1
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Basford AR, Bennett SK, Xiao M, Turcani L, Allen J, Jelfs KE, Greenaway RL. Streamlining the automated discovery of porous organic cages. Chem Sci 2024; 15:6331-6348. [PMID: 38699265 PMCID: PMC11062116 DOI: 10.1039/d3sc06133g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2023] [Accepted: 03/12/2024] [Indexed: 05/05/2024] Open
Abstract
Self-assembly through dynamic covalent chemistry (DCC) can yield a range of multi-component organic assemblies. The reversibility and dynamic nature of DCC has made prediction of reaction outcome particularly difficult and thus slows the discovery rate of new organic materials. In addition, traditional experimental processes are time-consuming and often rely on serendipity. Here, we present a streamlined hybrid workflow that combines automated high-throughput experimentation, automated data analysis, and computational modelling, to accelerate the discovery process of one particular subclass of molecular organic materials, porous organic cages. We demonstrate how the design and implementation of this workflow aids in the identification of organic cages with desirable properties. The curation of a precursor library of 55 tri- and di-topic aldehyde and amine precursors enabled the experimental screening of 366 imine condensation reactions experimentally, and 1464 hypothetical organic cage outcomes to be computationally modelled. From the screen, 225 cages were identified experimentally using mass spectrometry, 54 of which were cleanly formed as a single topology as determined by both turbidity measurements and 1H NMR spectroscopy. Integration of these characterisation methods into a fully automated Python pipeline, named cagey, led to over a 350-fold decrease in the time required for data analysis. This work highlights the advantages of combining automated synthesis, characterisation, and analysis, for large-scale data curation towards an accessible data-driven materials discovery approach.
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Affiliation(s)
- Annabel R Basford
- Department of Chemistry, Molecular Sciences Research Hub, Imperial College London White City Campus, 82 Wood Lane W12 0BZ UK
| | - Steven K Bennett
- Department of Chemistry, Molecular Sciences Research Hub, Imperial College London White City Campus, 82 Wood Lane W12 0BZ UK
| | - Muye Xiao
- Department of Chemistry, Molecular Sciences Research Hub, Imperial College London White City Campus, 82 Wood Lane W12 0BZ UK
| | - Lukas Turcani
- Department of Chemistry, Molecular Sciences Research Hub, Imperial College London White City Campus, 82 Wood Lane W12 0BZ UK
| | - Jasmine Allen
- Department of Chemistry, Molecular Sciences Research Hub, Imperial College London White City Campus, 82 Wood Lane W12 0BZ UK
| | - Kim E Jelfs
- Department of Chemistry, Molecular Sciences Research Hub, Imperial College London White City Campus, 82 Wood Lane W12 0BZ UK
| | - Rebecca L Greenaway
- Department of Chemistry, Molecular Sciences Research Hub, Imperial College London White City Campus, 82 Wood Lane W12 0BZ UK
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2
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Andrews KG, Horton PN, Coles SJ. Programmable synthesis of organic cages with reduced symmetry. Chem Sci 2024; 15:6536-6543. [PMID: 38699263 PMCID: PMC11062111 DOI: 10.1039/d4sc00889h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2024] [Accepted: 03/31/2024] [Indexed: 05/05/2024] Open
Abstract
Integrating symmetry-reducing methods into self-assembly methodology is desirable to efficiently realise the full potential of molecular cages as hosts and catalysts. Although techniques have been explored for metal organic (coordination) cages, rational strategies to develop low symmetry organic cages remain limited. In this article, we describe rules to program the shape and symmetry of organic cage cavities by designing edge pieces that bias the orientation of the amide linkages. We apply the rules to synthesise cages with well-defined cavities, supported by evidence from crystallography, spectroscopy and modelling. Access to low-symmetry, self-assembled organic cages such as those presented, will widen the current bottleneck preventing study of organic enzyme mimics, and provide synthetic tools for novel functional material design.
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Affiliation(s)
- Keith G Andrews
- Department of Chemistry, Chemistry Research Laboratory, University of Oxford Oxford OX1 3TA UK
- Department of Chemistry, Durham University Lower Mount Joy, South Rd Durham DH1 3LE UK
| | - Peter N Horton
- UK National Crystallography Service, School of Chemistry, Faculty of Engineering and Physical Sciences, University of Southampton Southampton SO17 1BJ UK
| | - Simon J Coles
- UK National Crystallography Service, School of Chemistry, Faculty of Engineering and Physical Sciences, University of Southampton Southampton SO17 1BJ UK
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3
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Xu Z, Ye Y, Liu Y, Liu H, Jiang S. Design and assembly of porous organic cages. Chem Commun (Camb) 2024; 60:2261-2282. [PMID: 38318641 DOI: 10.1039/d3cc05091b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2024]
Abstract
Porous organic cages (POCs) represent a notable category of porous materials, showing remarkable material properties due to their inherent porosity. Unlike extended frameworks which are constructed by strong covalent or coordination bonds, POCs are composed of discrete molecular units held together by weak intermolecular forces. Their structure and chemical traits can be systematically tailored, making them suitable for a range of applications including gas storage and separation, molecular separation and recognition, catalysis, and proton and ion conduction. This review provides a comprehensive overview of POCs, covering their synthesis methods, structure and properties, computational approaches, and applications, serving as a primer for those who are new to the domain. A special emphasis is placed on the growing role of computational methods, highlighting how advanced data-driven techniques and automation are increasingly aiding the rapid exploration and understanding of POCs. We conclude by addressing the prevailing challenges and future prospects in the field.
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Affiliation(s)
- Zezhao Xu
- School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China.
| | - Yangzhi Ye
- School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China.
| | - Yilan Liu
- School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China.
| | - Huiyu Liu
- School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China.
| | - Shan Jiang
- School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China.
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4
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Cougnon FBL, Stefankiewicz AR, Ulrich S. Dynamic covalent synthesis. Chem Sci 2024; 15:879-895. [PMID: 38239698 PMCID: PMC10793650 DOI: 10.1039/d3sc05343a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Accepted: 12/10/2023] [Indexed: 01/22/2024] Open
Abstract
Dynamic covalent synthesis aims to precisely control the assembly of simple building blocks linked by reversible covalent bonds to generate a single, structurally complex, product. In recent years, considerable progress in the programmability of dynamic covalent systems has enabled easy access to a broad range of assemblies, including macrocycles, shape-persistent cages, unconventional foldamers and mechanically-interlocked species (catenanes, knots, etc.). The reversibility of the covalent linkages can be either switched off to yield stable, isolable products or activated by specific physico-chemical stimuli, allowing the assemblies to adapt and respond to environmental changes in a controlled manner. This activatable dynamic property makes dynamic covalent assemblies particularly attractive for the design of complex matter, smart chemical systems, out-of-equilibrium systems, and molecular devices.
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Affiliation(s)
- Fabien B L Cougnon
- Department of Chemistry and Nanoscience Centre, University of Jyväskylä Jyväskylä Finland
| | - Artur R Stefankiewicz
- Centre for Advanced Technology and Faculty of Chemistry, Adam Mickiewicz University Poznań Poland
| | - Sébastien Ulrich
- Institut des Biomolécules Max Mousseron (IBMM), Université de Montpellier, CNRS, ENSCM Montpellier France
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5
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Mihara N, Machida A, Takeda Y, Shiga T, Ishii A, Nihei M. Formation and Growth of Atomic Scale Seeds of Au Nanoparticle in the Nanospace of an Organic Cage Molecule. Chemistry 2023:e202302604. [PMID: 37743250 DOI: 10.1002/chem.202302604] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Revised: 09/15/2023] [Accepted: 09/21/2023] [Indexed: 09/26/2023]
Abstract
Seed-mediated growth has been widely used to synthesize noble metal nanoparticles with controlled size and shape. Although it is becoming possible to directly observe the nucleation process of metal atoms at the single atom level by using transmission electron microscopy (TEM), it is challenging to control the formation and growth of seeds with only a few metal atoms in homogeneous solution systems. This work reports site-selective formation and growth of atomic scale seeds of the Au nanoparticle in a nanospace of an organic cage molecule. We synthesized a cage molecule with amines and phenols, which were found to both capture and reduce Au(III) ions to spontaneously form the atomic scale seeds containing Au(0) in the nanospace. The growth reaction of the atomic scale seeds afforded Au nanoparticles with an average diameter of 2.0±0.2 nm, which is in good agreement with the inner diameter of the cage molecule.
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Affiliation(s)
- Nozomi Mihara
- Department of Chemistry, Institute of Pure and Applied Sciences, University of Tsukuba, Tennodai 1-1-1, Tsukuba, Ibaraki, 305-8577, Japan
| | - Ayaka Machida
- Department of Chemistry, Institute of Pure and Applied Sciences, University of Tsukuba, Tennodai 1-1-1, Tsukuba, Ibaraki, 305-8577, Japan
| | - Yuko Takeda
- Department of Chemistry, Institute of Pure and Applied Sciences, University of Tsukuba, Tennodai 1-1-1, Tsukuba, Ibaraki, 305-8577, Japan
| | - Takuya Shiga
- Department of Chemistry, Institute of Pure and Applied Sciences, University of Tsukuba, Tennodai 1-1-1, Tsukuba, Ibaraki, 305-8577, Japan
| | - Ayumi Ishii
- Department of Chemistry and Biochemistry, School of Advanced Science and Engineering, Waseda University, Okubo 3-4-1, Shinjyuku, Tokyo, 169-8555, Japan
| | - Masayuki Nihei
- Department of Chemistry, Institute of Pure and Applied Sciences, University of Tsukuba, Tennodai 1-1-1, Tsukuba, Ibaraki, 305-8577, Japan
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6
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Kurisingal JF, Yun H, Hong CS. Porous organic materials for iodine adsorption. JOURNAL OF HAZARDOUS MATERIALS 2023; 458:131835. [PMID: 37348374 DOI: 10.1016/j.jhazmat.2023.131835] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Revised: 05/23/2023] [Accepted: 06/10/2023] [Indexed: 06/24/2023]
Abstract
The nuclear industry will continue to develop rapidly and produce energy in the foreseeable future; however, it presents unique challenges regarding the disposal of released waste radionuclides because of their volatility and long half-life. The release of radioactive isotopes of iodine from uranium fission reactions is a challenge. Although various adsorbents have been explored for the uptake of iodine, there is still interest in novel adsorbents. The novel adsorbents should be synthesized using reliable and economically feasible synthetic procedures. Herein, we discussed the state-of-the-art performance of various categories of porous organic materials including covalent organic frameworks, covalent triazine frameworks, porous aromatic frameworks, porous organic cages, among other porous organic polymers for the uptake of iodine. This review discussed the synthesis of porous organic materials and their iodine adsorption capacity and reusability. Finally, the challenges and prospects for iodine capture using porous organic materials are highlighted.
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Affiliation(s)
| | - Hongryeol Yun
- Department of Chemistry, Korea University, Seoul 02841, Republic of Korea
| | - Chang Seop Hong
- Department of Chemistry, Korea University, Seoul 02841, Republic of Korea.
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7
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Chen Q, Li Z, Lei Y, Chen Y, Tang H, Wu G, Sun B, Wei Y, Jiao T, Zhang S, Huang F, Wang L, Li H. The sharp structural switch of covalent cages mediated by subtle variation of directing groups. Nat Commun 2023; 14:4627. [PMID: 37532710 PMCID: PMC10397198 DOI: 10.1038/s41467-023-40255-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2023] [Accepted: 07/19/2023] [Indexed: 08/04/2023] Open
Abstract
It is considered a more formidable task to precisely control the self-assembled products containing purely covalent components, due to a lack of intrinsic templates such as transition metals to suppress entropy loss during self-assembly. Here, we attempt to tackle this challenge by using directing groups. That is, the self-assembly products of condensing a 1:2 mixture of a tetraformyl and a biamine can be precisely controlled by slightly changing the substituent groups in the aldehyde precursor. This is because different directing groups provide hydrogen bonds with different modes to the adjacent imine units, so that the building blocks are endowed with totally different conformations. Each conformation favors the formation of a specific product that is thus produced selectively, including chiral and achiral cages. These results of using a specific directing group to favor a target product pave the way for accomplishing atom economy in synthesizing purely covalent molecules without relying on toxic transition metal templates.
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Affiliation(s)
- Qiong Chen
- Department of Chemistry, Zhejiang University, Hangzhou, 310058, PR China
| | - Zhaoyong Li
- Department of Chemistry, Zhejiang University, Hangzhou, 310058, PR China
- Key Laboratory of Excited-State Materials of Zhejiang Province, Zhejiang University, Hangzhou, 310058, PR China
| | - Ye Lei
- Department of Chemistry, Zhejiang University, Hangzhou, 310058, PR China
| | - Yixin Chen
- Department of Chemistry, Zhejiang University, Hangzhou, 310058, PR China
| | - Hua Tang
- Department of Chemistry, Zhejiang University, Hangzhou, 310058, PR China
| | - Guangcheng Wu
- Department of Chemistry, Zhejiang University, Hangzhou, 310058, PR China
| | - Bin Sun
- ZJU-Hangzhou Global Scientific and Technological Innovation Center, Zhejiang University, Hangzhou, 311215, PR China
| | - Yuxi Wei
- Department of Chemistry, Zhejiang University, Hangzhou, 310058, PR China
| | - Tianyu Jiao
- Department of Chemistry, Zhejiang University, Hangzhou, 310058, PR China
| | - Songna Zhang
- ZJU-Hangzhou Global Scientific and Technological Innovation Center, Zhejiang University, Hangzhou, 311215, PR China.
| | - Feihe Huang
- Department of Chemistry, Zhejiang University, Hangzhou, 310058, PR China.
- ZJU-Hangzhou Global Scientific and Technological Innovation Center, Zhejiang University, Hangzhou, 311215, PR China.
| | - Linjun Wang
- Department of Chemistry, Zhejiang University, Hangzhou, 310058, PR China.
- Key Laboratory of Excited-State Materials of Zhejiang Province, Zhejiang University, Hangzhou, 310058, PR China.
| | - Hao Li
- Department of Chemistry, Zhejiang University, Hangzhou, 310058, PR China.
- ZJU-Hangzhou Global Scientific and Technological Innovation Center, Zhejiang University, Hangzhou, 311215, PR China.
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8
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Horiuchi S, Hayashi M, Umakoshi K. Noncovalent tailoring of coordination complexes by resorcin[4]arene-based supramolecular hosts. Dalton Trans 2023; 52:6604-6618. [PMID: 37128873 DOI: 10.1039/d3dt00710c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Molecular recognition of guest molecules in a confined cavity is one of the important phenomena in biological and artificial molecular systems. When the guest is trapped within an artificial nano-space, its conformation is fixed in an unusual fashion by noncovalent interactions with host frameworks, and also the guest is kept away from the bulk solvent by the steric effect of the host. Therefore, host-guest formations lead to the effective modulation of the chemical and physical properties of guests via noncovalent interactions. In contrast to the many examples of organic guests, the examples of host-guest formation using coordination complex guests have been less explored. This is simply due to the size and shape complementarity problem between small hosts and large coordination complex guests. Resorcin[4]arene-based supramolecular hosts have been shown to provide internal cavities that are large enough to fully accommodate coordination complexes within the internal spaces via effective molecular interactions. In this article, we focus on supramolecular strategies to control the chemical and physical properties of the coordination complex guests within resorcin[4]arene-based supramolecular hosts. By the careful selection of the host and guest complexes, these combinations can produce a new supramolecular system, showing unusual structures, redox, catalytic, and photophysical properties derived from the entrapped coordination complexes.
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Affiliation(s)
- Shinnosuke Horiuchi
- Division of Chemistry and Materials Science, Graduate School of Engineering, Nagasaki University, 1-14 Bunkyo-machi, Nagasaki 852-8521, Japan.
- Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1 Komaba, Meguro-ku, Tokyo 153-8902, Japan
| | - Mikihiro Hayashi
- Faculty of Education, Nagasaki University, 1-14 Bunkyo-machi, Nagasaki 852-8521, Japan
| | - Keisuke Umakoshi
- Division of Chemistry and Materials Science, Graduate School of Engineering, Nagasaki University, 1-14 Bunkyo-machi, Nagasaki 852-8521, Japan.
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9
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Abstract
Porous organic cages (POCs) are a relatively new class of low-density crystalline materials that have emerged as a versatile platform for investigating molecular recognition, gas storage and separation, and proton conduction, with potential applications in the fields of porous liquids, highly permeable membranes, heterogeneous catalysis, and microreactors. In common with highly extended porous structures, such as metal-organic frameworks (MOFs), covalent organic frameworks (COFs), and porous organic polymers (POPs), POCs possess all of the advantages of highly specific surface areas, porosities, open pore channels, and tunable structures. In addition, they have discrete molecular structures and exhibit good to excellent solubilities in common solvents, enabling their solution dispersibility and processability─properties that are not readily available in the case of the well-established, insoluble, extended porous frameworks. Here, we present a critical review summarizing in detail recent progress and breakthroughs─especially during the past five years─of all the POCs while taking a close look at their strategic design, precise synthesis, including both irreversible bond-forming chemistry and dynamic covalent chemistry, advanced characterization, and diverse applications. We highlight representative POC examples in an attempt to gain some understanding of their structure-function relationships. We also discuss future challenges and opportunities in the design, synthesis, characterization, and application of POCs. We anticipate that this review will be useful to researchers working in this field when it comes to designing and developing new POCs with desired functions.
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Affiliation(s)
- Xinchun Yang
- Faculty of Materials Science and Energy Engineering/Institute of Technology for Carbon Neutrality, Shenzhen Institute of Advanced Technology (SIAT), Chinese Academy of Sciences (CAS), Shenzhen 518055, China
- Shenzhen Key Laboratory of Energy Materials for Carbon Neutrality, Shenzhen Institute of Advanced Technology (SIAT), Chinese Academy of Sciences (CAS), Shenzhen 518055, China
| | - Zakir Ullah
- Convergence Research Center for Insect Vectors, Division of Life Sciences, College of Life Sciences and Bioengineering, Incheon National University, Incheon 22012, South Korea
| | - J Fraser Stoddart
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
- School of Chemistry, University of New South Wales, Sydney, New South Wales 2052, Australia
- Stoddart Institute of Molecular Science, Department of Chemistry, Zhejiang University, Hangzhou 310027, China
- ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou 311215, China
| | - Cafer T Yavuz
- Oxide & Organic Nanomaterials for Energy & Environment Laboratory, Physical Science & Engineering (PSE), King Abdullah University of Science and Technology (KAUST), 4700 KAUST, Thuwal 23955, Saudi Arabia
- Advanced Membranes & Porous Materials Center, PSE, KAUST, 4700 KAUST, Thuwal 23955, Saudi Arabia
- KAUST Catalysis Center, PSE, KAUST, 4700 KAUST, Thuwal 23955, Saudi Arabia
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10
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Horiuchi S, Yamaguchi T, Tessarolo J, Tanaka H, Sakuda E, Arikawa Y, Meggers E, Clever GH, Umakoshi K. Symmetry-breaking host-guest assembly in a hydrogen-bonded supramolecular system. Nat Commun 2023; 14:155. [PMID: 36631447 PMCID: PMC9834293 DOI: 10.1038/s41467-023-35850-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2022] [Accepted: 01/04/2023] [Indexed: 01/13/2023] Open
Abstract
Bio-inspired self-assembly is invaluable to create well-defined giant structures from small molecular units. Owing to a large entropy loss in the self-assembly process, highly symmetric structures are typically obtained as thermodynamic products while formation of low symmetric assemblies is still challenging. In this study, we report the symmetry-breaking self-assembly of a defined C1-symmetric supramolecular structure from an Oh-symmetric hydrogen-bonded resorcin[4]arene capsule and C2-symmetric cationic bis-cyclometalated Ir complexes, carrying sterically demanding tertiary butyl (tBu) groups, on the basis of synergistic effects of weak binding forces. The flexible capsule framework shows a large structural change upon guest binding to form a distorted resorcin[4]arene hexameric capsule, providing an asymmetric cavity. Location of the chiral guest inside the anisotropic environment leads to modulation of its Electric Dipole (ED) and Magnetic Dipole (MD) transition moments in the excited state, causing an increased emission quantum yield, longer emission lifetime, and enhancement of the dissymmetry factor (glum) in the circularly polarized luminescence.
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Affiliation(s)
- Shinnosuke Horiuchi
- Division of Chemistry and Materials Science, Graduate School of Engineering, Nagasaki University, 1-14 Bunkyo-machi, Nagasaki, 852-8521, Japan. .,Department of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn-Straße 6, 44227, Dortmund, Germany. .,Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1 Komaba, Meguro-ku, Tokyo, 153-8902, Japan.
| | - Takumi Yamaguchi
- School of Materials Science, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi, 923-1292, Japan
| | - Jacopo Tessarolo
- Department of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn-Straße 6, 44227, Dortmund, Germany
| | - Hirotaka Tanaka
- Division of Chemistry and Materials Science, Graduate School of Engineering, Nagasaki University, 1-14 Bunkyo-machi, Nagasaki, 852-8521, Japan
| | - Eri Sakuda
- Division of Chemistry and Materials Science, Graduate School of Engineering, Nagasaki University, 1-14 Bunkyo-machi, Nagasaki, 852-8521, Japan.,Department of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn-Straße 6, 44227, Dortmund, Germany
| | - Yasuhiro Arikawa
- Division of Chemistry and Materials Science, Graduate School of Engineering, Nagasaki University, 1-14 Bunkyo-machi, Nagasaki, 852-8521, Japan
| | - Eric Meggers
- Fachbereich Chemie, Philipps-Universität Marburg, Hans-Meerwein-Straße 4, 35043, Marburg, Germany
| | - Guido H Clever
- Department of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn-Straße 6, 44227, Dortmund, Germany.
| | - Keisuke Umakoshi
- Division of Chemistry and Materials Science, Graduate School of Engineering, Nagasaki University, 1-14 Bunkyo-machi, Nagasaki, 852-8521, Japan.
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11
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Chen J, Ma Z, Li Y, Cao S, Zhuang Q. Research Progress in Metal-Porous Organic Cage Nanocomposites. CHINESE J ORG CHEM 2023. [DOI: 10.6023/cjoc202207020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/11/2023]
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12
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Skowronek P, Prusinowska N, Bardziński M, Janiak A. Symmetry-driven diastereoselective functionalization of simple trianglamine. Org Biomol Chem 2022; 20:7216-7220. [PMID: 36044005 DOI: 10.1039/d2ob01226j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We have found that derivatization of the trianglamine macrocycle by aliphatic aldehydes leads selectively to one of the two possible diastereomeric aminal products. X-ray analysis, NMR measurements and DFT calculations pointed to the product possessing a higher symmetry.
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Affiliation(s)
- Paweł Skowronek
- Department of Chemistry, Adam Mickiewicz University, Uniwersytetu Poznańskiego 8, 61-614 Poznań, Poland.
| | - Natalia Prusinowska
- Department of Chemistry, Adam Mickiewicz University, Uniwersytetu Poznańskiego 8, 61-614 Poznań, Poland.
| | - Mateusz Bardziński
- Department of Chemistry, Adam Mickiewicz University, Uniwersytetu Poznańskiego 8, 61-614 Poznań, Poland.
| | - Agnieszka Janiak
- Department of Chemistry, Adam Mickiewicz University, Uniwersytetu Poznańskiego 8, 61-614 Poznań, Poland.
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13
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Saha R, Mondal B, Mukherjee PS. Molecular Cavity for Catalysis and Formation of Metal Nanoparticles for Use in Catalysis. Chem Rev 2022; 122:12244-12307. [PMID: 35438968 DOI: 10.1021/acs.chemrev.1c00811] [Citation(s) in RCA: 64] [Impact Index Per Article: 32.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
The employment of weak intermolecular interactions in supramolecular chemistry offers an alternative approach to project artificial chemical environments like the active sites of enzymes. Discrete molecular architectures with defined shapes and geometries have become a revolutionary field of research in recent years because of their intrinsic porosity and ease of synthesis using dynamic non-covalent/covalent interactions. Several porous molecular cages have been constructed from simple building blocks by self-assembly, which undergoes many self-correction processes to form the final architecture. These supramolecular systems have been developed to demonstrate numerous applications, such as guest stabilization, drug delivery, catalysis, smart materials, and many other related fields. In this respect, catalysis in confined nanospaces using such supramolecular cages has seen significant growth over the years. These porous discrete cages contain suitable apertures for easy intake of substrates and smooth release of products to exhibit exceptional catalytic efficacy. This review highlights recent advancements in catalytic activity influenced by the nanocavities of hydrogen-bonded cages, metal-ligand coordination cages, and dynamic or reversible covalently bonded organic cages in different solvent media. Synthetic strategies for these three types of supramolecular systems are discussed briefly and follow similar and simplistic approaches manifested by simple starting materials and benign conditions. These examples demonstrate the progress of various functionalized molecular cages for specific chemical transformations in aqueous and nonaqueous media. Finally, we discuss the enduring challenges related to porous cage compounds that need to be overcome for further developments in this field of work.
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Affiliation(s)
- Rupak Saha
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore-560 012, India
| | - Bijnaneswar Mondal
- Department of Chemistry, Guru Ghasidas Vishwavidyalaya, Bilaspur-495 009, Chhattisgarh, India
| | - Partha Sarathi Mukherjee
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore-560 012, India
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15
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Poole III DA, Bobylev EO, Mathew S, Reek JNH. Entropy directs the self-assembly of supramolecular palladium coordination macrocycles and cages. Chem Sci 2022; 13:10141-10148. [PMID: 36128226 PMCID: PMC9430592 DOI: 10.1039/d2sc03154j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2022] [Accepted: 08/09/2022] [Indexed: 12/02/2022] Open
Abstract
The self-assembly of palladium-based cages is frequently rationalized via the cumulative enthalpy (ΔH) of bonds between coordination nodes (M, i.e., Pd) and ligand (L) components. This focus on enthalpic rationale limits the complete understanding of the Gibbs free energy (ΔG) for self-assembly, as entropic (ΔS) contributions are overlooked. Here, we present a study of the M2linL3 intermediate species (M = dinitrato(N,N,N′,N′-tetramethylethylenediamine)palladium(ii), linL = 4,4′-bipyridine), formed during the synthesis of triangle-shaped (M3linL3) and square-shaped (M4linL4) coordination macrocycles. Thermochemical analyses by variable temperature (VT) 1H-NMR revealed that the M2linL3 intermediate exhibited an unfavorable (relative) ΔS compared to M3linL3 (triangle, ΔTΔS = +5.22 kcal mol−1) or M4linL4 (square, ΔTΔS = +2.37 kcal mol−1) macrocycles. Further analysis of these constructs with molecular dynamics (MD) identified that the self-assembly process is driven by ΔG losses facilitated by increases in solvation entropy (ΔSsolv, i.e., depletion of solvent accessible surface area) that drives the self-assembly from “open” intermediates toward “closed” macrocyclic products. Expansion of our computational approach to the analysis of self-assembly in PdnbenL2n cages (benL = 4,4'-(5-ethoxy-1,3-phenylene)dipyridine), demonstrated that ΔSsolv contributions drive the self-assembly of both thermodynamic cage products (i.e., Pd12benL24) and kinetically-trapped intermediates (i.e., Pd8cL16). These studies demonstrate that ΔS drives the self-assembly of supramolecular palladium-based coordination macrocycles and cages. As this ΔS contribution arises from solvation, these findings broadly reflect the thermodynamic drive of self-assembly to form compact structures.![]()
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Affiliation(s)
- D. A. Poole III
- Homogeneous, Supramolecular, and Bioinspired Catalysis Group, van ‘t Hoff Institute for Molecular Science (HIMS), University of Amsterdam (UvA), Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - E. O. Bobylev
- Homogeneous, Supramolecular, and Bioinspired Catalysis Group, van ‘t Hoff Institute for Molecular Science (HIMS), University of Amsterdam (UvA), Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - S. Mathew
- Homogeneous, Supramolecular, and Bioinspired Catalysis Group, van ‘t Hoff Institute for Molecular Science (HIMS), University of Amsterdam (UvA), Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - J. N. H. Reek
- Homogeneous, Supramolecular, and Bioinspired Catalysis Group, van ‘t Hoff Institute for Molecular Science (HIMS), University of Amsterdam (UvA), Science Park 904, 1098 XH Amsterdam, The Netherlands
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16
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Hu D, Zhang J, Liu M. Recent advances in the applications of porous organic cages. Chem Commun (Camb) 2022; 58:11333-11346. [DOI: 10.1039/d2cc03692d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Porous organic cages (POCs) have emerged as a new sub-class of porous materials that stand out by virtue of their tunability, modularity, and processibility. Similar to other porous materials such...
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17
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Holsten M, Feierabend S, Elbert SM, Rominger F, Oeser T, Mastalerz M. Soluble Congeners of Prior Insoluble Shape-Persistent Imine Cages. Chemistry 2021; 27:9383-9390. [PMID: 33848032 PMCID: PMC8362185 DOI: 10.1002/chem.202100666] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2021] [Indexed: 12/12/2022]
Abstract
One of the most applied reaction types to synthesize shape‐persistent organic cage compounds is the imine condensation reaction and it is assumed that the formed cages are thermodynamically controlled products due to the reversibility of the imine condensation. However, most of the synthesized imine cages reported are formed as precipitate from the reaction mixture and therefore rather may be kinetically controlled products. There are even examples in literature, where resulting cages are not soluble at all in common organic solvents to characterize or study their formation by NMR spectroscopy in solution. Here, a triptycene triamine containing three solubilizing n‐hexyloxy chains has been used to synthesize soluble congeners of prior insoluble cages. This allowed us to study the formation as well as the reversibility of cage formation in solution by investigating exchange of building blocks between the cages and deuterated derivatives thereof.
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Affiliation(s)
- Mattes Holsten
- Organisch-Chemisches Institut, Ruprecht-Karls-Universität Heidelberg, Im Neuenheimer Feld 270, 69120, Heidelberg, Germany
| | - Sarah Feierabend
- Organisch-Chemisches Institut, Ruprecht-Karls-Universität Heidelberg, Im Neuenheimer Feld 270, 69120, Heidelberg, Germany
| | - Sven M Elbert
- Organisch-Chemisches Institut, Ruprecht-Karls-Universität Heidelberg, Im Neuenheimer Feld 270, 69120, Heidelberg, Germany
| | - Frank Rominger
- Organisch-Chemisches Institut, Ruprecht-Karls-Universität Heidelberg, Im Neuenheimer Feld 270, 69120, Heidelberg, Germany
| | - Thomas Oeser
- Organisch-Chemisches Institut, Ruprecht-Karls-Universität Heidelberg, Im Neuenheimer Feld 270, 69120, Heidelberg, Germany
| | - Michael Mastalerz
- Organisch-Chemisches Institut, Ruprecht-Karls-Universität Heidelberg, Im Neuenheimer Feld 270, 69120, Heidelberg, Germany
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18
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Wagner P, Rominger F, Zhang W, Gross JH, Elbert SM, Schröder RR, Mastalerz M. Chiral Self-sorting of Giant Cubic [8+12] Salicylimine Cage Compounds. Angew Chem Int Ed Engl 2021; 60:8896-8904. [PMID: 33476442 PMCID: PMC8048989 DOI: 10.1002/anie.202016592] [Citation(s) in RCA: 52] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2020] [Revised: 01/21/2021] [Indexed: 12/13/2022]
Abstract
Chiral self-sorting is intricately connected to the complicated chiral processes observed in nature and no artificial systems of comparably complexity have been generated by chemists. However, only a few examples of purely organic molecules have been reported so far, where the self-sorting process could be controlled. Herein, we describe the chiral self-sorting of large cubic [8+12] salicylimine cage compounds based on a chiral TBTQ precursor. Out of 23 possible cage isomers only the enantiopure and a meso cage were observed to be formed, which have been unambiguously characterized by single crystal X-ray diffraction. Furthermore, by careful choice of solvent the formation of meso cage could be controlled. With internal diameters of din =3.3-3.5 nm these cages are among the largest organic cage compounds characterized and show very high specific surface areas up to approx. 1500 m2 g-1 after desolvation.
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Affiliation(s)
- Philippe Wagner
- Organisch-Chemisches InstitutRuprecht-Karls-Universität HeidelbergIm Neuenheimer Feld 27069120HeidelbergGermany
| | - Frank Rominger
- Organisch-Chemisches InstitutRuprecht-Karls-Universität HeidelbergIm Neuenheimer Feld 27069120HeidelbergGermany
| | - Wen‐Shan Zhang
- Centre for Advanced MaterialsRuprecht-Karls-Universität HeidelbergIm Neuenheimer Feld 22569120HeidelbergGermany
| | - Jürgen H. Gross
- Organisch-Chemisches InstitutRuprecht-Karls-Universität HeidelbergIm Neuenheimer Feld 27069120HeidelbergGermany
| | - Sven M. Elbert
- Organisch-Chemisches InstitutRuprecht-Karls-Universität HeidelbergIm Neuenheimer Feld 27069120HeidelbergGermany
| | - Rasmus R. Schröder
- Centre for Advanced MaterialsRuprecht-Karls-Universität HeidelbergIm Neuenheimer Feld 22569120HeidelbergGermany
| | - Michael Mastalerz
- Organisch-Chemisches InstitutRuprecht-Karls-Universität HeidelbergIm Neuenheimer Feld 27069120HeidelbergGermany
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19
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Wagner P, Rominger F, Zhang W, Gross JH, Elbert SM, Schröder RR, Mastalerz M. Chiral Self‐sorting of Giant Cubic [8+12] Salicylimine Cage Compounds. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202016592] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Philippe Wagner
- Organisch-Chemisches Institut Ruprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 270 69120 Heidelberg Germany
| | - Frank Rominger
- Organisch-Chemisches Institut Ruprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 270 69120 Heidelberg Germany
| | - Wen‐Shan Zhang
- Centre for Advanced Materials Ruprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 225 69120 Heidelberg Germany
| | - Jürgen H. Gross
- Organisch-Chemisches Institut Ruprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 270 69120 Heidelberg Germany
| | - Sven M. Elbert
- Organisch-Chemisches Institut Ruprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 270 69120 Heidelberg Germany
| | - Rasmus R. Schröder
- Centre for Advanced Materials Ruprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 225 69120 Heidelberg Germany
| | - Michael Mastalerz
- Organisch-Chemisches Institut Ruprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 270 69120 Heidelberg Germany
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20
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Hähsler M, Mastalerz M. A Giant [8+12] Boronic Ester Cage with 48 Terminal Alkene Units in the Periphery for Postsynthetic Alkene Metathesis. Chemistry 2021; 27:233-237. [PMID: 32840913 PMCID: PMC7839526 DOI: 10.1002/chem.202003675] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2020] [Revised: 08/24/2020] [Indexed: 11/21/2022]
Abstract
Dynamic covalent chemistry (DCC) is a powerful synthetic tool to construct large defined molecules in one step from rather simple precursors. The advantage of the intrinsic dynamics of the applied reversible reaction steps is a self‐correction under the chosen conditions, to achieve high yields of the target compound. To date, only a few examples are known, in which DCC was used to build up a molecular defined but larger product that was chemically transferred to a more stable congener in a second (irreversible) step. Here, we present a nanometer‐sized [8+12] boronic ester cage containing 48 peripheral terminal alkene units which allows to put a hydrocarbon exoskeleton around the cage via alkene metathesis.
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Affiliation(s)
- Martin Hähsler
- Institute of Organic Chemistry, Heidelberg University, Heidelberg, Im Neuenheimer Feld 270, 69120, Heidelberg, Germany
| | - Michael Mastalerz
- Institute of Organic Chemistry, Heidelberg University, Heidelberg, Im Neuenheimer Feld 270, 69120, Heidelberg, Germany
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21
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Koo J, Kim I, Kim Y, Cho D, Hwang IC, Mukhopadhyay RD, Song H, Ko YH, Dhamija A, Lee H, Hwang W, Kim S, Baik MH, Kim K. Gigantic Porphyrinic Cages. Chem 2020. [DOI: 10.1016/j.chempr.2020.10.002] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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22
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Semakin AN, Nelyubina YV, Ioffe SL, Sukhorukov AY. 2,4,9‐Triazaadamantanes with “Clickable” Groups: Synthesis, Structure and Applications as Tripodal Platforms. European J Org Chem 2020. [DOI: 10.1002/ejoc.202000832] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Artem N. Semakin
- Laboratory of organic and metal‐organic nitrogen‐oxygen systems N. D. Zelinsky Institute of Organic Chemistry Leninsky prospect, 47 119991 Moscow Russia
| | - Yulia V. Nelyubina
- Center for molecular composition studies A. N. Nesmeyanov Institute of Organoelement Compounds Vavilov str. 28 119991 Moscow Russia
| | - Sema L. Ioffe
- Laboratory of organic and metal‐organic nitrogen‐oxygen systems N. D. Zelinsky Institute of Organic Chemistry Leninsky prospect, 47 119991 Moscow Russia
| | - Alexey Yu. Sukhorukov
- Laboratory of organic and metal‐organic nitrogen‐oxygen systems N. D. Zelinsky Institute of Organic Chemistry Leninsky prospect, 47 119991 Moscow Russia
- Department of Innovational Materials and Technologies Chemistry Plekhanov Russian University of Economics Stremyanny per. 36 117997 Moscow Russia
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23
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Gayen KS, Das T, Chatterjee N. Recent Advances in Tris‐Primary Amine Based Organic Imine Cages and Related Amine Macrocycles. European J Org Chem 2020. [DOI: 10.1002/ejoc.202001194] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
| | - Titiksha Das
- Kanchrapara College University of Kalyani Kalyani West Bengal India
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24
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Zhang L, Jin Y, Tao G, Gong Y, Hu Y, He L, Zhang W. Desymmetrized Vertex Design toward a Molecular Cage with Unusual Topology. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202007454] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Lei Zhang
- College of Chemistry Sichuan University Chengdu 610064 China
- Department of Chemistry University of Colorado Boulder Colorado 80309 USA
| | - Yinghua Jin
- Department of Chemistry University of Colorado Boulder Colorado 80309 USA
| | - Guo‐Hong Tao
- College of Chemistry Sichuan University Chengdu 610064 China
| | - Yu Gong
- Department of Chemistry University of Colorado Boulder Colorado 80309 USA
| | - Yiming Hu
- Department of Chemistry University of Colorado Boulder Colorado 80309 USA
| | - Ling He
- College of Chemistry Sichuan University Chengdu 610064 China
| | - Wei Zhang
- Department of Chemistry University of Colorado Boulder Colorado 80309 USA
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25
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Alexandre P, Zhang W, Rominger F, Elbert SM, Schröder RR, Mastalerz M. A Robust Porous Quinoline Cage: Transformation of a [4+6] Salicylimine Cage by Povarov Cyclization. Angew Chem Int Ed Engl 2020; 59:19675-19679. [PMID: 32521080 PMCID: PMC7689861 DOI: 10.1002/anie.202007048] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2020] [Indexed: 12/18/2022]
Abstract
Porous shape-persistent organic cages have become the object of interest in recent years because they are soluble and thus processable from solution. A variety of cages can be achieved by applying dynamic covalent chemistry (DCC), but they are less chemically stable. Here the transformation of a salicylimine cage into a quinoline cage by a twelve-fold Povarov reaction as the key step is described. Besides the chemical stability of the cage over a broad pH regime, it shows a unique absorption and emission depending on acid concentration. Furthermore, thin films for the vapor detection of acids were investigated, showing color switches from pale-yellow to red, and characteristic emission profiles.
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Affiliation(s)
- Pierre‐Emmanuel Alexandre
- Organisch-Chemisches InstitutRuprecht-Karls-Universität HeidelbergIm Neuenheimer Feld 27069120HeidelbergGermany
| | - Wen‐Shan Zhang
- Centre for Advanced MaterialsRuprecht-Karls-Universität HeidelbergIm Neuenheimer Feld 22569120HeidelbergGermany
| | - Frank Rominger
- Organisch-Chemisches InstitutRuprecht-Karls-Universität HeidelbergIm Neuenheimer Feld 27069120HeidelbergGermany
| | - Sven M. Elbert
- Organisch-Chemisches InstitutRuprecht-Karls-Universität HeidelbergIm Neuenheimer Feld 27069120HeidelbergGermany
- Centre for Advanced MaterialsRuprecht-Karls-Universität HeidelbergIm Neuenheimer Feld 22569120HeidelbergGermany
| | - Rasmus R. Schröder
- Centre for Advanced MaterialsRuprecht-Karls-Universität HeidelbergIm Neuenheimer Feld 22569120HeidelbergGermany
| | - Michael Mastalerz
- Organisch-Chemisches InstitutRuprecht-Karls-Universität HeidelbergIm Neuenheimer Feld 27069120HeidelbergGermany
- Centre for Advanced MaterialsRuprecht-Karls-Universität HeidelbergIm Neuenheimer Feld 22569120HeidelbergGermany
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26
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Schick THG, Rominger F, Mastalerz M. Examination of the Dynamic Covalent Chemistry of [2 + 3]-Imine Cages. J Org Chem 2020; 85:13757-13771. [PMID: 32933246 PMCID: PMC7659045 DOI: 10.1021/acs.joc.0c01887] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The synthesis of shape-persistent organic cage compounds by the formation of imine bonds opens the possibility to realize cages of different sizes, geometries, topologies, and functions. It is generally assumed that the imine bond is rather chemically labile allowing a self-correction mechanism until thermodynamic equilibrium is reached, which is often the case if a cage is formed. However, there are some contradictory experimental data to this assumption. To get a deeper insight into the imine bond dynamics of covalent organic cages, we studied the formation and exchange of both dialdehydes and triamines of two different [2 + 3] imine cages with the aid of a deuterated dialdehyde molecular building block.
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Affiliation(s)
- Tobias H G Schick
- Organisch-Chemisches Institut, Ruprecht-Karls-Universität Heidelberg, Im Neuenheimer Feld 270, 69120 Heidelberg, Germany
| | - Frank Rominger
- Organisch-Chemisches Institut, Ruprecht-Karls-Universität Heidelberg, Im Neuenheimer Feld 270, 69120 Heidelberg, Germany
| | - Michael Mastalerz
- Organisch-Chemisches Institut, Ruprecht-Karls-Universität Heidelberg, Im Neuenheimer Feld 270, 69120 Heidelberg, Germany
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27
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Su K, Wang W, Du S, Ji C, Zhou M, Yuan D. Reticular Chemistry in the Construction of Porous Organic Cages. J Am Chem Soc 2020; 142:18060-18072. [PMID: 32938188 DOI: 10.1021/jacs.0c07367] [Citation(s) in RCA: 52] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Reticular chemistry offers the possibility of systematic design of porous materials with different pores by varying the building blocks, while the emerging porous organic cage (POC) system remains generally unexplored. A series of new POCs with dimeric cages with odd-even behaviors, unprecedented trimeric triangular prisms, and the largest recorded hexameric octahedra have been prepared. These POCs are all constructed from the same tetratopic tetraformylresorcin[4]arene cavitand by simply varying the diamine ligands through Schiff-base reactions and are fully characterized by X-ray crystallography, gas sorption measurements, NMR spectroscopy, and mass spectrometry. The odd-even effects in the POC conformation changes of the [2 + 4] dimeric cages have been confirmed by density functional theory calculations, which are the first examples of odd-even effects reported in the cavitand-based cage system. Moreover, the "V" shape phenylenediamine linkers are responsible for the novel [3 + 6] triangular prisms. The window size and environment can be easily functionalized by different groups, providing a promising platform for the construction of multivariate POCs. Use of linear phenylenediamines led to record-breakingly large [6 + 12] truncated octahedral cages, the maximum inner cavity diameters and volumes of which could be readily modulated by increasing the spacer length of the phenylenediamine linkers. This work can lead to an understanding of the self-assembly behaviors of POCs and also sheds light on the rational design of POC materials for practical applications.
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Affiliation(s)
- Kongzhao Su
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou 350002, P. R. China.,University of the Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Wenjing Wang
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou 350002, P. R. China
| | - Shunfu Du
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou 350002, P. R. China.,College of Chemistry, Fuzhou University, Fuzhou 350116, P. R. China
| | - Chunqing Ji
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou 350002, P. R. China.,University of the Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Mi Zhou
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou 350002, P. R. China
| | - Daqiang Yuan
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou 350002, P. R. China.,University of the Chinese Academy of Sciences, Beijing 100049, P. R. China
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28
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Abet V, Szczypiński FT, Little MA, Santolini V, Jones CD, Evans R, Wilson C, Wu X, Thorne MF, Bennison MJ, Cui P, Cooper AI, Jelfs KE, Slater AG. Inducing Social Self-Sorting in Organic Cages To Tune The Shape of The Internal Cavity. Angew Chem Int Ed Engl 2020; 59:16755-16763. [PMID: 32542926 PMCID: PMC7540416 DOI: 10.1002/anie.202007571] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2020] [Indexed: 12/22/2022]
Abstract
Many interesting target guest molecules have low symmetry, yet most methods for synthesising hosts result in highly symmetrical capsules. Methods of generating lower symmetry pores are thus required to maximise the binding affinity in host-guest complexes. Herein, we use mixtures of tetraaldehyde building blocks with cyclohexanediamine to access low-symmetry imine cages. Whether a low-energy cage is isolated can be correctly predicted from the thermodynamic preference observed in computational models. The stability of the observed structures depends on the geometrical match of the aldehyde building blocks. One bent aldehyde stands out as unable to assemble into high-symmetry cages-and the same aldehyde generates low-symmetry socially self-sorted cages when combined with a linear aldehyde. We exploit this finding to synthesise a family of low-symmetry cages containing heteroatoms, illustrating that pores of varying geometries and surface chemistries may be reliably accessed through computational prediction and self-sorting.
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Affiliation(s)
- Valentina Abet
- Department of Chemistry and Materials Innovation FactoryUniversity of LiverpoolCrown StreetLiverpoolL69 7ZDUK
| | - Filip T. Szczypiński
- Department of ChemistryImperial College LondonMolecular Sciences Research HubWhite City CampusLondonW12 0BZUK
| | - Marc A. Little
- Department of Chemistry and Materials Innovation FactoryUniversity of LiverpoolCrown StreetLiverpoolL69 7ZDUK
| | - Valentina Santolini
- Department of ChemistryImperial College LondonMolecular Sciences Research HubWhite City CampusLondonW12 0BZUK
| | - Christopher D. Jones
- Department of Chemistry and Materials Innovation FactoryUniversity of LiverpoolCrown StreetLiverpoolL69 7ZDUK
| | - Robert Evans
- Aston Institute of Materials Research, School of Engineering and Applied ScienceAston UniversityBirminghamB4 7ETUK
| | - Craig Wilson
- Department of Chemistry and Materials Innovation FactoryUniversity of LiverpoolCrown StreetLiverpoolL69 7ZDUK
| | - Xiaofeng Wu
- Department of Chemistry and Materials Innovation FactoryUniversity of LiverpoolCrown StreetLiverpoolL69 7ZDUK
| | - Michael F. Thorne
- Department of Chemistry and Materials Innovation FactoryUniversity of LiverpoolCrown StreetLiverpoolL69 7ZDUK
| | - Michael J. Bennison
- Department of Chemistry and Materials Innovation FactoryUniversity of LiverpoolCrown StreetLiverpoolL69 7ZDUK
| | - Peng Cui
- Department of Chemistry and Materials Innovation FactoryUniversity of LiverpoolCrown StreetLiverpoolL69 7ZDUK
| | - Andrew I. Cooper
- Department of Chemistry and Materials Innovation FactoryUniversity of LiverpoolCrown StreetLiverpoolL69 7ZDUK
| | - Kim E. Jelfs
- Department of ChemistryImperial College LondonMolecular Sciences Research HubWhite City CampusLondonW12 0BZUK
| | - Anna G. Slater
- Department of Chemistry and Materials Innovation FactoryUniversity of LiverpoolCrown StreetLiverpoolL69 7ZDUK
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29
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Zhang L, Jin Y, Tao G, Gong Y, Hu Y, He L, Zhang W. Desymmetrized Vertex Design toward a Molecular Cage with Unusual Topology. Angew Chem Int Ed Engl 2020; 59:20846-20851. [DOI: 10.1002/anie.202007454] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2020] [Revised: 07/08/2020] [Indexed: 01/12/2023]
Affiliation(s)
- Lei Zhang
- College of Chemistry Sichuan University Chengdu 610064 China
- Department of Chemistry University of Colorado Boulder Colorado 80309 USA
| | - Yinghua Jin
- Department of Chemistry University of Colorado Boulder Colorado 80309 USA
| | - Guo‐Hong Tao
- College of Chemistry Sichuan University Chengdu 610064 China
| | - Yu Gong
- Department of Chemistry University of Colorado Boulder Colorado 80309 USA
| | - Yiming Hu
- Department of Chemistry University of Colorado Boulder Colorado 80309 USA
| | - Ling He
- College of Chemistry Sichuan University Chengdu 610064 China
| | - Wei Zhang
- Department of Chemistry University of Colorado Boulder Colorado 80309 USA
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30
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Alexandre P, Zhang W, Rominger F, Elbert SM, Schröder RR, Mastalerz M. A Robust Porous Quinoline Cage: Transformation of a [4+6] Salicylimine Cage by Povarov Cyclization. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202007048] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Pierre‐Emmanuel Alexandre
- Organisch-Chemisches Institut Ruprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 270 69120 Heidelberg Germany
| | - Wen‐Shan Zhang
- Centre for Advanced Materials Ruprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 225 69120 Heidelberg Germany
| | - Frank Rominger
- Organisch-Chemisches Institut Ruprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 270 69120 Heidelberg Germany
| | - Sven M. Elbert
- Organisch-Chemisches Institut Ruprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 270 69120 Heidelberg Germany
- Centre for Advanced Materials Ruprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 225 69120 Heidelberg Germany
| | - Rasmus R. Schröder
- Centre for Advanced Materials Ruprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 225 69120 Heidelberg Germany
| | - Michael Mastalerz
- Organisch-Chemisches Institut Ruprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 270 69120 Heidelberg Germany
- Centre for Advanced Materials Ruprecht-Karls-Universität Heidelberg Im Neuenheimer Feld 225 69120 Heidelberg Germany
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31
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Abet V, Szczypiński FT, Little MA, Santolini V, Jones CD, Evans R, Wilson C, Wu X, Thorne MF, Bennison MJ, Cui P, Cooper AI, Jelfs KE, Slater AG. Inducing Social Self‐Sorting in Organic Cages To Tune The Shape of The Internal Cavity. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202007571] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Valentina Abet
- Department of Chemistry and Materials Innovation FactoryUniversity of Liverpool Crown Street Liverpool L69 7ZD UK
| | - Filip T. Szczypiński
- Department of ChemistryImperial College LondonMolecular Sciences Research Hub White City Campus London W12 0BZ UK
| | - Marc A. Little
- Department of Chemistry and Materials Innovation FactoryUniversity of Liverpool Crown Street Liverpool L69 7ZD UK
| | - Valentina Santolini
- Department of ChemistryImperial College LondonMolecular Sciences Research Hub White City Campus London W12 0BZ UK
| | - Christopher D. Jones
- Department of Chemistry and Materials Innovation FactoryUniversity of Liverpool Crown Street Liverpool L69 7ZD UK
| | - Robert Evans
- Aston Institute of Materials Research, School of Engineering and Applied ScienceAston University Birmingham B4 7ET UK
| | - Craig Wilson
- Department of Chemistry and Materials Innovation FactoryUniversity of Liverpool Crown Street Liverpool L69 7ZD UK
| | - Xiaofeng Wu
- Department of Chemistry and Materials Innovation FactoryUniversity of Liverpool Crown Street Liverpool L69 7ZD UK
| | - Michael F. Thorne
- Department of Chemistry and Materials Innovation FactoryUniversity of Liverpool Crown Street Liverpool L69 7ZD UK
| | - Michael J. Bennison
- Department of Chemistry and Materials Innovation FactoryUniversity of Liverpool Crown Street Liverpool L69 7ZD UK
| | - Peng Cui
- Department of Chemistry and Materials Innovation FactoryUniversity of Liverpool Crown Street Liverpool L69 7ZD UK
| | - Andrew I. Cooper
- Department of Chemistry and Materials Innovation FactoryUniversity of Liverpool Crown Street Liverpool L69 7ZD UK
| | - Kim E. Jelfs
- Department of ChemistryImperial College LondonMolecular Sciences Research Hub White City Campus London W12 0BZ UK
| | - Anna G. Slater
- Department of Chemistry and Materials Innovation FactoryUniversity of Liverpool Crown Street Liverpool L69 7ZD UK
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32
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Kravchenko O, Varava A, Pokorny FT, Devaurs D, Kavraki LE, Kragic D. A Robotics-Inspired Screening Algorithm for Molecular Caging Prediction. J Chem Inf Model 2020; 60:1302-1316. [PMID: 32130862 PMCID: PMC7307881 DOI: 10.1021/acs.jcim.9b00945] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
![]()
We define a molecular caging complex as a pair
of molecules in which one molecule (the “host” or “cage”)
possesses a cavity that can encapsulate the other molecule (the “guest”)
and prevent it from escaping. Molecular caging complexes can be useful
in applications such as molecular shape sorting, drug delivery, and
molecular immobilization in materials science, to name just a few.
However, the design and computational discovery of new caging complexes
is a challenging task, as it is hard to predict whether one molecule
can encapsulate another because their shapes can be quite complex.
In this paper, we propose a computational screening method that predicts
whether a given pair of molecules form a caging complex. Our method
is based on a caging verification algorithm that was designed by our
group for applications in robotic manipulation. We tested our algorithm
on three pairs of molecules that were previously described in a pioneering
work on molecular caging complexes and found that our results are
fully consistent with the previously reported ones. Furthermore, we
performed a screening experiment on a data set consisting of 46 hosts
and four guests and used our algorithm to predict which pairs are
likely to form caging complexes. Our method is computationally efficient
and can be integrated into a screening pipeline to complement experimental
techniques.
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Affiliation(s)
- Oleksandr Kravchenko
- Department of Chemistry, School of Engineering Sciences in Chemistry, Biology and Health (CBH), KTH Royal Institute of Technology, 11428 Stockholm, Sweden
| | - Anastasiia Varava
- Division of Robotics, Perception and Learning (RPL), School of Electrical Engineering and Computer Science (EECS), KTH Royal Institute of Technology, 10044 Stockholm, Sweden
| | - Florian T Pokorny
- Division of Robotics, Perception and Learning (RPL), School of Electrical Engineering and Computer Science (EECS), KTH Royal Institute of Technology, 10044 Stockholm, Sweden
| | - Didier Devaurs
- Univ. Grenoble Alpes, CNRS, Inria, Grenoble INP (Institute of Engineering, Université Grenoble Alpes), LJK, 38000 Grenoble, France
| | - Lydia E Kavraki
- Department of Computer Science, Rice University, Houston, Texas 77005, United States
| | - Danica Kragic
- Division of Robotics, Perception and Learning (RPL), School of Electrical Engineering and Computer Science (EECS), KTH Royal Institute of Technology, 10044 Stockholm, Sweden
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33
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Wei Y, Luo M, Zhang G, Lei J, Xie LH, Huang W. A convenient one-pot nanosynthesis of a C(sp 2)-C(sp 3)-linked 3D grid via an 'A 2 + B 3' approach. Org Biomol Chem 2019; 17:6574-6579. [PMID: 31237308 DOI: 10.1039/c9ob00754g] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
Fluorene-based 3D-grid-FTPA was synthesised with a total yield of 55% via the one-pot formation of six C(sp2)-C(sp3) bonds through a BF3·Et2O-mediated Friedel-Crafts reaction of A2-type bifluorene tertiary alcohol (BIOH) and two B3-type triphenylamines. At the same time, Un-grid-FTPA (2.7%) and 2D-grid-FTPA (5.6%) were obtained as by-products from this synthesis method. In addition, the effect of stereoisomers of BIOH was evaluated to demonstrate that Rac-BIOH is a better A2-type building block to prepare 3D-grid-FTPA in a relatively high yield. Furthermore, 3D-grid-FTPA showed excellent chemical, thermal, and photo-stabilities.
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Affiliation(s)
- Ying Wei
- Centre for Molecular Systems and Organic Devices (CMSOD), Key Laboratory for Organic Electronics and Information Displays & Jiangsu Key Laboratory for Biosensors, Institute of Advanced Materials (IAM), Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM), Nanjing University of Posts & Telecommunications, 9 Wenyuan Road, Nanjing 210023, P.R. China.
| | - Mengcheng Luo
- Centre for Molecular Systems and Organic Devices (CMSOD), Key Laboratory for Organic Electronics and Information Displays & Jiangsu Key Laboratory for Biosensors, Institute of Advanced Materials (IAM), Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM), Nanjing University of Posts & Telecommunications, 9 Wenyuan Road, Nanjing 210023, P.R. China.
| | - Guangwei Zhang
- Centre for Molecular Systems and Organic Devices (CMSOD), Key Laboratory for Organic Electronics and Information Displays & Jiangsu Key Laboratory for Biosensors, Institute of Advanced Materials (IAM), Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM), Nanjing University of Posts & Telecommunications, 9 Wenyuan Road, Nanjing 210023, P.R. China.
| | - Jiaqi Lei
- Centre for Molecular Systems and Organic Devices (CMSOD), Key Laboratory for Organic Electronics and Information Displays & Jiangsu Key Laboratory for Biosensors, Institute of Advanced Materials (IAM), Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM), Nanjing University of Posts & Telecommunications, 9 Wenyuan Road, Nanjing 210023, P.R. China.
| | - Ling-Hai Xie
- Centre for Molecular Systems and Organic Devices (CMSOD), Key Laboratory for Organic Electronics and Information Displays & Jiangsu Key Laboratory for Biosensors, Institute of Advanced Materials (IAM), Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM), Nanjing University of Posts & Telecommunications, 9 Wenyuan Road, Nanjing 210023, P.R. China.
| | - Wei Huang
- Centre for Molecular Systems and Organic Devices (CMSOD), Key Laboratory for Organic Electronics and Information Displays & Jiangsu Key Laboratory for Biosensors, Institute of Advanced Materials (IAM), Jiangsu National Synergetic Innovation Center for Advanced Materials (SICAM), Nanjing University of Posts & Telecommunications, 9 Wenyuan Road, Nanjing 210023, P.R. China. and Shaanxi Institute of Flexible Electronics (SIFE), Northwestern Polytechnical University (NPU), 127 West Youyi Road, Xi'an 710072, Shaanxi, China
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34
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Teng B, Little MA, Hasell T, Chong SY, Jelfs KE, Clowes R, Briggs M, Cooper AI. Synthesis of a Large, Shape-Flexible, Solvatomorphic Porous Organic Cage. CRYSTAL GROWTH & DESIGN 2019; 19:3647-3651. [PMID: 31303868 PMCID: PMC6614879 DOI: 10.1021/acs.cgd.8b01761] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/26/2018] [Revised: 02/22/2019] [Indexed: 06/10/2023]
Abstract
Porous organic cages have emerged over the last 10 years as a subclass of functional microporous materials. However, among all of the organic cages reported, large multicomponent organic cages with 20 components or more are still rare. Here, we present an [8 + 12] porous organic imine cage, CC20, which has an apparent surface area up to 1752 m2 g-1, depending on the crystallization and activation conditions. The cage is solvatomorphic and displays distinct geometrical cage structures, caused by crystal-packing effects, in its crystal structures. This indicates that larger cages can display a certain range of shape flexibility in the solid state, while remaining shape persistent and porous.
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Affiliation(s)
- Baiyang Teng
- Department
of Chemistry and Materials Innovation Factory, University of Liverpool, Liverpool L69 7ZD, U.K.
| | - Marc A. Little
- Department
of Chemistry and Materials Innovation Factory, University of Liverpool, Liverpool L69 7ZD, U.K.
| | - Tom Hasell
- Department
of Chemistry and Materials Innovation Factory, University of Liverpool, Liverpool L69 7ZD, U.K.
| | - Samantha Y. Chong
- Department
of Chemistry and Materials Innovation Factory, University of Liverpool, Liverpool L69 7ZD, U.K.
| | - Kim E. Jelfs
- Department
of Chemistry, Imperial College London, Molecular Sciences Research Hub, White City Campus, Wood Lane, London W12
0BZ, U.K.
| | - Rob Clowes
- Department
of Chemistry and Materials Innovation Factory, University of Liverpool, Liverpool L69 7ZD, U.K.
| | - Michael
E. Briggs
- Department
of Chemistry and Materials Innovation Factory, University of Liverpool, Liverpool L69 7ZD, U.K.
| | - Andrew I. Cooper
- Department
of Chemistry and Materials Innovation Factory, University of Liverpool, Liverpool L69 7ZD, U.K.
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35
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Schaly A, Meyer M, Chambron, J, Jean M, Vanthuyne N, Aubert E, Espinosa E, Zorn N, Leize‐Wagner E. The Chemo‐ and Stereoselective Formation of Pallado‐ and Platinocryptophanes. Eur J Inorg Chem 2019. [DOI: 10.1002/ejic.201900230] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Astrid Schaly
- Institut de Chimie Moléculaire de l′Université de Bourgogne (ICMUB) UMR 6302 CNRS Université Bourgogne Franche‐Comté avenue A. Savary, 21078 Dijon cedex France
| | - Michel Meyer
- Institut de Chimie Moléculaire de l′Université de Bourgogne (ICMUB) UMR 6302 CNRS Université Bourgogne Franche‐Comté avenue A. Savary, 21078 Dijon cedex France
| | - Jean‐Claude Chambron,
- Institut de Chimie Moléculaire de l′Université de Bourgogne (ICMUB) UMR 6302 CNRS Université Bourgogne Franche‐Comté avenue A. Savary, 21078 Dijon cedex France
- Institut de Chimie de Strasbourg UMR 7177 CNRS Université de Strasbourg 67000 Strasbourg France
| | - Marion Jean
- Aix‐Marseille Université CNRS, Centrale Marseille iSm2 13397 Marseille France
| | - Nicolas Vanthuyne
- Aix‐Marseille Université CNRS, Centrale Marseille iSm2 13397 Marseille France
| | - Emmanuel Aubert
- CRM2 UMR UL‐CNRS 7036 Université de Lorraine 54506 Vandœuvre‐lès‐Nancy France
| | - Enrique Espinosa
- CRM2 UMR UL‐CNRS 7036 Université de Lorraine 54506 Vandœuvre‐lès‐Nancy France
| | - Nathalie Zorn
- CMC, UMR 7140 CNRS Université de Strasbourg 67000 Strasbourg France
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36
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Kołodziejski M, Stefankiewicz AR, Lehn JM. Dynamic polyimine macrobicyclic cryptands - self-sorting with component selection. Chem Sci 2018; 10:1836-1843. [PMID: 30842852 PMCID: PMC6369437 DOI: 10.1039/c8sc04598d] [Citation(s) in RCA: 52] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2018] [Accepted: 12/06/2018] [Indexed: 01/06/2023] Open
Abstract
Self-assembling macrobicyclic cryptand-type organic cages display remarkable self-sorting behavior with efficient component selection.
Self-assembling macrobicyclic cryptand-type organic cages display remarkable self-sorting behavior with efficient component selection. Making use of the dynamic covalent chemistry approach, eight different cages were synthesized by condensation of tris(2-aminopropyl)amine with structurally different dialdehydes. A series of self-sorting experiments were first carried out on simple dynamic covalent libraries. They reveal the influence of different structural features of the aldehyde components on the condensation with two triamine capping units. Subsequently, self-sorting experiments were performed on more complex systems involving several dialdehyde building blocks. Altogether, the results obtained describe the effect of the presence of a heteroatom, of electrostatic interactions, of delocalization and of the flexibility/stiffness of the propensity of a component to undergo formation of a macrobicyclic cage. In the presence of a catalytic amount of acid, the macrobicyclic structure undergoes dynamic component exchange.
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Affiliation(s)
- Michał Kołodziejski
- Laboratory of Supramolecular Chemistry , Institut de Science et d'Ingénierie Supramoléculaires (ISIS) , UMR 7006 , CNRS , Université de Strasbourg , 8 allée Gaspard Monge , 67000 Strasbourg , France . .,Faculty of Chemistry , Adam Mickiewicz University , Umultowska 89b , 61-614 Poznań , Poland . .,Center for Advanced Technologies , Adam Mickiewicz University , Umultowska 89c , 61-614 Poznań , Poland
| | - Artur R Stefankiewicz
- Faculty of Chemistry , Adam Mickiewicz University , Umultowska 89b , 61-614 Poznań , Poland . .,Center for Advanced Technologies , Adam Mickiewicz University , Umultowska 89c , 61-614 Poznań , Poland
| | - Jean-Marie Lehn
- Laboratory of Supramolecular Chemistry , Institut de Science et d'Ingénierie Supramoléculaires (ISIS) , UMR 7006 , CNRS , Université de Strasbourg , 8 allée Gaspard Monge , 67000 Strasbourg , France .
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37
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Nihei M, Ida H, Nibe T, Moeljadi AMP, Trinh QT, Hirao H, Ishizaki M, Kurihara M, Shiga T, Oshio H. Ferrihydrite Particle Encapsulated within a Molecular Organic Cage. J Am Chem Soc 2018; 140:17753-17759. [DOI: 10.1021/jacs.8b10957] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- Masayuki Nihei
- Faculty of Pure and Applied Sciences, Department of Chemistry, University of Tsukuba, Tennodai 1-1-1, Tsukuba 305-8571, Japan
| | - Hiromichi Ida
- Faculty of Pure and Applied Sciences, Department of Chemistry, University of Tsukuba, Tennodai 1-1-1, Tsukuba 305-8571, Japan
| | - Takayuki Nibe
- Faculty of Pure and Applied Sciences, Department of Chemistry, University of Tsukuba, Tennodai 1-1-1, Tsukuba 305-8571, Japan
| | | | - Quang Thang Trinh
- Cambridge Centre for Advanced Research and Education in Singapore, Nanyang Technological University, 1 Create Way, Singapore 138602
| | - Hajime Hirao
- Department of Chemistry, City University of Hong Kong, Tat Chee Avenue, Kowloon, Hong Kong, People’s Republic of China
| | - Manabu Ishizaki
- Department of Material and Biological Chemistry, Faculty of Science, Yamagata University, 1-4-12 Kojirakawa-machi, Yamagata 990-8560, Japan
| | - Masato Kurihara
- Department of Material and Biological Chemistry, Faculty of Science, Yamagata University, 1-4-12 Kojirakawa-machi, Yamagata 990-8560, Japan
| | - Takuya Shiga
- Faculty of Pure and Applied Sciences, Department of Chemistry, University of Tsukuba, Tennodai 1-1-1, Tsukuba 305-8571, Japan
| | - Hiroki Oshio
- Faculty of Pure and Applied Sciences, Department of Chemistry, University of Tsukuba, Tennodai 1-1-1, Tsukuba 305-8571, Japan
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38
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Jiao T, Wu G, Chen L, Wang CY, Li H. Precursor Control over the Self-Assembly of Organic Cages via Imine Condensation. J Org Chem 2018; 83:12404-12410. [DOI: 10.1021/acs.joc.8b01421] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Tianyu Jiao
- Department of Chemistry, Zhejiang University, Hangzhou 310027, P. R. China
| | - Guangcheng Wu
- Department of Chemistry, Zhejiang University, Hangzhou 310027, P. R. China
| | - Liang Chen
- Department of Chemistry, Zhejiang University, Hangzhou 310027, P. R. China
| | - Cai-Yun Wang
- Department of Chemistry, Zhejiang University, Hangzhou 310027, P. R. China
| | - Hao Li
- Department of Chemistry, Zhejiang University, Hangzhou 310027, P. R. China
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39
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Prusinowska N, Bardziński M, Janiak A, Skowronek P, Kwit M. Sterically Crowded Trianglimines-Synthesis, Structure, Solid-State Self-Assembly, and Unexpected Chiroptical Properties. Chem Asian J 2018; 13:2691-2699. [PMID: 29953724 DOI: 10.1002/asia.201800938] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2018] [Indexed: 11/06/2022]
Abstract
The chiral, triangular-shape hexaimine macrocycles (trianglimines), bearing bulky alkynyl or aryl substituents were synthesized and studied by means of experimental and theoretical methods. The macrocyclization reactions are driven by the extraordinary stability of the trianglimine ring and provided products with high yields. Electrostatic repulsion between imine nitrogen atoms and the substituents forced an anti conformation of the aromatic linkers. Although the DFT-optimized structure of 7 is D3 symmetrical, in the crystal, the macrocycle adopts a bowl-like molecular shape. The macrocycle self-assembles into tail-to-tail dimers by mutual interdigitation of aromatic moieties. In contrast, macrocycle 8 adopts a rigid pillararene-like conformation. The nature of the substituent significantly affects the electronic properties of the linker. As a result, unexpectedly high exciton Cotton effects are observed in the electronic circular dichroism (ECD) spectra. The origin of these effects was subject of an in-depth study.
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Affiliation(s)
- Natalia Prusinowska
- Department of Chemistry, Adam Mickiewicz University, Umultowska 89B, 61 614, Poznan, Poland.,Centre for Advanced Technologies AMU, Umultowska 89C, 61 614, Poznań, Poland
| | - Mateusz Bardziński
- Department of Chemistry, Adam Mickiewicz University, Umultowska 89B, 61 614, Poznan, Poland
| | - Agnieszka Janiak
- Department of Chemistry, Adam Mickiewicz University, Umultowska 89B, 61 614, Poznan, Poland
| | - Paweł Skowronek
- Department of Chemistry, Adam Mickiewicz University, Umultowska 89B, 61 614, Poznan, Poland
| | - Marcin Kwit
- Department of Chemistry, Adam Mickiewicz University, Umultowska 89B, 61 614, Poznan, Poland.,Centre for Advanced Technologies AMU, Umultowska 89C, 61 614, Poznań, Poland
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40
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Kwit M, Grajewski J, Skowronek P, Zgorzelak M, Gawroński J. One‐Step Construction of the Shape Persistent, Chiral But Symmetrical Polyimine Macrocycles. CHEM REC 2018; 19:213-237. [DOI: 10.1002/tcr.201800052] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2018] [Accepted: 06/29/2018] [Indexed: 01/22/2023]
Affiliation(s)
- Marcin Kwit
- Department of ChemistryAdam Mickiewicz University Umultowska 89B 61 614 Poznań Poland
- Centre for Advanced TechnologiesA. Mickiewicz University Umultowska 89C 61 614 Poznań Poland
| | - Jakub Grajewski
- Department of ChemistryAdam Mickiewicz University Umultowska 89B 61 614 Poznań Poland
| | - Paweł Skowronek
- Department of ChemistryAdam Mickiewicz University Umultowska 89B 61 614 Poznań Poland
| | - Mikołaj Zgorzelak
- Department of ChemistryAdam Mickiewicz University Umultowska 89B 61 614 Poznań Poland
| | - Jacek Gawroński
- Department of ChemistryAdam Mickiewicz University Umultowska 89B 61 614 Poznań Poland
- Centre for Advanced TechnologiesA. Mickiewicz University Umultowska 89C 61 614 Poznań Poland
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41
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Szymkowiak J, Warżajtis B, Rychlewska U, Kwit M. One-step Access to Resorcinsalens-Solvent-Dependent Synthesis, Tautomerism, Self-sorting and Supramolecular Architectures of Chiral Polyimine Analogues of Resorcinarene. Chemistry 2018; 24:6041-6046. [PMID: 29486101 DOI: 10.1002/chem.201800316] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2018] [Revised: 02/23/2018] [Indexed: 11/08/2022]
Abstract
Substituted 2,4- and 4,6-dihydroxyisophthalaldehydes were condensed with optically pure and racemic trans-1,2-diaminocyclohexane to form resorcinarene-like polyimine macrocycles (resorcinsalens), the structure and stoichiometry of which were controlled by the choice of the reaction medium. Particularly, the cyclocondensation reactions were driven by the solubility, tautomerization, or by social self-sorting. The resorcinsalens crystallized as inclusion compounds, in which the guest molecules were situated either in channels or in voids. In the highly hydrated crystals of one of the [2+2] macrocycles and chloroform-solvated crystals of a [4+4] product the channels were interconnected, as in zeolites, enabling possible migration of loosely bound solvent molecules in three dimensions. The association mode depended on the structural modification of the host molecule and the type of included solvent molecule(s).
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Affiliation(s)
- Joanna Szymkowiak
- Department of Chemistry, Adam Mickiewicz University, Umultowska 89B, 61 614, Poznan, Poland.,Centre for Advanced Technologies, Adam Mickiewicz University, Umultowska 89C, 61 614, Poznan, Poland
| | - Beata Warżajtis
- Department of Chemistry, Adam Mickiewicz University, Umultowska 89B, 61 614, Poznan, Poland
| | - Urszula Rychlewska
- Department of Chemistry, Adam Mickiewicz University, Umultowska 89B, 61 614, Poznan, Poland
| | - Marcin Kwit
- Department of Chemistry, Adam Mickiewicz University, Umultowska 89B, 61 614, Poznan, Poland.,Centre for Advanced Technologies, Adam Mickiewicz University, Umultowska 89C, 61 614, Poznan, Poland
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42
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Beuerle F, Gole B. Covalent Organic Frameworks and Cage Compounds: Design and Applications of Polymeric and Discrete Organic Scaffolds. Angew Chem Int Ed Engl 2018; 57:4850-4878. [DOI: 10.1002/anie.201710190] [Citation(s) in RCA: 313] [Impact Index Per Article: 52.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2017] [Indexed: 01/11/2023]
Affiliation(s)
- Florian Beuerle
- Universität Würzburg; Institut für Organische Chemie; Am Hubland 97074 Würzburg Germany
- Center for Nanosystems Chemistry (CNC) &; Bavarian Polymer Institute (BPI); Theodor-Boveri-Weg 97074 Würzburg Germany
| | - Bappaditya Gole
- Universität Würzburg; Institut für Organische Chemie; Am Hubland 97074 Würzburg Germany
- Center for Nanosystems Chemistry (CNC) &; Bavarian Polymer Institute (BPI); Theodor-Boveri-Weg 97074 Würzburg Germany
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43
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Beuerle F, Gole B. Kovalente organische Netzwerke und Käfigverbindungen: Design und Anwendungen von polymeren und diskreten organischen Gerüsten. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201710190] [Citation(s) in RCA: 92] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Florian Beuerle
- Universität Würzburg; Institut für Organische Chemie; Am Hubland 97074 Würzburg Deutschland
- Zentrum für Nanosystemchemie (CNC) &; Bayerisches Polymerinstitut (BPI); Theodor-Boveri-Weg 97074 Würzburg Deutschland
| | - Bappaditya Gole
- Universität Würzburg; Institut für Organische Chemie; Am Hubland 97074 Würzburg Deutschland
- Zentrum für Nanosystemchemie (CNC) &; Bayerisches Polymerinstitut (BPI); Theodor-Boveri-Weg 97074 Würzburg Deutschland
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44
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Janiak A, Kwit M, Barbour LJ. An unexpected relationship between solvent inclusion and gas sorption properties of chiral calixsalen solids. Supramol Chem 2018. [DOI: 10.1080/10610278.2018.1427865] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Agnieszka Janiak
- Department of Chemistry, Adam Mickiewicz University, Poznan, Poland
- Department of Chemistry and Polymer Science, Stellenbosch University, Stellenbosch, South Africa
| | - Marcin Kwit
- Department of Chemistry, Adam Mickiewicz University, Poznan, Poland
- Wielkopolska Center for Advanced Technologies (WCAT), Poznan, Poland
| | - Leonard J. Barbour
- Department of Chemistry and Polymer Science, Stellenbosch University, Stellenbosch, South Africa
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45
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Lauer JC, Zhang WS, Rominger F, Schröder RR, Mastalerz M. Shape-Persistent [4+4] Imine Cages with a Truncated Tetrahedral Geometry. Chemistry 2018; 24:1816-1820. [PMID: 29272048 PMCID: PMC5838406 DOI: 10.1002/chem.201705713] [Citation(s) in RCA: 47] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2017] [Indexed: 12/29/2022]
Abstract
The synthesis of shape-persistent organic cage compounds is often based on the usage of multiple dynamic covalent bond formation (such as imines) of readily available precursors. By careful choice of the precursors geometry, the geometry and size of the resulting cage can be accurately designed and indeed a number of different geometries and sizes have been realized to date. Despite of this fact, little is known about the precursors conformational rigidity and steric preorganization of reacting functional groups on the outcome of the reaction. Herein, the influence of conformational rigidity in the precursors on the formation of a [4+4] imine cage with truncated tetrahedral geometry is discussed.
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Affiliation(s)
- Jochen C Lauer
- Organisch-Chemisches Institut, Ruprecht-Karls-Universität Heidelberg, Im Neuenheimer Feld 270, 69120, Heidelberg, Germany
| | - Wen-Shan Zhang
- Centre for Advanced Materials, Ruprecht-Karls-Universität Heidelberg, Im Neuenheimer Feld 225, 69120, Heidelberg, Germany
| | - Frank Rominger
- Organisch-Chemisches Institut, Ruprecht-Karls-Universität Heidelberg, Im Neuenheimer Feld 270, 69120, Heidelberg, Germany
| | - Rasmus R Schröder
- Centre for Advanced Materials, Ruprecht-Karls-Universität Heidelberg, Im Neuenheimer Feld 225, 69120, Heidelberg, Germany
| | - Michael Mastalerz
- Organisch-Chemisches Institut, Ruprecht-Karls-Universität Heidelberg, Im Neuenheimer Feld 270, 69120, Heidelberg, Germany
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46
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Szymkowiak J, Warżajtis B, Rychlewska U, Kwit M. Consistent supramolecular assembly arising from a mixture of components – self-sorting and solid solutions of chiral oxygenated trianglimines. CrystEngComm 2018. [DOI: 10.1039/c8ce01044g] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
The formation of trianglimines and their aggregates is stereoselective, and uniformly chiral macrocycles differing in chemical composition crystallize as solid solutions.
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Affiliation(s)
- Joanna Szymkowiak
- Department of Chemistry
- Adam Mickiewicz University
- 61 614 Poznań
- Poland
- Centre for Advanced Technologies
| | - Beata Warżajtis
- Department of Chemistry
- Adam Mickiewicz University
- 61 614 Poznań
- Poland
| | | | - Marcin Kwit
- Department of Chemistry
- Adam Mickiewicz University
- 61 614 Poznań
- Poland
- Centre for Advanced Technologies
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47
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Chen K, Wang Y, Yao J, Li H. Equilibrium in Protic Ionic Liquids: The Degree of Proton Transfer and Thermodynamic Properties. J Phys Chem B 2017; 122:309-315. [DOI: 10.1021/acs.jpcb.7b10671] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Kaizhou Chen
- Department of Chemistry, ZJU-NHU United R&D Center and ‡State Key Laboratory of Chemical Engineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, P. R. China
| | - Yongtao Wang
- Department of Chemistry, ZJU-NHU United R&D Center and ‡State Key Laboratory of Chemical Engineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, P. R. China
| | - Jia Yao
- Department of Chemistry, ZJU-NHU United R&D Center and ‡State Key Laboratory of Chemical Engineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, P. R. China
| | - Haoran Li
- Department of Chemistry, ZJU-NHU United R&D Center and ‡State Key Laboratory of Chemical Engineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, P. R. China
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48
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Galán A, Escudero-Adán EC, Ballester P. Template-directed self-assembly of dynamic covalent capsules with polar interiors. Chem Sci 2017; 8:7746-7750. [PMID: 29568438 PMCID: PMC5853267 DOI: 10.1039/c7sc03731g] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2017] [Accepted: 09/26/2017] [Indexed: 11/21/2022] Open
Abstract
Chiral polyimine molecular capsules with polar interiors have been prepared through template covalent dynamic self-assembly. An aryl-extended tetraaldehyde calix[4]pyrrole scaffold was condensed with suitable diamines as linkers using templates for efficient self-assembly. The capsular complexes were characterized in solution, gas phase and the solid-state. Unprecedented transfer of asymmetry was observed from a chiral diamine linker to the resulting supramolecular capsular assembly.
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Affiliation(s)
- Albano Galán
- Institute of Chemical Research of Catalonia (ICIQ) , The Barcelona Institute of Science and Technology (BIST) , Avgda. Països Catalans 16 , 43007 Tarragona , Spain .
| | | | - Pablo Ballester
- Institute of Chemical Research of Catalonia (ICIQ) , The Barcelona Institute of Science and Technology (BIST) , Avgda. Països Catalans 16 , 43007 Tarragona , Spain .
- Catalan Institution for Research and Advanced Studies (ICREA) , Passeig Lluís Companys 23 , 08010 Barcelona , Spain
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49
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Markiewicz G, Jenczak A, Kołodziejski M, Holstein JJ, Sanders JKM, Stefankiewicz AR. Selective C 70 encapsulation by a robust octameric nanospheroid held together by 48 cooperative hydrogen bonds. Nat Commun 2017; 8:15109. [PMID: 28488697 PMCID: PMC5436139 DOI: 10.1038/ncomms15109] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2016] [Accepted: 03/01/2017] [Indexed: 12/21/2022] Open
Abstract
Self-assembly of multiple building blocks via hydrogen bonds into well-defined nanoconstructs with selective binding function remains one of the foremost challenges in supramolecular chemistry. Here, we report the discovery of a enantiopure nanocapsule that is formed through the self-assembly of eight amino acid functionalised molecules in nonpolar solvents through 48 hydrogen bonds. The nanocapsule is remarkably robust, being stable at low and high temperatures, and in the presence of base, presumably due to the co-operative geometry of the hydrogen bonding motif. Thanks to small pore sizes, large internal cavity and sufficient dynamicity, the nanocapsule is able to recognize and encapsulate large aromatic guests such as fullerenes C60 and C70. The structural and electronic complementary between the host and C70 leads to its preferential and selective binding from a mixture of C60 and C70. Individual hydrogen bonds are weak, so self-assembling multiple components via hydrogen bonding is a significant challenge. Here the authors report a robust, enantiopure nanocapsule held together by 48 cooperative hydrogen bonds, and use it for the selective binding of C70.
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Affiliation(s)
- Grzegorz Markiewicz
- Laboratory of Functional Nanostructures, Faculty of Chemistry, Adam Mickiewicz University in Poznań, Umultowska 89b, 61-614 Poznań, Poland.,Laboratory of Functional Nanostructures, Centre for Advanced Technologies, Adam Mickiewicz University, Umultowska 89c, 61-614 Poznań, Poland
| | - Anna Jenczak
- Laboratory of Functional Nanostructures, Faculty of Chemistry, Adam Mickiewicz University in Poznań, Umultowska 89b, 61-614 Poznań, Poland.,Laboratory of Functional Nanostructures, Centre for Advanced Technologies, Adam Mickiewicz University, Umultowska 89c, 61-614 Poznań, Poland
| | - Michał Kołodziejski
- Laboratory of Functional Nanostructures, Faculty of Chemistry, Adam Mickiewicz University in Poznań, Umultowska 89b, 61-614 Poznań, Poland.,Laboratory of Functional Nanostructures, Centre for Advanced Technologies, Adam Mickiewicz University, Umultowska 89c, 61-614 Poznań, Poland
| | - Julian J Holstein
- Faculty of Chemistry and Chemical Biology TU Dortmund, Otto-Hahn-Strasse 6, D-44227 Dortmund, Germany
| | - Jeremy K M Sanders
- Department of Chemistry, University Chemical Laboratory, Lensfield Road, Cambridge CB2 1EW, UK
| | - Artur R Stefankiewicz
- Laboratory of Functional Nanostructures, Faculty of Chemistry, Adam Mickiewicz University in Poznań, Umultowska 89b, 61-614 Poznań, Poland.,Laboratory of Functional Nanostructures, Centre for Advanced Technologies, Adam Mickiewicz University, Umultowska 89c, 61-614 Poznań, Poland
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50
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Santolini V, Miklitz M, Berardo E, Jelfs KE. Topological landscapes of porous organic cages. NANOSCALE 2017; 9:5280-5298. [PMID: 28397915 DOI: 10.1039/c7nr00703e] [Citation(s) in RCA: 69] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
We define a nomenclature for the classification of porous organic cage molecules, enumerating the 20 most probable topologies, 12 of which have been synthetically realised to date. We then discuss the computational challenges encountered when trying to predict the most likely topological outcomes from dynamic covalent chemistry (DCC) reactions of organic building blocks. This allows us to explore the extent to which comparing the internal energies of possible reaction outcomes is successful in predicting the topology for a series of 10 different building block combinations.
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Affiliation(s)
- Valentina Santolini
- Department of Chemistry, Imperial College London, South Kensington, London, SW7 2AZ, UK. www.twitter.com/JelfsChem
| | - Marcin Miklitz
- Department of Chemistry, Imperial College London, South Kensington, London, SW7 2AZ, UK. www.twitter.com/JelfsChem
| | - Enrico Berardo
- Department of Chemistry, Imperial College London, South Kensington, London, SW7 2AZ, UK. www.twitter.com/JelfsChem
| | - Kim E Jelfs
- Department of Chemistry, Imperial College London, South Kensington, London, SW7 2AZ, UK. www.twitter.com/JelfsChem
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