Measuring binding kinetics of aromatic thiolated molecules with nanoparticles via surface-enhanced Raman spectroscopy

A Review on Perception of Binding Kinetics in Affinity Biosensors: Challenges and Opportunities

There are challenges associated with design and development of affinity biosensors due to the complicated multiphysics nature of the system. Understanding the binding interaction between target molecules and immobilized receptors and its kinetics is a crucial step to develop robust and reliable biosensor technologies. Evaluation of binding kinetics in biosensors becomes more important and challenging for clinical samples with a complex matrix. Despite drastic advancements in biosensor technologies, having a practical perception of the binding kinetics has remained a critical bottleneck due to limited fundamental understanding. This Review aims to provide a comprehensive discussion on concepts and advances developed so far for the perception of binding kinetics in affinity biosensors. Here, modeling approaches and measurement techniques are presented to characterize the binding interactions in biosensor technologies, while the effect of fouling and secondary factors in the binding interactions will be discussed in the concept of kinetics. This Review will investigate the existing research gaps and potential opportunities in the perception of binding kinetics and challenges to develop robust and reliable biosensors.

Controlling chemical interface damping by removing aromatic monothiol and dithiol groups from gold nanorods using sodium borohydride solution

Chemical interface damping (CID) in gold nanorods (AuNRs) significantly influences their optical properties due to the direct transfer of hot electrons from the AuNRs to adsorbed molecules. Despite ongoing research on CID, reversible tuning of CID at the single particle level remains a challenging task. In this study, we investigated the adsorption and removal of thiol-functionalized aromatic molecules, specifically thiophenol (TP) and benzene-1,2-dithiol (BDT), using sodium borohydride (NaBH4) solution as a reagent, with confirmation through surface-enhanced Raman scattering (SERS) measurements. We further examined the effect of NaBH4 solution pH, immersion time in solution, and the number of thiol groups in the adsorbate (TP and BDT) on removal efficiency from the AuNR surfaces. Additionally, we extended this approach to directly control CID in single AuNRs via the adsorption and desorption of TP and BDT molecules under dark-field microscopy and spectroscopy. Therefore, this study provides insights into the removal of aromatic thiol molecules using NaBH4, as well as the direct control of CID in individual AuNRs.

Shape-Induced Variations in Aromatic Thiols Adsorption on Gold Nanoparticle: A Novel Method for Accurate Evaluation of Adsorbed Molecules

Nonspherical gold nanoparticles (GNPs) are increasingly used to enhance sensitivity and selectivity in analytical methods such as surface-enhanced Raman spectroscopy (SERS) for detecting trace biomarkers. However, there is limited research on the adsorption properties of aromatic thiols onto gold nanoparticles of different morphologies, where surface curvature varies significantly at the molecular level. In this study, we investigated the adsorption kinetics of 4-mercaptobenzoic acid, an aromatic molecule, on GNPs with different shapes using SERS. Our findings revealed significant differences in the adsorption behavior and binding site preferences of aromatic thiols on GNPs with distinct morphologies. While thiol molecules consider any surface site on nanospheres equally appealing, nanostars exhibit variations in curvature and surface energy, leading to initial binding with further repositioning from the tips of the nanostar after plasmon activation. To address these differences, we proposed a universal method to evaluate the quantity of tightly bound adsorbed molecules on GNPs independently of the particle size, shape, or concentration.

Dual Function of 4-Aminothiophene in Surface-Enhanced Raman Scattering Application as an Internal Standard and Adsorbent for Controlling Au Nanocrystal Morphology

The sensitivity and quantitative accuracy of surface-enhanced Raman scattering (SERS) are the main factors that restrict its application. Here, novel Au nanoscale convex polyhedrons (Au NCPs) were designed and fabricated to solve these problems via an embedded standard, including eight pods and six small protrusions. Spherical Au seeds regrew into different sizes of Au NCPs with a face-centered cubic structure. This morphology is due to the dual mechanism of the 4-aminothiophene (4-ATP) molecule that serves as an internal standard and a surface ligand regulator combined with the regulatory role of hexadecyl trimethyl ammonium chloride. The results show that Au NCPs were enclosed by high-index {12 9 1} facets, which greatly improved the local plasma resonance and reduced the lowest SERS detectable concentration of pyrene in standard seawater to 0.5 nM. An effective reference was produced by embedding 4-ATP with a relative standard deviation value less than 2.97% (in the same batch) and 3.92% (between different batches). Our research offers a new strategy for morphological regulation of metal nanocrystals, which is useful for the preparation of highly sensitive SERS substrates and trace analysis.

Solution NMR methods for structural and thermodynamic investigation of nanoparticle adsorption equilibria

Characterization of dynamic processes occurring at the nanoparticle (NP) surface is crucial for developing new and more efficient NP catalysts and materials. Thus, a vast amount of research has been dedicated to developing techniques to characterize sorption equilibria. Over recent years, solution NMR spectroscopy has emerged as a preferred tool for investigating ligand-NP interactions. Indeed, due to its ability to probe exchange dynamics over a wide range of timescales with atomic resolution, solution NMR can provide structural, kinetic, and thermodynamic information on sorption equilibria involving multiple adsorbed species and intermediate states. In this contribution, we review solution NMR methods for characterizing ligand-NP interactions, and provide examples of practical applications using these methods as standalone techniques. In addition, we illustrate how the integrated analysis of several NMR datasets was employed to elucidate the role played by support-substrate interactions in mediating the phenol hydrogenation reaction catalyzed by ceria-supported Pd nanoparticles.

Photothermal Structural Dynamics of Au Nanofurnace for In Situ Enhancement in Desorption and Ionization

Fundamental properties of nanostructured substrates govern the performance of laser desorption/ionization mass spectrometry (LDI-MS); however, limited studies have elucidated the desorption/ionization mechanism based on the physicochemical properties of substrates. Herein, the enhancement in desorption/ionization is investigated using a hybrid matrix of Au nanoisland-functionalized ZnO nanotubes (AuNI-ZNTs). The underlying origin is explored in terms of the photo-electronic and -thermal properties of the matrix. This is the first study to report the effect of laser-induced surface restructuring/melting phenomenon on the LDI-MS performance. AuNI plays a central role as a photothermal nanofurnace, which facilitates the internal energy transfer from the AuNI to the adsorbed analytes by reconstruction in the structurally dynamic AuNI and therefore favors the desorption process. Moreover, piezoelectricity is driven in situ in the AuNI-ZNT hybrid, which modulates the overall band structure and thereby promotes the ionization process. Ultimately, high LDI-MS performance is demonstrated by analyzing small metabolites of fatty acids and monosaccharides, which are challenged to be detected in conventional LDI-MS. This study emphasizing the understanding of matrix properties can provide insights into the design and development of a novel nanomaterial as an efficient LDI matrix. Furthermore, the developed hybrid matrix can overcome the major hurdles existing in conventional LDI-MS.

Toward the Development of Ultrasensitive Detectors for Environmental Applications: A Kinetic Study of Cr(III) Monitoring in Water Using EDTA and SERS Techniques

We report for the first time kinetic studies on chromium(III) detection in aqueous solution using citrate-capped silver nanoparticles (AgNPs) and the surface-enhanced Raman spectroscopy (SERS) technique. Moreover, we have shown an important effect of adding ethylenediaminetetraacetic acid (EDTA) on the enhancement and the stability of the Raman signal. The origin of the SERS signal was attributed to the coordination of Cr(III) by citrate/EDTA molecules and the formation of hot spots on aggregated AgNPs. Depending on the mixing method of Cr(III) and EDTA with AgNPs, the temporal SERS spectral features reveal a Prout-Tompkins or a Langmuir kinetic detection model. The UV-visible data, the temporal response of the Raman signal, and the scanning electron microscopy analysis have allowed us to elucidate the mechanism of Cr(III) detection. We observed that mixing simultaneously Cr(III), AgNPs, and EDTA leads to the most stable and intense time-dependent SERS signal. The obtained results should open the way to perform kinetic studies on different host-guest interactions in solution using the SERS technique.

Real-Time Monitoring of Ligand Exchange Kinetics on Gold Nanoparticle Surfaces Enabled by Hot Spot-Normalized Surface-Enhanced Raman Scattering

Nanoparticle surface coatings dictate their fate, transport, and bioavailability. We used a gold nanoparticle-bacterial cellulose substrate and "hot spot"-normalized surface-enhanced Raman scattering (HSNSERS) to achieve in situ and real-time monitoring of ligand exchange reactions on the gold surface. This approach enables semiquantitative determination of citrate surface coverage. Following exposure of the citrate-coated nanoparticles to a suite of guest ligands (thiolates, amines, carboxylates, inorganic ions, and proteins), the guest ligand signal exhibited first-order growth kinetics, while the desorption mediated decay of the citrate signal followed a first-order model. Guest ligand functional group chemistry dictated the kinetics of citrate desorption, while the guest ligand concentration played only a minor role. Thiolates and BSA were more efficient at ligand exchange than amine-containing chemicals, carboxylate-containing chemicals, and inorganic salts due to their higher binding energies with the AuNP surface. Amine-containing molecules overcoated rather than displaced the citrate layer via electrostatic interaction. Citrate exhibited low resistance to replacement at high surface coverages, but higher resistance at lower coverage, thus suggesting a transformation of the citrate-binding mode during desorption. High resistance to replacement in streamwater suggests that the role of surface-adsorbed citrate in nanomaterial fate and transport must be better understood.

How Fast Can Thiols Bind to the Gold Nanoparticle Surface?

Kinetics of gold nanoparticle surface modification with thiols can take more than one hour for completion. 7-mercapto-4-methylcoumarin can be used to follow the process by fluorescence spectroscopy and serves as a convenient molecular probe to determine relative kinetics. SERS studies with aromatic thiols further support the slow surface modification kinetics observed by fluorescence spectroscopy. The formation of thiolate bonds is a relatively slow process; we recommend one to two hour wait for thiol binding to be essentially complete, while for disulfides, overnight incubation is suggested.

Surface-Enhanced Raman Spectroscopy of Carbon Nanomembranes from Aromatic Self-Assembled Monolayers

Surface-enhanced Raman scattering spectroscopy (SERS) was employed to investigate the formation of self-assembled monolayers (SAMs) of biphenylthiol, 4'-nitro-1,1'-biphenyl-4-thiol, and p-terphenylthiol on Au surfaces and their structural transformations into carbon nanomembranes (CNMs) induced by electron irradiation. The high sensitivity of SERS allows us to identify two types of Raman scattering in electron-irradiated SAMs: (1) Raman-active sites exhibit similar bands as those of pristine SAMs in the fingerprint spectral region, but with indications of an amorphization process and (2) Raman-inactive sites show almost no Raman-scattering signals, except a very weak and broad D band, indicating a lack of structural order but for the presence of graphitic domains. Statistical analysis showed that the ratio of the number of Raman-active sites to the total number of measurement sites decreases exponentially with increasing the electron irradiation dose. The maximum degree of cross-linking ranged from 97 to 99% for the three SAMs. Proof-of-concept experiments were conducted to demonstrate potential applications of Raman-inactive CNMs as a supporting membrane for Raman analysis.

Nanoscale Surface Curvature Effects on Ligand-Nanoparticle Interactions: A Plasmon-Enhanced Spectroscopic Study of Thiolated Ligand Adsorption, Desorption, and Exchange on Gold Nanoparticles

The interfacial adsorption, desorption, and exchange behaviors of thiolated ligands on nanotextured Au nanoparticle surfaces exhibit phenomenal site-to-site variations essentially dictated by the local surface curvatures, resulting in heterogeneous thermodynamic and kinetic profiles remarkably more sophisticated than those associated with the self-assembly of organothiol ligand monolayers on atomically flat Au surfaces. Here we use plasmon-enhanced Raman scattering as a spectroscopic tool combining time-resolving and molecular fingerprinting capabilities to quantitatively correlate the ligand dynamics with detailed molecular structures in real time under a diverse set of ligand adsorption, desorption, and exchange conditions at both equilibrium and nonequilibrium states, which enables us to delineate the effects of nanoscale surface curvature on the binding affinity, cooperativity, structural ordering, and the adsorption/desorption/exchange kinetics of organothiol ligands on colloidal Au nanoparticles. This work provides mechanistic insights on the key thermodynamic, kinetic, and geometric factors underpinning the surface curvature-dependent interfacial ligand behaviors, which serve as a central knowledge framework guiding the site-selective incorporation of desired surface functionalities into individual metallic nanoparticles for specific applications.

Facet Control of Gold Nanorods

While great success has been achieved in fine-tuning the aspect ratios and thereby the plasmon resonances of cylindrical Au nanorods, facet control with atomic level precision on the highly curved nanorod surfaces has long been a significantly more challenging task. The intrinsic structural complexity and lack of precise facet control of the nanorod surfaces remain the major obstacles for the atomic-level elucidation of the structure-property relationships that underpin the intriguing catalytic performance of Au nanorods. Here we demonstrate that the facets of single-crystalline Au nanorods can be precisely tailored using cuprous ions and cetyltrimethylammonium bromide as a unique pair of surface capping competitors to guide the particle geometry evolution during nanorod overgrowth. By deliberately maneuvering the competition between cuprous ions and cetyltrimethylammonium bromide, we have been able to create, in a highly controllable and selective manner, an entire family of nanorod-derived anisotropic multifaceted geometries whose surfaces are enclosed by specific types of well-defined high-index and low-index facets. This facet-controlled nanorod overgrowth approach also allows us to fine-tune the particle aspect ratios while well-preserving all the characteristic facets and geometric features of the faceted Au nanorods. Taking full advantage of the combined structural and plasmonic tunability, we have further studied the facet-dependent heterogeneous catalysis on well-faceted Au nanorods using surface-enhanced Raman spectroscopy as an ultrasensitive spectroscopic tool with unique time-resolving and molecular finger-printing capabilities.