1
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Kanagavel M, Sparjan Samuvel RM, Ramalingam V, Nechipadappu SK. Repurposing of Antifungal Drug Flucytosine/Flucytosine Cocrystals for Anticancer Activity against Prostate Cancer Targeting Apoptosis and Inflammatory Signaling Pathways. Mol Pharm 2024; 21:2577-2589. [PMID: 38647021 DOI: 10.1021/acs.molpharmaceut.4c00156] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/25/2024]
Abstract
This study aimed to repurpose the antifungal drug flucytosine (FCN) for anticancer activity together with cocrystals of nutraceutical coformers sinapic acid (SNP) and syringic acid (SYA). The cocrystal screening experiments with SNP resulted in three cocrystal hydrate forms in which two are polymorphs, namely, FCN-SNP F-I and FCN-SNP F-II, and the third one with different stoichiometry in the asymmetric unit (1:2:1 ratio of FCN:SNP:H2O, FCN-SNP F-III). Cocrystallization with SYA resulted in two hydrated cocrystal polymorphs, namely, FCN-SYA F-I and FCN-SYA F-II. All the cocrystal polymorphs were obtained concomitantly during the slow evaporation method, and one of the polymorphs of each system was produced in bulk by the slurry method. The interaction energy and lattice energies of all cocrystal polymorphs were established using solid-state DFT calculations, and the outcomes correlated with the experimental results. Further, the in vitro cytotoxic activity of the cocrystals was determined against DU145 prostate cancer and the results showed that the FCN-based cocrystals (FCN-SNP F-III and FCN-SYA F-I) have excellent growth inhibitory activity at lower concentrations compared with parent FCN molecules. The prepared cocrystals induce apoptosis by generating oxidative stress and causing nuclear damage in prostate cancer cells. The Western blot analysis also depicted that the cocrystals downregulate the inflammatory markers such as NLRP3 and caspase-1 and upregulate the intrinsic apoptosis signaling pathway marker proteins, such as Bax, p53, and caspase-3. These findings suggest that the antifungal drug FCN can be repurposed for anticancer activity.
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Affiliation(s)
- Manimurugan Kanagavel
- Centre for X-ray Crystallography, Department of Analytical & Structural Chemistry, CSIR-Indian Institute of Chemical Technology, Hyderabad 500 007, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Rajan Marystella Sparjan Samuvel
- Department of Natural Products and Medicinal Chemistry, CSIR-Indian Institute of Chemical Technology, Hyderabad 500 007, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Vaikundamoorthy Ramalingam
- Department of Natural Products and Medicinal Chemistry, CSIR-Indian Institute of Chemical Technology, Hyderabad 500 007, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Sunil Kumar Nechipadappu
- Centre for X-ray Crystallography, Department of Analytical & Structural Chemistry, CSIR-Indian Institute of Chemical Technology, Hyderabad 500 007, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
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2
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Ye X, Gutenthaler-Tietze J, Wu R, Xia G, Xu S, Liu B, Chen YH, Karaghiosoff K. In Situ X-Ray Techniques Unraveling Charge Distribution Induced by Halogen Bonds in Solvates of an Iodo-Substituted Squaraine Dye. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2024:e2400661. [PMID: 38659278 DOI: 10.1002/advs.202400661] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2024] [Revised: 03/22/2024] [Indexed: 04/26/2024]
Abstract
The importance of halogen bonds (XBs) in the regulation of material properties through a variation in the electrostatic potential of the halogen atom is not attracted much attention. Herein, this study utilizes in situ single crystal X-ray diffraction and synchrotron-based X-ray techniques to investigate the cooling-triggered irreversible single-crystal-to-single-crystal transformation of the DMF solvated iodo-substituted squaraine dye (SQD-I). Transformation is observed to be mediated by solvent-involved XB formation and strengthening of electrostatic interaction between adjacent SQD-I molecules. By immersing a DMF solvate in acetonitrile a solvent exchange without loss of long-range ordering is observed. This is attributed to conservation of the molecular charge distribution of SQD-I molecules during the process. The different solvates can be used in combination for temperature-dependent image encryption. This work emphasizes the changes caused by XB formation to the electrostatic potentials of halogen containing molecules and their influence on material properties and presents the potential utility of XBs in the design of soft-porous crystals and luminescent materials.
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Affiliation(s)
- Xiaoyu Ye
- The Institute for Advanced Studies (IAS), Wuhan University, Wuhan, 430072, China
| | | | - Ruoxuan Wu
- School of Biomedical Sciences and Engineering, South China University of Technology, Guangzhou, 511442, China
| | - Guomin Xia
- The Institute for Advanced Studies (IAS), Nanchang University, Nanchang, 330031, China
| | - Shidang Xu
- School of Biomedical Sciences and Engineering, South China University of Technology, Guangzhou, 511442, China
| | - Bin Liu
- Department of Chemical and Biomolecular Engineering, National University of Singapore, Singapore, 117585, Singapore
| | - Yi-Hung Chen
- The Institute for Advanced Studies (IAS), Wuhan University, Wuhan, 430072, China
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3
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Bürgi HB. The Cambridge Structural Database and structural dynamics. STRUCTURAL DYNAMICS (MELVILLE, N.Y.) 2024; 11:021302. [PMID: 38504974 PMCID: PMC10950365 DOI: 10.1063/4.0000244] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/12/2024] [Accepted: 02/13/2024] [Indexed: 03/21/2024]
Abstract
With the availability of the computer readable information in the Cambridge Structural Database (CSD), wide ranging, largely automated comparisons of fragment, molecular, and crystal structures have become possible. They show that the distributions of interatomic distances, angles, and torsion angles for a given structural fragment occurring in different environments are highly correlated among themselves and with other observables such as spectroscopic signals, reaction and activation energies. The correlations often extend continuously over large ranges of parameter values. They are reminiscent of bond breaking and forming reactions, polyhedral rearrangements, and conformational changes. They map-qualitatively-the regions of the structural parameter space in which molecular dynamics take place, namely, the low energy regions of the respective (free) energy surfaces. The extension and continuous nature of the correlations provides an organizing principle of large groups of structural data and suggests a reconsideration of traditional definitions and descriptions of bonds, "nonbonded" and "noncovalent" interactions in terms of Lewis acids interacting with Lewis bases. These aspects are illustrated with selected examples of historic importance and with some later developments. It seems that the amount of information in the CSD (and other structural databases) and the knowledge on the nature of, and the correlations within, this body of information should allow one-in the near future-to make credible interpolations and possibly predictions of structures and their properties with machine learning methods.
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Affiliation(s)
- Hans-Beat Bürgi
- Department of Chemistry, Biochemistry and Pharmaceutical Sciences, University of Berne, Freiestr. 3, CH-3012 Bern, Switzerland
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4
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Mohamed SK, Siddique SA, Karthikeyan S, Ahmed EA, Omran OA, Mague JT, Al-Salahi R, El Bakri Y. Synthesis, X-ray crystallography, computational investigation on quinoxaline derivatives as potent against adenosine receptor A2AAR. J Biomol Struct Dyn 2024:1-19. [PMID: 38385483 DOI: 10.1080/07391102.2024.2314268] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Accepted: 01/28/2024] [Indexed: 02/23/2024]
Abstract
Quinoxaline represents one of the most important classes of heterocyclic compounds, which have exhibited a wide range of biological activities and industrial importance in many different fields. In this regard, we have synthetized two new quinoxaline derivatives. Their structures were confirmed by single-crystal X-ray analysis. The compounds show potent activity against adenosine receptors A2AAR based on structural activity relationship studies. Further molecular docking, molecular dynamics, ADMET analysis, and DFT (density functional theory) calculations were performed to understand the titled compound's future drug candidacy. DFT computations confirmed the good stability of the synthesized compounds, as evidenced by the optimized molecular geometry, HOMO-LUMO energy gap, and intermolecular interactions. NBO analysis confirmed intermolecular interactions mediated by lone pair, bonding, and anti-bonding orbitals. All DFT findings were consistent with experimental results, indicating that the synthesized molecules are highly stable. These findings suggest that the synthesized compounds are promising candidates for further development as drugs for the treatment of A2AAR-related diseases.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Shaaban K Mohamed
- Chemistry and Environmental Division, Manchester Metropolitan University, Manchester, England
| | - Sabir Ali Siddique
- Institute of Chemistry, The Islamia University of Bahawalpur, Baghdad-ul-Jadeed Campus, Bahawalpur, Pakistan
| | - Subramani Karthikeyan
- Centre for Healthcare Advancement, Innovation and Research, Vellore Institute of Technology University, Chennai Campus, Chennai, Tamil Nadu, India
| | - Eman A Ahmed
- Department of Chemistry, Faculty of Science, Sohag University, Sohag, Egypt
| | - Omran A Omran
- Department of Chemistry, Faculty of Science, Sohag University, Sohag, Egypt
| | - Joel T Mague
- Department of Chemistry, Tulane University, New Orleans, LA, USA
| | - Rashad Al-Salahi
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, Riyadh, Saudi Arabia
| | - Youness El Bakri
- Department of Theoretical and Applied Chemistry, South Ural State University, Chelyabinsk, Russian Federation
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5
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Pimonova Y, Carpenter JE, Gruenwald M. Thermodynamic Stability Is a Poor Indicator of Cocrystallization in Models of Organic Molecules. J Am Chem Soc 2024; 146:2805-2815. [PMID: 38241026 DOI: 10.1021/jacs.3c13030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2024]
Abstract
Cocrystallizing a given molecule with another can be useful for adjusting the physical properties of molecules in the solid state. However, most combinations of molecules do not readily cocrystallize but form either one-component crystals or amorphous solids. Computational methods of crystal structure prediction can, in principle, identify the thermodynamically stable cocrystal and thus predict if molecules will cocrystallize or not. However, the pronounced polymorphism and tendency of many organic molecules to form disordered solids suggest that kinetic factors can play an important role in cocrystallization. The question remains: if a binary system of molecules has a thermodynamically stable cocrystal, will it indeed cocrystallize? To address this question, we simulate the crystallization of more than 2600 distinct pairs of chiral model molecules of similar size in 2D and calculate accurate crystal energy landscapes for all of them. Our analysis shows that thermodynamic criteria alone are unreliable in the prediction of cocrystallization. While the vast majority of cocrystals that form in our simulations are thermodynamically favorable, most coformer systems that have a thermodynamically stable cocrystal do not cocrystallize. We furthermore show that cocrystallization rates increase 3-fold when coformers are used that do not form well-ordered single-component crystals. Our results suggest that kinetic factors of cocrystallization are decisive in many cases.
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Affiliation(s)
- Yulia Pimonova
- Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, United States
| | - John E Carpenter
- Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, United States
| | - Michael Gruenwald
- Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, United States
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6
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Murray JS. The Formation of σ-Hole Bonds: A Physical Interpretation. Molecules 2024; 29:600. [PMID: 38338346 PMCID: PMC10856353 DOI: 10.3390/molecules29030600] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2023] [Revised: 01/17/2024] [Accepted: 01/23/2024] [Indexed: 02/12/2024] Open
Abstract
This paper discusses two quite different computational experiments relating to the formation of σ-hole bonds A···B. The first involves looking at the complex at equilibrium and finding the contour X of the electronic density which allows the iso-density envelopes of A and B to be nearly touching. This contour increases, becoming closer to the nuclei, as the strength of the interaction increases. The second experiment involves allowing A and B to approach each other, with the aim of finding the distance at which their 0.001 a.u. iso-density envelopes are nearly merging into one envelope. What is found in the second experiment may be somewhat surprising, in that the ratio of the distance between interacting atoms at this nearly merging point-divided by the sum of the van der Waals radii of these atoms-covers a narrow range, typically between 1.2 and 1.3. It is intriguing to note that for the dataset presented, approaching molecules attracted to each other appear to do so unknowing of the strength of their ultimate interaction. This second experiment also supports the notion that one should expect favorable interactions, in some instances, to have close contacts significantly greater than the sums of the van der Waals radii.
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Affiliation(s)
- Jane S Murray
- Department of Chemistry, University of New Orleans, New Orleans, LA 70148, USA
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7
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Abad N, Al-Ostoot FH, Ashraf S, Chkirate K, Aljohani MS, Alharbi HY, Buhlak S, El Hafi M, Van Meervelt L, Al-Maswari BM, Essassi EM, Ramli Y. Synthesis, crystal structure, DFT, Hirshfeld surface analysis, energy frameworks and in-Silico drug-targeting PFKFB3 kinase of novel triazolequinoxalin derivative (TZQ) as a therapeutic Strategy against cancer. Heliyon 2023; 9:e21312. [PMID: 37920528 PMCID: PMC10618769 DOI: 10.1016/j.heliyon.2023.e21312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2023] [Revised: 10/14/2023] [Accepted: 10/19/2023] [Indexed: 11/04/2023] Open
Abstract
Overall, drug design is a dynamic and evolving field, with researchers constantly working to improve their understanding of molecular interactions, develop new computational methods, and explore innovative techniques for creating effective and safe medications. The process can involve steps such as the identification of targets, the discovery of lead compounds, lead optimization, preliminary testing, human trials, regulatory approval and finally post-marketing surveillance, all aimed at bringing a new drug from concept to market. In this article, the synthesis of the novel triazolequinoxalin (TZQ) 1-((1-hexyl-1H-1,2,3-triazol-5-yl)methyl)-3-phenylquinoxalin-2(1H)-one (4) is reported. The structure has been identified with a variety of spectroscopic methods (1H, 13C NMR, and LC-MS) and finally, the structure has been determined by X-ray diffraction (XRD) studies. The TZQ molecule has crystallized in the monoclinic space C2/c group with unit cell dimensions a = 41.201(2) Å, b = 10.6339(6) Å, c = 9.4997(4) Å, β = 93.904(4). The crystal structure is stabilized by intermolecular interactions (N-H ⋯ O and N-H … Cg) occurring within the molecule. The presence of these intermolecular interactions is evaluated through analysis of Hirshfeld surfaces (HS) and two-dimensional (2D) chemical fingerprints map. Additionally, energy frameworks were employed to identify the prevailing interaction energy influencing the molecular arrangement. Density Functional Theory (DFT) calculations were computed to establish concurrence between theoretical and experimental results. Furthermore, the HOMO-LUMO energy levels were determined using the B3LYP/6-31+G(d, p) level of theory. Finally, molecular docking was used to predict the anti-cancer activity of the compound (4) against PFKFB3 kinase and presented noticeable hydrophilic and hydrophobic interactions at the active site region.
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Affiliation(s)
- Nadeem Abad
- Department of Biochemistry, Faculty of Education & Science, Al-Baydha University, Yemen
- Laboratory of Heterocyclic Organic Chemistry URAC 21, Pharmacochemistry Competence Center, Av. Ibn Battouta, BP 1014, Faculty of Sciences, Mohammed V University in Rabat, 10010, Morocco
| | - Fares Hezam Al-Ostoot
- Department of Biochemistry, Faculty of Education & Science, Al-Baydha University, Yemen
| | - Sajda Ashraf
- Dr.PanjwaniCenter for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi, Karachi 75270, Pakistan
| | - Karim Chkirate
- Laboratory of Heterocyclic Organic Chemistry URAC 21, Pharmacochemistry Competence Center, Av. Ibn Battouta, BP 1014, Faculty of Sciences, Mohammed V University in Rabat, 10010, Morocco
| | - Majed S. Aljohani
- Department of Chemistry, Faculty of Science, Taibah University, Yanbu, Saudi Arabia
| | - Hussam Y. Alharbi
- Department of Chemistry, Faculty of Science, Taibah University, Yanbu, Saudi Arabia
| | - Shafeek Buhlak
- Department of Chemistry, Abantİzzet Baysal University, 14280 Bolu, Turkey
| | - Mohamed El Hafi
- Laboratory of Heterocyclic Organic Chemistry URAC 21, Pharmacochemistry Competence Center, Av. Ibn Battouta, BP 1014, Faculty of Sciences, Mohammed V University in Rabat, 10010, Morocco
| | - Luc Van Meervelt
- Laboratory of Biomolecular Architecture, Department of Chemistry, KU Leuven, Celestijnenlaan 200F, Leuven, B-3001, Belgium
| | - Basheer M. Al-Maswari
- Department of Chemistry, Yuvaraja's College, University of Mysore, Mysuru, Karnataka 570005, India
| | - El Mokhtar Essassi
- Laboratory of Heterocyclic Organic Chemistry URAC 21, Pharmacochemistry Competence Center, Av. Ibn Battouta, BP 1014, Faculty of Sciences, Mohammed V University in Rabat, 10010, Morocco
| | - Youssef Ramli
- Laboratory of Medicinal Chemistry, Drug Sciences Research Center, Faculty of Medicine and Pharmacy, Mohammed V University in Rabat, Morocco
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8
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Gaile A, Belyakov S, Rjabovs V, Mihailovs I, Turovska B, Batenko N. Investigation of Weak Noncovalent Interactions Directed by the Amino Substituent of Pyrido- and Pyrimido-[1,2- a]benzimidazole-8,9-diones. ACS OMEGA 2023; 8:40960-40971. [PMID: 37929094 PMCID: PMC10621016 DOI: 10.1021/acsomega.3c07005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/13/2023] [Accepted: 09/26/2023] [Indexed: 11/07/2023]
Abstract
Quinones are small redox-active molecules that are able to form intra- and intermolecular interactions both in the solid state and in solution. On the basis of 6-amino-substituted pyrido- and pyrimido-[1,2-a]benzimidazole-8,9-diones, weak interactions were investigated by single-crystal X-ray and 1H NMR spectroscopy methods. Crystallization of quinone derivatives containing a -NH-CH2- fragment led to the formation of both chiral and achiral crystals. The presence of two forms with (endo form) and without (exo form) an intramolecular hydrogen bond was experimentally detected by X-ray crystallography analysis and variable-temperature (VT) 1H NMR experiments in the cases of isopentylamino- and benzylamino-substituted derivatives. Interestingly, the exo form dominates both in the solid state and in solution.
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Affiliation(s)
- Anastasija Gaile
- Riga
Technical University, Faculty of Materials Science and Applied Chemistry, 3/7 Paula Valdena St., Riga LV-1048, Latvia
| | - Sergey Belyakov
- Latvian
Institute of Organic Chemistry, 21 Aizkraukles St., Riga LV-1006, Latvia
| | - Vita̅lijs Rjabovs
- Riga
Technical University, Faculty of Materials Science and Applied Chemistry, 3/7 Paula Valdena St., Riga LV-1048, Latvia
| | - Igors Mihailovs
- Riga
Technical University, Faculty of Computer Science and Information
Technology, 10 Zunda
krastmala, Riga LV-1048, Latvia
- University
of Latvia, Institute of Solid State Physics, 8 Ķengaraga St., Riga LV-1063, Latvia
| | - Baiba Turovska
- Latvian
Institute of Organic Chemistry, 21 Aizkraukles St., Riga LV-1006, Latvia
| | - Nelli Batenko
- Riga
Technical University, Faculty of Materials Science and Applied Chemistry, 3/7 Paula Valdena St., Riga LV-1048, Latvia
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9
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Saunders LK, Irving D, Chater PA, Diaz-Lopez M. Noncovalent bonding assessment by pair distribution function. Faraday Discuss 2023; 244:356-369. [PMID: 37158101 DOI: 10.1039/d2fd00159d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
Noncovalent interactions are essential in the formation and properties of a diverse range of materials. However, reliably identifying noncovalent interactions remains challenging using conventional methods such as X-ray diffraction, especially in nanocrystalline, poorly crystalline or amorphous materials which lack long-range lattice periodicity. Here, we demonstrate the accurate determination of deviations in the local structure and tilting of aromatic rings during the temperature-induced first order structural transition in the 1 : 1 adduct of 4,4'-bipyridinium squarate (BIPY:SQA) from the low temperature form HAZFAP01 to high temperature HAZFAP07 by X-ray pair distribution function. This work demonstrates how pair distribution function analyses can improve our understanding of local structural deviations resulting from noncovalent bonds and guide the development of novel functional materials.
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Affiliation(s)
- Lucy K Saunders
- Diamond Light Source Ltd, Diamond House, Harwell Science and Innovation Campus, Didcot OX11 0DE, UK.
| | - Daniel Irving
- Diamond Light Source Ltd, Diamond House, Harwell Science and Innovation Campus, Didcot OX11 0DE, UK.
| | - Philip A Chater
- Diamond Light Source Ltd, Diamond House, Harwell Science and Innovation Campus, Didcot OX11 0DE, UK.
| | - Maria Diaz-Lopez
- Diamond Light Source Ltd, Diamond House, Harwell Science and Innovation Campus, Didcot OX11 0DE, UK.
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10
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Keskin E, Arslan H. Synthesis, crystal structure, DFT calculations, and Hirshfeld surface analysis of an NNN pincer type compound. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2023.135252] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/05/2023]
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11
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Comparative and biological studies of Cu2+ bicine and tricine chelates and their structures by single-crystal X-ray, DFT/B3LYP, and molecular docking studies. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2023.134963] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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12
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Studies on New Imidazo[2,1-b][1,3,4]thiadiazole Derivatives: Molecular Structure, Quantum Chemical Computational, and In silico Study of Inhibitory Activity Against Pim-1 Protein by using Molecular Modelling Methods and ADMET Profiling. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2022.134161] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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13
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Zhang P, Luo H, Cui L, Deng J, Xie S, Liu D, Wang S, Si X, Wang Z, Wan Y, Zhang E, Li X, Zhang L. Assessment of solid-liquid equilibrium behavior and thermodynamic analysis of natural plant extracts artemisinin (Form Ⅰ) in twelve mono-solvents. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.120975] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
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14
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Wang C, Sun CC. Mechanisms of Crystal Plasticization by Lattice Water. Pharm Res 2022; 39:3113-3122. [PMID: 35301669 DOI: 10.1007/s11095-022-03221-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2021] [Accepted: 02/26/2022] [Indexed: 12/27/2022]
Abstract
PURPOSE Water of crystallization has been observed to increase plasticity, decrease crystal hardness, and improve powder compressibility and tabletability of organic crystals. This work is aimed at gaining a molecular level insight into this observation. METHOD We systematically analyzed crystal structures of five stoichiometric hydrate systems, using several complementary techniques of analysis, including energy framework, water environment, overall packing change, hydrate stability, and slip plane identification. RESULTS The plasticizing effect by lattice water is always accompanied by an introduction of more facile slip planes, lower packing efficiency, and lower density in all hydrate systems examined in this work. Three distinct mechanisms include 1) changing the distribution of intermolecular interactions without significantly changing the packing of molecules to introduce more facile slip planes; 2) changing packing feature into a flat layered structure so that more facile slip planes are introduced; 3) reducing the interlayer interaction energies and increasing the anisotropy. CONCLUSION Although the specific mechanisms for these five systems differ, all five hydrates are featured with more facile slip planes, lower packing efficiency, and lower density.
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Affiliation(s)
- Chenguang Wang
- Pharmaceutical Materials Science and Engineering Laboratory, Department of Pharmaceutics, College of Pharmacy, University of Minnesota, 9-127B Weaver-Densford Hall, 308 Harvard Street S.E, Minneapolis, MN, 55455, USA.,Evelo Biosciences, Cambridge, MA, 02139 , USA
| | - Changquan Calvin Sun
- Pharmaceutical Materials Science and Engineering Laboratory, Department of Pharmaceutics, College of Pharmacy, University of Minnesota, 9-127B Weaver-Densford Hall, 308 Harvard Street S.E, Minneapolis, MN, 55455, USA.
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15
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De A, Kathait M, Jain P, Guin M. DFT Investigation, Hirshfield Analysis and Molecular Docking of Cu(II) Complex of O‐Vanillin Based Ligand. ChemistrySelect 2022. [DOI: 10.1002/slct.202202884] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Anindita De
- Department of Chemistry and Biochemistry School of Basic Sciences and Research Sharda University Greater Noida 201310 India
| | - Ms.Anjali Kathait
- Department of Chemistry and Biochemistry School of Basic Sciences and Research Sharda University Greater Noida 201310 India
| | - Preeti Jain
- Department of Chemistry and Biochemistry School of Basic Sciences and Research Sharda University Greater Noida 201310 India
| | - Mridula Guin
- Department of Chemistry and Biochemistry School of Basic Sciences and Research Sharda University Greater Noida 201310 India
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16
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Chitra R, Choudhury R, Rajan RV, Sajan D, Kumar M. L-Histidine with nitric acid: A comparison of crystal structures and Hirshfeld surfaces analysis. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133550] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]
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17
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Synthesis, Structure and Photoluminescence Properties of Cd and Cd-Ln Pentafluorobenzoates with 2,2′:6′,2′-Terpyridine Derivatives. INORGANICS 2022. [DOI: 10.3390/inorganics10110194] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
Six new complexes [Cd(tpy)(pfb)2] (1, tpy = 2,2′:6′,2″-terpyridine), [Ln2Cd2(tpy)2(pfb)10] (Ln = Eu (2Eu), Tb (2Tb)), [Ln2Cd2(tbtpy)2(pfb)10]·2MeCN (Ln = Eu (3Eu), Tb (3Tb), tbtpy = 4,4′,4″-tri-tert-butyl-2,2′:6′,2″-terpyridine), [Eu2Cd2(tppz)(pfb)10]n (4, tppz = 2,3,5,6-tetra-(pyridin-2-yl)pyrazine) based on pentafluorobenzoic acid (Hpfb) have been prepared and investigated. The effect of tridentate ligands on geometry heterometallic scaffolds synthesized complexes is discussed. The supramolecular crystal structures of the new compounds are stabilized by π-π, C-F···π, C-H···O, C-H...F, F….F interactions. Non-covalent interactions have been studied using Hirschfeld surface analysis. The obtained compounds were characterized by single-crystal and powder X-ray diffraction, luminescence spectroscopy, IR spectroscopy, CHN analysis. Complexes 2Ln and 3Ln exhibit metal-centered photoluminescence, but the presence of ligand luminescence bands indicates incomplete energy transfer from the d-block to the lanthanide ion.
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18
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El Bakri Y, Musrat Kurbanova M, Ali Siddique S, Ahmad S, Goumri-Said S. One-pot synthesis, X-ray crystal structure, and identification of potential molecules against COVID-19 main protease through structure-guided modeling and simulation approach. ARAB J CHEM 2022; 15:104230. [PMID: 36124333 PMCID: PMC9476335 DOI: 10.1016/j.arabjc.2022.104230] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Accepted: 08/31/2022] [Indexed: 12/25/2022] Open
Abstract
Although antimicrobial resistance before the Covid-19 pandemic is a top priority for global public health, research is already ongoing on novel organic compounds with antimicrobial and antiviral properties in changing medical environments in connection with Covid 19. Thanks to the Biginelli reaction, which allows the synthesis of pyrimidine compounds, blockers of calcium channels, antibodies, antiviral, antimicrobial, anti-inflammatory, or antioxidant therapeutic compounds were investigated. In this paper, we aim to present Biginelli's synthesis, its therapeutic properties, and the structural-functional relationship in the test compounds that allows the synthesis of antimicrobial compounds. Both the DFT and TD-DFT computations of spectral data, molecular orbitals (HOMO, LUMO) analysis, and electrostatic potential (MEP) surfaces are carried out as an add-on to synthetic research. Hirshfeld surface analysis was also used to segregate the different intermolecular hydrogen bonds involved in the molecular packing strength. Natural Bond Orbital (NBO) investigation endorses the existence of intermolecular interactions mediated by lone pair, bonding, and anti-bonding orbitals. The dipole moment, linear polarizability, and first hyperpolarizabilities have been explored as molecular parameters. All findings based on DFT exhibit the best consistency with experimental findings, implying that synthesized molecules are highly stable. To better understand the binding mechanism of the SARS-CoV-2 Mpro, we performed molecular docking, molecular dynamics (MD) simulations, and binding free energy calculations.
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Affiliation(s)
- Youness El Bakri
- Department of Theoretical and Applied Chemistry, South Ural State University, Lenin prospect 76, Chelyabinsk 454080, Russian Federation,Corresponding authors
| | | | - Sabir Ali Siddique
- Center for Organic Chemistry, School of Chemistry, University of the Punjab, Lahore 54590, Pakistan
| | - Sajjad Ahmad
- Department of Health and Biological Sciences, Abasyn University, Peshawar 25000, Pakistan
| | - Souraya Goumri-Said
- College of Science, Physics department, Alfaisal University, Riyadh 11533, Saudi Arabia,Corresponding authors
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19
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Thangavel MK, Harrowfield J, Bailly C, Karmazin L, Stadler AM. Modulation of the structural information in shape-defined heterocyclic strands: the case of a (pyridine-hydrazone) 2pyrazine ligand. Dalton Trans 2022; 51:14107-14117. [PMID: 36043361 DOI: 10.1039/d2dt01684b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Metal ions (Ag+, Cd2+, Eu3+, Sm3+) and protons can, through coordination and protonation, modulate in three specific ways the structural information contained in the pyrazine-based heterocyclic strand L (obtained from 2,5-bis(methylhydrazino)pyrazine and 2 equivalents of 2-pyridinecarboxaldehyde), thus generating two linear rod-like conformations and a bent one. This conformational diversity is associated with a structural one that consists of two diprotonated forms (H2L(PF6)2 and H2L(CF3SO3)2), a polymeric architecture [AgL]n(CF3SO3)n, two rack-like complexes ([Eu2H2L3(CF3SO3)6](PF6)2 and [Sm2H2L3(CF3SO3)6](PF6)2) and a grid-like structure ([Cd4L4](CF3SO3)8).
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Affiliation(s)
- Muthu Kumar Thangavel
- Institut de Chimie, Université de Strasbourg, Strasbourg, France.,Institut de Science et d'Ingénierie Supramoléculaires (ISIS), UMR 7006, CNRS - Université de Strasbourg, 8 Allée Gaspard Monge, 67000 Strasbourg, France.
| | - Jack Harrowfield
- Institut de Science et d'Ingénierie Supramoléculaires (ISIS), UMR 7006, CNRS - Université de Strasbourg, 8 Allée Gaspard Monge, 67000 Strasbourg, France.
| | - Corinne Bailly
- Service de Radiocristallographie, Université de Strasbourg, 1 Rue Blaise Pascal, 67000 Strasbourg, France
| | - Lydia Karmazin
- Service de Radiocristallographie, Université de Strasbourg, 1 Rue Blaise Pascal, 67000 Strasbourg, France
| | - Adrian-Mihail Stadler
- Institut de Science et d'Ingénierie Supramoléculaires (ISIS), UMR 7006, CNRS - Université de Strasbourg, 8 Allée Gaspard Monge, 67000 Strasbourg, France. .,University of Strasbourg Institute for Advanced Study (USIAS), 5 Allée du Général Rouvillois, 67083 Strasbourg, France.,Institut für Nanotechnologie (INT), Karlsruhe Institut für Technologie (KIT), 76344 Eggenstein-Leopoldshafen, Germany
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20
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Etsè KS, Djidjolé Etsè K, Zaragoza G, Mouithys-Mickalad A. Structural description, IR, TGA, antiradical, HRP activity inhibition and molecular docking exploration of N-cyclohexyl-N-tosylformamide. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133731] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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21
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Guerah NEH, Zerrouki K, Benslama O, Daran JC, Bouacida S, Bouchene R. New polymorph for Cd(II) chloro‑bridged coordination polymer based on 3-aminopyrazin-2-carboxylic acid: Synthesis, structural characterization, Hirshfeld surface analysis, thermal properties and molecular docking study on the antifungal activity. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.132681] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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22
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Pal R, Jelsch C, Momma K, Grabowsky S. π-Hole bonding in a new co-crystal hydrate of gallic acid and pyrazine: static and dynamic charge density analysis. ACTA CRYSTALLOGRAPHICA SECTION B, STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS 2022; 78:231-246. [PMID: 35411861 PMCID: PMC9004022 DOI: 10.1107/s2052520622001457] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/02/2021] [Accepted: 02/07/2022] [Indexed: 06/14/2023]
Abstract
A new cocrystal hydrate of gallic acid with pyrazine (4GA, Py, 4H2O; GA4PyW4) was obtained and characterized by single crystal X-ray diffraction. In addition to structure determination, experimental charge density analysis was carried out in terms of Multipole Modelling (MP), X-ray wavefunction refinement (XWR) and maximum entropy method (MEM). As a part of XWR, the structural refinement via Hirshfeld atom refinement was carried out and resulted in O-H bond lengths close to values from neutron diffraction. A systematic comparison of molecular conformations and aromatic interactions in this new cocrystal hydrate was performed with other existing polymorphs of gallic acid. In GA4PyW4, the two symmetry-independent gallic acid molecules have a syn COOH orientation and form the common (COOH)2 dimeric synthon. The carboxyl C atom displays the characteristics of π-holes with electropositive regions above and below the molecular plane and engages in acceptor-donor interactions with oxygen atoms of acidic O-H groups and phenol groups of neighbouring gallic acid molecules. The signature of the π-hole was identified from experimental charge density analysis, both in static density maps in MP and XWR as well as dynamic density in MEM, but it cannot be pinned down to a specific atom-atom interaction. This study presents the first comparison between an XWR and a MEM experimental electron-density determination.
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Affiliation(s)
- Rumpa Pal
- Faculty of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan
- Institute of Inorganic Chemistry and Crystallography, Department 2 – Biology/Chemistry, University of Bremen, Leobener Str. 3, 28359 Bremen, Germany
| | | | - Koichi Momma
- National Museum of Nature and Science, 4-1-1 Amakubo, Tsukuba, Ibaraki, Japan
| | - Simon Grabowsky
- Institute of Inorganic Chemistry and Crystallography, Department 2 – Biology/Chemistry, University of Bremen, Leobener Str. 3, 28359 Bremen, Germany
- Department of Chemistry, Biochemistry and Pharmaceutical Sciences, University of Bern, Freiestrasse 3, 3012 Bern, Switzerland
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23
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Crystal structure, Hirshfeld, computational biomolecular investigations, and MTT assay studies of amino pyrimidine derivative as EGFR kinase domain inhibitor. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.132416] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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24
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Spodium bonds and metal–halogen···halogen–metal interactions in propagation of monomeric units to dimeric or polymeric architectures. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.132144] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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25
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Synthesis, Physicochemical, Thermal and Antioxidative Properties of Zn(II) Coordination Compounds with Pyrazole-Type Ligand. INORGANICS 2022. [DOI: 10.3390/inorganics10020020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023] Open
Abstract
The reactions of pyrazole derivative, i.e., ethyl-5-amino-1-methyl-1H-pyrazole-4-carboxylate (L) with zinc halogenides in methanolic solution and zinc nitrate and zinc acetate in acetonic solution are described. The formulae of synthesized compounds are ZnL2Cl2 (1), [ZnL2Br2] (2), ZnL2I2·0.5MeOH (3), [Zn(L)2(H2O)4](NO3)2 (4), and {ZnL(OAc)2}2 (5). Two complexes are obtained in form of single crystals: [ZnL2Br2] (2) and [Zn(L)2(H2O)4](NO3)2 (4). Their crystal and molecular structure were determined by single-crystal X-ray structure analysis. The FTIR spectra of compounds prove the complex formation with all five zinc salts. The complexes are characterized by conductometric and thermoanalytical measurements, and their antioxidative activity was also tested by the scavenging effect on the DPPH radical. Conductometric results, solvolytic stability, and antioxidative activity of the compounds are in correlation.
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26
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Benassi E, Vaganova T, Malykhin E, Fan H. How do electron donating substituents affect the electronic structure, molecular topology, vibrational properties and intra- and intermolecular interactions of polyhalogenated pyridines? Phys Chem Chem Phys 2022; 24:4002-4021. [PMID: 35103258 DOI: 10.1039/d1cp05956d] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
Seven polyhalogenated pyridine derivatives bearing an amino or a hydroxyl group, either at the ortho or para position, were studied using a combined experimental and computational approach. The presence of an electron donating substituent strongly impacted on the geometry, electronic structure, electrostatic properties, molecular topology and vibrational characteristics of these compounds compared to the corresponding polyhalogenated pyridines. In particular the attention was focused on changes in wavenumbers, force constants and intensity of the seven in-plane Ring Normal Modes (RNMs). Due to the nature and position of the substituents, intra- and intermolecular interactions also underwent dramatic modifications, as revealed using Natural Bond Orbital (NBO) analysis, Non-Covalent Interaction (NCI) analysis and Atom-In-Molecule (AIM) theory. Raman and FT-IR spectra of these seven compounds were also collected in solid phase and rationalised by the simulated spectra for hydrogen bonding and/or π-π stacking based homodimers. The present study provides a strategy not only for the vibrational characterisation for the individual compounds, but also for shedding light on the ways of molecular packing in the molecular crystals or cocrystals involving these compounds.
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Affiliation(s)
- Enrico Benassi
- Novosibirsk State University, Novosibirsk, 630090, Russia.
| | - Tamara Vaganova
- Vorozhtsov Novosibirsk Institute of Organic Chemistry SB RAS, Novosibirsk, 630090, Russia
| | - Evgenij Malykhin
- Vorozhtsov Novosibirsk Institute of Organic Chemistry SB RAS, Novosibirsk, 630090, Russia
| | - Haiyan Fan
- Department of Chemistry, School of Sciences and Humanities, Nazarbayev University Nazarbayev University, Nursultan, 010000, Kazakhstan
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27
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Bu FZ, Yu YM, Shen YL, Liu L, Yan CW, Wu ZY, Li YT. Cocrystallization-driven self-assembly with vanillic acid offers a new opportunity for surmounting fast and excessive absorption issues of antifungal drug 5-fluorocytosine: a combined theoretical and experimental research. CrystEngComm 2022. [DOI: 10.1039/d2ce00114d] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
The cocrystal of 5-fluorocytosine (FCY) with vanillic acid (VAA) was assembled via a cocrystallization technique, giving a novel understanding for conquering the dose-limited hepatotoxicity caused by the rapid and almost complete absorption of FCY.
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Affiliation(s)
- Fan-Zhi Bu
- School of Medicine and Pharmacy and College of Marine Life Science, Ocean University of China, Qingdao, Shandong 266003, PR China
| | - Yue-Ming Yu
- School of Medicine and Pharmacy and College of Marine Life Science, Ocean University of China, Qingdao, Shandong 266003, PR China
| | - Yu-Li Shen
- School of Medicine and Pharmacy and College of Marine Life Science, Ocean University of China, Qingdao, Shandong 266003, PR China
| | - Lu Liu
- School of Medicine and Pharmacy and College of Marine Life Science, Ocean University of China, Qingdao, Shandong 266003, PR China
| | - Cui-Wei Yan
- School of Medicine and Pharmacy and College of Marine Life Science, Ocean University of China, Qingdao, Shandong 266003, PR China
| | - Zhi-Yong Wu
- School of Medicine and Pharmacy and College of Marine Life Science, Ocean University of China, Qingdao, Shandong 266003, PR China
- Laboratory for Marine Drugs and Bioproducts, Qingdao National Laboratory for Marine Science and Technology, 266003, PR China
| | - Yan-Tuan Li
- School of Medicine and Pharmacy and College of Marine Life Science, Ocean University of China, Qingdao, Shandong 266003, PR China
- Laboratory for Marine Drugs and Bioproducts, Qingdao National Laboratory for Marine Science and Technology, 266003, PR China
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28
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Sperlich E, Kelling A, Kwesiga G, Schmidt B. Intermolecular interactions in the solid-state structures of isoflavones: the relationship between supramolecular structure, torsion angle, and macroscopic properties. CrystEngComm 2022. [DOI: 10.1039/d2ce00169a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The different macroscopic properties of closely related isoflavones were associated with the occurrence of intermolecular interactions and different torsion angles in the solid-state.
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Affiliation(s)
- Eric Sperlich
- Institut fuer Chemie, Universitaet Potsdam, Karl-Liebknecht-Straße 24-25, D-14476 Potsdam-Golm, Germany
| | - Alexandra Kelling
- Institut fuer Chemie, Universitaet Potsdam, Karl-Liebknecht-Straße 24-25, D-14476 Potsdam-Golm, Germany
| | - George Kwesiga
- Institut fuer Chemie, Universitaet Potsdam, Karl-Liebknecht-Straße 24-25, D-14476 Potsdam-Golm, Germany
| | - Bernd Schmidt
- Institut fuer Chemie, Universitaet Potsdam, Karl-Liebknecht-Straße 24-25, D-14476 Potsdam-Golm, Germany
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29
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Sallam HH, Mohammed YHI, Al-Ostoot FH, M. A. S, Khanum SA. Synthesis, crystal structure characterization, DFT calculations, Hirshfeld surface analysis and 3D energy frameworks of triazole pyridazine derivatives: Theoretical and experimental studies. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.131242] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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30
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Khamees HA, Madegowda M, Ananda S, Sangappa Y, Al-Ostoot FH, Abad N. Synthesis, molecular structure, DFT studies, in silico docking and molecular dynamics simulations of 2,6 dimethoxychalcone derivatives as BRD4 inhibitors. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.131032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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31
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Three new co-crystals of 2,3,5,6-tetramethyl pyrazin with different substituted aromatic compounds _ crystal structure, spectroscopy and Hirshfeld analysis. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130580] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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32
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Easy preparation of novel 3,3-dimethyl-3,4-dihydro-2H-1,2,4-benzothiadiazine 1,1-dioxide: Molecular structure, Hirshfeld surface, NCI analyses and molecular docking on AMPA receptors. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130435] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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33
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Sallam HH, Mohammed YHE, Al-Ostoot FH, Sridhar M, Khanum SA. Synthesis, structure analysis, DFT calculations, Hirshfeld surface studies, and energy frameworks of 6-Chloro-3-[(4-chloro-3-methylphenoxy)methyl][1,2,4]triazolo[4,3-b]pyridazine. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130282] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
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34
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Ai Q, Bhat V, Ryno SM, Jarolimek K, Sornberger P, Smith A, Haley MM, Anthony JE, Risko C. OCELOT: An infrastructure for data-driven research to discover and design crystalline organic semiconductors. J Chem Phys 2021; 154:174705. [PMID: 34241085 DOI: 10.1063/5.0048714] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
Abstract
Materials design and discovery are often hampered by the slow pace and materials and human costs associated with Edisonian trial-and-error screening approaches. Recent advances in computational power, theoretical methods, and data science techniques, however, are being manifest in a convergence of these tools to enable in silico materials discovery. Here, we present the development and deployment of computational materials data and data analytic approaches for crystalline organic semiconductors. The OCELOT (Organic Crystals in Electronic and Light-Oriented Technologies) infrastructure, consisting of a Python-based OCELOT application programming interface and OCELOT database, is designed to enable rapid materials exploration. The database contains a descriptor-based schema for high-throughput calculations that have been implemented on more than 56 000 experimental crystal structures derived from 47 000 distinct molecular structures. OCELOT is open-access and accessible via a web-user interface at https://oscar.as.uky.edu.
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Affiliation(s)
- Qianxiang Ai
- Department of Chemistry and Center for Applied Energy Research, University of Kentucky, Lexington, Kentucky 40506-0055, USA
| | - Vinayak Bhat
- Department of Chemistry and Center for Applied Energy Research, University of Kentucky, Lexington, Kentucky 40506-0055, USA
| | - Sean M Ryno
- Department of Chemistry and Center for Applied Energy Research, University of Kentucky, Lexington, Kentucky 40506-0055, USA
| | - Karol Jarolimek
- Department of Chemistry and Center for Applied Energy Research, University of Kentucky, Lexington, Kentucky 40506-0055, USA
| | - Parker Sornberger
- Department of Chemistry and Center for Applied Energy Research, University of Kentucky, Lexington, Kentucky 40506-0055, USA
| | - Andrew Smith
- Department of Chemistry and Center for Applied Energy Research, University of Kentucky, Lexington, Kentucky 40506-0055, USA
| | - Michael M Haley
- Department of Chemistry and Biochemistry, University of Oregon, Eugene, Oregon 97403-1253, USA
| | - John E Anthony
- Department of Chemistry and Center for Applied Energy Research, University of Kentucky, Lexington, Kentucky 40506-0055, USA
| | - Chad Risko
- Department of Chemistry and Center for Applied Energy Research, University of Kentucky, Lexington, Kentucky 40506-0055, USA
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Supramolecular construction of a cyclobutane ring system with four different substituents in the solid state. Commun Chem 2021; 4:60. [PMID: 36697559 PMCID: PMC9814370 DOI: 10.1038/s42004-021-00493-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Accepted: 03/16/2021] [Indexed: 01/28/2023] Open
Abstract
Methods to form cyclobutane rings by an intermolecular [2 + 2] cross-photoreaction (CPR) with four different substituents are rare. These reactions are typically performed in the liquid phase, involve multiple steps, and generate product mixtures. Here, we report a CPR that generates a cyclobutane ring with four different aryl substituents. The CPR occurs quantitatively, without side products, and without a need for product purification. Generally, we demonstrate how face-to-face stacking interactions of aromatic rings can be exploited in the process of cocrystallization and the field of crystal engineering to stack and align unsymmetrical alkenes in CPRs to afford chiral cyclobutanes with up to four different aryl groups via binary cocrystals. Overall, we expect the process herein to be useful to generate chiral carbon scaffolds, which is important given the presence of four-membered carbocyclic rings as structural units in biological compounds and materials science.
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36
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Rasmussen M, Näther C, Bensch W. The Coordination Polymer Cr(en)
2
As
2
VO
7
Consisting of Alternating VO
4
Tetrahedra and As
2
O
5
Handles Decorated by Cr
3+
Centered Complexes. Z Anorg Allg Chem 2021. [DOI: 10.1002/zaac.202100035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Maren Rasmussen
- Institute of Inorganic Chemistry Christian-Albrechts-University of Kiel Max-Eyth-Str. 2 24118 Kiel Germany
| | - Christian Näther
- Institute of Inorganic Chemistry Christian-Albrechts-University of Kiel Max-Eyth-Str. 2 24118 Kiel Germany
| | - Wolfgang Bensch
- Institute of Inorganic Chemistry Christian-Albrechts-University of Kiel Max-Eyth-Str. 2 24118 Kiel Germany
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37
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Abad N, Sallam HH, Al-Ostoot FH, Khamees HA, Al-horaibi SA, A SM, Khanum SA, Madegowda M, Hafi ME, Mague JT, Essassi EM, Ramli Y. Synthesis, crystal structure, DFT calculations, Hirshfeld surface analysis, energy frameworks, molecular dynamics and docking studies of novel isoxazolequinoxaline derivative (IZQ) as anti-cancer drug. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130004] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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38
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Savastano M. Words in supramolecular chemistry: the ineffable advances of polyiodide chemistry. Dalton Trans 2021; 50:1142-1165. [PMID: 33496303 DOI: 10.1039/d0dt04091f] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Polyiodide chemistry has a rich history deeply intertwined with the development of supramolecular chemistry. Technological and theoretical interest in polyiodides has not diminished in the last decade, quite the contrary; yet the advances this perspective intends to cover are muddled by the involution of supramolecular vocabulary, preventing their unbiased discussion. Herein we discuss the pressing necessity of ordering the current babel of novel - and less so - supramolecular terms. Shared decisions at the community level might be required to shape the field into a harmonious body of knowledge, dominated by concepts rather than words. Secondary, σ-hole and halogen bonding schools of thought are all addressed here, together with their respective impact on the field. Then, on the basis of a shared vocabulary, a discussion of polyiodide chemistry is presented, starting with a revisited view of triiodide. The contemporary fields of supramolecular caging and polyiodide networks are then discussed, with emphasis on how the terms we choose to use deeply affect scientific progress.
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Affiliation(s)
- Matteo Savastano
- Department of Chemistry "Ugo Schiff", University of Florence, via della Lastruccia 3, 50019, Sesto Fiorentino, Italy.
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39
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Mahesha, Raveesha T, Hema M, Pampa K, Chandrashekara P, Mantelingu K, Demappa T, Lokanath N. Analysis of supramolecular self-assembly of two chromene derivatives: Synthesis, crystal structure, Hirshfeld surface, quantum computational and molecular docking studies. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129104] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
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Multiresolution non-covalent interaction analysis for ligand–protein promolecular electron density distributions. Theor Chem Acc 2021. [DOI: 10.1007/s00214-020-02705-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Menon PK, Krishnaraj K, Anabha E, Devaky K, Thomas SP. Synthesis, crystal structure and electron density analysis of a sulfanyl 2-pyridone analogue: Tautomeric preference and conformation locking by S···O chalcogen bonding. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.128798] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Raičević V, Radulović N, Jovanović L, Rodić M, Kuzminac I, Jakimov D, Wrodnigg T, Knedel T, Janiak C, Sakač M. Ferrocenylmethylation of estrone and estradiol: Structure, electrochemistry, and antiproliferative activity of new ferrocene–steroid conjugates. Appl Organomet Chem 2020. [DOI: 10.1002/aoc.5889] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Vidak Raičević
- Department of Chemistry, Biochemistry and Environmental Protection, Faculty of Sciences University of Novi Sad Trg Dositeja Obradovića 3 Novi Sad 21000 Serbia
| | - Niko Radulović
- Department of Chemistry, Faculty of Sciences and Mathematics University of Niš Višegradska 33 Niš 18000 Serbia
| | - Ljiljana Jovanović
- Department of Chemistry, Biochemistry and Environmental Protection, Faculty of Sciences University of Novi Sad Trg Dositeja Obradovića 3 Novi Sad 21000 Serbia
| | - Marko Rodić
- Department of Chemistry, Biochemistry and Environmental Protection, Faculty of Sciences University of Novi Sad Trg Dositeja Obradovića 3 Novi Sad 21000 Serbia
| | - Ivana Kuzminac
- Department of Chemistry, Biochemistry and Environmental Protection, Faculty of Sciences University of Novi Sad Trg Dositeja Obradovića 3 Novi Sad 21000 Serbia
| | - Dimitar Jakimov
- Oncology Institute of Vojvodina Put doktora Goldmana 4 Sremska Kamenica 21204 Serbia
| | - Tanja Wrodnigg
- Glycogroup Institute of Chemistry and Technology of Biobased Systems, Graz University of Technology Stremayrgasse 9 Graz A‐8010 Austria
| | - Tim‐Oliver Knedel
- Institute for Inorganic Chemistry and Structural Chemistry Heinrich‐Heine‐Universität Düsseldorf, Universitätsstraße 1 Düsseldorf D‐40225 Germany
| | - Christoph Janiak
- Institute for Inorganic Chemistry and Structural Chemistry Heinrich‐Heine‐Universität Düsseldorf, Universitätsstraße 1 Düsseldorf D‐40225 Germany
| | - Marija Sakač
- Department of Chemistry, Biochemistry and Environmental Protection, Faculty of Sciences University of Novi Sad Trg Dositeja Obradovića 3 Novi Sad 21000 Serbia
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Thorvaldsen S, Hössjer O. Using statistical methods to model the fine-tuning of molecular machines and systems. J Theor Biol 2020; 501:110352. [PMID: 32505827 DOI: 10.1016/j.jtbi.2020.110352] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2019] [Revised: 05/26/2020] [Accepted: 05/27/2020] [Indexed: 10/24/2022]
Abstract
Fine-tuning has received much attention in physics, and it states that the fundamental constants of physics are finely tuned to precise values for a rich chemistry and life permittance. It has not yet been applied in a broad manner to molecular biology. However, in this paper we argue that biological systems present fine-tuning at different levels, e.g. functional proteins, complex biochemical machines in living cells, and cellular networks. This paper describes molecular fine-tuning, how it can be used in biology, and how it challenges conventional Darwinian thinking. We also discuss the statistical methods underpinning fine-tuning and present a framework for such analysis.
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Affiliation(s)
| | - Ola Hössjer
- Stockholm University, Dep. of Mathematics, Division of Mathematical Statistics, Sweden.
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Caracelli I, Zukerman-Schpector J, Kwong HC, Tiekink ERT. Methyl 3-[(1-benzyl-4-phenyl-1 H-1,2,3-triazol-5-yl)formamido]-propano-ate: crystal structure, Hirshfeld surface analysis and computational chemistry. Acta Crystallogr E Crystallogr Commun 2020; 76:1051-1056. [PMID: 32695451 PMCID: PMC7336772 DOI: 10.1107/s2056989020007380] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2020] [Accepted: 06/03/2020] [Indexed: 11/10/2022]
Abstract
The title compound, C20H20N4O3, is constructed about a tri-substituted 1,2,3-triazole ring, with the substituent at one C atom flanked by the C and N atoms being a substituted amide group, and with the adjacent C and N atoms bearing phenyl and benzyl groups, respectively; the dihedral angle between the pendant phenyl rings is 81.17 (12)°, indicative of an almost orthogonal disposition. In the crystal, pairwise amide-N-H⋯O(carbon-yl) hydrogen bonds lead to a centrosymmetric dimer incorporating methyl-ene-C-H⋯π(benzene) inter-actions. The dimers are linked into a supra-molecular layer in the ab plane via methyl-ene-C-H⋯N(azo) and benzene-C-H⋯O(amide) inter-actions; the layers stack along the c-axis direction without directional inter-actions between them. The above-mentioned inter-molecular contacts are apparent in the analysis of the calculated Hirshfeld surface, which also provides evidence for short inter-layer H⋯C contacts with a significant dispersion energy contribution.
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Affiliation(s)
- Ignez Caracelli
- Departmento de Física, Universidade Federal de São Carlos, 13565-905 São Carlos, SP, Brazil
| | - Julio Zukerman-Schpector
- Laboratório de Cristalografia, Esterodinâmica e Modelagem Molecular, Departamento de Química, Universidade Federal de São Carlos, 13565-905 São Carlos, SP, Brazil
| | - Huey Chong Kwong
- Research Centre for Crystalline Materials, School of Science and Technology, Sunway University, 47500 Bandar Sunway, Selangor Darul Ehsan, Malaysia
| | - Edward R. T. Tiekink
- Research Centre for Crystalline Materials, School of Science and Technology, Sunway University, 47500 Bandar Sunway, Selangor Darul Ehsan, Malaysia
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Dallasta Pedroso S, Caracelli I, Zukerman-Schpector J, Soto-Monsalve M, De Almeida Santos RH, Correia CRD, Llanes Garcia AL, Kwong HC, Tiekink ERT. 1-Ethyl 2-methyl 3,4-bis-(acet-yloxy)pyrrolidine-1,2-di-carboxyl-ate: crystal structure, Hirshfeld surface analysis and computational chemistry. Acta Crystallogr E Crystallogr Commun 2020; 76:967-972. [PMID: 32523774 PMCID: PMC7273984 DOI: 10.1107/s205698902000701x] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2020] [Accepted: 05/24/2020] [Indexed: 11/10/2022]
Abstract
The title compound, C13H19NO8, is based on a tetra-substituted pyrrolidine ring, which has a twisted conformation about the central C-C bond; the Cm-Ca-Ca-Cme torsion angle is 38.26 (15)° [m = methyl-carboxyl-ate, a = acet-yloxy and me = methyl-ene]. While the N-bound ethyl-carboxyl-ate group occupies an equatorial position, the remaining substituents occupy axial positions. In the crystal, supra-molecular double-layers are formed by weak methyl- and methyl-ene-C-H⋯O(carbon-yl) inter-actions involving all four carbonyl-O atoms. The two-dimensional arrays stack along the c axis without directional inter-actions between them. The Hirshfeld surface is dominated by H⋯H (55.7%) and H⋯C/C⋯H (37.0%) contacts; H⋯H contacts are noted in the inter-double-layer region. The inter-action energy calculations point to the importance of the dispersion energy term in the stabilization of the crystal.
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Affiliation(s)
- Sofia Dallasta Pedroso
- Laboratório de Cristalografia, Esterodinâmica e Modelagem Molecular, Departamento de Química, Universidade Federal de São Carlos, 13565-905 São Carlos, SP, Brazil
| | - Ignez Caracelli
- Departmento de Física, Universidade Federal de São Carlos, 13565-905 São Carlos, SP, Brazil
| | - Julio Zukerman-Schpector
- Laboratório de Cristalografia, Esterodinâmica e Modelagem Molecular, Departamento de Química, Universidade Federal de São Carlos, 13565-905 São Carlos, SP, Brazil
| | - Monica Soto-Monsalve
- Instituto de Química de São Carlos, Universidade de São Paulo, São Carlos, SP, Brazil
| | | | - Carlos Roque D. Correia
- Instituto de Química, Universidade Estadual de Campinas, UNICAMP, CP 6154, CEP 13084-917 Campinas, Brazil
| | - Ariel L. Llanes Garcia
- Instituto de Química, Universidade Estadual de Campinas, UNICAMP, CP 6154, CEP 13084-917 Campinas, Brazil
| | - Huey Chong Kwong
- Research Centre for Crystalline Materials, School of Science and Technology, Sunway University, 47500 Bandar Sunway, Selangor Darul Ehsan, Malaysia
| | - Edward R. T. Tiekink
- Research Centre for Crystalline Materials, School of Science and Technology, Sunway University, 47500 Bandar Sunway, Selangor Darul Ehsan, Malaysia
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Ernst M, Genoni A, Macchi P. Analysis of crystal field effects and interactions using X-ray restrained ELMOs. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.127975] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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48
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Setifi Z, Kwong HC, Tiekink ERT, Maris T, Setifi F. fac-Tri-aqua-(1,10-phenanthroline-κ 2 N, N')(sulfato-κ O)cobalt(II): crystal structure, Hirshfeld surface analysis and computational study. ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS 2020; 76:835-840. [PMID: 32523750 PMCID: PMC7273987 DOI: 10.1107/s2056989020006271] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/06/2020] [Accepted: 05/08/2020] [Indexed: 11/10/2022]
Abstract
The CoII atom in the title complex is octahedrally coordinated within an N2O4 donor set defined by two N-atom donors of the 1,10-phenanthroline ligand, sulfate-O and three aqua-O atoms, the latter occupying an octahedral face. In the crystal, supramolecular layers parallel to (110) are sustained by aqua-O—H⋯O(sulfate) hydrogen bonding. The CoII atom in the title complex, [Co(SO4)(C12H8N2)(H2O)3] (or C12H14CoN2O7S), is octahedrally coordinated within a cis-N2O4 donor set defined by the chelating N-donors of the 1,10-phenanthroline ligand, sulfate-O and three aqua-O atoms, the latter occupying an octahedral face. In the crystal, supramolecular layers lying parallel to (110) are sustained by aqua-O—H⋯O(sulfate) hydrogen bonding. The layers stack along the c-axis direction with the closest directional interaction between them being a weak phenanthroline-C—H⋯O(sulfate) contact. There are four significant types of contact contributing to the calculated Hirshfeld surface: at 44.5%, the major contribution comes from O—H⋯O contacts followed by H⋯H (28.6%), H⋯C/C⋯H (19.5%) and C⋯C (5.7%) contacts. The dominance of the electrostatic potential force in the molecular packing is also evident in the calculated energy frameworks. The title complex is isostructural with its manganese, zinc and cadmium containing analogues and isomeric with its mer-triaqua analogue.
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Affiliation(s)
- Zouaoui Setifi
- Département de Technologie, Faculté de Technologie, Université 20 Août 1955-Skikda, BP 26, Route d'El-Hadaiek, Skikda 21000, Algeria.,Laboratoire de Chimie, Ingénierie Moléculaire et Nanostructures (LCIMN), Université Ferhat Abbas Sétif 1, Sétif 19000, Algeria
| | - Huey Chong Kwong
- Research Centre for Crystalline Materials, School of Science and Technology, Sunway University, 47500 Bandar Sunway, Selangor Darul Ehsan, Malaysia
| | - Edward R T Tiekink
- Research Centre for Crystalline Materials, School of Science and Technology, Sunway University, 47500 Bandar Sunway, Selangor Darul Ehsan, Malaysia
| | - Thierry Maris
- Department of Chemistry, Université de Montréal, 2900 Edouard-Montpetit Blvd, Montreal, Quebec, H3T1J4, Canada
| | - Fatima Setifi
- Laboratoire de Chimie, Ingénierie Moléculaire et Nanostructures (LCIMN), Université Ferhat Abbas Sétif 1, Sétif 19000, Algeria
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Khamees HA, Revanna BN, Madegowda M, Sebastian J, Haruvegowda DB, Kumar S. Structural, Quantum Chemical and Spectroscopic Investigations on Photophysical Properties of Fluorescent Saccharide Sensor: Theoretical and Experimental Studies. ChemistrySelect 2020. [DOI: 10.1002/slct.202000966] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Hussien A. Khamees
- Department of Studies in PhysicsManasagangotriUniversity of Mysore Mysuru 570006 Karnataka India
| | - Bhavya N. Revanna
- Department of Studies in PhysicsManasagangotriUniversity of Mysore Mysuru 570006 Karnataka India
| | - Mahendra Madegowda
- Department of Studies in PhysicsManasagangotriUniversity of Mysore Mysuru 570006 Karnataka India
| | - Jeyaseelan Sebastian
- Department of PhysicsSt. Philomena's College (Autonomous) Mysore 570015 Karnataka India
| | - Doreswamy B. Haruvegowda
- Department of Studies in PhysicsSJB Institute of Technology, Kengeri Bengaluru 560060 Karnataka India
| | - Shamantha Kumar
- Department of Studies in PhysicsSJB Institute of Technology, Kengeri Bengaluru 560060 Karnataka India
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Foschi F, Synnatschke K, Grieger S, Zhang WS, Wadepohl H, Schröder RR, Backes C, Gade LH. Luminogens for Aggregation-Induced Emission via Titanium-Mediated Double Nucleophilic Addition to 2,5-Dialkynylpyridines: Formation and Transformation of the Emitting Aggregates. Chemistry 2020; 26:4269-4280. [PMID: 31912577 PMCID: PMC7187342 DOI: 10.1002/chem.201905611] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2019] [Indexed: 12/12/2022]
Abstract
New luminogens for aggregation‐induced emission (AIE), which are characterized by a branched cross‐conjugated 2,6‐bis(1,2,2‐triarylvinyl)pyridine motif, have been synthesized exploiting the one‐pot Ti‐mediated tetraarylation of 2,6‐bis(arylethynyl)pyridines. Thin layer solid‐state emitters were prepared by spin‐coating of the luminogens, while AIE‐colloidal dispersions were investigated in terms of optical density and scattering behaviour. This has given insight into particle size distributions, time evolution of the aggregation and the influence of different functionalization patterns on the luminescence of molecular aggregates. In particular, a combination of extinction spectroscopy and dynamic light scattering is being proposed as a powerful method for investigating the dynamic aggregation process in AIE‐type colloids.
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Affiliation(s)
- Francesco Foschi
- Institute of Inorganic Chemistry, Heidelberg University, Im Neuenheimer Feld 270, 69120, Heidelberg, Germany
| | - Kevin Synnatschke
- Applied Physical Chemistry, Heidelberg University, Im Neuenheimer Feld 253, 69120, Heidelberg, Germany
| | - Sebastian Grieger
- Applied Physical Chemistry, Heidelberg University, Im Neuenheimer Feld 253, 69120, Heidelberg, Germany
| | - Wen-Shan Zhang
- Centre for Advanced Materials, Heidelberg University, Im Neuenheimer Feld 225, 69120, Heidelberg, Germany
| | - Hubert Wadepohl
- Institute of Inorganic Chemistry, Heidelberg University, Im Neuenheimer Feld 270, 69120, Heidelberg, Germany
| | - Rasmus R Schröder
- Centre for Advanced Materials, Heidelberg University, Im Neuenheimer Feld 225, 69120, Heidelberg, Germany
| | - Claudia Backes
- Applied Physical Chemistry, Heidelberg University, Im Neuenheimer Feld 253, 69120, Heidelberg, Germany
| | - Lutz H Gade
- Institute of Inorganic Chemistry, Heidelberg University, Im Neuenheimer Feld 270, 69120, Heidelberg, Germany
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