1
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García-Viada A, Carretero JC, Adrio J, Rodríguez N. Insights into the mechanism of 3d transition-metal-catalyzed directed C(sp 3)-H bond functionalization reactions. Chem Soc Rev 2025; 54:4353-4390. [PMID: 40111381 DOI: 10.1039/d4cs00657g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/22/2025]
Abstract
The growing interest in the catalytic activity of earth-abundant 3d transition-metals has led to the development of new and more sustainable methods for C-H bond functionalization reactions. However, this is an emerging field which involves considerable mechanistic complexity as the mode of action of 3d transition metals differs markedly from the well-studied mechanisms of precious metals. In this review, we present an overview of the research efforts in Ni-, Cu-, Fe- and Co-catalyzed directed C(sp3)-H bond functionalization reactions, covering design principles and mechanistic discussions, along with potential applications and limitations. To conclude, the unresolved challenges and future viewpoints are highlighted. We aspire for this review to serve as a relevant and valuable reference for researchers in this swiftly progressing field, helping to inspire the development of more original and innovative strategies.
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Affiliation(s)
- Andrés García-Viada
- Dpto. de Química Orgánica, Facultad de Ciencias, Universidad Autónoma de Madrid (UAM), Cantoblanco, 28049, Madrid, Spain.
| | - Juan C Carretero
- Dpto. de Química Orgánica, Facultad de Ciencias, Universidad Autónoma de Madrid (UAM), Cantoblanco, 28049, Madrid, Spain.
- Institute for Advanced Research in Chemical Sciences (IAdChem), UAM, 28049 Madrid, Spain
- Center for Innovation in Advanced Chemistry (ORFEO-CINQA), Madrid, Spain
| | - Javier Adrio
- Dpto. de Química Orgánica, Facultad de Ciencias, Universidad Autónoma de Madrid (UAM), Cantoblanco, 28049, Madrid, Spain.
- Institute for Advanced Research in Chemical Sciences (IAdChem), UAM, 28049 Madrid, Spain
- Center for Innovation in Advanced Chemistry (ORFEO-CINQA), Madrid, Spain
| | - Nuria Rodríguez
- Dpto. de Química Orgánica, Facultad de Ciencias, Universidad Autónoma de Madrid (UAM), Cantoblanco, 28049, Madrid, Spain.
- Institute for Advanced Research in Chemical Sciences (IAdChem), UAM, 28049 Madrid, Spain
- Center for Innovation in Advanced Chemistry (ORFEO-CINQA), Madrid, Spain
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2
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Khan A, Dawar P, De S. Thiourea compounds as multifaceted bioactive agents in medicinal chemistry. Bioorg Chem 2025; 158:108319. [PMID: 40058221 DOI: 10.1016/j.bioorg.2025.108319] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2024] [Revised: 02/13/2025] [Accepted: 02/24/2025] [Indexed: 03/19/2025]
Abstract
Microbial resistance (MR) and cancer are global healthcare pitfalls that have caused millions of deaths and pose a significant pharmaceutical challenge, with clinical cases increasing. Thioureas are preferred structures in medicinal chemistry, chemosensors, and organic synthesis platforms. In fact, thiourea (TU) moieties serve as a common framework for several medications and bioactive substances, demonstrating a wide range of therapeutic and pharmacological accomplishments. The integration of the thiourea moiety into a diverse range of organic molecules has resulted in very flexible compounds with widespread uses in medicinal chemistry. Moreover, for over a century, TU and its metal complexes have been characterized for their biological activity. Finally, we provide an assessment and future outlook of different organo-thiourea derivatives, from the very beginning to the most recent discoveries in medicinal activity.
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Affiliation(s)
- Adeeba Khan
- Department of Chemistry, Organic Chemistry Lab, Manipal University Jaipur, Jaipur, Rajasthan 303007, India
| | - Palak Dawar
- Department of Chemistry, Organic Chemistry Lab, Manipal University Jaipur, Jaipur, Rajasthan 303007, India
| | - Suranjan De
- Department of Chemistry, Organic Chemistry Lab, Manipal University Jaipur, Jaipur, Rajasthan 303007, India.
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3
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Zhang G, Xu Z, Han B, Ji Y, Li S, Zhou M, Cao M, Yu X, Liu L. Iron-Catalyzed Site-Selective Bromination of Benzylic C(sp 3)-H Bonds. Org Lett 2025; 27:3720-3724. [PMID: 40169399 DOI: 10.1021/acs.orglett.5c00864] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/03/2025]
Abstract
An iron-catalyzed chemo- and site-selective benzylic C-H bromination has been described. The practical approach uses the C-H substrate as the limiting reagent and commercially available iron(II) bromide at a loading of 1 mol % as the catalyst without the involvement of any extrinsic ligand. The simple and mild reaction can be readily scaled up to gram quantity with good functional group tolerance, offering a convenient route for the late-stage diversification of complex bioactive natural products and pharmaceutical molecules through sequential benzylic C-H bromination.
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Affiliation(s)
- Guangyi Zhang
- School of Chemistry and Chemical Engineering, Shandong University, Jinan 250100, China
| | - Zihao Xu
- School of Chemistry and Chemical Engineering, Shandong University, Jinan 250100, China
| | - Bing Han
- School of Pharmaceutical Sciences and Institute of Materia Medica, Shandong First Medical University, Jinan 250117, China
| | - Yuge Ji
- School of Pharmaceutical Sciences and Institute of Materia Medica, Shandong First Medical University, Jinan 250117, China
| | - Shengying Li
- State Key Laboratory of Microbial Technology, Shandong University, Qingdao, Shandong 266237, China
| | - Meijuan Zhou
- SDU-ANU Joint Science College, Shandong University, Weihai 264209, China
| | - Min Cao
- School of Pharmaceutical Sciences and Institute of Materia Medica, Shandong First Medical University, Jinan 250117, China
| | - Xiaolong Yu
- SDU-ANU Joint Science College, Shandong University, Weihai 264209, China
| | - Lei Liu
- School of Chemistry and Chemical Engineering, Shandong University, Jinan 250100, China
- Shenzhen Research Institute of Shandong University, Shenzhen 518057, China
- School of Pharmaceutical Sciences and Institute of Materia Medica, Shandong First Medical University, Jinan 250117, China
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4
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Tang LN, Miao JC, Chen M. Recent advances in photoinitiated Pd-catalyzed desaturation and Heck-type reactions via 1,5-hydrogen atom transfer. Chem Commun (Camb) 2025; 61:4621-4629. [PMID: 40009017 DOI: 10.1039/d4cc06349j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/27/2025]
Abstract
Photoredox-catalyzed 1,5-hydrogen atom transfer has rapidly developed, which has made remarkable achievements in the activation of remote C(sp3)-H bonds and successfully addressed the selectivity issues faced by transition metal catalysis. In recent years, the discovery of hybrid Pd radical intermediates and their application in photoredox-catalyzed 1,5-hydrogen atom transfer has gained considerable importance, which obviated the necessity of an additional photosensitizer. In light of the significant role of alkenes in organic synthesis and hybrid Pd radical intermediates, this review aims to summarize efforts on photoinduced Pd-catalyzed radical relay Heck and desaturation reactions via 1,5-hydrogen atom transfer, briefly discussing the design, selectivity, reaction mechanisms and future research prospects.
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Affiliation(s)
- Lu-Ning Tang
- Jiangsu Key Laboratory of Advanced Catalytic Materials and Technology, School of Petrochemical Engineering, Chang-zhou University, Changzhou, 213164, China.
| | - Jia-Cheng Miao
- Jiangsu Key Laboratory of Advanced Catalytic Materials and Technology, School of Petrochemical Engineering, Chang-zhou University, Changzhou, 213164, China.
| | - Ming Chen
- Jiangsu Key Laboratory of Advanced Catalytic Materials and Technology, School of Petrochemical Engineering, Chang-zhou University, Changzhou, 213164, China.
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5
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Wu Y, Zhu B, Fan H, Bernard H, Hutton CA. Late-Stage Pd(II)-Catalyzed C(sp 3)-H Functionalization of Peptides Directed by a Removable, Backbone-Inserted Amidoxime Ether. Angew Chem Int Ed Engl 2025; 64:e202423979. [PMID: 39757129 DOI: 10.1002/anie.202423979] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2024] [Revised: 01/02/2025] [Accepted: 01/03/2025] [Indexed: 01/07/2025]
Abstract
Palladium(II)-catalyzed C-H functionalization has attracted considerable attention as a pathway to late-stage modification of peptides. Herein, we report the Pd-catalyzed C(sp3)-H arylation of peptides directed by an amidoxime ether, which can be easily incorporated into peptides at any amide bond. Site- and stereoselective arylation of peptides has been achieved, including unprecedented functionalization of internal residues of native peptides. Removal of the amidoxime ether was achieved to generate the parent amide and facilitate a traceless C-H functionalization process.
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Affiliation(s)
- Yuezhou Wu
- School of Chemistry, The University of Melbourne, Victoria, 3010, Australia
| | - Beichen Zhu
- School of Chemistry, The University of Melbourne, Victoria, 3010, Australia
| | - Haoyang Fan
- School of Chemistry, The University of Melbourne, Victoria, 3010, Australia
| | - Hugo Bernard
- School of Chemistry, The University of Melbourne, Victoria, 3010, Australia
| | - Craig A Hutton
- School of Chemistry, The University of Melbourne, Victoria, 3010, Australia
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6
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Kundu SK, Bandyopadhyay A, Sarkar R. Tryptophan-specific modification and diversification of peptides and proteins. Org Biomol Chem 2025; 23:1773-1793. [PMID: 39831339 DOI: 10.1039/d4ob02015d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2025]
Abstract
In spite of being the second-lowest abundant proteinogenic amino acid, approximately 90% of proteins contain at least one tryptophan residue. Hence, the chemoselective functionalization of tryptophan residue can provide access to site-selective bioconjugation of almost all known proteins. With the increase in the utility of bioconjugated proteins and peptides as drugs and therapeutic agents, the development of smart protocols to fabricate and modulate biomolecules has flourished. This review provides a comprehensive summary of the latest advances in tryptophan-specific modification and diversification of peptides and proteins that exhibit significant applications in proteomics, protein engineering, living cell imaging, drug discovery, etc. The article also highlights literature gaps and new opportunities for the sake of future innovation in the field.
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Affiliation(s)
- Sudipta K Kundu
- Department of Chemistry, Muragachha Government College, Nadia 741154, West Bengal, India.
- Department of Higher Education, Government of West Bengal, India
| | - Ayan Bandyopadhyay
- Department of Higher Education, Government of West Bengal, India
- Department of Chemistry, Chapra Government College, Nadia 741123, West Bengal, India
| | - Rajib Sarkar
- Department of Chemistry, Muragachha Government College, Nadia 741154, West Bengal, India.
- Department of Higher Education, Government of West Bengal, India
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7
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Li BT, Ding XX, Dong L. Palladium(II)-Catalyzed Site-Selective C(sp 3)-H Alkenylation of Oligopeptides. Org Lett 2024; 26:9455-9459. [PMID: 39447064 DOI: 10.1021/acs.orglett.4c03365] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2024]
Abstract
An innovative palladium-catalyzed alkenylation of peptides and vinyl iodides has been developed. This method does not require the introduction of a directing group and uses carboxylic acid groups as endogenous directing groups. It is noteworthy that two key building blocks for the ilamycins and CXCR7 modulators were prepared using our methodology. In addition, the free carboxylic acid residue can be linked to a variety of other compounds, providing a novel approach to the synthesis of peptide drugs in the future.
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Affiliation(s)
- Bing-Tong Li
- Key Laboratory of Drug-Targeting and Drug Delivery System of the Education Ministry, Sichuan Research Center for Drug Precision Industrial Technology, West China School of Pharmacy, Sichuan University, Chengdu 610041, China
| | - Xing-Xing Ding
- Key Laboratory of Drug-Targeting and Drug Delivery System of the Education Ministry, Sichuan Research Center for Drug Precision Industrial Technology, West China School of Pharmacy, Sichuan University, Chengdu 610041, China
| | - Lin Dong
- Key Laboratory of Drug-Targeting and Drug Delivery System of the Education Ministry, Sichuan Research Center for Drug Precision Industrial Technology, West China School of Pharmacy, Sichuan University, Chengdu 610041, China
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8
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Bag R, Kar M, Sharma NK. Ag(I)-Mediated Site-Selective C(sp 2)-H Chalcogenation of Tryptophan-Peptides with Dichalcogenides at Room Temperature. J Org Chem 2024; 89:14981-15002. [PMID: 39373108 DOI: 10.1021/acs.joc.4c01730] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/08/2024]
Abstract
This report presents a silver-mediated site-selective chalcogenation of tryptophan-containing peptides with various dichalcogenides (disulfides/diselenides) at room temperature in good to excellent yields. The significant features include broad substrate scope, functional group diversity, late-stage modification of drug molecules (Dopamine and Levodopa), and various valuable postsynthetic transformations under mild conditions.
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Affiliation(s)
- Raghunath Bag
- National Institute of Science Education and Research-Bhubaneswar, Jatni-Campus, Bhubaneswar 752050, India
- Homi Bhabha National Institute, Anushaktinagar, Mumbai 400094, India
| | - Malobika Kar
- National Institute of Science Education and Research-Bhubaneswar, Jatni-Campus, Bhubaneswar 752050, India
- Homi Bhabha National Institute, Anushaktinagar, Mumbai 400094, India
| | - Nagendra K Sharma
- National Institute of Science Education and Research-Bhubaneswar, Jatni-Campus, Bhubaneswar 752050, India
- Homi Bhabha National Institute, Anushaktinagar, Mumbai 400094, India
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9
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Baidya R, Khamarui S, Molla SA, Pratihar P, Das P, Pati TK, Maiti DK. Ru II-Catalyzed C-H Activated Diverse Cyclization with Transformation of Substrate-DG to Functional Groups: Synthesis of Functionalized Indoles and Indenones. J Org Chem 2024; 89:14183-14196. [PMID: 39283992 DOI: 10.1021/acs.joc.4c01588] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/05/2024]
Abstract
We present an elegant and efficient method for Ru(II)-catalyzed C-H activation, followed by a diverse range of intermolecular cross-dehydrogenative coupling reactions. This process is facilitated by an intrinsic directing group (DG) and includes the in situ transformation of the DG into common and useful functional groups. Notably, this method avoids the installation and deinstallation of the directing group. Our approach enables the selective functionalization of benzimidate, coupled with the cyclization of o-alkynyl-aniline, resulting in the high-yield synthesis of diverse compounds such as indoles, and indenones. The sequential formation of C-N, C-C, and C-O bonds, followed by hydrolysis, underscores the versatile in situ transformation of the directing group. This work not only broadens the synthetic toolbox for constructing complex heterocyclic structures but also highlights the potential for sustainable and selective synthesis of valuable compounds.
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Affiliation(s)
- Ramlal Baidya
- Department of Chemistry, University of Calcutta, 92, A. P. C. Road, Kolkata 700009, India
| | - Saikat Khamarui
- Department of Chemistry, Government General Degree College, Kalna-1, Burdwan 713405, India
| | - Sabir A Molla
- Department of Chemistry, University of Calcutta, 92, A. P. C. Road, Kolkata 700009, India
| | - Pintu Pratihar
- Department of Chemistry, University of Calcutta, 92, A. P. C. Road, Kolkata 700009, India
| | - Prasenjit Das
- Department of Chemistry, University of Calcutta, 92, A. P. C. Road, Kolkata 700009, India
| | - Tanmay K Pati
- Department of Chemistry, Rensselaer Polytechnic Institute, Troy, New York 12180-3522, United States
| | - Dilip K Maiti
- Department of Chemistry, University of Calcutta, 92, A. P. C. Road, Kolkata 700009, India
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10
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Chatterjee J, Bandyopadhyay A, Pattabiraman M, Sarkar R. Discovery and development of tyrosine-click (Y-click) reaction for the site-selective labelling of proteins. Chem Commun (Camb) 2024; 60:8978-8996. [PMID: 38913168 DOI: 10.1039/d4cc01997k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/25/2024]
Abstract
With the versatile utility of bio-conjugated peptides and proteins in the fields of agriculture, food, cosmetics and pharmaceutical industry, the design of smart protocols to conjugate and modulate biomolecules becomes highly desirable. During this process, the most important consideration for biochemists is the retention of configurational integrity of the biomolecules. Moreover, this type of bioconjugation of peptide and protein becomes frivolous if the reaction is not performed with precise amino acid residues. Hence, chemo-selective, as well as site-selective reactions, that are biocompatible and possess an appropriate level of reactivity are necessary. Based on click chemistry, there are so many tyrosine (Y) conjugation strategies, such as sulfur-fluoride exchange (SuFEx), sulfur-triazole exchange (SuTEx), coupling with π-allyl palladium complexes, diazonium salts, diazodicarboxyamide-based reagents etc. Among these techniques, diazodicarboxyamide-based Y-conjugation, which is commonly known as the "tyrosine-click (Y-click) reaction", has met the expectations of synthetic and biochemists for the tyrosine-specific functionalization of biomolecules. Over the past one and a half decades, significant progress has been made in the classical organic synthesis approach, as well as its biochemical, photochemical, and electrochemical variants. Despite such progress and increasing importance, the Y-click reaction has not been reviewed to document variations in its methodology, applications, and broad utility. The present article aims to provide a summary of the approaches for the modulation of biomolecules at the hotspot of tyrosine residue by employing the Y-click reaction. The article also highlights its application for the mapping of proteins, imaging of living cells, and in the fields of analytical and medicinal chemistry.
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Affiliation(s)
| | - Ayan Bandyopadhyay
- Department of Chemistry, Chapra Government College, Nadia-741123, West Bengal, India
- Department of Higher Education, Government of West Bengal, India.
| | | | - Rajib Sarkar
- Department of Higher Education, Government of West Bengal, India.
- Department of Chemistry, Muragachha Government College, Nadia-741154, West Bengal, India
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11
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Kharat ND, Naharwal S, Panda SS, Bajaj K, Sakhuja R. Iridium-catalyzed diacylmethylation of tyrosine and its peptides with sulfoxonium ylides. Chem Commun (Camb) 2024; 60:7622-7625. [PMID: 38957144 DOI: 10.1039/d4cc02204a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/04/2024]
Abstract
Pyridyloxy-directed Ir(III)-catalyzed diacylmethylation of protected tyrosines was achieved with alkyl and (hetero)aryl sulfoxonium ylides, furnishing tyrosine-based unnatural amino acids in good yields. Furthermore, the late stage exemplification of the strategy was successfully accomplished in tyrosine-containing dipeptides, tripeptides and tetrapeptides in moderate yields. This methodology is distinguished by its site-selectivity, tolerance of sensitive functional groups, scalability, and retention of the chiral configuration for tyrosine motifs.
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Affiliation(s)
- Narendra Dinkar Kharat
- Department of Chemistry, Birla Institute of Technology and Science, Pilani, Rajasthan 333031, India.
| | - Sushma Naharwal
- Department of Chemistry, Birla Institute of Technology and Science, Pilani, Rajasthan 333031, India.
| | - Siva S Panda
- Department of Chemistry and Biochemistry & Department of Biochemistry and Molecular Biology, Augusta University, Augusta, GA 30912, USA
| | - Kiran Bajaj
- Department of Chemistry, Amity University, Noida, Uttar Pradesh, India.
| | - Rajeev Sakhuja
- Department of Chemistry, Birla Institute of Technology and Science, Pilani, Rajasthan 333031, India.
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12
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Yi LN, Zhao T, Bu J, Long J, Yang Q. Directed C(sp 3)-H Arylation of Free α-Aminophosphonates: Dual Models Exploration via Palladium Catalysis. Org Lett 2024; 26:4132-4136. [PMID: 38717283 DOI: 10.1021/acs.orglett.4c01322] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/18/2024]
Abstract
In this report, we present the dual activation models for transient directing group-directed and amino-self-directed Pd-catalyzed α-aminophosphonate side-chain C(sp3)-H arylation. Both strategies showed facile, efficient, and single regioselectivity in the reaction between free α-aminophosphonates and aryl iodides. Furthermore, the modification of amino and late-stage functionalization of the C(sp3)-P bond from products indicates potential applications for α-aminophosphonates.
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Affiliation(s)
- Li Na Yi
- Key Laboratory of General Chemistry of the National Ethnic Affairs Commission, College of Chemistry and Environment, Southwest Minzu University, Chengdu 610041, China
| | - Tao Zhao
- Key Laboratory of General Chemistry of the National Ethnic Affairs Commission, College of Chemistry and Environment, Southwest Minzu University, Chengdu 610041, China
| | - Jinghan Bu
- Key Laboratory of General Chemistry of the National Ethnic Affairs Commission, College of Chemistry and Environment, Southwest Minzu University, Chengdu 610041, China
| | - Jiedi Long
- Key Laboratory of General Chemistry of the National Ethnic Affairs Commission, College of Chemistry and Environment, Southwest Minzu University, Chengdu 610041, China
| | - Qiang Yang
- Key Laboratory of General Chemistry of the National Ethnic Affairs Commission, College of Chemistry and Environment, Southwest Minzu University, Chengdu 610041, China
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13
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Li Y, Meng Z, Zhu X, Hao XQ, Song MP. Cu(II)-Mediated Sulfonylation of (Hetero)arenes with TosMIC Using Monodentate Directing Groups. J Org Chem 2024; 89:3894-3906. [PMID: 38385785 DOI: 10.1021/acs.joc.3c02730] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/23/2024]
Abstract
Monodentate chelation-assisted direct ortho-C-H sulfonylation of (hetero)arenes using TosMIC as the novel sulfonylating reagent has been developed. A broad range of substrates, including indolines, indoles, 2-phenylpyridines, and others were well tolerated to afford the corresponding products in moderate to good yields. Mechanistic studies revealed that the sulfonyl radical might be involved. Inspired by the above discovery, preliminary para-C-H sulfonylation of naphthalene substrate was also successfully realized. The current protocol featured with cheap metal catalysis, good functional group compatibility, and operational convenience.
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Affiliation(s)
- Yigao Li
- College of Chemistry, Zhengzhou University, No. 100 of Science Road, Zhengzhou 450001, P. R. China
| | - Zhuang Meng
- College of Chemistry, Zhengzhou University, No. 100 of Science Road, Zhengzhou 450001, P. R. China
| | - Xinju Zhu
- College of Chemistry, Zhengzhou University, No. 100 of Science Road, Zhengzhou 450001, P. R. China
| | - Xin-Qi Hao
- College of Chemistry, Zhengzhou University, No. 100 of Science Road, Zhengzhou 450001, P. R. China
| | - Mao-Ping Song
- College of Chemistry, Zhengzhou University, No. 100 of Science Road, Zhengzhou 450001, P. R. China
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14
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Ding XX, Ren BQ, Li BT, Pang ZJ, Xu YJ, Dong L. Pd(II)-Catalyzed β-C(sp 3)-H Alkynylation of Alanine in Di- and Tripeptides with Asn as an Endogenous Directing Group. J Org Chem 2024; 89:3390-3402. [PMID: 38377557 DOI: 10.1021/acs.joc.3c02823] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/22/2024]
Abstract
The introduction of alkyne moieties into peptides remains in demand as it represents a promising approach for further structural diversification of peptides. Herein, we describe the Pd(II)-catalyzed C(sp3)-H alkynylation of Ala-Asn-embedded di- and tripeptides using Asn as the endogenous lead group. In addition, a key building block for the glycopeptide Tyc4PG-14 and Tyc4PG-15 was produced by our methodology.
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Affiliation(s)
- Xing-Xing Ding
- Key Laboratory of Drug-Targeting and Drug Delivery System of the Education Ministry, Sichuan Research Center for Drug Precision Industrial Technology, West China School of Pharmacy, Sichuan University, Chengdu 610041, China
- College of Chemistry and Material Science, Sichuan Normal University, Chengdu, Sichuan 610066, China
| | - Bo-Quan Ren
- College of Chemistry and Material Science, Sichuan Normal University, Chengdu, Sichuan 610066, China
| | - Bing-Tong Li
- Key Laboratory of Drug-Targeting and Drug Delivery System of the Education Ministry, Sichuan Research Center for Drug Precision Industrial Technology, West China School of Pharmacy, Sichuan University, Chengdu 610041, China
| | - Zhao-Jiong Pang
- Key Laboratory of Drug-Targeting and Drug Delivery System of the Education Ministry, Sichuan Research Center for Drug Precision Industrial Technology, West China School of Pharmacy, Sichuan University, Chengdu 610041, China
| | - Yan-Jun Xu
- College of Chemistry and Material Science, Sichuan Normal University, Chengdu, Sichuan 610066, China
| | - Lin Dong
- Key Laboratory of Drug-Targeting and Drug Delivery System of the Education Ministry, Sichuan Research Center for Drug Precision Industrial Technology, West China School of Pharmacy, Sichuan University, Chengdu 610041, China
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15
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Huo T, Zhao X, Cheng Z, Wei J, Zhu M, Dou X, Jiao N. Late-stage modification of bioactive compounds: Improving druggability through efficient molecular editing. Acta Pharm Sin B 2024; 14:1030-1076. [PMID: 38487004 PMCID: PMC10935128 DOI: 10.1016/j.apsb.2023.11.021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Revised: 10/14/2023] [Accepted: 11/13/2023] [Indexed: 03/17/2024] Open
Abstract
Synthetic chemistry plays an indispensable role in drug discovery, contributing to hit compounds identification, lead compounds optimization, candidate drugs preparation, and so on. As Nobel Prize laureate James Black emphasized, "the most fruitful basis for the discovery of a new drug is to start with an old drug"1. Late-stage modification or functionalization of drugs, natural products and bioactive compounds have garnered significant interest due to its ability to introduce diverse elements into bioactive compounds promptly. Such modifications alter the chemical space and physiochemical properties of these compounds, ultimately influencing their potency and druggability. To enrich a toolbox of chemical modification methods for drug discovery, this review focuses on the incorporation of halogen, oxygen, and nitrogen-the ubiquitous elements in pharmacophore components of the marketed drugs-through late-stage modification in recent two decades, and discusses the state and challenges faced in these fields. We also emphasize that increasing cooperation between chemists and pharmacists may be conducive to the rapid discovery of new activities of the functionalized molecules. Ultimately, we hope this review would serve as a valuable resource, facilitating the application of late-stage modification in the construction of novel molecules and inspiring innovative concepts for designing and building new drugs.
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Affiliation(s)
- Tongyu Huo
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China
| | - Xinyi Zhao
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China
| | - Zengrui Cheng
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China
| | - Jialiang Wei
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China
- Changping Laboratory, Beijing 102206, China
| | - Minghui Zhu
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China
| | - Xiaodong Dou
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China
| | - Ning Jiao
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China
- Changping Laboratory, Beijing 102206, China
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, East China Normal University, Shanghai 200062, China
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16
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Bandyopadhyay A, Biswas P, Kundu SK, Sarkar R. Electrochemistry-enabled residue-specific modification of peptides and proteins. Org Biomol Chem 2024; 22:1085-1101. [PMID: 38231504 DOI: 10.1039/d3ob01857a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2024]
Abstract
Selective chemical reactions at precise amino acid residues of peptides and proteins have become an exploding field of research in the last few decades. With the emerging utility of bioconjugated peptides and proteins as drug leads and therapeutic agents, the design of smart protocols to modulate and conjugate biomolecules has become necessary. During this modification, the most important concern of biochemists is to keep intact the structural integrity of the biomolecules. Hence, a soft and selective biocompatible reaction environment is necessary. Electrochemistry, a mild and elegant tunable reaction platform to synthesize complex molecules while avoiding harsh and toxic chemicals, can provide such a reaction condition. However, this strategy is yet to be fully exploited in the field of selective modification of polypeptides. With this possibility, the use of electrochemistry as a reaction toolbox in peptide and protein chemistry is flourishing day by day. Unfortunately, there is no suitable review article summarizing the residue-specific modification of biomolecules. The present review provides a comprehensive summary of the latest manifested electrochemical approaches for the modulation of five redox-active amino acid residues, namely cysteine, tyrosine, tryptophan, histidine and methionine, found in peptides and proteins. The article also highlights the incredible potential of electrochemistry for the regio- as well as chemoselective bioconjugation strategy of biomolecules.
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Affiliation(s)
- Ayan Bandyopadhyay
- Department of Chemistry, Chapra Government College, Nadia-741123, West Bengal, India
| | - Pranay Biswas
- Department of Physics, Dinabandhu Mahavidyalaya, 24 Parganas (N), 743235, West Bengal, India
| | - Sudipta K Kundu
- Department of Chemistry, Muragachha Government College, Nadia-741154, West Bengal, India.
| | - Rajib Sarkar
- Department of Chemistry, Muragachha Government College, Nadia-741154, West Bengal, India.
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17
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Mohite SB, Mane MV, Bera M, Karpoormath R. Palladium-Catalyzed Regiodivergent C-H Olefination of Imidazo[1,2a]pyridine Carboxamide and Unactivated Alkenes. Chemistry 2023:e202302759. [PMID: 37735937 DOI: 10.1002/chem.202302759] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2023] [Revised: 09/21/2023] [Accepted: 09/21/2023] [Indexed: 09/23/2023]
Abstract
Despite remarkable successes in linear and branched vinyl (hetero) arene synthesis, regiodivergent C-H olefination with a single catalytic system has remained underdeveloped. Overcoming this limitation, a Pd/MPAA-catalyzed regiodivergent C-H olefination of imidazo[1,2a] pyridine carboxamides with unactivated terminal alkenes to generate branched and linear olefinated products depending upon the electronic nature of alkenes is reported herein. Moreover, this protocol can be applied for C-H deuteriation of the corresponding heteroarenes with D2 O as deuterium source. Preliminary experimental studies combined with computational investigations (DFT studies) suggest that regiodivergent olefination can be controlled by olefin insertion and β-hydride elimination steps.
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Affiliation(s)
- Sachin Balaso Mohite
- Department of Pharmaceutical Chemistry, Discipline of Pharmaceutical Sciences, College of Health Sciences, University of KwaZulu-Natal, Westville, Durban, 4000, South Africa
| | - Manoj V Mane
- Centre for Nano and Material Sciences, Jain (Deemed-to-be University), Jain Global Campus, Kanakapura, Bangalore, Karnataka, 562112, India
| | - Milan Bera
- Photocatalysis & Synthetic Methodology Lab (PSML), Amity Institute of Click Chemistry Research & Studies (AICCRS), Amity University, Noida, 201303, India
| | - Rajshekhar Karpoormath
- Department of Pharmaceutical Chemistry, Discipline of Pharmaceutical Sciences, College of Health Sciences, University of KwaZulu-Natal, Westville, Durban, 4000, South Africa
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18
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Nanjo T, Matsumoto A, Oshita T, Takemoto Y. Synthesis of Chlorinated Oligopeptides via γ- and δ-Selective Hydrogen Atom Transfer Enabled by the N-Chloropeptide Strategy. J Am Chem Soc 2023; 145:19067-19075. [PMID: 37594470 DOI: 10.1021/jacs.3c06931] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/19/2023]
Abstract
The introduction of a chlorine atom could potentially endow peptide derivatives with notable bioactivity and applicability. However, despite considerable recent progress in C(sp3)-H functionalization chemistry, a general method for the site-selective chlorination of inert aliphatic C-H bonds in peptides still remains elusive. Herein, we report a site-selective C(sp3)-H chlorination of oligopeptides based on an N-chloropeptide strategy. N-chloropeptides, which are easily prepared from the corresponding native oligopeptides, are smoothly degraded in the presence of an appropriate copper catalyst, and a subsequent 1,5-hydrogen atom transfer affords γ- or δ-chlorinated peptides in excellent yield. A wide variety of amino acid residues can thus be site-selectively chlorinated in a predictable manner. This method hence enables the efficient synthesis of otherwise less accessible, chlorine-containing peptide fragments of natural peptides. We moreover demonstrate here the successful estimation of the stereochemistry of the chlorinated carbon atom in aquimarin A. Furthermore, we reveal that side-chain-chlorinated peptides can serve as highly useful substructures with a fine balance between stability and reactivity, which renders them promising targets for synthetic and medicinal applications.
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Affiliation(s)
- Takeshi Nanjo
- Graduate School of Pharmaceutical Sciences, Kyoto University, Yoshida, Sakyo-ku, Kyoto 606-8501, Japan
| | - Ayaka Matsumoto
- Graduate School of Pharmaceutical Sciences, Kyoto University, Yoshida, Sakyo-ku, Kyoto 606-8501, Japan
| | - Takuma Oshita
- Graduate School of Pharmaceutical Sciences, Kyoto University, Yoshida, Sakyo-ku, Kyoto 606-8501, Japan
| | - Yoshiji Takemoto
- Graduate School of Pharmaceutical Sciences, Kyoto University, Yoshida, Sakyo-ku, Kyoto 606-8501, Japan
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19
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Wang P, Liu J, Zhu X, Yan Z, Yan J, Jiang J, Fu M, Ge J, Zhu Q, Zheng Y. Modular synthesis of clickable peptides via late-stage maleimidation on C(7)-H tryptophan. Nat Commun 2023; 14:3973. [PMID: 37407547 DOI: 10.1038/s41467-023-39703-y] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2022] [Accepted: 06/20/2023] [Indexed: 07/07/2023] Open
Abstract
Cyclic peptides have attracted tremendous attention in the pharmaceutical industry owing to their excellent cell penetrability, stability, thermostability, and drug-like properties. However, the currently available facile methodologies for creating such peptides are rather limited. Herein, we report an efficient and direct peptide cyclization via rhodium(III)-catalyzed C(7)-H maleimidation. Notably, this catalytical system has excellent regioselectivity and high tolerance of functional groups which enable late-stage cyclization of peptides. This architecture of cyclic peptides exhibits higher bioactivity than its parent linear peptides. Moreover, the Trp-substituted maleimide displays excellent reactivity toward Michael addition, indicating its potential as a click functional group for applications in chemical biology and medicinal chemistry. As a proof of principle, RGD-GFLG-DOX, which is a peptide-drug-conjugate, is constructed and it displays a strong binding affinity and high antiproliferative activity toward integrin-αvβ3 overexpressed cancer cell lines. The proposed strategy for rapid preparation of stapled peptides would be a robust tool for creating peptide-drug conjugates.
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Affiliation(s)
- Peng Wang
- Key Laboratory of Bioorganic Synthesis of Zhejiang Province, College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou, 310014, China
| | - Jiang Liu
- Key Laboratory of Bioorganic Synthesis of Zhejiang Province, College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou, 310014, China
| | - Xiaomei Zhu
- Key Laboratory of Bioorganic Synthesis of Zhejiang Province, College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou, 310014, China
| | - Zhengqing Yan
- Key Laboratory of Bioorganic Synthesis of Zhejiang Province, College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou, 310014, China
| | - Jiahui Yan
- Key Laboratory of Bioorganic Synthesis of Zhejiang Province, College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou, 310014, China
| | - Jitong Jiang
- Key Laboratory of Bioorganic Synthesis of Zhejiang Province, College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou, 310014, China
| | - Manlin Fu
- Key Laboratory of Bioorganic Synthesis of Zhejiang Province, College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou, 310014, China
| | - Jingyan Ge
- Key Laboratory of Bioorganic Synthesis of Zhejiang Province, College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou, 310014, China
| | - Qing Zhu
- Key Laboratory of Bioorganic Synthesis of Zhejiang Province, College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou, 310014, China.
| | - Yuguo Zheng
- Key Laboratory of Bioorganic Synthesis of Zhejiang Province, College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou, 310014, China
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20
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Song J, Torigoe T, Kuninobu Y. Decatungstate-Catalyzed C(sp 3)-H Alkylation of a Val Residue Proximal to the N-Terminus Controlled by an Electrostatic Interaction. Org Lett 2023; 25:3708-3712. [PMID: 37184355 DOI: 10.1021/acs.orglett.3c01154] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
The decatungstate photocatalyst [W10O32]4- efficiently promoted the C(sp3)-H alkylation of the trifluoroacetic acid salt of valine methyl ester (H-Val-OMe·TFA) with electron-deficient alkenes under UV irradiation. The electrostatic interaction between the cationic ammonium group (+NH3) of the main chain and anionic [W10O32]4- played an important role in this reaction. The influence of various protected amino acids in the C(sp3)-H alkylation was investigated as the model reaction for the alkylation of Val-containing peptides. The introduction of an alkyne moiety into Val through this alkylation was successful, and successive copper-catalyzed azide-alkyne cycloaddition (CuAAC) was demonstrated. The C(sp3)-H bond of a Val residue located at the second from the N-terminus was also successfully converted. C(sp3)-H alkylation of oligopeptides containing two Val residues selectively proceeded proximally to the N-terminus.
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Affiliation(s)
- Jizhou Song
- Department of Interdisciplinary Engineering Sciences, Interdisciplinary Graduate School of Engineering Sciences, Kyushu University, 6-1 Kasugakoen, Kasuga-shi, Fukuoka 816-8580 Japan
| | - Takeru Torigoe
- Institute for Materials Chemistry and Engineering, Kyushu University, 6-1 Kasugakoen, Kasuga-shi, Fukuoka 816-8580, Japan
- Department of Interdisciplinary Engineering Sciences, Interdisciplinary Graduate School of Engineering Sciences, Kyushu University, 6-1 Kasugakoen, Kasuga-shi, Fukuoka 816-8580 Japan
| | - Yoichiro Kuninobu
- Department of Interdisciplinary Engineering Sciences, Interdisciplinary Graduate School of Engineering Sciences, Kyushu University, 6-1 Kasugakoen, Kasuga-shi, Fukuoka 816-8580 Japan
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21
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Peng P, Zhong Y, Zhou C, Tao Y, Li D, Lu Q. Unlocking the Nucleophilicity of Strong Alkyl C-H Bonds via Cu/Cr Catalysis. ACS CENTRAL SCIENCE 2023; 9:756-762. [PMID: 37122460 PMCID: PMC10141608 DOI: 10.1021/acscentsci.2c01389] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/21/2022] [Indexed: 05/03/2023]
Abstract
Direct functionalization of inert C-H bonds is one of the most attractive yet challenging strategies for constructing molecules in organic chemistry. Herein, we disclose an unprecedented and Earth abundant Cu/Cr catalytic system in which unreactive alkyl C-H bonds are transformed into nucleophilic alkyl-Cr(III) species at room temperature, enabling carbonyl addition reactions with strong alkyl C-H bonds. Various aryl alkyl alcohols are furnished under mild reaction conditions even on a gram scale. Moreover, this new radical-to-polar crossover approach is further applied to the 1,1-difunctionalization of aldehydes with alkanes and different nucleophiles. Mechanistic investigations reveal that the aldehyde not only acts as a reactant but also serves as a photosensitizer to recycle the Cu and Cr catalysts.
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Affiliation(s)
- Pan Peng
- The
Institute for Advanced Studies (IAS), Wuhan
University, Wuhan 430072, P. R. China
| | - Yifan Zhong
- The
Institute for Advanced Studies (IAS), Wuhan
University, Wuhan 430072, P. R. China
| | - Cong Zhou
- The
Institute for Advanced Studies (IAS), Wuhan
University, Wuhan 430072, P. R. China
| | - Yongsheng Tao
- The
Institute for Advanced Studies (IAS), Wuhan
University, Wuhan 430072, P. R. China
| | - Dandan Li
- Key
Laboratory of Micro-Nano Materials for Energy Storage and Conversion
of Henan Province, Institute of Surface Micro and Nano Materials,
College of Chemical and Materials Engineering, Xuchang University, Henan 461000, P. R. China
| | - Qingquan Lu
- The
Institute for Advanced Studies (IAS), Wuhan
University, Wuhan 430072, P. R. China
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22
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Cao Y, Zhou L, Fang Z, Zou Z, Zhao J, Zuo X, Li G. Application of functional peptides in the electrochemical and optical biosensing of cancer biomarkers. Chem Commun (Camb) 2023; 59:3383-3398. [PMID: 36808189 DOI: 10.1039/d2cc06824a] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Early screening and diagnosis are the most effective ways to prevent the occurrence and progression of cancers, thus many biosensing strategies have been developed to achieve economic, rapid, and effective detection of various cancer biomarkers. Recently, functional peptides have been gaining increasing attention in cancer-related biosensing due to their advantageous features of a simple structure, ease of synthesis and modification, high stability, and good biorecognition, self-assembly and antifouling capabilities. Functional peptides can not only act as recognition ligands or enzyme substrates for the selective identification of different cancer biomarkers but also function as interfacial materials or self-assembly units to improve the biosensing performances. In this review, we summarize the recent advances in functional peptide-based biosensing of cancer biomarkers according to the used techniques and the roles of peptides. Particular attention is focused on the use of electrochemical and optical techniques, both of which are the most commonly used techniques in the field of biosensing. The challenges and promising prospects of functional peptide-based biosensors in clinical diagnosis are also discussed.
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Affiliation(s)
- Yue Cao
- Center for Molecular Recognition and Biosensing, Shanghai Engineering Research Center of Organ Repair, School of Life Sciences, Shanghai University, Shanghai, 200444, P. R. China.
| | - Liang Zhou
- Center for Molecular Recognition and Biosensing, Shanghai Engineering Research Center of Organ Repair, School of Life Sciences, Shanghai University, Shanghai, 200444, P. R. China.
- Institute of Molecular Medicine, Shanghai Key Laboratory for Nucleic Acid Chemistry and Nanomedicine, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200127, China.
| | - Zhikai Fang
- Center for Molecular Recognition and Biosensing, Shanghai Engineering Research Center of Organ Repair, School of Life Sciences, Shanghai University, Shanghai, 200444, P. R. China.
- Institute of Molecular Medicine, Shanghai Key Laboratory for Nucleic Acid Chemistry and Nanomedicine, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200127, China.
| | - Zihan Zou
- Center for Molecular Recognition and Biosensing, Shanghai Engineering Research Center of Organ Repair, School of Life Sciences, Shanghai University, Shanghai, 200444, P. R. China.
| | - Jing Zhao
- Center for Molecular Recognition and Biosensing, Shanghai Engineering Research Center of Organ Repair, School of Life Sciences, Shanghai University, Shanghai, 200444, P. R. China.
| | - Xiaolei Zuo
- Institute of Molecular Medicine, Shanghai Key Laboratory for Nucleic Acid Chemistry and Nanomedicine, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200127, China.
| | - Genxi Li
- Center for Molecular Recognition and Biosensing, Shanghai Engineering Research Center of Organ Repair, School of Life Sciences, Shanghai University, Shanghai, 200444, P. R. China.
- State Key Laboratory of Analytical Chemistry for Life Science, School of Life Sciences, Nanjing University, Nanjing 210023, P. R. China.
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23
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Feng Y, Wang J, Yang J, Chen F, Zhang Z, Ke C, Lin J, Lin H. Native Amino Group Directed Site-Selective ε-C(sp 2)-H Iodination of Primary Amines. Org Lett 2023; 25:1348-1352. [PMID: 36825798 DOI: 10.1021/acs.orglett.2c04288] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/25/2023]
Abstract
Selective remote C-H activating amines using unmodified NH2 as a native directing group demonstrate compelling synthetic utilities. The 3-arylpropan-1-amine moiety is present in many drugs and candidates in clinical trials. Selective iodination of 3-arylpropan-1-amines on remote aryl rings gives valuable intermediates for modifying bioactive molecules and synthesizing quinolones. Here we report the first palladium-catalyzed selective ε-C(sp2)-H iodination of free 3-arylpropan-1-amines via a seven-membered palladacycle.
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Affiliation(s)
- Yueyao Feng
- Biomedical Research Center of South China, College of Life Sciences, Fujian Normal University, Fuzhou 350117, China
| | - Jie Wang
- Biomedical Research Center of South China, College of Life Sciences, Fujian Normal University, Fuzhou 350117, China
| | - Jie Yang
- Biomedical Research Center of South China, College of Life Sciences, Fujian Normal University, Fuzhou 350117, China
| | - Fengyuan Chen
- School of Pharmacy, Fujian Medical University, Fuzhou 350122, China
| | - Zemin Zhang
- School of Pharmacy, Fujian Medical University, Fuzhou 350122, China
| | - Chongrong Ke
- National and Local United Engineering Research Center of Industrial Microbiology and Fermentation Technology, College of Life Sciences, Fujian Normal University, Fuzhou 350117, China
| | - Jin Lin
- School of Pharmacy, Fujian Medical University, Fuzhou 350122, China
| | - Hua Lin
- Biomedical Research Center of South China, College of Life Sciences, Fujian Normal University, Fuzhou 350117, China
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24
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Karipal Padinjare Veedu D, Connal LA, Malins LR. Tunable Electrochemical Peptide Modifications: Unlocking New Levels of Orthogonality for Side-Chain Functionalization. Angew Chem Int Ed Engl 2023; 62:e202215470. [PMID: 36336657 PMCID: PMC10107541 DOI: 10.1002/anie.202215470] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2022] [Revised: 11/02/2022] [Accepted: 11/03/2022] [Indexed: 11/09/2022]
Abstract
Electrochemical transformations provide enticing opportunities for programmable, residue-specific peptide modifications. Herein, we harness the potential of amidic side-chains as underutilized handles for late-stage modification through the development of an electroauxiliary-assisted oxidation of glutamine residues within unprotected peptides. Glutamine building blocks bearing electroactive side-chain N,S-acetals are incorporated into peptides using standard Fmoc-SPPS. Anodic oxidation of the electroauxiliary in the presence of diverse alcohol nucleophiles enables the installation of high-value N,O-acetal functionalities. Proof-of-principle for an electrochemical peptide stapling protocol, as well as the functionalization of dynorphin B, an endogenous opioid peptide, demonstrates the applicability of the method to intricate peptide systems. Finally, the site-selective and tunable electrochemical modification of a peptide bearing two discretely oxidizable sites is achieved.
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Affiliation(s)
- Dhanya Karipal Padinjare Veedu
- Research School of ChemistryAustralian National UniversityCanberraACT 2601Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein ScienceAustralian National UniversityCanberraACT 2601Australia
| | - Luke A. Connal
- Research School of ChemistryAustralian National UniversityCanberraACT 2601Australia
| | - Lara R. Malins
- Research School of ChemistryAustralian National UniversityCanberraACT 2601Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein ScienceAustralian National UniversityCanberraACT 2601Australia
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25
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Li J, Sun J, Zhang X, Zhang R, Wang Q, Wang L, Zhang L, Xie X, Li C, Zhou Y, Wang J, Xiao G, Bai F, Liu H. Synthesis of maleimide-braced peptide macrocycles and their potential anti-SARS-CoV-2 mechanisms. Chem Commun (Camb) 2023; 59:868-871. [PMID: 36546610 DOI: 10.1039/d2cc06371a] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Macrocycles often exhibit good biological properties and potential druggability, which lead to versatile applications in the pharmaceutical industry. Herein, we report a highly efficient and practical methodology for the functionalization and macrocyclization of Trp and Trp-containing peptides via Pd(II)-catalyzed C-H alkenylation at the Trp C4 position. This method provides direct access to C4 maleimide-decorated Trp-containing peptidomimetics and maleimide-braced 17- to 30-membered peptide macrocycles. In particular, these unique macrocycles revealed low micro- to sub-micromolar EC50 values with promising anti-SARS-CoV-2 activities. Further explorations with computational methodologies and experimental validations indicated that these macrocycles exert antiviral effects through binding with the N protein of SARS-CoV-2.
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Affiliation(s)
- Jian Li
- School of Chinese Materia Medica, Nanjing University of Chinese Medicine, 138 Xianlin Avenue, Nanjing, 210023, China. .,State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zu Chong Zhi Road, Shanghai, 201203, China
| | - Jina Sun
- State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zu Chong Zhi Road, Shanghai, 201203, China.,University of Chinese Academy of Sciences, No. 19A Yuquan Road, Beijing, 100049, China
| | - Xianglei Zhang
- Shanghai Institute for Advanced Immunochemical Studies and School of Life Science and Technology, ShanghaiTech University, Shanghai, 201210, China.
| | - Ruxue Zhang
- State Key Laboratory of Virology, Wuhan Institute of Virology, Center for Biosafety Mega-Science, Chinese Academy of Sciences, Wuhan, 430071, China.
| | - Qian Wang
- School of Chinese Materia Medica, Nanjing University of Chinese Medicine, 138 Xianlin Avenue, Nanjing, 210023, China. .,State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zu Chong Zhi Road, Shanghai, 201203, China
| | - Lin Wang
- Shanghai Institute for Advanced Immunochemical Studies and School of Life Science and Technology, ShanghaiTech University, Shanghai, 201210, China.
| | - Leike Zhang
- State Key Laboratory of Virology, Wuhan Institute of Virology, Center for Biosafety Mega-Science, Chinese Academy of Sciences, Wuhan, 430071, China.
| | - Xiong Xie
- State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zu Chong Zhi Road, Shanghai, 201203, China.,University of Chinese Academy of Sciences, No. 19A Yuquan Road, Beijing, 100049, China
| | - Chunpu Li
- State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zu Chong Zhi Road, Shanghai, 201203, China.,University of Chinese Academy of Sciences, No. 19A Yuquan Road, Beijing, 100049, China
| | - Yu Zhou
- State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zu Chong Zhi Road, Shanghai, 201203, China.,University of Chinese Academy of Sciences, No. 19A Yuquan Road, Beijing, 100049, China
| | - Jiang Wang
- State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zu Chong Zhi Road, Shanghai, 201203, China.,University of Chinese Academy of Sciences, No. 19A Yuquan Road, Beijing, 100049, China
| | - Gengfu Xiao
- State Key Laboratory of Virology, Wuhan Institute of Virology, Center for Biosafety Mega-Science, Chinese Academy of Sciences, Wuhan, 430071, China.
| | - Fang Bai
- Shanghai Institute for Advanced Immunochemical Studies and School of Life Science and Technology, ShanghaiTech University, Shanghai, 201210, China.
| | - Hong Liu
- School of Chinese Materia Medica, Nanjing University of Chinese Medicine, 138 Xianlin Avenue, Nanjing, 210023, China. .,State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zu Chong Zhi Road, Shanghai, 201203, China.,University of Chinese Academy of Sciences, No. 19A Yuquan Road, Beijing, 100049, China
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26
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Regiocontrolled Rh(III)-catalyzed C-C coupling/C-N cyclization mediated by distinctive 1,2-migratory insertion of gem-difluoromethylene allenes: reaction development and mechanistic insight. CHINESE CHEM LETT 2022. [DOI: 10.1016/j.cclet.2022.107849] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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27
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Li QZ, Hou SH, Kang JC, Lian PF, Hao Y, Chen C, Zhou J, Ding TM, Zhang SY. Bioinspired Palladium-Catalyzed Intramolecular C(sp 3 )-H Activation for the Collective Synthesis of Proline Natural Products. Angew Chem Int Ed Engl 2022; 61:e202207088. [PMID: 35751877 DOI: 10.1002/anie.202207088] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Indexed: 12/18/2022]
Abstract
Bioinspired palladium-catalyzed intramolecular cyclization of amino acid derivatives containing a vinyl iodide moiety by C-H activation enabled rapid access to a wide range of functionalized proline derivatives with an exocyclic olefin. To demonstrate the practicality of this methodology, the functionalized prolines were used as intermediates for the synthesis of several natural products: lucentamycin A, oxotomaymycin, oxoprothracarcin, and barmumycin.
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Affiliation(s)
- Quan-Zhe Li
- Shanghai Key Laboratory for Molecular Engineer of Chiral Drugs, School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, Shanghai, 200240, P. R. China.,School of Pharmaceutical Sciences, Shanghai Jiao Tong University, Shanghai, 200240, P. R. China
| | - Si-Hua Hou
- Shanghai Key Laboratory for Molecular Engineer of Chiral Drugs, School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, Shanghai, 200240, P. R. China.,School of Pharmaceutical Sciences, Shanghai Jiao Tong University, Shanghai, 200240, P. R. China
| | - Jun-Chen Kang
- Shanghai Key Laboratory for Molecular Engineer of Chiral Drugs, School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, Shanghai, 200240, P. R. China
| | - Peng-Fei Lian
- Shanghai Key Laboratory for Molecular Engineer of Chiral Drugs, School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, Shanghai, 200240, P. R. China
| | - Yu Hao
- Shanghai Key Laboratory for Molecular Engineer of Chiral Drugs, School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, Shanghai, 200240, P. R. China
| | - Chao Chen
- Shanghai Key Laboratory for Molecular Engineer of Chiral Drugs, School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, Shanghai, 200240, P. R. China
| | - Jia Zhou
- Shanghai Key Laboratory for Molecular Engineer of Chiral Drugs, School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, Shanghai, 200240, P. R. China
| | - Tong-Mei Ding
- Shanghai Key Laboratory for Molecular Engineer of Chiral Drugs, School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, Shanghai, 200240, P. R. China
| | - Shu-Yu Zhang
- Shanghai Key Laboratory for Molecular Engineer of Chiral Drugs, School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, Shanghai, 200240, P. R. China
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28
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Naskar G, Jeganmohan M. Ligand‐Enabled [3+2] Annulation of Aromatic Acids with Maleimides by C(sp
3
)−H and C(sp
2
)−H Bond Activation. Chemistry 2022; 28:e202200778. [DOI: 10.1002/chem.202200778] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2022] [Indexed: 12/15/2022]
Affiliation(s)
- Gouranga Naskar
- Department of Chemistry Indian Institute of Technology Madras Chennai 600036 Tamil Nadu India
| | - Masilamani Jeganmohan
- Department of Chemistry Indian Institute of Technology Madras Chennai 600036 Tamil Nadu India
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29
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Li QZ, Hou SH, Kang JC, Lian PF, Hao Y, Chen C, Zhou J, Ding TM, Zhang SY. Bioinspired Palladium‐Catalyzed Intramolecular C(sp3)−H Activation for the Collective Synthesis of Proline Natural Products. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202207088] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Quan-Zhe Li
- Shanghai Jiao Tong University Chemistry CHINA
| | - Si-Hua Hou
- SJTU: Shanghai Jiao Tong University CHEMISTRY CHINA
| | | | | | - Yu Hao
- SJTU: Shanghai Jiao Tong University Chemistry CHINA
| | - Chao Chen
- SJTU: Shanghai Jiao Tong University Chemistry CHINA
| | - Jia Zhou
- SJTU: Shanghai Jiao Tong University Chemistry CHINA
| | | | - Shu-Yu Zhang
- Shanghai Jiao Tong University School of Chemistry and Chemical Engineering 800 Dongchuan RoadB329 Chemsitry BuildingShanghai Jiao Tong University 200240 Shanghai CHINA
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30
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Borgini M, Wipf P. Stereoselective synthesis of δ-fluorinated isoleucines exploiting consecutive C(sp3)-H bond activations. Tetrahedron 2022. [DOI: 10.1016/j.tet.2022.132876] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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31
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Allouche EMD, Simonet‐Davin R, Waser J. N-Terminal Selective C-H Azidation of Proline-Containing Peptides: a Platform for Late-Stage Diversification. Chemistry 2022; 28:e202200368. [PMID: 35137991 PMCID: PMC9306896 DOI: 10.1002/chem.202200368] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2022] [Indexed: 11/08/2022]
Abstract
A methodology for the C-H azidation of N-terminal proline-containing peptides was developed employing only commercially available reagents. Peptides bearing a broad range of functionalities and containing up to 6 amino acids were selectively azidated at the carbamate-protected N-terminal residue in presence of the numerous other functional groups present on the molecules. Post-functionalizations of the obtained aminal compounds were achieved: cycloaddition reactions or C-C bond formations via a sequence of imine formation/nucleophilic addition were performed, offering an easy access to diversified peptides.
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Affiliation(s)
- Emmanuelle M. D. Allouche
- Laboratory of Catalysis and Organic SynthesisEcole Polytechnique Fédérale de LausanneEPFL, SB ISIC LCSO, BCH 43061015LausanneSwitzerland
| | - Raphaël Simonet‐Davin
- Laboratory of Catalysis and Organic SynthesisEcole Polytechnique Fédérale de LausanneEPFL, SB ISIC LCSO, BCH 43061015LausanneSwitzerland
| | - Jerome Waser
- Laboratory of Catalysis and Organic SynthesisEcole Polytechnique Fédérale de LausanneEPFL, SB ISIC LCSO, BCH 43061015LausanneSwitzerland
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32
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Zhou Q, Bao Y, Yan G. 2‐Bromo‐3,3,3‐Trifluoropropene: A Versatile Reagent for the Synthesis of Fluorinated Compounds. Adv Synth Catal 2022. [DOI: 10.1002/adsc.202200023] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Qin Zhou
- College of Jiyang Zhejiang A&F University Zhuji 311800 People's Republic of China
| | - Yining Bao
- College of Jiyang Zhejiang A&F University Zhuji 311800 People's Republic of China
| | - Guobing Yan
- College of Jiyang Zhejiang A&F University Zhuji 311800 People's Republic of China
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33
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Ibara M, Abe T, Sawada D. Chemo- and Site-Selective Replacement of N-Terminal Carbamates in Peptides. Org Lett 2022; 24:2131-2136. [PMID: 35285651 DOI: 10.1021/acs.orglett.2c00370] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
In peptide synthesis, it is important to distinguish the terminal amino group and carry out the selective transformation of only the N-terminal protecting group. We describe herein a reaction for the chemo- and site-selective replacement of carbamates with various other carbamates only at the N-terminus of peptides. We demonstrate the scope of carbamates and peptides and the introduction of fluorine into a peptide. This strategy is applicable to the late stage of peptide synthesis.
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Affiliation(s)
- Miho Ibara
- Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, 1-1-1 Tsushima-naka, Kita-ku, Okayama 7008530, Japan
| | - Takumi Abe
- Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, 1-1-1 Tsushima-naka, Kita-ku, Okayama 7008530, Japan
| | - Daisuke Sawada
- Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, 1-1-1 Tsushima-naka, Kita-ku, Okayama 7008530, Japan
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34
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White AM, Palombi IR, Malins LR. Umpolung strategies for the functionalization of peptides and proteins. Chem Sci 2022; 13:2809-2823. [PMID: 35382479 PMCID: PMC8905898 DOI: 10.1039/d1sc06133j] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2021] [Accepted: 01/04/2022] [Indexed: 01/02/2023] Open
Abstract
Umpolung strategies, defined as synthetic approaches which reverse commonly accepted reactivity patterns, are broadly recognized as enabling tools for small molecule synthesis and catalysis. However, methods which exploit this logic for peptide and protein functionalizations are comparatively rare, with the overwhelming majority of existing bioconjugation approaches relying on the well-established reactivity profiles of a handful of amino acids. This perspective serves to highlight a small but growing body of recent work that masterfully capitalizes on the concept of polarity reversal for the selective modification of proteinogenic functionalities. Current applications of umpolung chemistry in organic synthesis and chemical biology as well as the vast potential for further innovations in peptide and protein modification will be discussed.
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Affiliation(s)
- Andrew M White
- Research School of Chemistry, Australian National University Canberra ACT 2601 Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, Australian National University Canberra ACT 2601 Australia
| | - Isabella R Palombi
- Research School of Chemistry, Australian National University Canberra ACT 2601 Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, Australian National University Canberra ACT 2601 Australia
| | - Lara R Malins
- Research School of Chemistry, Australian National University Canberra ACT 2601 Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, Australian National University Canberra ACT 2601 Australia
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35
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Dutta S, Bhattacharya T, Geffers FJ, Bürger M, Maiti D, Werz DB. Pd-catalysed C-H functionalisation of free carboxylic acids. Chem Sci 2022; 13:2551-2573. [PMID: 35340865 PMCID: PMC8890104 DOI: 10.1039/d1sc05392b] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Accepted: 01/07/2022] [Indexed: 11/21/2022] Open
Abstract
Pd-catalysed C-H functionalisation of free carboxylic acids has drawn significant attention over the last few years due to the predominance of carboxylic acid moieties in pharmaceuticals and agrochemicals. But their coordinating ability was overlooked and masked by exogenous directing groups for a long time. Even other crucial roles of carboxylic acids as additives and steric inducers that directly influence the mode of a reaction have been widely neglected. This review aims to embrace all of the diverse aspects of carboxylic acids except additive and steric effects by concisely and systematically describing their versatile role in Pd-catalysed proximal and distal C-H activation reactions that could be implemented in the pharmaceutical and agrochemical industries. In addition, the mechanistic perspectives along with several recent strategies developed in the last few years discussed here will serve as educational resources for future research.
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Affiliation(s)
- Suparna Dutta
- Department of Chemistry, Indian Institute of Technology Bombay Powai Mumbai 400076 India https://www.dmaiti.com
| | - Trisha Bhattacharya
- Department of Chemistry, Indian Institute of Technology Bombay Powai Mumbai 400076 India https://www.dmaiti.com
| | - Finn J Geffers
- Technische Universität Braunschweig, Institute of Organic Chemistry Hagenring 30 38106 Braunschweig Germany https://www.werzlab.de
| | - Marcel Bürger
- Technische Universität Braunschweig, Institute of Organic Chemistry Hagenring 30 38106 Braunschweig Germany https://www.werzlab.de
| | - Debabrata Maiti
- Department of Chemistry, Indian Institute of Technology Bombay Powai Mumbai 400076 India https://www.dmaiti.com
| | - Daniel B Werz
- Technische Universität Braunschweig, Institute of Organic Chemistry Hagenring 30 38106 Braunschweig Germany https://www.werzlab.de
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36
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Guan I, Williams K, Liu JST, Liu X. Synthetic Thiol and Selenol Derived Amino Acids for Expanding the Scope of Chemical Protein Synthesis. Front Chem 2022; 9:826764. [PMID: 35237567 PMCID: PMC8883728 DOI: 10.3389/fchem.2021.826764] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2021] [Accepted: 12/29/2021] [Indexed: 01/18/2023] Open
Abstract
Cells employ post-translational modifications (PTMs) as key mechanisms to expand proteome diversity beyond the inherent limitations of a concise genome. The ability to incorporate post-translationally modified amino acids into protein targets via chemical ligation of peptide fragments has enabled the access to homogeneous proteins bearing discrete PTM patterns and empowered functional elucidation of individual modification sites. Native chemical ligation (NCL) represents a powerful and robust means for convergent assembly of two homogeneous, unprotected peptides bearing an N-terminal cysteine residue and a C-terminal thioester, respectively. The subsequent discovery that protein cysteine residues can be chemoselectively desulfurized to alanine has ignited tremendous interest in preparing unnatural thiol-derived variants of proteogenic amino acids for chemical protein synthesis following the ligation-desulfurization logic. Recently, the 21st amino acid selenocysteine, together with other selenyl derivatives of amino acids, have been shown to facilitate ultrafast ligation with peptidyl selenoesters, while the advancement in deselenization chemistry has provided reliable bio-orthogonality to PTMs and other amino acids. The combination of these ligation techniques and desulfurization/deselenization chemistries has led to streamlined synthesis of multiple structurally-complex, post-translationally modified proteins. In this review, we aim to summarize the latest chemical synthesis of thiolated and selenylated amino-acid building blocks and exemplify their important roles in conquering challenging protein targets with distinct PTM patterns.
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Affiliation(s)
- Ivy Guan
- School of Chemistry, Faculty of Science, The University of Sydney, Sydney, NSW, Australia
- The Heart Research Institute, The University of Sydney, Sydney, NSW, Australia
| | - Kayla Williams
- School of Chemistry, Faculty of Science, The University of Sydney, Sydney, NSW, Australia
- The Heart Research Institute, The University of Sydney, Sydney, NSW, Australia
| | - Joanna Shu Ting Liu
- The Heart Research Institute, The University of Sydney, Sydney, NSW, Australia
- School of Medical Sciences, Faculty of Medicine and Health, The University of Sydney, Sydney, NSW, Australia
| | - Xuyu Liu
- School of Chemistry, Faculty of Science, The University of Sydney, Sydney, NSW, Australia
- The Heart Research Institute, The University of Sydney, Sydney, NSW, Australia
- *Correspondence: Xuyu Liu,
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37
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Allouche EMD, Grinhagena E, Waser J. Hypervalent Iodine-Mediated Late-Stage Peptide and Protein Functionalization. Angew Chem Int Ed Engl 2022; 61:e202112287. [PMID: 34674359 PMCID: PMC9299824 DOI: 10.1002/anie.202112287] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2021] [Indexed: 12/20/2022]
Abstract
Hypervalent iodine compounds are powerful reagents for the development of novel transformations. As they exhibit low toxicity, high functional group tolerance, and stability in biocompatible media, they have been used for the functionalization of biomolecules. Herein, we report recent advances up to June 2021 in peptide and protein modification using hypervalent iodine reagents. Their use as group transfer or oxidizing reagents is discussed in this Minireview, including methods targeting polar, aromatic, or aliphatic amino acids and peptide termini.
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Affiliation(s)
- Emmanuelle M. D. Allouche
- Laboratory of Catalysis and Organic SynthesisInstitute of Chemical Sciences and EngineeringEcole Polytechnique Fédérale de Lausanne, EPFL, SB ISIC, LCSO, BCH 14021015LausanneSwitzerland
| | - Elija Grinhagena
- Laboratory of Catalysis and Organic SynthesisInstitute of Chemical Sciences and EngineeringEcole Polytechnique Fédérale de Lausanne, EPFL, SB ISIC, LCSO, BCH 14021015LausanneSwitzerland
| | - Jerome Waser
- Laboratory of Catalysis and Organic SynthesisInstitute of Chemical Sciences and EngineeringEcole Polytechnique Fédérale de Lausanne, EPFL, SB ISIC, LCSO, BCH 14021015LausanneSwitzerland
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38
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Allouche EMD, Grinhagena E, Waser J. Hypervalent Iodine‐Mediated Late‐Stage Peptide and Protein Functionalization. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202112287] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Emmanuelle M. D. Allouche
- Laboratory of Catalysis and Organic Synthesis Institute of Chemical Sciences and Engineering Ecole Polytechnique Fédérale de Lausanne, EPFL, SB ISIC, LCSO, BCH 1402 1015 Lausanne Switzerland
| | - Elija Grinhagena
- Laboratory of Catalysis and Organic Synthesis Institute of Chemical Sciences and Engineering Ecole Polytechnique Fédérale de Lausanne, EPFL, SB ISIC, LCSO, BCH 1402 1015 Lausanne Switzerland
| | - Jerome Waser
- Laboratory of Catalysis and Organic Synthesis Institute of Chemical Sciences and Engineering Ecole Polytechnique Fédérale de Lausanne, EPFL, SB ISIC, LCSO, BCH 1402 1015 Lausanne Switzerland
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39
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Mohanty SR, Prusty N, Banjare SK, Nanda T, Ravikumar PC. Overcoming the Challenges toward Selective C(6)-H Functionalization of 2-Pyridone with Maleimide through Mn(I)-Catalyst: Easy Access to All-Carbon Quaternary Center. Org Lett 2022; 24:848-852. [PMID: 35040656 DOI: 10.1021/acs.orglett.1c04121] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
An earth-abundant and inexpensive Mn(I)-catalyzed alkylation of 2-pyridone with maleimide has been reported for the first time, in contrast to previously reported Diels-Alder products. Notably, an unexpected rearrangement has been discovered in the presence of acetic acid, which also provides a unique class of compounds bearing three different N-heterocycles with an all-carbon quaternary center. Furthermore, single crystal X-ray and HRMS revealed a five-membered manganacycle intermediate. This methodology tolerates a wide variety of functional groups delivering the alkylated products in moderate to excellent yields.
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Affiliation(s)
- Smruti Ranjan Mohanty
- School of Chemical Sciences, National Institute of Science Education and Research (NISER), HBNI, Bhubaneswar, Jatani, Khurda, Odisha 752050, India
| | - Namrata Prusty
- School of Chemical Sciences, National Institute of Science Education and Research (NISER), HBNI, Bhubaneswar, Jatani, Khurda, Odisha 752050, India
| | - Shyam Kumar Banjare
- School of Chemical Sciences, National Institute of Science Education and Research (NISER), HBNI, Bhubaneswar, Jatani, Khurda, Odisha 752050, India
| | - Tanmayee Nanda
- School of Chemical Sciences, National Institute of Science Education and Research (NISER), HBNI, Bhubaneswar, Jatani, Khurda, Odisha 752050, India
| | - Ponneri C Ravikumar
- School of Chemical Sciences, National Institute of Science Education and Research (NISER), HBNI, Bhubaneswar, Jatani, Khurda, Odisha 752050, India
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40
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Mackay AS, Payne RJ, Malins LR. Electrochemistry for the Chemoselective Modification of Peptides and Proteins. J Am Chem Soc 2022; 144:23-41. [PMID: 34968405 DOI: 10.1021/jacs.1c11185] [Citation(s) in RCA: 49] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Although electrochemical strategies for small-molecule synthesis are flourishing, this technology has yet to be fully exploited for the mild and chemoselective modification of peptides and proteins. With the growing number of diverse peptide natural products being identified and the emergence of modified proteins as therapeutic and diagnostic agents, methods for electrochemical modification stand as alluring prospects for harnessing the reactivity of polypeptides to build molecular complexity. As a mild and inherently tunable reaction platform, electrochemistry is arguably well-suited to overcome the chemo- and regioselectivity issues which limit existing bioconjugation strategies. This Perspective will showcase recently developed electrochemical approaches to peptide and protein modification. The article also highlights the wealth of untapped opportunities for the production of homogeneously modified biomolecules, with an eye toward realizing the enormous potential of electrochemistry for chemoselective bioconjugation chemistry.
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Affiliation(s)
- Angus S Mackay
- School of Chemistry, The University of Sydney, Sydney, NSW 2006, Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Sydney, Sydney, NSW 2006, Australia
| | - Richard J Payne
- School of Chemistry, The University of Sydney, Sydney, NSW 2006, Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Sydney, Sydney, NSW 2006, Australia
| | - Lara R Malins
- Research School of Chemistry, Australian National University, Canberra, ACT 2601, Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, Australian National University, Canberra, ACT 2601, Australia
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41
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Liu X, Kuang C, Su C. Transition-metal Catalyzed 1,2,3-Triazole-assisted C—H Functionalization Processes. ACTA CHIMICA SINICA 2022. [DOI: 10.6023/a22040147] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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42
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Chen Y, Ni S, Li MD, Dang L. Theoretical Investigate of the α-Substitution Effect on γ-C(sp3)−H Arylation of Amines: Structure-Reactivity Relationship (SRR) Studies. Org Chem Front 2022. [DOI: 10.1039/d2qo00158f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Structure-reactivity relationship (SRR) studies to understand the α-substitution effect toward Pd-catalyzed γ-C(sp3)−H arylation enabled by catalytic transient directing groups have carefully been performed by DFT calculations. Selected transient directing groups...
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43
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Wei Y, Xu H, Chen F, Gao H, Huang Y, Yi W, Zhou Z. Specific assembly of dihydrobenzofuran frameworks via Rh( iii)-catalysed C–H coupling of N-phenoxyacetamides with 2-alkenylphenols. NEW J CHEM 2022. [DOI: 10.1039/d2nj00175f] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
The synergistic dual directing group-enabled and Rh(iii)-catalysed redox-neutral C–H functionalization/[3+2] annulation has been realized for the synthesis of dihydrobenzofurans.
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Affiliation(s)
- Yinhui Wei
- Department of Fundamental Medicine & Pharmaceutical Sciences, Bijie Medical College, Bijie, 551700, China
- Key Laboratory of Molecular Target & Clinical Pharmacology and the State Key Laboratory of Respiratory Disease, School of Pharmaceutical Sciences & the Fifth Affiliated Hospital, Guangzhou Medical University, Guangzhou, Guangdong 511436, China
| | - Huiying Xu
- Key Laboratory of Molecular Target & Clinical Pharmacology and the State Key Laboratory of Respiratory Disease, School of Pharmaceutical Sciences & the Fifth Affiliated Hospital, Guangzhou Medical University, Guangzhou, Guangdong 511436, China
| | - Fangyuan Chen
- Key Laboratory of Molecular Target & Clinical Pharmacology and the State Key Laboratory of Respiratory Disease, School of Pharmaceutical Sciences & the Fifth Affiliated Hospital, Guangzhou Medical University, Guangzhou, Guangdong 511436, China
| | - Hui Gao
- Key Laboratory of Molecular Target & Clinical Pharmacology and the State Key Laboratory of Respiratory Disease, School of Pharmaceutical Sciences & the Fifth Affiliated Hospital, Guangzhou Medical University, Guangzhou, Guangdong 511436, China
| | - Yugang Huang
- Key Laboratory of Molecular Target & Clinical Pharmacology and the State Key Laboratory of Respiratory Disease, School of Pharmaceutical Sciences & the Fifth Affiliated Hospital, Guangzhou Medical University, Guangzhou, Guangdong 511436, China
| | - Wei Yi
- Department of Fundamental Medicine & Pharmaceutical Sciences, Bijie Medical College, Bijie, 551700, China
- Key Laboratory of Molecular Target & Clinical Pharmacology and the State Key Laboratory of Respiratory Disease, School of Pharmaceutical Sciences & the Fifth Affiliated Hospital, Guangzhou Medical University, Guangzhou, Guangdong 511436, China
| | - Zhi Zhou
- Key Laboratory of Molecular Target & Clinical Pharmacology and the State Key Laboratory of Respiratory Disease, School of Pharmaceutical Sciences & the Fifth Affiliated Hospital, Guangzhou Medical University, Guangzhou, Guangdong 511436, China
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44
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Landge VG, Bonds AL, Mncwango TA, Mather CB, Saleh Y, Fields HL, Lee F, Young MC. Amine-Directed Mizoroki-Heck Arylation of Free Allylamines. Org Chem Front 2022. [DOI: 10.1039/d2qo00041e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The transition metal-catalyzed Mizoroki−Heck reaction is a powerful method to synthesize C–C bonds, allowing access to several important pharmaceuticals. Traditionally free amines have not been compatible with these approaches due...
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45
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He Y, Wang H, Xu L, Li DY, Ge JH, Feng DF, Feng W, Zou G, Liu PN. Direct Access to Bridged Polycyclic Skeletons by Merging Oxidative C-H Annulation and Cascade [4 + 2] Cycloaddition. Org Lett 2021; 24:121-126. [PMID: 34931834 DOI: 10.1021/acs.orglett.1c03652] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
We report a step-economic strategy for the direct synthesis of bridged polycyclic skeletons by merging oxidative C-H annulation and cascade cycloaddition. In the protocol, spiro[cyclopentane-1,3'-indoline]-2,4-dien-2'-ones were first synthesized by oxidative C-H annulation of ethylideneoxindoles with alkynes. Subsequent cascade [4 + 2] cycloaddition with dienophiles gave the bridged bicyclo[2.2.1]quinolin-2(1H)-ones and enabled the one-pot construction of two quaternary carbon centers and three C-C bonds. Mechanistic investigations of the latter suggest a cascade ring-opening, 1,5-sigmatropic rearrangement, and [4 + 2] cycloaddition process.
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Affiliation(s)
- Yan He
- Shanghai Key Laboratory of Functional Materials Chemistry, Key Laboratory for Advanced Materials, Frontiers Science Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, East China University of Science & Technology, 130 Meilong Road, Shanghai 200237, China.,School of Materials and Chemical Engineering, Xuzhou University of Technology, Xuzhou 221018, China
| | - Heng Wang
- Shanghai Key Laboratory of Functional Materials Chemistry, Key Laboratory for Advanced Materials, Frontiers Science Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, East China University of Science & Technology, 130 Meilong Road, Shanghai 200237, China
| | - Li Xu
- Shanghai Key Laboratory of Functional Materials Chemistry, Key Laboratory for Advanced Materials, Frontiers Science Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, East China University of Science & Technology, 130 Meilong Road, Shanghai 200237, China
| | - Deng-Yuan Li
- Shanghai Key Laboratory of Functional Materials Chemistry, Key Laboratory for Advanced Materials, Frontiers Science Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, East China University of Science & Technology, 130 Meilong Road, Shanghai 200237, China
| | - Ji-Hong Ge
- Shanghai Key Laboratory of Functional Materials Chemistry, Key Laboratory for Advanced Materials, Frontiers Science Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, East China University of Science & Technology, 130 Meilong Road, Shanghai 200237, China
| | - Da-Fu Feng
- Shanghai Key Laboratory of Functional Materials Chemistry, Key Laboratory for Advanced Materials, Frontiers Science Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, East China University of Science & Technology, 130 Meilong Road, Shanghai 200237, China
| | - Wei Feng
- Shanghai Key Laboratory of Functional Materials Chemistry, Key Laboratory for Advanced Materials, Frontiers Science Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, East China University of Science & Technology, 130 Meilong Road, Shanghai 200237, China
| | - Gang Zou
- Shanghai Key Laboratory of Functional Materials Chemistry, Key Laboratory for Advanced Materials, Frontiers Science Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, East China University of Science & Technology, 130 Meilong Road, Shanghai 200237, China
| | - Pei-Nian Liu
- Shanghai Key Laboratory of Functional Materials Chemistry, Key Laboratory for Advanced Materials, Frontiers Science Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, East China University of Science & Technology, 130 Meilong Road, Shanghai 200237, China
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46
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Liu J, Wang P, Zeng W, Lu Q, Zhu Q. Late-stage construction of stapled peptides through Fujiwara-Moritani reaction between tryptophan and olefins. Chem Commun (Camb) 2021; 57:11661-11664. [PMID: 34671802 DOI: 10.1039/d1cc04202e] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Herein, the first example of a palladium-catalyzed Fujiwara-Moritani reaction for olefination of tryptophan (Trp) residues, free from directing groups, was presented. The developed reaction proceeds efficiently for peptide modification, ligation and peptide stapling.
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Affiliation(s)
- Jiang Liu
- Key Laboratory of Bioorganic Synthesis of Zhejiang Province, College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou 310014, China.
| | - Peng Wang
- Key Laboratory of Bioorganic Synthesis of Zhejiang Province, College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou 310014, China.
| | - Wei Zeng
- Key Laboratory of Bioorganic Synthesis of Zhejiang Province, College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou 310014, China.
| | - Qi Lu
- Key Laboratory of Bioorganic Synthesis of Zhejiang Province, College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou 310014, China.
| | - Qing Zhu
- Key Laboratory of Bioorganic Synthesis of Zhejiang Province, College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou 310014, China.
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Wu M, Wang S, Wang Y, Gao H, Yi W, Zhou Z. TFA‐Prompted/Rh(III)‐Catalysed Chemoselective C
3
− or C
2
−H Functionalization of Indoles with Methylenecyclopropanes. European J Org Chem 2021. [DOI: 10.1002/ejoc.202101132] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Min Wu
- Key Laboratory of Molecular Target & Clinical Pharmacology and the State Key Laboratory of Respiratory Disease School of Pharmaceutical Sciences & the Fifth Affiliated Hospital Guangzhou Medical University Guangzhou Guangdong 511436 P. R. China
| | - Shengdong Wang
- Key Laboratory of Molecular Target & Clinical Pharmacology and the State Key Laboratory of Respiratory Disease School of Pharmaceutical Sciences & the Fifth Affiliated Hospital Guangzhou Medical University Guangzhou Guangdong 511436 P. R. China
| | - Yi Wang
- Key Laboratory of Molecular Target & Clinical Pharmacology and the State Key Laboratory of Respiratory Disease School of Pharmaceutical Sciences & the Fifth Affiliated Hospital Guangzhou Medical University Guangzhou Guangdong 511436 P. R. China
| | - Hui Gao
- Key Laboratory of Molecular Target & Clinical Pharmacology and the State Key Laboratory of Respiratory Disease School of Pharmaceutical Sciences & the Fifth Affiliated Hospital Guangzhou Medical University Guangzhou Guangdong 511436 P. R. China
| | - Wei Yi
- Key Laboratory of Molecular Target & Clinical Pharmacology and the State Key Laboratory of Respiratory Disease School of Pharmaceutical Sciences & the Fifth Affiliated Hospital Guangzhou Medical University Guangzhou Guangdong 511436 P. R. China
| | - Zhi Zhou
- Key Laboratory of Molecular Target & Clinical Pharmacology and the State Key Laboratory of Respiratory Disease School of Pharmaceutical Sciences & the Fifth Affiliated Hospital Guangzhou Medical University Guangzhou Guangdong 511436 P. R. China
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