less effective defense response in containing DM growth.

Atmospheric Chemistry of c-C5HF7 and c-C5F8: Temperature-Dependent OH Reaction Rate Coefficients, Degradation Products, Infrared Spectra, and Global Warming Potentials

c-C₅HF₇ (1H-heptafluorocyclopentene) and c-C₅F₈ (perfluorocyclopentene) are potent greenhouse gases presently used as replacement compounds in Si etching. A thorough understanding of their potential impact on climate and air quality necessitates studies of their atmospheric reactivity, radiative properties, and atmospheric degradation pathways. The predominant atmospheric removal process for these compounds is expected to be via reaction with the OH radical. In this study, rate coefficients, k, for the gas-phase reaction of the OH radical with c-C₅HF₇ and c-C₅F₈ were measured over a range of temperatures (242-370 K) and pressures (50-100 Torr, He) using a pulsed laser photolysis-laser-induced fluorescence technique. In addition, a complementary relative rate technique, employing multiple reference compounds, was used to study the reactions between 273 and 372 K at 100 Torr (He) total pressure. Reaction rate coefficients were found to be independent of pressure over this range of conditions with k₁(296 K) = (4.59 ± 0.10) × 10^-14 cm³ molecule^-1 s^-1 and k₁(T) = (4.00 ± 0.40) × 10^-13 exp(-(631 ± 30)/T) cm³ molecule^-1 s^-1 for c-C₅HF₇ and k₂(296 K) = (4.90 ± 0.14) × 10^-14 cm³ molecule^-1 s^-1 and k₂(T) = (3.59 ± 0.4) × 10^-13 exp(-(591 ± 25)/T) cm³ molecule^-1 s^-1 for c-C₅F₈. Stable end-products were measured following the OH radical-initiated degradation of c-C₅HF₇ and c-C₅F₈ in the presence of O₂. F(O)CCF₂CF₂CF₂CH(O), CF₂O, and CO₂ were observed as the major end-products in the oxidation of c-C₅HF₇ with molar yields of 0.64, 1.27, and 0.53, respectively. For c-C₅F₈, F(O)CCF₂CF₂CF₂CF(O), CF₂O, and CO₂ were observed with molar yields of 0.66, 0.63, and 0.43, respectively. The total carbon mass balance in both systems was 1.0 ± 0.15. The high yield of a C5-dicarbonyl end-product is consistent with a ring opening at the carbon-carbon double bond site for both c-C₅HF₇ and c-C₅F₈. A comparison of the present kinetic and degradation product results with previously published studies is presented. A rate coefficient upper limit for the gas-phase reaction of O₃ with c-C₅HF₇ and c-C₅F₈ of 1 × 10^-21 cm³ molecule^-1 s^-1 was measured as part of this work. Atmospheric lifetimes for c-C₅HF₇ and c-C₅F₈ are estimated to be 252 and 236 days, respectively. Infrared absorption spectra of c-C₅HF₇ and c-C₅F₈ were also measured and found to agree, to within 5%, with results from previous studies. The well-mixed and lifetime adjusted radiative efficiencies (RE, W m^-2 ppb^-1) and 100 year time horizon global warming potential (GWP) for c-C₅HF₇ are 0.35, 0.24, and 46.7 and for c-C₅F₈ are 0.38, 0.25, and 46.2, respectively.

Singlet oxygen generation by the reaction of acrolein with peroxynitrite via a 2-hydroxyvinyl radical intermediate

Acrolein (2-propenal) is an environmental pollutant, food contaminant, and endogenous toxic by-product formed in the thermal decomposition and peroxidation of lipids, proteins, and carbohydrates. Like other α,β-unsaturated aldehydes, acrolein undergoes Michael addition of nucleophiles such as basic amino acids residues of proteins and nucleobases, triggering aging associated disorders. Here, we show that acrolein is also a potential target of the potent biological oxidant, nitrosating and nitrating agent peroxynitrite. In vitro studies revealed the occurrence of 1,4-addition of peroxynitrite (k₂ = 6 × 10³ M^-1 s^-1, pH 7.2, 25 °C) to acrolein in air-equilibrated phosphate buffer. This is attested by acrolein concentration-dependent oxygen uptake, peroxynitrite consumption, and generation of formaldehyde and glyoxal as final products. These products are predicted to be originated from the Russell termination of ^•OOCH=CH(OH) radical which also includes molecular oxygen at the singlet delta state (O₂¹Δ_g). Accordingly, EPR spin trapping studies with the 2,6-nitrosobenzene-4-sulfonate ion (DBNBS) revealed a 6-line spectrum attributable to the 2-hydroxyvinyl radical adduct. Singlet oxygen was identified by its characteristic monomolecular IR emission at 1,270 nm in deuterated buffer, which was expectedly quenched upon addition of water and sodium azide. These data represent the first report on singlet oxygen creation from a vinylperoxyl radical, previously reported for alkyl- and formylperoxyl radicals, and may contribute to better understand the adverse acrolein behavior in vivo.

Rate Coefficient Measurements and Theoretical Analysis of the OH + ( E)-CF3CH═CHCF3 Reaction

Rate coefficients, k, for the gas-phase reaction of the OH radical with ( E)-CF₃CH═CHCF₃ (( E)-1,1,1,4,4,4-hexafluoro-2-butene, HFO-1336mzz(E)) were measured over a range of temperatures (211-374 K) and bath gas pressures (20-300 Torr; He, N₂) using a pulsed laser photolysis-laser-induced fluorescence (PLP-LIF) technique. k₁( T) was independent of pressure over this range of conditions with k₁(296 K) = (1.31 ± 0.15) × 10^-13 cm³ molecule^-1 s^-1 and k₁( T) = (6.94 ± 0.80) × 10^-13exp[-(496 ± 10)/ T] cm³ molecule^-1 s^-1, where the uncertainties are 2σ, and the pre-exponential term includes estimated systematic error. Rate coefficients for the OD reaction were also determined over a range of temperatures (262-374 K) at 100 Torr (He). The OD rate coefficients were ∼15% greater than the OH values and showed similar temperature dependent behavior with k₂( T) = (7.52 ± 0.44) × 10^-13exp[-(476 ± 20)/ T] and k₂(296 K) = (1.53 ± 0.15) × 10^-13 cm³ molecule^-1 s^-1. The rate coefficients for reaction 1 were also measured using a relative rate technique between 296 and 375 K with k₁(296 K) measured to be (1.22 ± 0.1) × 10^-13 cm³ molecule^-1 s^-1, in agreement with the PLP-LIF results. In addition, the 296 K rate coefficient for the O₃ + ( E)-CF₃CH═CHCF₃ reaction was determined to be <5.2 × 10^-22 cm³ molecule^-1 s^-1. A theoretical computational analysis is presented to interpret the observed positive temperature dependence for the addition reaction and the significant decrease in OH reactivity compared to the ( Z)-CF₃CH═CHCF₃ stereoisomer reaction. The estimated atmospheric lifetime of ( E)-CF₃CH═CHCF₃, due to loss by reaction with OH, is estimated to be ∼90 days, while the actual lifetime will depend on the location and season of its emission. Infrared absorption spectra of ( E)-CF₃CH═CHCF₃ were measured and used to estimate the 100 year time horizon global warming potentials (GWP) of 32 (atmospherically well-mixed) and 14 (lifetime-adjusted).

Mechanism and Product Distribution of the O3-Initiated Degradation of (E)-2-Heptenal, (E)-2-Octenal, and (E)-2-Nonenal

The O₃-molecule initiated degradation of three 2-alkenals (E)-2-heptenal, (E)-2-octenal, and (E)-2-nonenal has been investigated in a 1080 L quartz-glass environmental chamber at 298 ± 2 K and atmospheric pressure of synthetic air using in situ FTIR spectroscopy to monitor the reactants and products. The experiments were performed in the absence of an OH scavenger. The molar yields of the primary products formed were glyoxal (49 ± 4) % and pentanal (34 ± 3) % from the reaction of (E)-2-heptenal with O₃, glyoxal (41 ± 3) % and hexanal (39 ± 3) % from the reaction of (E)-2-octenal with O₃, and glyoxal (45 ± 3) % and heptanal (46 ± 3) % from the reaction of (E)-2-nonenal with O₃. The residual bands in the infrared product spectra for each of the studied reactions are attributed to 2-oxoaldehyde compounds. Based on the observed products, a general mechanism for the ozonolysis reaction of long chain unsaturated aldehydes is proposed, and the results are compared with the available literature data.

Kinetics and mechanisms of gas phase reactions of hexenols with ozone

The reactivity of hexenols, especially for the (E)-2-hexen-1-ol, with O₃ shows a strong dependence on their chemical structure.