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Zhdanov G, Gambaryan A, Akhmetova A, Yaminsky I, Kukushkin V, Zavyalova E. Nanoisland SERS-Substrates for Specific Detection and Quantification of Influenza A Virus. BIOSENSORS 2023; 14:20. [PMID: 38248397 PMCID: PMC10813417 DOI: 10.3390/bios14010020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Revised: 12/26/2023] [Accepted: 12/27/2023] [Indexed: 01/23/2024]
Abstract
Surface-enhanced Raman spectroscopy (SERS)-based aptasensors for virus determination have attracted a lot of interest recently. This approach provides both specificity due to an aptamer component and a low limit of detection due to signal enhancement by a SERS substrate. The most successful SERS-based aptasensors have a limit of detection (LoD) of 10-100 viral particles per mL (VP/mL) that is advantageous compared to polymerase chain reactions. These characteristics of the sensors require the use of complex substrates. Previously, we described silver nanoisland SERS-substrate with a reproducible and uniform surface, demonstrating high potency for industrial production and a suboptimal LoD of 4 × 105 VP/mL of influenza A virus. Here we describe a study of the sensor morphology, revealing an unexpected mechanism of signal enhancement through the distortion of the nanoisland layer. A novel modification of the aptasensor was proposed with chromium-enhanced adhesion of silver nanoparticles to the surface as well as elimination of the buffer-dependent distortion-triggering steps. As a result, the LoD of the Influenza A virus was decreased to 190 VP/mL, placing the nanoisland SERS-based aptasensors in the rank of the most powerful sensors for viral detection.
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Affiliation(s)
- Gleb Zhdanov
- Chemistry Department, Lomonosov Moscow State University, 119991 Moscow, Russia; (G.Z.); (E.Z.)
- Moscow Institute of Physics and Technology, Institute of Quantum Technologies, 141700 Dolgoprudny, Russia
| | - Alexandra Gambaryan
- Chumakov Federal Scientific Centre for Research and Development of Immune and Biological Products RAS, 108819 Moscow, Russia
| | - Assel Akhmetova
- Physics Department, Lomonosov Moscow State University, 119991 Moscow, Russia; (A.A.); (I.Y.)
| | - Igor Yaminsky
- Physics Department, Lomonosov Moscow State University, 119991 Moscow, Russia; (A.A.); (I.Y.)
| | - Vladimir Kukushkin
- Osipyan Institute of Solid State Physics of the Russian Academy of Science, 142432 Chernogolovka, Russia;
| | - Elena Zavyalova
- Chemistry Department, Lomonosov Moscow State University, 119991 Moscow, Russia; (G.Z.); (E.Z.)
- Moscow Institute of Physics and Technology, Institute of Quantum Technologies, 141700 Dolgoprudny, Russia
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2
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Kukushkin V, Ambartsumyan O, Subekin A, Astrakhantseva A, Gushchin V, Nikonova A, Dorofeeva A, Zverev V, Keshek A, Meshcheryakova N, Zaborova O, Gambaryan A, Zavyalova E. Multiplex Lithographic SERS Aptasensor for Detection of Several Respiratory Viruses in One Pot. Int J Mol Sci 2023; 24:ijms24098081. [PMID: 37175786 PMCID: PMC10178974 DOI: 10.3390/ijms24098081] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2023] [Revised: 04/24/2023] [Accepted: 04/27/2023] [Indexed: 05/15/2023] Open
Abstract
Rapid and reliable techniques for virus identification are required in light of recurring epidemics and pandemics throughout the world. Several techniques have been distributed for testing the flow of patients. Polymerase chain reaction with reverse transcription is a reliable and sensitive, though not rapid, tool. The antibody-based strip is a rapid, though not reliable, and sensitive tool. A set of alternative tools is being developed to meet all the needs of the customer. Surface-enhanced Raman spectroscopy (SERS) provides the possibility of single molecule detection taking several minutes. Here, a multiplex lithographic SERS aptasensor was developed aiming at the detection of several respiratory viruses in one pot within 17 min. The four labeled aptamers were anchored onto the metal surface of four SERS zones; the caught viruses affect the SERS signals of the labels, providing changes in the analytical signals. The sensor was able to decode mixes of SARS-CoV-2 (severe acute respiratory syndrome coronavirus two), influenza A virus, respiratory syncytial virus, and adenovirus within a single experiment through a one-stage recognition process.
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Affiliation(s)
- Vladimir Kukushkin
- Osipyan Institute of Solid State Physics, Russian Academy of Science, 142432 Chernogolovka, Russia
| | | | - Alexei Subekin
- Moscow Institute of Physics and Technology, 141701 Dolgoprudny, Russia
| | - Anna Astrakhantseva
- Osipyan Institute of Solid State Physics, Russian Academy of Science, 142432 Chernogolovka, Russia
- Moscow Institute of Physics and Technology, 141701 Dolgoprudny, Russia
| | - Vladimir Gushchin
- N. F. Gamaleya Federal Research Center for Epidemiology & Microbiology, 123098 Moscow, Russia
| | - Alexandra Nikonova
- Mechnikov Research Institute of Vaccines and Sera, 105064 Moscow, Russia
| | | | - Vitaly Zverev
- Mechnikov Research Institute of Vaccines and Sera, 105064 Moscow, Russia
| | - Anna Keshek
- Chemistry Department of Lomonosov, Moscow State University, 119991 Moscow, Russia
| | | | - Olga Zaborova
- Chemistry Department of Lomonosov, Moscow State University, 119991 Moscow, Russia
| | - Alexandra Gambaryan
- Chumakov Federal Scientific Center for Research, Development of Immune and Biological Products RAS, 108819 Moscow, Russia
| | - Elena Zavyalova
- Chemistry Department of Lomonosov, Moscow State University, 119991 Moscow, Russia
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3
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Lukose J, Barik AK, George SD, Murukeshan VM, Chidangil S. Raman spectroscopy for viral diagnostics. Biophys Rev 2023; 15:199-221. [PMID: 37113565 PMCID: PMC10088700 DOI: 10.1007/s12551-023-01059-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2022] [Accepted: 03/24/2023] [Indexed: 04/29/2023] Open
Abstract
Raman spectroscopy offers the potential for fingerprinting biological molecules at ultra-low concentration and therefore has potential for the detection of viruses. Here we review various Raman techniques employed for the investigation of viruses. Different Raman techniques are discussed including conventional Raman spectroscopy, surface-enhanced Raman spectroscopy, Raman tweezer, tip-enhanced Raman Spectroscopy, and coherent anti-Stokes Raman scattering. Surface-enhanced Raman scattering can play an essential role in viral detection by multiplexing nanotechnology, microfluidics, and machine learning for ensuring spectral reproducibility and efficient workflow in sample processing and detection. The application of these techniques to diagnose the SARS-CoV-2 virus is also reviewed. Graphical abstract Supplementary Information The online version contains supplementary material available at 10.1007/s12551-023-01059-4.
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Affiliation(s)
- Jijo Lukose
- Centre of Excellence for Biophotonics, Department of Atomic and Molecular Physics, Manipal Academy of Higher Education, 576104 Manipal, India
| | - Ajaya Kumar Barik
- Centre of Excellence for Biophotonics, Department of Atomic and Molecular Physics, Manipal Academy of Higher Education, 576104 Manipal, India
| | - Sajan D. George
- Centre for Applied Nanosciences, Department of Atomic and Molecular Physics, Manipal Academy of Higher Education, 576104 Manipal, India
| | - V. M. Murukeshan
- Centre for Optical and Laser Engineering, School of Mechanical and Aerospace Engineering, Nanyang Technological University, 50 Nanyang Avenue, 639798 Singapore, Singapore
| | - Santhosh Chidangil
- Centre of Excellence for Biophotonics, Department of Atomic and Molecular Physics, Manipal Academy of Higher Education, 576104 Manipal, India
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4
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Wang X, Li S, Qu H, Hao L, Shao T, Wang K, Xia Z, Li Z, Li Q. SERS-based immunomagnetic bead for rapid detection of H5N1 influenza virus. Influenza Other Respir Viruses 2023; 17:e13114. [PMID: 36909299 PMCID: PMC9996428 DOI: 10.1111/irv.13114] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2022] [Revised: 02/02/2023] [Accepted: 02/03/2023] [Indexed: 03/11/2023] Open
Abstract
The surface-enhanced Raman scattering (SERS) has recently drawn attention in the detection of respiratory viruses, but there have been few reports of the direct detection of viruses. In this study, a sandwich immunomagnetic bead SERS was established for the rapid diagnosis of the H5N1 influenza virus. The detection limit was estimated to be 5.0 × 10-6 TCID50/ml. The method showed excellent specificity with no cross-reaction with H1N1, H5N6 or H9N2. The H5N1 influenza virus detection accuracy of the SERS method was 100% in chicken embryos. The results hold great promise for the utilization of SERS as an innovative approach in the diagnosis of influenza virus.
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Affiliation(s)
- Xiwen Wang
- Changchun Veterinary Research InstituteChinese Academy of Agricultural SciencesChangchunChina
- Administration for Drug and Instrument Supervision and Inspection of PLAJLSFBeijingChina
| | - Song Li
- Changchun Veterinary Research InstituteChinese Academy of Agricultural SciencesChangchunChina
| | - Han Qu
- Changchun Veterinary Research InstituteChinese Academy of Agricultural SciencesChangchunChina
| | - Liangyu Hao
- Jilin Province Animal Husbandry and Veterinary Academy of SciencesChangchunJilinChina
| | - Ting Shao
- The People's Hospital of ChangchunChangchunChina
| | - Kai Wang
- Changchun Veterinary Research InstituteChinese Academy of Agricultural SciencesChangchunChina
| | - Zhiping Xia
- Changchun Veterinary Research InstituteChinese Academy of Agricultural SciencesChangchunChina
| | - Zhiping Li
- Changchun Veterinary Research InstituteChinese Academy of Agricultural SciencesChangchunChina
| | - Qianxue Li
- Changchun Veterinary Research InstituteChinese Academy of Agricultural SciencesChangchunChina
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5
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Awiaz G, Lin J, Wu A. Recent advances of Au@Ag core-shell SERS-based biosensors. EXPLORATION (BEIJING, CHINA) 2023; 3:20220072. [PMID: 37323623 PMCID: PMC10190953 DOI: 10.1002/exp.20220072] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/23/2022] [Accepted: 05/18/2022] [Indexed: 06/17/2023]
Abstract
The methodological advancements in surface-enhanced Raman scattering (SERS) technique with nanoscale materials based on noble metals, Au, Ag, and their bimetallic alloy Au-Ag, has enabled the highly efficient sensing of chemical and biological molecules at very low concentration values. By employing the innovative various type of Au, Ag nanoparticles and especially, high efficiency Au@Ag alloy nanomaterials as substrate in SERS based biosensors have revolutionized the detection of biological components including; proteins, antigens antibodies complex, circulating tumor cells, DNA, and RNA (miRNA), etc. This review is about SERS-based Au/Ag bimetallic biosensors and their Raman enhanced activity by focusing on different factors related to them. The emphasis of this research is to describe the recent developments in this field and conceptual advancements behind them. Furthermore, in this article we apex the understanding of impact by variation in basic features like effects of size, shape varying lengths, thickness of core-shell and their influence of large-scale magnitude and morphology. Moreover, the detailed information about recent biological applications based on these core-shell noble metals, importantly detection of receptor binding domain (RBD) protein of COVID-19 is provided.
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Affiliation(s)
- Gul Awiaz
- Cixi Institute of Biomedical Engineering, International Cooperation Base of Biomedical Materials Technology and Application, Chinese Academy of Sciences (CAS) Key Laboratory of Magnetic Materials and Devices and Zhejiang Engineering Research Center for Biomedical MaterialsNingbo Institute of Materials Technology and Engineering, CASNingboChina
- University of Chinese Academy of SciencesBeijingChina
| | - Jie Lin
- Cixi Institute of Biomedical Engineering, International Cooperation Base of Biomedical Materials Technology and Application, Chinese Academy of Sciences (CAS) Key Laboratory of Magnetic Materials and Devices and Zhejiang Engineering Research Center for Biomedical MaterialsNingbo Institute of Materials Technology and Engineering, CASNingboChina
- Advanced Energy Science and Technology Guangdong LaboratoryHuizhouChina
| | - Aiguo Wu
- Cixi Institute of Biomedical Engineering, International Cooperation Base of Biomedical Materials Technology and Application, Chinese Academy of Sciences (CAS) Key Laboratory of Magnetic Materials and Devices and Zhejiang Engineering Research Center for Biomedical MaterialsNingbo Institute of Materials Technology and Engineering, CASNingboChina
- Advanced Energy Science and Technology Guangdong LaboratoryHuizhouChina
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6
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Kukushkin V, Kristavchuk O, Andreev E, Meshcheryakova N, Zaborova O, Gambaryan A, Nechaev A, Zavyalova E. Aptamer-coated track-etched membranes with a nanostructured silver layer for single virus detection in biological fluids. Front Bioeng Biotechnol 2023; 10:1076749. [PMID: 36704305 PMCID: PMC9871243 DOI: 10.3389/fbioe.2022.1076749] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2022] [Accepted: 12/28/2022] [Indexed: 01/11/2023] Open
Abstract
Aptasensors based on surface-enhanced Raman spectroscopy (SERS) are of high interest due to the superior specificity and low limit of detection. It is possible to produce stable and cheap SERS-active substrates and portable equipment meeting the requirements of point-of-care devices. Here we combine the membrane filtration and SERS-active substrate in the one pot. This approach allows efficient adsorption of the viruses from the solution onto aptamer-covered silver nanoparticles. Specific determination of the viruses was provided by the aptamer to influenza A virus labeled with the Raman-active label. The SERS-signal from the label was decreased with a descending concentration of the target virus. Even several virus particles in the sample provided an increase in SERS-spectra intensity, requiring only a few minutes for the interaction between the aptamer and the virus. The limit of detection of the aptasensor was as low as 10 viral particles per mL (VP/mL) of influenza A virus or 2 VP/mL per probe. This value overcomes the limit of detection of PCR techniques (∼103 VP/mL). The proposed biosensor is very convenient for point-of-care applications.
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Affiliation(s)
| | | | | | | | | | - Alexandra Gambaryan
- Chumakov Federal Scientific Centre for Research and Development of Immune and Biological Products RAS, Moscow, Russia
| | | | - Elena Zavyalova
- Lomonosov Moscow State University, Moscow, Russia,*Correspondence: Elena Zavyalova,
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7
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Ali A, Nettey-Oppong EE, Effah E, Yu CY, Muhammad R, Soomro TA, Byun KM, Choi SH. Miniaturized Raman Instruments for SERS-Based Point-of-Care Testing on Respiratory Viruses. BIOSENSORS 2022; 12:bios12080590. [PMID: 36004986 PMCID: PMC9405795 DOI: 10.3390/bios12080590] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2022] [Revised: 07/24/2022] [Accepted: 07/26/2022] [Indexed: 06/12/2023]
Abstract
As surface-enhanced Raman scattering (SERS) has been used to diagnose several respiratory viruses (e.g., influenza A virus subtypes such as H1N1 and the new coronavirus SARS-CoV-2), SERS is gaining popularity as a method for diagnosing viruses at the point-of-care. Although the prior and quick diagnosis of respiratory viruses is critical in the outbreak of infectious disease, ELISA, PCR, and RT-PCR have been used to detect respiratory viruses for pandemic control that are limited for point-of-care testing. SERS provides quantitative data with high specificity and sensitivity in a real-time, label-free, and multiplex manner recognizing molecular fingerprints. Recently, the design of Raman spectroscopy system was simplified from a complicated design to a small and easily accessible form that enables point-of-care testing. We review the optical design (e.g., laser wavelength/power and detectors) of commercialized and customized handheld Raman instruments. As respiratory viruses have prominent risk on the pandemic, we review the applications of handheld Raman devices for detecting respiratory viruses. By instrumentation and commercialization advancements, the advent of the portable SERS device creates a fast, accurate, practical, and cost-effective analytical method for virus detection, and would continue to attract more attention in point-of-care testing.
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Affiliation(s)
- Ahmed Ali
- Department of Electrical Engineering, Sukkur IBA University, Sukkur 65200, Pakistan;
| | - Ezekiel Edward Nettey-Oppong
- Department of Biomedical Engineering, Yonsei University, Wonju 26493, Korea; (E.E.N.-O.); (E.E.); (C.Y.Y.); (R.M.)
| | - Elijah Effah
- Department of Biomedical Engineering, Yonsei University, Wonju 26493, Korea; (E.E.N.-O.); (E.E.); (C.Y.Y.); (R.M.)
| | - Chan Yeong Yu
- Department of Biomedical Engineering, Yonsei University, Wonju 26493, Korea; (E.E.N.-O.); (E.E.); (C.Y.Y.); (R.M.)
| | - Riaz Muhammad
- Department of Biomedical Engineering, Yonsei University, Wonju 26493, Korea; (E.E.N.-O.); (E.E.); (C.Y.Y.); (R.M.)
| | - Toufique Ahmed Soomro
- Department of Electronic Engineering, Quid-e-Awam University of Engineering, Science and Technology, Larkana 77150, Pakistan;
| | - Kyung Min Byun
- Department of Biomedical Engineering, Kyung Hee University, Yongin 17104, Korea
- Department of Electronics and Information Convergence Engineering, Kyung Hee University, Yongin 17104, Korea
| | - Seung Ho Choi
- Department of Biomedical Engineering, Yonsei University, Wonju 26493, Korea; (E.E.N.-O.); (E.E.); (C.Y.Y.); (R.M.)
- Department of Integrative Medicine, Major in Digital Healthcare, Yonsei University College of Medicine, Seoul 06229, Korea
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8
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Ultrasensitive Detection of Ovarian Cancer Biomarker Using Au Nanoplate SERS Immunoassay. BIOCHIP JOURNAL 2021. [DOI: 10.1007/s13206-021-00031-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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9
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Saviñon-Flores F, Méndez E, López-Castaños M, Carabarin-Lima A, López-Castaños KA, González-Fuentes MA, Méndez-Albores A. A Review on SERS-Based Detection of Human Virus Infections: Influenza and Coronavirus. BIOSENSORS 2021; 11:66. [PMID: 33670852 PMCID: PMC7997427 DOI: 10.3390/bios11030066] [Citation(s) in RCA: 37] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2021] [Revised: 02/19/2021] [Accepted: 02/22/2021] [Indexed: 05/05/2023]
Abstract
The diagnosis of respiratory viruses of zoonotic origin (RVsZO) such as influenza and coronaviruses in humans is crucial, because their spread and pandemic threat are the highest. Surface-enhanced Raman spectroscopy (SERS) is an analytical technique with promising impact for the point-of-care diagnosis of viruses. It has been applied to a variety of influenza A virus subtypes, such as the H1N1 and the novel coronavirus SARS-CoV-2. In this work, a review of the strategies used for the detection of RVsZO by SERS is presented. In addition, relevant information about the SERS technique, anthropozoonosis, and RVsZO is provided for a better understanding of the theme. The direct identification is based on trapping the viruses within the interstices of plasmonic nanoparticles and recording the SERS signal from gene fragments or membrane proteins. Quantitative mono- and multiplexed assays have been achieved following an indirect format through a SERS-based sandwich immunoassay. Based on this review, the development of multiplex assays that incorporate the detection of RVsZO together with their specific biomarkers and/or secondary disease biomarkers resulting from the infection progress would be desirable. These configurations could be used as a double confirmation or to evaluate the health condition of the patient.
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Affiliation(s)
- Fernanda Saviñon-Flores
- Facultad de Ciencias Químicas, Benemérita Universidad Autónoma de Puebla, 72570 Puebla, Mexico; (F.S.-F.); (E.M.); (M.A.G.-F.)
| | - Erika Méndez
- Facultad de Ciencias Químicas, Benemérita Universidad Autónoma de Puebla, 72570 Puebla, Mexico; (F.S.-F.); (E.M.); (M.A.G.-F.)
| | - Mónica López-Castaños
- Facultad de Ciencias Biológicas, Benemérita Universidad Autónoma de Puebla, 72570 Puebla, Mexico;
| | - Alejandro Carabarin-Lima
- Centro de Investigaciones en Ciencias Microbiológicas, Benemérita Universidad Autónoma de Puebla, 72570 Puebla, Mexico;
| | - Karen A. López-Castaños
- Centro de Química-ICUAP-Posgrado en Ciencias Ambientales, Benemérita Universidad Autónoma de Puebla, 72570 Puebla, Mexico;
| | - Miguel A. González-Fuentes
- Facultad de Ciencias Químicas, Benemérita Universidad Autónoma de Puebla, 72570 Puebla, Mexico; (F.S.-F.); (E.M.); (M.A.G.-F.)
| | - Alia Méndez-Albores
- Centro de Química-ICUAP-Posgrado en Ciencias Ambientales, Benemérita Universidad Autónoma de Puebla, 72570 Puebla, Mexico;
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10
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Gribanyov D, Zhdanov G, Olenin A, Lisichkin G, Gambaryan A, Kukushkin V, Zavyalova E. SERS-Based Colloidal Aptasensors for Quantitative Determination of Influenza Virus. Int J Mol Sci 2021; 22:1842. [PMID: 33673314 PMCID: PMC7918581 DOI: 10.3390/ijms22041842] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2021] [Revised: 02/07/2021] [Accepted: 02/09/2021] [Indexed: 02/06/2023] Open
Abstract
Development of sensitive techniques for rapid detection of viruses is on a high demand. Surface-enhanced Raman spectroscopy (SERS) is an appropriate tool for new techniques due to its high sensitivity. DNA aptamers are short structured oligonucleotides that can provide specificity for SERS biosensors. Existing SERS-based aptasensors for rapid virus detection had several disadvantages. Some of them lacked possibility of quantitative determination, while others had sophisticated and expensive implementation. In this paper, we provide a new approach that combines rapid specific detection and the possibility of quantitative determination of viruses using the example of influenza A virus.
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Affiliation(s)
- Dmitry Gribanyov
- Institute of Solid State Physics of Russian Academy of Science, 142432 Chernogolovka, Russia;
| | - Gleb Zhdanov
- Chemistry Department, Lomonosov Moscow State University, 119991 Moscow, Russia; (G.Z.); (A.O.); (G.L.)
| | - Andrei Olenin
- Chemistry Department, Lomonosov Moscow State University, 119991 Moscow, Russia; (G.Z.); (A.O.); (G.L.)
| | - Georgii Lisichkin
- Chemistry Department, Lomonosov Moscow State University, 119991 Moscow, Russia; (G.Z.); (A.O.); (G.L.)
| | - Alexandra Gambaryan
- Chumakov Federal Scientific Center for Research and Development of Immune and Biological Products RAS, 108819 Moscow, Russia;
| | - Vladimir Kukushkin
- Institute of Solid State Physics of Russian Academy of Science, 142432 Chernogolovka, Russia;
| | - Elena Zavyalova
- Chemistry Department, Lomonosov Moscow State University, 119991 Moscow, Russia; (G.Z.); (A.O.); (G.L.)
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11
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Tadesse LF, Safir F, Ho CS, Hasbach X, Khuri-Yakub BP, Jeffrey SS, Saleh AAE, Dionne J. Toward rapid infectious disease diagnosis with advances in surface-enhanced Raman spectroscopy. J Chem Phys 2021; 152:240902. [PMID: 32610995 DOI: 10.1063/1.5142767] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Abstract
In a pandemic era, rapid infectious disease diagnosis is essential. Surface-enhanced Raman spectroscopy (SERS) promises sensitive and specific diagnosis including rapid point-of-care detection and drug susceptibility testing. SERS utilizes inelastic light scattering arising from the interaction of incident photons with molecular vibrations, enhanced by orders of magnitude with resonant metallic or dielectric nanostructures. While SERS provides a spectral fingerprint of the sample, clinical translation is lagged due to challenges in consistency of spectral enhancement, complexity in spectral interpretation, insufficient specificity and sensitivity, and inefficient workflow from patient sample collection to spectral acquisition. Here, we highlight the recent, complementary advances that address these shortcomings, including (1) design of label-free SERS substrates and data processing algorithms that improve spectral signal and interpretability, essential for broad pathogen screening assays; (2) development of new capture and affinity agents, such as aptamers and polymers, critical for determining the presence or absence of particular pathogens; and (3) microfluidic and bioprinting platforms for efficient clinical sample processing. We also describe the development of low-cost, point-of-care, optical SERS hardware. Our paper focuses on SERS for viral and bacterial detection, in hopes of accelerating infectious disease diagnosis, monitoring, and vaccine development. With advances in SERS substrates, machine learning, and microfluidics and bioprinting, the specificity, sensitivity, and speed of SERS can be readily translated from laboratory bench to patient bedside, accelerating point-of-care diagnosis, personalized medicine, and precision health.
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Affiliation(s)
- Loza F Tadesse
- Department of Bioengineering, Stanford University School of Medicine and School of Engineering, Stanford, California 94305, USA
| | - Fareeha Safir
- Department of Mechanical Engineering, Stanford University School of Engineering, Stanford, California 94305, USA
| | - Chi-Sing Ho
- Department of Applied Physics, Stanford University School of Humanities and Sciences, Stanford, California 94305, USA
| | - Ximena Hasbach
- Department of Materials Science and Engineering, Stanford University School of Engineering, Stanford, California 94305, USA
| | - Butrus Pierre Khuri-Yakub
- Department of Electrical Engineering, Stanford University School of Engineering, Stanford, California 94305, USA
| | - Stefanie S Jeffrey
- Department of Surgery, Stanford University School of Medicine, Stanford, California 94305, USA
| | - Amr A E Saleh
- Department of Materials Science and Engineering, Stanford University School of Engineering, Stanford, California 94305, USA
| | - Jennifer Dionne
- Department of Materials Science and Engineering, Stanford University School of Engineering, Stanford, California 94305, USA
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12
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Shin H, Seo D, Choi Y. Extracellular Vesicle Identification Using Label-Free Surface-Enhanced Raman Spectroscopy: Detection and Signal Analysis Strategies. Molecules 2020; 25:E5209. [PMID: 33182340 PMCID: PMC7664897 DOI: 10.3390/molecules25215209] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Revised: 10/19/2020] [Accepted: 11/05/2020] [Indexed: 02/07/2023] Open
Abstract
Extracellular vesicles (EVs) have been widely investigated as promising biomarkers for the liquid biopsy of diseases, owing to their countless roles in biological systems. Furthermore, with the notable progress of exosome research, the use of label-free surface-enhanced Raman spectroscopy (SERS) to identify and distinguish disease-related EVs has emerged. Even in the absence of specific markers for disease-related EVs, label-free SERS enables the identification of unique patterns of disease-related EVs through their molecular fingerprints. In this review, we describe label-free SERS approaches for disease-related EV pattern identification in terms of substrate design and signal analysis strategies. We first describe the general characteristics of EVs and their SERS signals. We then present recent works on applied plasmonic nanostructures to sensitively detect EVs and notable methods to interpret complex spectral data. This review also discusses current challenges and future prospects of label-free SERS-based disease-related EV pattern identification.
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Affiliation(s)
- Hyunku Shin
- Department of Bio-convergence Engineering, Korea University, Seoul 02841, Korea; (H.S.); (D.S.)
| | - Dongkwon Seo
- Department of Bio-convergence Engineering, Korea University, Seoul 02841, Korea; (H.S.); (D.S.)
| | - Yeonho Choi
- Department of Bio-convergence Engineering, Korea University, Seoul 02841, Korea; (H.S.); (D.S.)
- School of Biomedical Engineering, Korea University, Seoul 02841, Korea
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Ambartsumyan O, Gribanyov D, Kukushkin V, Kopylov A, Zavyalova E. SERS-Based Biosensors for Virus Determination with Oligonucleotides as Recognition Elements. Int J Mol Sci 2020; 21:ijms21093373. [PMID: 32397680 PMCID: PMC7247000 DOI: 10.3390/ijms21093373] [Citation(s) in RCA: 36] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2020] [Revised: 05/07/2020] [Accepted: 05/08/2020] [Indexed: 01/22/2023] Open
Abstract
Viral infections are among the main causes of morbidity and mortality of humans; sensitive and specific diagnostic methods for the rapid identification of viral pathogens are required. Surface-enhanced Raman spectroscopy (SERS) is one of the most promising techniques for routine analysis due to its excellent sensitivity, simple and low-cost instrumentation and minimal required sample preparation. The outstanding sensitivity of SERS is achieved due to tiny nanostructures which must be assembled before or during the analysis. As for specificity, it may be provided using recognition elements. Antibodies, complimentary nucleic acids and aptamers are the most usable recognition elements for virus identification. Here, SERS-based biosensors for virus identification with oligonucleotides as recognition elements are reviewed, and the potential of these biosensors is discussed.
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Affiliation(s)
| | - Dmitry Gribanyov
- Institute of Solid State Physics RAS, Chernogolovka 142432, Russia;
| | - Vladimir Kukushkin
- Institute of Solid State Physics RAS, Chernogolovka 142432, Russia;
- Correspondence: (V.K.); (E.Z.); Tel.: +7-495-939-3149 (E.Z.)
| | - Alexey Kopylov
- Chemistry Department, Lomonosov Moscow State University, Moscow 119991, Russia;
| | - Elena Zavyalova
- Chemistry Department, Lomonosov Moscow State University, Moscow 119991, Russia;
- Correspondence: (V.K.); (E.Z.); Tel.: +7-495-939-3149 (E.Z.)
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14
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Eom G, Hwang A, Kim H, Yang S, Lee DK, Song S, Ha K, Jeong J, Jung J, Lim EK, Kang T. Diagnosis of Tamiflu-Resistant Influenza Virus in Human Nasal Fluid and Saliva Using Surface-Enhanced Raman Scattering. ACS Sens 2019; 4:2282-2287. [PMID: 31407570 DOI: 10.1021/acssensors.9b00697] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Influenza viruses cause respiratory infection, spread through respiratory secretions, and are shed into the nasal secretion and saliva specimens. Therefore, nasal fluid and saliva are effective clinical samples for the diagnosis of influenza virus-infected patients. Although several methods have been developed to detect various types of influenza viruses, approaches for detecting mutant influenza viruses in clinical samples are rarely reported. Herein, we report for the first time a surface-enhanced Raman scattering (SERS)-based sensing platform for oseltamivir-resistant pandemic H1N1 (pH1N1) virus detection in human nasal fluid and saliva. By combining SERS-active urchin Au nanoparticles and oseltamivir hexylthiol, an excellent receptor for the pH1N1/H275Y mutant virus, we detected the pH1N1/H275Y virus specifically and sensitively in human saliva and nasal fluid samples. Considering that the current influenza virus infection testing methods do not provide information on the antiviral drug resistance of the virus, the proposed SERS-based diagnostic test for the oseltamivir-resistant virus will inform clinical decisions about the treatment of influenza virus infections, avoiding the unnecessary prescription of ineffective drugs and greatly improving therapy.
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Affiliation(s)
- Gayoung Eom
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
| | - Ahreum Hwang
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
| | | | - Siyeong Yang
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
| | | | | | | | - Jinyoung Jeong
- Department of Nanobiotechnology, KRIBB School of Biotechnology, UST, Daejeon 34113, Republic of Korea
| | - Juyeon Jung
- Department of Nanobiotechnology, KRIBB School of Biotechnology, UST, Daejeon 34113, Republic of Korea
| | - Eun-Kyung Lim
- Department of Nanobiotechnology, KRIBB School of Biotechnology, UST, Daejeon 34113, Republic of Korea
| | - Taejoon Kang
- Department of Nanobiotechnology, KRIBB School of Biotechnology, UST, Daejeon 34113, Republic of Korea
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15
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Eom G, Hwang A, Lee DK, Guk K, Moon J, Jeong J, Jung J, Kim B, Lim EK, Kang T. Superb Specific, Ultrasensitive, and Rapid Identification of the Oseltamivir-Resistant H1N1 Virus: Naked-Eye and SERS Dual-Mode Assay Using Functional Gold Nanoparticles. ACS APPLIED BIO MATERIALS 2019; 2:1233-1240. [DOI: 10.1021/acsabm.8b00807] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Gayoung Eom
- Bionanotechnology Research Center, KRIBB, Daejeon 34141, Republic of Korea
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
| | - Ahreum Hwang
- Bionanotechnology Research Center, KRIBB, Daejeon 34141, Republic of Korea
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
| | - Do Kyung Lee
- BioNano Health Guard Research Center, KRIBB, Daejeon 34141, Republic of Korea
| | - Kyeonghye Guk
- Bionanotechnology Research Center, KRIBB, Daejeon 34141, Republic of Korea
- Department of Nanobiotechnology, KRIBB School of Biotechnology, UST, Daejeon 34113, Republic of Korea
| | - Jeong Moon
- Bionanotechnology Research Center, KRIBB, Daejeon 34141, Republic of Korea
- Department of Chemical and Biomolecular Engineering, KAIST, Daejeon 34141, Republic of Korea
| | - Jinyoung Jeong
- Department of Nanobiotechnology, KRIBB School of Biotechnology, UST, Daejeon 34113, Republic of Korea
- Environmental Disease Research Center, KRIBB, Daejeon 34141, Republic of Korea
| | - Juyeon Jung
- Bionanotechnology Research Center, KRIBB, Daejeon 34141, Republic of Korea
- Department of Nanobiotechnology, KRIBB School of Biotechnology, UST, Daejeon 34113, Republic of Korea
| | - Bongsoo Kim
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
| | - Eun-Kyung Lim
- Bionanotechnology Research Center, KRIBB, Daejeon 34141, Republic of Korea
- Department of Nanobiotechnology, KRIBB School of Biotechnology, UST, Daejeon 34113, Republic of Korea
| | - Taejoon Kang
- Bionanotechnology Research Center, KRIBB, Daejeon 34141, Republic of Korea
- Department of Nanobiotechnology, KRIBB School of Biotechnology, UST, Daejeon 34113, Republic of Korea
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16
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Zou Q, Li X, Xue T, Mo S, Su Q, Zheng J. Sensitive and Selective Detection of Mercury Ions in Aqueous Media Using an Oligonucleotide-functionalized Nanosensor and SERS Chip. ANAL SCI 2018; 35:493-498. [PMID: 30298820 DOI: 10.2116/analsci.18p381] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
A surface-enhanced Raman scattering (SERS) platform for the selective trace analysis of Hg2+ ions was reported, based on poly-thymine (T) aptamer/2-naphthalenethiol (2-NT)-modified gold nanoparticles (AuNPs), which was an oligonucleotide-functionalized nanosensor and SERS chip. 2-NT was used as a Raman reporter, and T aptamer could form a T-Hg2+-T structure with Hg2+ ions making an SERS nanosensor absorbed to the SERS chip. The optimum concentrations of DNA and 2-NT were obtained. An average of 960 DNA molecules attached to each AuNP were measured. The limit of detection (LOD) was 1.0 ppt (1.0 × 10-12 g/mL), which is far below the limit of 10.0 ppb for drinking water, stipulated by the World Health Organization. The sensor has the advantages of low detection cost, a simple sample pretreatment, a green solution and reducing false positives. Furthermore, the nanosensor was used for the determination of trace Hg2+ in the water of a lake; a reliable result was obtained accurately.
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Affiliation(s)
- Qiang Zou
- Department of Marine Environmental Science and Technology, School of Marine Science and Technology, Tianjin University.,School of Microelectronics, Tianjin University.,Xuanhuai School of Innovation and Entrepreneurship, Tianjin University
| | - Xin Li
- Department of Marine Environmental Science and Technology, School of Marine Science and Technology, Tianjin University
| | - Tao Xue
- College of Material Science and Engineering, Tianjin University
| | - Shentong Mo
- School of Microelectronics, Tianjin University
| | - Qi Su
- School of Microelectronics, Tianjin University
| | - Jia Zheng
- School of Microelectronics, Tianjin University
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Moore TJ, Moody AS, Payne TD, Sarabia GM, Daniel AR, Sharma B. In Vitro and In Vivo SERS Biosensing for Disease Diagnosis. BIOSENSORS 2018; 8:E46. [PMID: 29751641 PMCID: PMC6022968 DOI: 10.3390/bios8020046] [Citation(s) in RCA: 76] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/02/2018] [Revised: 05/07/2018] [Accepted: 05/10/2018] [Indexed: 01/24/2023]
Abstract
For many disease states, positive outcomes are directly linked to early diagnosis, where therapeutic intervention would be most effective. Recently, trends in disease diagnosis have focused on the development of label-free sensing techniques that are sensitive to low analyte concentrations found in the physiological environment. Surface-enhanced Raman spectroscopy (SERS) is a powerful vibrational spectroscopy that allows for label-free, highly sensitive, and selective detection of analytes through the amplification of localized electric fields on the surface of a plasmonic material when excited with monochromatic light. This results in enhancement of the Raman scattering signal, which allows for the detection of low concentration analytes, giving rise to the use of SERS as a diagnostic tool for disease. Here, we present a review of recent developments in the field of in vivo and in vitro SERS biosensing for a range of disease states including neurological disease, diabetes, cardiovascular disease, cancer, and viral disease.
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Affiliation(s)
- T Joshua Moore
- Department of Chemistry, The University of Tennessee, 1420 Circle Drive, Knoxville, TN 37996, USA.
| | - Amber S Moody
- Department of Chemistry, The University of Tennessee, 1420 Circle Drive, Knoxville, TN 37996, USA.
| | - Taylor D Payne
- Department of Chemistry, The University of Tennessee, 1420 Circle Drive, Knoxville, TN 37996, USA.
| | - Grace M Sarabia
- Department of Chemistry, The University of Tennessee, 1420 Circle Drive, Knoxville, TN 37996, USA.
| | - Alyssa R Daniel
- Department of Chemistry, The University of Tennessee, 1420 Circle Drive, Knoxville, TN 37996, USA.
| | - Bhavya Sharma
- Department of Chemistry, The University of Tennessee, 1420 Circle Drive, Knoxville, TN 37996, USA.
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18
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Khlebtsov B, Pylaev T, Khanadeev V, Bratashov D, Khlebtsov N. Quantitative and multiplex dot-immunoassay using gap-enhanced Raman tags. RSC Adv 2017. [DOI: 10.1039/c7ra08113h] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Abstract
A highly specific, quantitative, and multiplex dot immunoassay has been developed. The immunoassay utilizes functionalized plasmonic gap-enhanced Raman tags (GERTs) as labels and nitrocellulose membrane as a substrate.
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Affiliation(s)
- Boris Khlebtsov
- Institute of Biochemistry and Physiology of Plants and Microorganisms
- Russian Academy of Sciences
- Saratov 410049
- Russia
| | - Timophey Pylaev
- Institute of Biochemistry and Physiology of Plants and Microorganisms
- Russian Academy of Sciences
- Saratov 410049
- Russia
| | - Vitaly Khanadeev
- Institute of Biochemistry and Physiology of Plants and Microorganisms
- Russian Academy of Sciences
- Saratov 410049
- Russia
| | | | - Nikolai Khlebtsov
- Institute of Biochemistry and Physiology of Plants and Microorganisms
- Russian Academy of Sciences
- Saratov 410049
- Russia
- National Research Saratov State University
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