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Sanyal SK, Pukala T, Mittal P, Reith F, Brugger J, Etschmann B, Shuster J. From biomolecules to biogeochemistry: Exploring the interaction of an indigenous bacterium with gold. CHEMOSPHERE 2023; 339:139657. [PMID: 37543229 DOI: 10.1016/j.chemosphere.2023.139657] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2023] [Revised: 07/23/2023] [Accepted: 07/24/2023] [Indexed: 08/07/2023]
Abstract
Specialised microbial communities colonise the surface of gold particles in soils/sediments, and catalyse gold dissolution and re-precipitation, thereby contributing to the environmental mobility and toxicity of this 'inert' precious metal. We assessed the proteomic and physiological response of Serratia proteamaculans, the first metabolically active bacterium enriched and isolated directly from natural gold particles, when exposed to toxic levels of soluble Au3+ (10 μM). The results were compared to a metal-free blank, and to cultures exposed to similarly toxic levels of soluble Cu2+ (0.1 mM); Cu was chosen for comparison because it is closely associated with Au in nature due to similar geochemical properties. A total of 273 proteins were detected from the cells that experienced the oxidative effects of soluble Au, of which 139 (51%) were upregulated with either sole expression (31%) or had synthesis levels greater than the Au-free control (20%). The majority (54%) of upregulated proteins were functionally different from up-regulated proteins in the bacteria-copper treatment. These proteins were related to broad functions involving metabolism and biogenesis, followed by cellular process and signalling, indicating significant specificity for Au. This proteomic study revealed that the bacterium upregulates the synthesis of various proteins related to oxidative stress response (e.g., Monothiol-Glutaredoxin, Thiol Peroxidase, etc.) and cellular damage repair, which leads to the formation of metallic gold nanoparticles less toxic than ionic gold. Therefore, indigenous bacteria may mediate the toxicity of Au through two different yet simultaneous processes: i) repairing cellular components by replenishing damaged proteins and ii) neutralising reactive oxygen species (ROS) by up-regulating the synthesis of antioxidants. By connecting the fields of molecular bacteriology and environmental biogeochemistry, this study is the first step towards the development of biotechnologies based on indigenous bacteria applied to gold bio-recovery and bioremediation of contaminated environments.
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Affiliation(s)
- Santonu K Sanyal
- School of Earth, Atmosphere and Environment, Monash University, Clayton, Victoria, 3800, Australia.
| | - Tara Pukala
- Adelaide Proteomics Centre, The University of Adelaide, Adelaide, South Australia, 5001, Australia; School of Physics, Chemistry and Earth Sciences, The University of Adelaide, Adelaide, South Australia, 5001, Australia
| | - Parul Mittal
- Adelaide Proteomics Centre, The University of Adelaide, Adelaide, South Australia, 5001, Australia
| | | | - Joël Brugger
- School of Earth, Atmosphere and Environment, Monash University, Clayton, Victoria, 3800, Australia
| | - Barbara Etschmann
- School of Earth, Atmosphere and Environment, Monash University, Clayton, Victoria, 3800, Australia
| | - Jeremiah Shuster
- Department of Earth Sciences, Western University, London, Ontario, N6A 3K7, Canada
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Ermolin MS, Ivaneev AI, Brzhezinskiy AS, Karandashev VK, Mokhov AV, Fedotov PS. Anthropogenic Source of Gold in Moscow Urban Dust. JOURNAL OF ANALYTICAL CHEMISTRY 2022. [DOI: 10.1134/s1061934822100045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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3
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Schwartz‐Duval AS, Sokolov KV. Prospecting Cellular Gold Nanoparticle Biomineralization as a Viable Alternative to Prefabricated Gold Nanoparticles. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2022; 9:e2105957. [PMID: 35508715 PMCID: PMC9284136 DOI: 10.1002/advs.202105957] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Revised: 03/17/2022] [Indexed: 06/14/2023]
Abstract
Gold nanoparticles (GNPs) have shown considerable potential in a vast number of biomedical applications. However, currently there are no clinically approved injectable GNP formulations. Conversely, gold salts have been used in the clinic for nearly a century. Further, there is evidence of GNP formation in patients treated with gold salts (i.e., chrysiasis). Recent reports evaluating this phenomenon in human cells and in murine models indicate that the use of gold ions for in situ formation of theranostic GNPs could greatly improve the delivery within dense biological tissues, increase efficiency of intracellular gold uptake, and specificity of GNP formation within cancer cells. These attributes in combination with safe clinical application of gold salts make this process a viable strategy for clinical translation. Here, the first summary of the current knowledge related to GNP biomineralization in mammalian cells is provided along with critical assessment of potential biomedical applications of this newly emergent field.
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Affiliation(s)
- Aaron S. Schwartz‐Duval
- Department of Imaging PhysicsThe University of Texas MD Anderson Cancer Center1515 Holcombe BoulevardHoustonTX77030USA
| | - Konstantin V. Sokolov
- Department of Imaging PhysicsThe University of Texas MD Anderson Cancer Center1515 Holcombe BoulevardHoustonTX77030USA
- The University of Texas MD Anderson Cancer Center UTHealth Graduate School of Biomedical Sciences6767 Bertner AveHoustonTX77030USA
- Department of BioengineeringRice University6100 Main St.HoustonTX77030USA
- Department of Biomedical EngineeringThe University of Texas at Austin107 W Dean Keeton St.AustinTX78712USA
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Mishra S, Huang Y, Li J, Wu X, Zhou Z, Lei Q, Bhatt P, Chen S. Biofilm-mediated bioremediation is a powerful tool for the removal of environmental pollutants. CHEMOSPHERE 2022; 294:133609. [PMID: 35051518 DOI: 10.1016/j.chemosphere.2022.133609] [Citation(s) in RCA: 49] [Impact Index Per Article: 24.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2021] [Revised: 01/09/2022] [Accepted: 01/11/2022] [Indexed: 06/14/2023]
Abstract
Biofilm-mediated bioremediation is an attractive approach for the elimination of environmental pollutants, because of its wide adaptability, biomass, and excellent capacity to absorb, immobilize, or degrade contaminants. Biofilms are assemblages of individual or mixed microbial cells adhering to a living or non-living surface in an aqueous environment. Biofilm-forming microorganisms have excellent survival under exposure to harsh environmental stressors, can compete for nutrients, exhibit greater tolerance to pollutants compared to free-floating planktonic cells, and provide a protective environment for cells. Biofilm communities are thus capable of sorption and metabolization of organic pollutants and heavy metals through a well-controlled expression pattern of genes governed by quorum sensing. The involvement of quorum sensing and chemotaxis in biofilms can enhance the bioremediation kinetics with the help of signaling molecules, the transfer of genetic material, and metabolites. This review provides in-depth knowledge of the process of biofilm formation in microorganisms, their regulatory mechanisms of interaction, and their importance and application as powerful bioremediation agents in the biodegradation of environmental pollutants, including hydrocarbons, pesticides, and heavy metals.
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Affiliation(s)
- Sandhya Mishra
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, 510642, China; Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, 510642, China
| | - Yaohua Huang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, 510642, China; Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, 510642, China
| | - Jiayi Li
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, 510642, China; Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, 510642, China
| | - Xiaozhen Wu
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, 510642, China; Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, 510642, China
| | - Zhe Zhou
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, 510642, China; Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, 510642, China
| | - Qiqi Lei
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, 510642, China; Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, 510642, China
| | - Pankaj Bhatt
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, 510642, China; Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, 510642, China
| | - Shaohua Chen
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, 510642, China; Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, 510642, China.
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Tauseef A, Hisam F, Hussain T, Caruso A, Hussain K, Châtel A, Chénais B. Nanomicrobiology: Emerging Trends in Microbial Synthesis of Nanomaterials and Their Applications. J CLUST SCI 2022. [DOI: 10.1007/s10876-022-02256-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Sampath MK, Nigam VK. Microbial-based eco-friendly processes for the recovery of metals from E-waste. BIOPROSPECTING OF MICROBIAL DIVERSITY 2022:393-405. [DOI: 10.1016/b978-0-323-90958-7.00015-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
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Alotaibi BS, Khan M, Shamim S. Unraveling the Underlying Heavy Metal Detoxification Mechanisms of Bacillus Species. Microorganisms 2021; 9:1628. [PMID: 34442707 PMCID: PMC8402239 DOI: 10.3390/microorganisms9081628] [Citation(s) in RCA: 36] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Revised: 07/08/2021] [Accepted: 07/13/2021] [Indexed: 12/26/2022] Open
Abstract
The rise of anthropogenic activities has resulted in the increasing release of various contaminants into the environment, jeopardizing fragile ecosystems in the process. Heavy metals are one of the major pollutants that contribute to the escalating problem of environmental pollution, being primarily introduced in sensitive ecological habitats through industrial effluents, wastewater, as well as sewage of various industries. Where heavy metals like zinc, copper, manganese, and nickel serve key roles in regulating different biological processes in living systems, many heavy metals can be toxic even at low concentrations, such as mercury, arsenic, cadmium, chromium, and lead, and can accumulate in intricate food chains resulting in health concerns. Over the years, many physical and chemical methods of heavy metal removal have essentially been investigated, but their disadvantages like the generation of chemical waste, complex downstream processing, and the uneconomical cost of both methods, have rendered them inefficient,. Since then, microbial bioremediation, particularly the use of bacteria, has gained attention due to the feasibility and efficiency of using them in removing heavy metals from contaminated environments. Bacteria have several methods of processing heavy metals through general resistance mechanisms, biosorption, adsorption, and efflux mechanisms. Bacillus spp. are model Gram-positive bacteria that have been studied extensively for their biosorption abilities and molecular mechanisms that enable their survival as well as their ability to remove and detoxify heavy metals. This review aims to highlight the molecular methods of Bacillus spp. in removing various heavy metals ions from contaminated environments.
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Affiliation(s)
- Badriyah Shadid Alotaibi
- Department of Pharmaceutical Sciences, College of Pharmacy, Princess Nourah Bint Abdulrahman University, Riyadh 11671, Saudi Arabia;
| | - Maryam Khan
- Institute of Molecular Biology and Biotechnology (IMBB), Defence Road Campus, The University of Lahore, Lahore 55150, Pakistan;
| | - Saba Shamim
- Institute of Molecular Biology and Biotechnology (IMBB), Defence Road Campus, The University of Lahore, Lahore 55150, Pakistan;
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Shar S, Reith F, Ball AS, Shahsavari E. Long-term Impact of Gold and Platinum on Microbial Diversity in Australian Soils. MICROBIAL ECOLOGY 2021; 81:977-989. [PMID: 33404821 DOI: 10.1007/s00248-020-01663-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2020] [Accepted: 12/07/2020] [Indexed: 06/12/2023]
Abstract
The effects of platinum (Pt) and gold (Au) and on the soil bacterial community was evaluated in four different Australian soil types (acidic Burn Grounds (BGR), organic matter-rich Fox Lane, high silt/metal Pinpinio (PPN), and alkali Minnipa (MNP) spiked with either Pt or Au at 1, 25, and 100 mg kg-1 using a next-generation sequencing approach (amplicon-based, MiSeq). Soil type and metal concentrations were observed to be key drivers of Pt and Au effects on soil microbial community structure. Different trends were therefore observed in the response of the bacterial community to Pt and Au amendments; however in each soil type, Pt and Au amendment caused a detectable shift in community structure that in most samples was positively correlated with increasing metal concentrations. New dominant groups were only observed in BGR and PPN soils at 100 mg kg-1 (Kazan-3B-28 and Verrucomicrobia groups (BGR, Pt) and Firmicutes and Caldithrix groups (PPN, Pt) and WS2 (BGR, Au). The effects of Pt on soil microbial diversity were largely adverse at 100 mg kg-1 and were pronounced in acidic, basic, and metal/silt-rich soils. However, this effect was concentration-related; Au appeared to be more toxic to soil bacterial communities than Pt at 25 mg kg-1 but Pt was more toxic at 100 mg kg-1. More bacterial groups such as those belonging to Burkholderiales/Burkholderiaceae, Alicyclobacillaceae, Rubrobacteraceae, Cytophagaceae, Oxalobacteraceae were selectively enriched by Pt compared to Au (Sphingomonadaceae and Rhodospirillaceae) amendments irrespective of soil type. The research outcomes have important implications in the management (remediation) of Pt- and Au-contaminated environments.
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Affiliation(s)
- Sahar Shar
- School of Science, RMIT University, PO Box 71, Bundoora, Victoria, 3083, Australia
- Deanship of Scientific Research King Saud University, Riyadh, 11451, Saudi Arabia
| | - Frank Reith
- Department of Molecular and Cellular Biology, School of Biological Sciences, The University of Adelaide, Adelaide, South Australia, 5005, Australia
- CSIRO Land and Water, Environmental Contaminant Mitigation and Technologies, PMB2, Glen Osmond, South Australia, 5064, Australia
| | - Andrew S Ball
- School of Science, RMIT University, PO Box 71, Bundoora, Victoria, 3083, Australia
| | - Esmaeil Shahsavari
- School of Science, RMIT University, PO Box 71, Bundoora, Victoria, 3083, Australia.
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9
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Sanyal SK, Brugger J, Etschmann B, Pederson SM, Delport PWJ, Dixon R, Tearle R, Ludington A, Reith F, Shuster J. Metal resistant bacteria on gold particles: Implications of how anthropogenic contaminants could affect natural gold biogeochemical cycling. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 727:138698. [PMID: 32330727 DOI: 10.1016/j.scitotenv.2020.138698] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2020] [Revised: 04/12/2020] [Accepted: 04/12/2020] [Indexed: 06/11/2023]
Abstract
In Earth's near-surface environments, gold biogeochemical cycling involves gold dissolution and precipitation processes, which are partly attributed to bacteria. These biogeochemical processes as well as abrasion (via physical transport) are known to act upon gold particles, thereby resulting in particle transformation including the development of pure secondary gold and altered morphology, respectively. While previous studies have inferred gold biogeochemical cycling from gold particles obtained from natural environments, little is known about how metal contamination in an environment could impact this cycle. Therefore, this study aims to infer how potentially toxic metal contaminants could affect the structure and chemistry of gold particles and therefore the biogeochemical cycling of gold. In doing so, river sediments and gold particles from the De Kaap Valley, South Africa, were analysed using both microanalytical and molecular techniques. Of the metal contaminants detected in the sediment, mercury can chemically interact with gold particles thereby directly altering particle morphology and "erasing" textural evidence indicative of particle transformation. Other metal contaminants (including mercury) indirectly affect gold cycling by exerting a selective pressure on bacteria living on the surface of gold particles. Particles harbouring gold-tolerant bacteria with diverse metal resistant genes, such as Arthrobacter sp. and Pseudomonas sp., contained nearly two times more secondary gold relative to particles harbouring bacteria with less gold-tolerance. In conclusion, metal contaminants can have a direct or indirect effect on gold biogeochemical cycling in natural environments impacted by anthropogenic activity.
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Affiliation(s)
- Santonu Kumar Sanyal
- School of Biological Sciences, The University of Adelaide, Adelaide, South Australia 5005, Australia; CSIRO Land and Water, Environmental Contaminant Mitigation and Technologies, PMB2, Glen Osmond, South Australia 5064, Australia
| | - Joël Brugger
- Monash University, Clayton, Victoria 3800, Australia
| | | | - Stephen M Pederson
- Bioinformatics Hub, School of Biological Sciences, The University of Adelaide, Adelaide, South Australia 5005, Australia
| | | | - Roger Dixon
- University of Pretoria, Pretoria 0001, South Africa
| | - Rick Tearle
- Bioinformatics Hub, School of Biological Sciences, The University of Adelaide, Adelaide, South Australia 5005, Australia; Davies Research Centre, School of Animal & Veterinary Sciences, The University of Adelaide, Adelaide, South Australia 5005, Australia
| | - Alastair Ludington
- School of Biological Sciences, The University of Adelaide, Adelaide, South Australia 5005, Australia; Bioinformatics Hub, School of Biological Sciences, The University of Adelaide, Adelaide, South Australia 5005, Australia
| | - Frank Reith
- School of Biological Sciences, The University of Adelaide, Adelaide, South Australia 5005, Australia; CSIRO Land and Water, Environmental Contaminant Mitigation and Technologies, PMB2, Glen Osmond, South Australia 5064, Australia
| | - Jeremiah Shuster
- School of Biological Sciences, The University of Adelaide, Adelaide, South Australia 5005, Australia; CSIRO Land and Water, Environmental Contaminant Mitigation and Technologies, PMB2, Glen Osmond, South Australia 5064, Australia.
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Sanyal SK, Reith F, Shuster J. A genomic perspective of metal-resistant bacteria from gold particles: Possible survival mechanisms during gold biogeochemical cycling. FEMS Microbiol Ecol 2020; 96:5851273. [DOI: 10.1093/femsec/fiaa111] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2020] [Accepted: 06/02/2020] [Indexed: 11/13/2022] Open
Abstract
ABSTRACT
A bacterial consortium was enriched from gold particles that ‘experienced’ ca. 80 years of biotransformation within waste-rock piles (Australia). This bacterial consortium was exposed to 10 µM AuCl3 to obtain Au-tolerant bacteria. From these isolates, Serratia sp. and Stenotrophomonas sp. were the most Au-tolerant and reduced soluble Au as pure gold nanoparticles, indicating that passive mineralisation is a mechanism for mediating the toxic effect of soluble Au produced during particle dissolution. Genome-wide analysis demonstrated that these isolates also possessed various genes that could provide cellular defence enabling survival under heavy-metal stressed condition by mediating the toxicity of heavy metals through active efflux/reduction. Diverse metal-resistant genes or genes clusters (cop, cus, czc, zntand ars) were detected, which could confer resistance to soluble Au. Comparative genome analysis revealed that the majority of detected heavy-metal resistant genes were similar (i.e. orthologous) to those genes of Cupriavidus metallidurans CH34. The detection of heavy-metal resistance, nutrient cycling and biofilm formation genes (pgaABCD, bsmAandhmpS) may have indirect yet important roles when dealing with soluble Au during particle dissolution. In conclusion, the physiological and genomic results suggest that bacteria living on gold particles would likely use various genes to ensure survival during Au-biogeochemical cycling.
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Affiliation(s)
- Santonu Kumar Sanyal
- School of Biological Sciences, The University of Adelaide, North Terrace, Adelaide, South Australia 5005, Australia
- CSIRO Land & Water, Environmental Contaminant Mitigation and Technologies, Gate 4 Waite Road, Glen Osmond, South Australia 5064, Australia
| | - Frank Reith
- School of Biological Sciences, The University of Adelaide, North Terrace, Adelaide, South Australia 5005, Australia
- CSIRO Land & Water, Environmental Contaminant Mitigation and Technologies, Gate 4 Waite Road, Glen Osmond, South Australia 5064, Australia
| | - Jeremiah Shuster
- School of Biological Sciences, The University of Adelaide, North Terrace, Adelaide, South Australia 5005, Australia
- CSIRO Land & Water, Environmental Contaminant Mitigation and Technologies, Gate 4 Waite Road, Glen Osmond, South Australia 5064, Australia
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Tolbatov I, Coletti C, Marrone A, Re N. Insight into the Substitution Mechanism of Antitumor Au(I) N-Heterocyclic Carbene Complexes by Cysteine and Selenocysteine. Inorg Chem 2020; 59:3312-3320. [DOI: 10.1021/acs.inorgchem.0c00106] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Affiliation(s)
- Iogann Tolbatov
- Dipartimento di Farmacia, Università degli Studi “G. D’Annunzio” Chieti-Pescara, Via dei Vestini, I-66100 Chieti, Italy
| | - Cecilia Coletti
- Dipartimento di Farmacia, Università degli Studi “G. D’Annunzio” Chieti-Pescara, Via dei Vestini, I-66100 Chieti, Italy
| | - Alessandro Marrone
- Dipartimento di Farmacia, Università degli Studi “G. D’Annunzio” Chieti-Pescara, Via dei Vestini, I-66100 Chieti, Italy
| | - Nazzareno Re
- Dipartimento di Farmacia, Università degli Studi “G. D’Annunzio” Chieti-Pescara, Via dei Vestini, I-66100 Chieti, Italy
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'Mixing-and-measuring' surface-enhanced Raman scattering (SERS) detection of Bacillus cereus for potentially aiding gold mine field exploration. Talanta 2019; 204:44-49. [PMID: 31357318 DOI: 10.1016/j.talanta.2019.05.068] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2018] [Revised: 05/13/2019] [Accepted: 05/16/2019] [Indexed: 10/26/2022]
Abstract
Bacillus cereus, a common soil bacterium, has been shown to act as a biogeochemical indicator for concealed mineralisations, e.g., vein-type Au deposits. Field and cultivation-free detection of Bacillus cereus in the presence of Au3+ and other metal ions is significantly important but still almost blank in current biogeochemical prospecting of gold mine system. Herein, a self-established simple approach was slightly improved to make silver nanoparticles (Ag NPs) rapidly concentrated on every bacterial cell, and highly strong and distinct surface-enhanced Raman scattering (SERS) signals of Bacillus cereus free from any native fluorescence have been obtained in a so called 'mixing-and-measuring' manner. Furthermore, SERS was used for the first time to our knowledge to investigate the impacts of different concentrations of metal ions on Bacillus cereus, and successfully utilized for distinguishing Au3+ ions from other species. A more convincing multi-Raman criterion based on Raman bands, and further the entire Raman spectrum in combination with statistical analysis (e.g., principal component analysis (PCA)) were found capable of detecting spectral differences of Bacillus cereus in the presence of metal ions (Au3+, Ag+, Cu2+ and Zn2+) with different concentrations. An interesting phenomenon has been found that except for Au3+ ions, the highest permissive concentration of other metal ions for the detected Bacillus cereus is up to 10 μg/mL possibly due to their resistance to Au. The results also indicate that an effective biogeochemical exploration technique of SERS spectral response may be developed, where Bacillus cereus spore counts are measured in the field and used as a pre-screening method to target areas useful for further sampling and complete geochemical analysis.
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Tolbatov I, Re N, Coletti C, Marrone A. An Insight on the Gold(I) Affinity of golB Protein via Multilevel Computational Approaches. Inorg Chem 2019; 58:11091-11099. [DOI: 10.1021/acs.inorgchem.9b01604] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Affiliation(s)
- Iogann Tolbatov
- Dipartimento di Farmacia, Università “G d’Annunzio” di Chieti-Pescara, Via dei Vestini 31, Chieti, Italy
| | - Nazzareno Re
- Dipartimento di Farmacia, Università “G d’Annunzio” di Chieti-Pescara, Via dei Vestini 31, Chieti, Italy
| | - Cecilia Coletti
- Dipartimento di Farmacia, Università “G d’Annunzio” di Chieti-Pescara, Via dei Vestini 31, Chieti, Italy
| | - Alessandro Marrone
- Dipartimento di Farmacia, Università “G d’Annunzio” di Chieti-Pescara, Via dei Vestini 31, Chieti, Italy
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Sanyal SK, Shuster J, Reith F. Biogeochemical gold cycling selects metal-resistant bacteria that promote gold particle transformation. FEMS Microbiol Ecol 2019; 95:5499019. [DOI: 10.1093/femsec/fiz078] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2019] [Accepted: 05/23/2019] [Indexed: 11/14/2022] Open
Affiliation(s)
- Santonu Kumar Sanyal
- Department of Molecular & Biomedical Science, School of Biological Sciences,The University of Adelaide, Adelaide 5005, South Australia, Australia
- CSIRO Land and Water, Environmental Contaminant Mitigation and Technologies, PMB2, Glen Osmond 5064, South Australia, Australia
| | - Jeremiah Shuster
- Department of Molecular & Biomedical Science, School of Biological Sciences,The University of Adelaide, Adelaide 5005, South Australia, Australia
- CSIRO Land and Water, Environmental Contaminant Mitigation and Technologies, PMB2, Glen Osmond 5064, South Australia, Australia
| | - Frank Reith
- Department of Molecular & Biomedical Science, School of Biological Sciences,The University of Adelaide, Adelaide 5005, South Australia, Australia
- CSIRO Land and Water, Environmental Contaminant Mitigation and Technologies, PMB2, Glen Osmond 5064, South Australia, Australia
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15
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Reflecting on Gold Geomicrobiology Research: Thoughts and Considerations for Future Endeavors. MINERALS 2018. [DOI: 10.3390/min8090401] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
Research in gold (Au) geomicrobiology has developed extensively over the last ten years, as more Au-bearing materials from around the world point towards a consistent story: That microbes interact with Au. In weathering environments, Au is mobile, taking the form of oxidized, soluble complexes or reduced, elemental Au nanoparticles. The transition of Au between aqueous and solid states is attributed to varying geochemical conditions, catalyzed in part by the biosphere. Hence, a global Au-biogeochemical-cycle was proposed. The primary focus of this mini-review is to reflect upon the biogeochemical processes that contribute to what we currently know about Au cycling. In general, the global Au-biogeochemical-cycle begins with the liberation of gold-silver particles from a primary host rock, by physical weathering. Through oxidative-complexation, inorganic and organic soluble-Au complexes are produced. However, in the presence of microbes or other reductants—e.g., clays and Fe-oxides—these Au complexes can be destabilized. The reduction of soluble Au ultimately leads to the bioprecipitation and biomineralization of Au, the product of which can aggregate into larger structures, thereby completing the Au cycle. Evidence of these processes have been “recorded” in the preservation of secondary Au structures that have been observed on Au particles from around the world. These structures—i.e., nanometer-size to micrometer-size Au dissolution and reprecipitation features—are “snap shots” of biogeochemical influences on Au, during its journey in Earth-surface environments. Therefore, microbes can have a profound effect on the occurrence of Au in natural environments, given the nutrients necessary for microbial metabolism are sustained and Au is in the system.
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Progressive biogeochemical transformation of placer gold particles drives compositional changes in associated biofilm communities. FEMS Microbiol Ecol 2018; 94:4992300. [DOI: 10.1093/femsec/fiy080] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2018] [Accepted: 05/01/2018] [Indexed: 11/14/2022] Open
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17
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18
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Montero‐Silva F, Durán N, Seeger M. Synthesis of extracellular gold nanoparticles using
Cupriavidus metallidurans
CH34 cells. IET Nanobiotechnol 2017. [DOI: 10.1049/iet-nbt.2017.0185] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
Affiliation(s)
- Francisco Montero‐Silva
- Laboratorio de Microbiología Molecular y Biotecnología AmbientalDepartamento de Química & Centro de Biotecnología Daniel Alkalay LowittUniversidad Técnica Federico Santa MaríaValparaísoChile
| | - Nelson Durán
- Institute of ChemistryBiological Chemistry LaboratoryUniversidade Estadual de Campinas (UNICAMP) & Nanomedicine Research Unit (Nanomed), Federal University of ABC (UFABC)Santo AndréBrazil
| | - Michael Seeger
- Laboratorio de Microbiología Molecular y Biotecnología AmbientalDepartamento de Química & Centro de Biotecnología Daniel Alkalay LowittUniversidad Técnica Federico Santa MaríaValparaísoChile
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19
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Cerminati S, Giri GF, Mendoza JI, Soncini FC, Checa SK. The CpxR/CpxA system contributes to Salmonella gold-resistance by controlling the GolS-dependent gesABC transcription. Environ Microbiol 2017. [PMID: 28631419 DOI: 10.1111/1462-2920.13837] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Several regulatory systems contribute to bacterial resistance to heavy metals controlling the expression of factors required to eliminate the intoxicant and/or to repair the damage caused by it. In Salmonella, the response to Au ions is mediated by the specific metalloregulator GolS that, among other genes, controls the expression of the RND-efflux pump GesABC. In this work, we demonstrate that CpxR/CpxA, a main cell-envelope stress-responding system, promotes gesABC transcription in the presence of Au ions at neutral pH. Deletion of either cpxA or cpxR, or mutation of the CpxR-binding site identified upstream of the GolS-operator in the gesABC promoter region reduces but does not abrogate the GolS- and Au-dependent activation of gesABC. Au also triggers the activation of the CpxR/CpxA system and deletion of the cpxRA operon severely reduces survival in the presence of the toxic metal. Our results indicate that the coordinated action of GolS and CpxR/CpxA contribute to protecting the cell from severe Au damage.
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Affiliation(s)
- Sebastián Cerminati
- Instituto de Biología Molecular y Celular de Rosario (IBR), Universidad Nacional de Rosario (UNR), CONICET y Departamento de Microbiología, Facultad de Ciencias Bioquímicas y Farmacéuticas, UNR, Ocampo y Esmeralda, Rosario, Argentina
| | - Germán F Giri
- Instituto de Biología Molecular y Celular de Rosario (IBR), Universidad Nacional de Rosario (UNR), CONICET y Departamento de Microbiología, Facultad de Ciencias Bioquímicas y Farmacéuticas, UNR, Ocampo y Esmeralda, Rosario, Argentina
| | - Julián I Mendoza
- Instituto de Biología Molecular y Celular de Rosario (IBR), Universidad Nacional de Rosario (UNR), CONICET y Departamento de Microbiología, Facultad de Ciencias Bioquímicas y Farmacéuticas, UNR, Ocampo y Esmeralda, Rosario, Argentina
| | - Fernando C Soncini
- Instituto de Biología Molecular y Celular de Rosario (IBR), Universidad Nacional de Rosario (UNR), CONICET y Departamento de Microbiología, Facultad de Ciencias Bioquímicas y Farmacéuticas, UNR, Ocampo y Esmeralda, Rosario, Argentina
| | - Susana K Checa
- Instituto de Biología Molecular y Celular de Rosario (IBR), Universidad Nacional de Rosario (UNR), CONICET y Departamento de Microbiología, Facultad de Ciencias Bioquímicas y Farmacéuticas, UNR, Ocampo y Esmeralda, Rosario, Argentina
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20
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An investigation of the antibacterial ability and cytotoxicity of a novel cu-bearing 317L stainless steel. Sci Rep 2016; 6:29244. [PMID: 27385507 PMCID: PMC4935851 DOI: 10.1038/srep29244] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2016] [Accepted: 06/14/2016] [Indexed: 11/08/2022] Open
Abstract
In order to solve the challenging problem of microbial infections caused by microorganisms on medical implants, it is imperative to develop novel antimicrobial biomaterials. This work demonstrated that 317L-Cu stainless steel (SS), created by adding copper through a solution and aging heat treatment process, exhibited good antibacterial properties against staphylococcus aureus, achieving 2 log reduction of planktonic cells after 5 days of incubation. In this study, the antibacterial test was performed using the plate count method, the fluorescence cell staining method and the quantitative polymerase chain reaction (qPCR) method. It is well known that a high concentration of copper ion can lead to cytotoxicity. This work explored the cytotoxicity of 317L-Cu SS through real-time cell analysis (RTCA). Experimental results demonstrated that the 317L-Cu SS possessed a satisfactory antibacterial ability against S. aureus, and the antibacterial rate based on the reduction of sessile cell count reached 98.3% after 24-hour treatment. The bacterial adhesion and the biofilm thickness were considerably reduced by the 317L-Cu SS. The results of RTCA suggested that 317L-Cu SS did not introduce cytotoxicity to mouse cells, indicating its suitability as a medical implant material.
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21
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Low WL, Kenward K, Britland ST, Amin MC, Martin C. Essential oils and metal ions as alternative antimicrobial agents: a focus on tea tree oil and silver. Int Wound J 2016; 14:369-384. [PMID: 27146784 DOI: 10.1111/iwj.12611] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2015] [Revised: 04/04/2016] [Accepted: 04/06/2016] [Indexed: 01/22/2023] Open
Abstract
The increasing occurrence of hospital-acquired infections and the emerging problems posed by antibiotic-resistant microbial strains have both contributed to the escalating cost of treatment. The presence of infection at the wound site can potentially stall the healing process at the inflammatory stage, leading to the development of a chronic wound. Traditional wound treatment regimes can no longer cope with the complications posed by antibiotic-resistant strains; hence, there is a need to explore the use of alternative antimicrobial agents. Pre-antibiotic compounds, including heavy metal ions and essential oils, have been re-investigated for their potential use as effective antimicrobial agents. Essential oils have potent antimicrobial, antifungal, antiviral, anti-inflammatory, antioxidant and other beneficial therapeutic properties. Similarly, heavy metal ions have also been used as disinfecting agents because of their broad spectrum activities. Both of these alternative antimicrobials interact with many different intracellular components, thereby resulting in the disruption of vital cell functions and eventually cell death. This review will discuss the application of essential oils and heavy metal ions, particularly tea tree oil and silver ions, as alternative antimicrobial agents for the treatment of chronic, infected wounds.
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Affiliation(s)
- Wan-Li Low
- School of Pharmacy, University of Wolverhampton, Wolverhampton, UK
| | - Ken Kenward
- School of Pharmacy, University of Wolverhampton, Wolverhampton, UK
| | - Stephen T Britland
- School of Pharmacy, University of Wolverhampton, Wolverhampton, UK.,Research Institute in Healthcare Science, Faculty of Science and Engineering, University of Wolverhampton, Wolverhampton, UK
| | - Mohd Cim Amin
- Faculty of Pharmacy, Universiti Kebangsaan Malaysia, Kuala Lumpur, Malaysia
| | - Claire Martin
- School of Pharmacy, University of Wolverhampton, Wolverhampton, UK.,Research Institute in Healthcare Science, Faculty of Science and Engineering, University of Wolverhampton, Wolverhampton, UK
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22
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In Situ Analysis of a Silver Nanoparticle-Precipitating Shewanella Biofilm by Surface Enhanced Confocal Raman Microscopy. PLoS One 2015; 10:e0145871. [PMID: 26709923 PMCID: PMC4692441 DOI: 10.1371/journal.pone.0145871] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2015] [Accepted: 12/09/2015] [Indexed: 11/19/2022] Open
Abstract
Shewanella oneidensis MR-1 is an electroactive bacterium, capable of reducing extracellular insoluble electron acceptors, making it important for both nutrient cycling in nature and microbial electrochemical technologies, such as microbial fuel cells and microbial electrosynthesis. When allowed to anaerobically colonize an Ag/AgCl solid interface, S. oneidensis has precipitated silver nanoparticles (AgNp), thus providing the means for a surface enhanced confocal Raman microscopy (SECRaM) investigation of its biofilm. The result is the in-situ chemical mapping of the biofilm as it developed over time, where the distribution of cytochromes, reduced and oxidized flavins, polysaccharides and phosphate in the undisturbed biofilm is monitored. Utilizing AgNp bio-produced by the bacteria colonizing the Ag/AgCl interface, we could perform SECRaM while avoiding the use of a patterned or roughened support or the introduction of noble metal salts and reducing agents. This new method will allow a spatially and temporally resolved chemical investigation not only of Shewanella biofilms at an insoluble electron acceptor, but also of other noble metal nanoparticle-precipitating bacteria in laboratory cultures or in complex microbial communities in their natural habitats.
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23
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Advances in microbial biosynthesis of metal nanoparticles. Appl Microbiol Biotechnol 2015; 100:521-34. [PMID: 26300292 DOI: 10.1007/s00253-015-6904-7] [Citation(s) in RCA: 81] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2015] [Revised: 07/30/2015] [Accepted: 07/31/2015] [Indexed: 01/30/2023]
Abstract
Metal nanoparticles are garnering considerable attention owing to their high potential for use in various applications in the material, electronics, and energy industries. Recent research efforts have focused on the biosynthesis of metal nanomaterials using microorganisms rather than traditional chemical synthesis methods. Microorganisms have evolved to possess molecular machineries for detoxifying heavy metals, mainly by employing metal-binding proteins and peptides. Biosynthesis of diverse metal nanoparticles has recently been demonstrated using such heavy metal detoxification systems in microorganisms, which provides several advantages over the traditional chemical synthesis methods. First, metal nanoparticles can be synthesized at mild temperatures, such as at room temperature, with less energy input. Second, no toxic chemicals or reagents are needed, and thus the process is environmentally friendly. Third, diverse metal nanoparticles, including those that have never been chemically synthesized, can be biosynthesized. Here, we review the strategies for the biosynthesis of metal nanoparticles using microorganisms, and provide future prospects.
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Lei B, Zhang X, Zhu M, Tan W. Effect of fluid shear stress on catalytic activity of biopalladium nanoparticles produced by Klebsiella Pneumoniae ECU-15 on Cr(VI) reduction reaction. BIORESOUR BIOPROCESS 2014. [DOI: 10.1186/s40643-014-0028-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
Abstract
Background
Biopalladium (bioPd(0)) nanoparticles on Klebsiella Pneumoniae ECU-15 were synthesized mainly on the microorganism's surface. Data suggest that the resistance of mass transfer around the cell surface region plays a critical role in bioPd(0) synthesis process. However, the mechanisms for its role remains elusive.
Results
The experimental results indicated that 1) diffusion resistance existed around the microorganism's cell in reaction vessel and 2) fluid shear stress affected the mass transfer rates differently according to its strength and thus had varying effects on the bioPd(0) synthesis. More than 97.9 ± 1.5% Chromium(VI)(Cr(VI)) (384 μM) was reduced to Cr(III) within 20 min with 5% Pd/bioPd(0) as catalyst, which was generated by the K. Pneumoniae ECU-15, and the catalytic performance of Pd/bioPd(0) was stable over 6 months. The optimal condition of bioreduction of Pd(II) to Pd(0) was determined at the Kolmogorov eddy length of 7.33 ± 0.5 μm and lasted for 1 h in the extended reduction process after the usual adsorption and reduction process.
Conclusions
It is concluded that a high bioPd(0) catalytic activity can be achieved by controlling the fluid shear stress intensity in an extended reduction process in the bioreactor.
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25
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Shuster J, Marsden S, Maclean LCW, Ball J, Bolin T, Southam G. The immobilization of gold from gold (III) chloride by a halophilic sulphate-reducing bacterial consortium. ACTA ACUST UNITED AC 2013. [DOI: 10.1144/sp393.2] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
AbstractA consortium containing halophilic, dissimilatory sulphate-reducing bacteria was enriched from Basque Lake #1, located near Ashcroft, British Columbia, Canada to evaluate the role these bacteria have on the immobilization of soluble gold. The consortium immobilized increasing amounts of gold from gold (III) chloride solutions, under saline to hypersaline conditions, over time. Gold (III) chloride was reduced to elemental gold in all experimental systems. Salinity did not affect gold immobilization. Scanning electron microscopy and transmission electron microscopy demonstrated that reduced gold (III) chloride was immobilized as c. 3–10 nm gold colloids and c. 100 nm colloidal aggregates at the fluid–biofilm interface. The precipitation of gold at this organic interface protected cells within the biofilm from the ‘toxic effect’ of ionic gold. Analysis of these experimental systems using X-ray absorption near-edge spectroscopy confirmed that elemental gold with varying colloidal sizes formed within minutes. The immobilization of gold by halophilic sulphate-reducing bacteria highlights a possible role for the biosphere in ‘intercepting’ mobile gold complexes within natural, hydraulic flow paths. Based on the limited toxicity demonstrated in this experimental model, significant concentrations of elemental gold could accumulate over geological time in natural systems where soluble gold concentrations are more dilute and presumably ‘non-toxic’ to the biosphere.
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Affiliation(s)
- Jeremiah Shuster
- Department of Earth Sciences, The University of Western Ontario, London, ON, Canada N6A 5B7
| | - Sian Marsden
- Department of Geological Sciences, Queen's University, Kingston, ON, Canada K7L 3N6
| | | | - James Ball
- Physics Department, John F. Ross Collegiate Vocational Institute, Guelph, ON, Canada N1E 4H1
| | - Trudy Bolin
- CMC-XOR-Sector 9, Advanced Photon Source, Argonne Laboratory, Argonne, IL 60439, USA
| | - Gordon Southam
- School of Earth Sciences, The University of Queensland, St Lucia, QLD 4072, Australia
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26
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Inorganic materials using 'unusual' microorganisms. Adv Colloid Interface Sci 2012; 179-182:150-68. [PMID: 22818492 DOI: 10.1016/j.cis.2012.06.013] [Citation(s) in RCA: 74] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2011] [Revised: 06/06/2012] [Accepted: 06/27/2012] [Indexed: 11/23/2022]
Abstract
A promising avenue of research in materials science is to follow the strategies used by Mother Nature to fabricate ornate hierarchical structures as exemplified by organisms such as diatoms, sponges and magnetotactic bacteria. Some of the strategies used in the biological world to create functional inorganic materials may well have practical implications in the world of nanomaterials. Therefore, the strive towards exploring nature's ingenious work for designing strategies to create inorganic nanomaterials in our laboratories has led to development of biological and biomimetic synthesis routes over the past decade or so. A large proportion of these relentless efforts have explored the use of those microorganisms, which are typically not known to encounter these inorganic materials in their natural environment. Therefore, one can consider these microorganisms as 'unusual' for the purpose for which they have been utilized - it is in this context that this review has been penned down. In this extensive review, we discuss the use of these 'unusual' microorganisms for deliberate biosynthesis of various nanomaterials including biominerals, metals, sulfides and oxides nanoparticles. In addition to biosynthesis approach, we have also discussed a bioleaching approach, which can provide a noble platform for room-temperature synthesis of inorganic nanomaterials using naturally available raw materials. Moreover, the unique properties and functionalities displayed by these biogenic inorganic materials have been discussed, wherever such properties have been investigated previously. Finally, towards the end of this review, we have made efforts to summarize the common outcomes of the biosynthesis process and draw conclusions, which provide a perspective on the current status of the biosynthesis research field and highlights areas where future research in this field should be directed to realize the full potential of biological routes towards nanomaterials synthesis. Furthermore, the review clearly demonstrates that the biological route to inorganic materials synthesis is not merely an addition to the existing list of synthesis routes; biological routes using 'unusual' microorganisms might in fact provide an edge over other nanomaterials synthesis routes in terms of their eco-friendliness, low energy intensiveness, and economically-viable synthesis. This review has significant importance for colloids and interface science since it underpins the synthesis of colloidal materials using 'unusual' microorganism, wherein the role of biological interfaces for controlled synthesis of technologically important nanomaterials is clearly evident.
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Boopathi S, Gopinath S, Boopathi T, Balamurugan V, Rajeshkumar R, Sundararaman M. Characterization and Antimicrobial Properties of Silver and Silver Oxide Nanoparticles Synthesized by Cell-Free Extract of a Mangrove-Associated Pseudomonas aeruginosa M6 Using Two Different Thermal Treatments. Ind Eng Chem Res 2012. [DOI: 10.1021/ie3001869] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Seenivasan Boopathi
- Department of Marine Biotechnology,
National Facility
for Marine Cyanobacteria, Bharathidasan University, Tiruchirappalli−620
024, Tamilnadu, India
| | - Selvaraj Gopinath
- Department of Marine Biotechnology,
National Facility
for Marine Cyanobacteria, Bharathidasan University, Tiruchirappalli−620
024, Tamilnadu, India
| | - Thangavelu Boopathi
- Department of Marine Biotechnology,
National Facility
for Marine Cyanobacteria, Bharathidasan University, Tiruchirappalli−620
024, Tamilnadu, India
| | - Vadivel Balamurugan
- Department of Marine Biotechnology,
National Facility
for Marine Cyanobacteria, Bharathidasan University, Tiruchirappalli−620
024, Tamilnadu, India
| | - Radhakrishnan Rajeshkumar
- Department of Marine Biotechnology,
National Facility
for Marine Cyanobacteria, Bharathidasan University, Tiruchirappalli−620
024, Tamilnadu, India
| | - Muthuraman Sundararaman
- Department of Marine Biotechnology,
National Facility
for Marine Cyanobacteria, Bharathidasan University, Tiruchirappalli−620
024, Tamilnadu, India
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Wei H, Wang Z, Zhang J, House S, Gao YG, Yang L, Robinson H, Tan LH, Xing H, Hou C, Robertson IM, Zuo JM, Lu Y. Time-dependent, protein-directed growth of gold nanoparticles within a single crystal of lysozyme. NATURE NANOTECHNOLOGY 2011; 6:93-97. [PMID: 21278750 DOI: 10.1038/nnano.2010.280] [Citation(s) in RCA: 116] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2010] [Accepted: 12/13/2010] [Indexed: 05/30/2023]
Abstract
Gold nanoparticles are useful in biomedical applications due to their distinct optical properties and high chemical stability. Reports of the biogenic formation of gold colloids from gold complexes has also led to an increased level of interest in the biomineralization of gold. However, the mechanism responsible for biomolecule-directed gold nanoparticle formation remains unclear due to the lack of structural information about biological systems and the fast kinetics of biomimetic chemical systems in solution. Here we show that intact single crystals of lysozyme can be used to study the time-dependent, protein-directed growth of gold nanoparticles. The protein crystals slow down the growth of the gold nanoparticles, allowing detailed kinetic studies to be carried out, and permit a three-dimensional structural characterization that would be difficult to achieve in solution. Furthermore, we show that additional chemical species can be used to fine-tune the growth rate of the gold nanoparticles.
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Affiliation(s)
- Hui Wei
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
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Abstract
Gold ions are mobilized and disseminated through the environment and enter into the cells by non-specific intake. To avoid deleterious effect that occurs even at very low concentrations, bacteria such as Salmonella enterica and Cupriavidus metallidurans use Au-specific MerR-type transcriptional regulators to detect the presence of these toxic ions, and control the expression of specific resistance factors. In contrast to the related copper sensor CueR, the Au-selective metalloregulatory proteins are able to distinguish Au(I) from Cu(I) or Ag(I). This is achieved by finely tuning a single dithiolate metal coordination with conserved cysteine residues at the metal binding site of the proteins to lower the affinity for Cu(I) in comparison to the Cu-sensors, while maintaining or even increasing the affinity for Au(I). In Salmonella, GolS not only privileges the binding of Au(I) over Cu(I) or Ag(I), but also distinguishes its target recognition sites in its regulated promoters minimizing cross-activation of CueR-controlled operators. In this sense, the presence of a selective Au sensory devise would allow species harbouring resident Cu-homeostasis systems to eliminate the toxic ion without affecting Cu acquisition in Au rich environments.
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Hunter RC, Phoenix VR, Saxena A, Beveridge TJ. Impact of growth environment and physiological state on metal immobilization by Pseudomonas aeruginosa PAO1. Can J Microbiol 2010; 56:527-38. [PMID: 20651852 DOI: 10.1139/w10-038] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Environmental growth conditions and cell physiology have the potential to influence bacterial surface-metal interactions in both planktonic and biofilm systems. Here, Pseudomonas aeruginosa was studied to determine the influence of these factors (pH, redox potential, and active respiration) on surface electrostatics and metal immobilization. Acid-base titrations revealed a decrease in ionizable ligands at pKa 5 (putative carboxyls) in cells grown below pH 6.2 and in cells grown anaerobically relative to cells grown under oxic and circumneutral pH conditions. This observation correlates with Western immunoblotting assays that revealed a reduction in carboxylated B-band lipopolysaccharide in these cells. Furthermore, spectrophotometric analysis revealed a decrease in zinc, copper, and iron immobilization in these cells, suggesting that lipopolysaccharide modification in response to environmental stimuli influences metal binding. The effect of active versus inactive metabolism on metal adsorption was also examined using respiration inhibitors carbonyl cyanide m-chlorophenylhydrazone and sodium azide. Cells treated with these compounds bound more zinc, copper, and iron than untreated controls, suggesting proton extrusion through respiration competes with metal cations for reactive groups on the cell surface. Accumulation of gold did not show the same trend, and transmission electron microscopy studies confirmed it was not a surface-mediated process. These results suggest that variations in growth environment and cell physiology influence metal accumulation by bacterial cell surfaces and may help to explain discontinuous accumulation of metal observed throughout microbial communities.
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Affiliation(s)
- Ryan C Hunter
- Department of Molecular and Cellular Biology, University of Guelph, ON, Canada.
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González-Muñoz MT, Rodriguez-Navarro C, Martínez-Ruiz F, Arias JM, Merroun ML, Rodriguez-Gallego M. Bacterial biomineralization: new insights from Myxococcus-induced mineral precipitation. ACTA ACUST UNITED AC 2010. [DOI: 10.1144/sp336.3] [Citation(s) in RCA: 68] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
AbstractBacteria have contributed to the formation of minerals since the advent of life on Earth. Bacterial biomineralization plays a critical role on biogeochemical cycles and has important technological and environmental applications. Despite the numerous efforts to better understand how bacteria induce/mediate or control mineralization, our current knowledge is far from complete. Considering that the number of recent publications on bacterial biomineralization has been overwhelming, here we attempt to show the importance of bacteria–mineral interactions by focusing in a single bacterial genus, Myxococcus, which displays an unusual capacity of producing minerals of varying compositions and morphologies. First, an overview of the recent history of bacterial mineralization, the most common bacteriogenic minerals and current models on bacterial biomineralization is presented. Afterwards a description of myxobacteria is presented, followed by a section where Myxococcus-induced precipitation of a number of phosphates, carbonates, sulphates, chlorides, oxalates and silicates is described and discussed in lieu of the information presented in the first part. As concluding remarks, implications of bacterial mineralization and perspectives for future research are outlined. This review strives to show that the mechanisms which control bacterial biomineralization are not mineral- or bacterial-specific. On the contrary, they appear to be universal and depend on the environment in which bacteria dwell.
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Affiliation(s)
| | - Carlos Rodriguez-Navarro
- Departamento de Mineralogía y Petrología, Universidad de Granada, Fuentenueva s/n, 18002, Granada, Spain
| | - Francisca Martínez-Ruiz
- Instituto Andaluz de Ciencias de la Tierra, CSIC – Universidad de Granada, Fuentenueva s/n, 18002, Granada, Spain
| | - Jose Maria Arias
- Departamento de Microbiología, Universidad de Granada, Fuentenueva s/n, 18002, Granada, Spain
| | - Mohamed L. Merroun
- Institute of Radiochemistry, Forschungszentrum Dresden-Rossendorf, D–01314, Dresden, Germany; Present address: Departamento de Microbiología, Universidad de Granada, Granada, Spain
| | - Manuel Rodriguez-Gallego
- Departamento de Mineralogía y Petrología, Universidad de Granada, Fuentenueva s/n, 18002, Granada, Spain
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Iwai S, Doi K, Fujino Y, Nakazono T, Fukuda K, Motomura Y, Ogata S. Silica deposition and phenotypic changes to Thermus thermophilus cultivated in the presence of supersaturated silicia. ISME JOURNAL 2010; 4:809-16. [DOI: 10.1038/ismej.2010.12] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Hennebel T, De Gusseme B, Boon N, Verstraete W. Biogenic metals in advanced water treatment. Trends Biotechnol 2009; 27:90-8. [DOI: 10.1016/j.tibtech.2008.11.002] [Citation(s) in RCA: 140] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2008] [Revised: 10/31/2008] [Accepted: 11/03/2008] [Indexed: 10/21/2022]
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Deplanche K, Macaskie LE. Biorecovery of gold by Escherichia coli and Desulfovibrio desulfuricans. Biotechnol Bioeng 2008; 99:1055-64. [PMID: 17969152 DOI: 10.1002/bit.21688] [Citation(s) in RCA: 125] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Microbial precipitation of gold was achieved using Escherichia coli and Desulfovibrio desulfuricans provided with H2 as the electron donor. No precipitation was observed using H2 alone or with heat-killed cells. Reduction of aqueous AuIII ions by both strains was demonstrated at pH 7 using 2 mM HAuCl4 solution and the concept was successfully applied to recover 100% of the gold from acidic leachate (115 ppm of AuIII) obtained from jewelry waste. Bioreductive recovery of gold from aqueous solution was achieved within 2 h, giving crystalline Au0 particles (20-50 nm), in the periplasmic space and on the cell surface, and small intracellular nanoparticles. The nanoparticle size was smaller (red suspension) at acidic pH (2.0) as compared to that obtained at pH 6.0 and 7.0 (purple) and 9.0 (dark blue). Comparable nanoparticles were obtained from AuIII test solutions and jewelry leachate.
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Affiliation(s)
- K Deplanche
- Unit of Functional Biomaterials, School of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, United Kingdom
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Reith F, Lengke MF, Falconer D, Craw D, Southam G. The geomicrobiology of gold. ISME JOURNAL 2007; 1:567-84. [DOI: 10.1038/ismej.2007.75] [Citation(s) in RCA: 166] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Da Re S, Le Quéré B, Ghigo JM, Beloin C. Tight modulation of Escherichia coli bacterial biofilm formation through controlled expression of adhesion factors. Appl Environ Microbiol 2007; 73:3391-403. [PMID: 17384304 PMCID: PMC1907114 DOI: 10.1128/aem.02625-06] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023] Open
Abstract
Despite the economic and sanitary problems caused by harmful biofilms, biofilms are nonetheless used empirically in industrial environmental and bioremediation processes and may be of potential use in medical settings for interfering with pathogen development. Escherichia coli is one of the bacteria with which biofilm formation has been studied in great detail, and it is especially appreciated for biotechnology applications because of its genetic amenability. Here we describe the development of two new genetic tools enabling the constitutive and inducible expression of any gene or operon of interest at its native locus. In addition to providing valuable tools for complementation and overexpression experiments, these two compact genetic cassettes were used to modulate the biofilm formation capacities of E. coli by taking control of two biofilm-promoting factors, autotransported antigen 43 adhesin and the bscABZC cellulose operon. The modulation of the biofilm formation capacities of E. coli or those of other bacteria capable of being genetically manipulated may be of use both for reducing and for improving the impact of biofilms in a number of industrial and medical applications.
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Affiliation(s)
- Sandra Da Re
- Groupe de Génétique des Biofilms, CNRS URA 2172, Institut Pasteur, 25 rue du Dr. Roux, 75724 Paris Cedex 15, France
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Abstract
Bacterial biofilms are associated with secondary gold grains from two sites in Australia. 16S ribosomal DNA clones of the genus Ralstonia that bear 99% similarity to the bacterium Ralstonia metallidurans-shown to precipitate gold from aqueous gold(III) tetrachloride-were present on all DNA-positive gold grains but were not detected in the surrounding soils. These results provide evidence for the bacterial contribution to the authigenic formation of secondary bacterioform gold grains and nuggets.
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Affiliation(s)
- Frank Reith
- Cooperative Research Centre for Landscape Environments and Mineral Exploration, Post Office Box 1130, Bentley, Western Australia 6102, Australia.
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Hunter RC, Beveridge TJ. High-resolution visualization of Pseudomonas aeruginosa PAO1 biofilms by freeze-substitution transmission electron microscopy. J Bacteriol 2005; 187:7619-30. [PMID: 16267286 PMCID: PMC1280322 DOI: 10.1128/jb.187.22.7619-7630.2005] [Citation(s) in RCA: 73] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2005] [Accepted: 08/28/2005] [Indexed: 11/20/2022] Open
Abstract
High-pressure freeze-substitution and transmission electron microscopy have been used for high-resolution imaging of the natural structure of a gram-negative biofilm. Unlike more conventional embedding techniques, this method confirms many of the observations seen by confocal microscopy but with finer structural detail. It further reveals that there is a structural complexity to biofilms at both the cellular and extracellular matrix levels that has not been seen before. Different domains of healthy and lysed cells exist randomly dispersed within a single biofilm as well as different structural organizations of exopolymers. Particulate matter is suspended within this network of fibers and appears to be an integral part of the exopolymeric substance (EPS). O-side chains extending from the outer membrane are integrated into EPS polymers so as to form a continuum. Together, the results support the concept of physical microenvironments within biofilms and show a complexity that was hitherto unknown.
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Affiliation(s)
- Ryan C Hunter
- Department of Molecular & Cellular Biology, College of Biological Science, University of Guelph, Ontario, Canada.
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Hunter RC, Beveridge TJ. Application of a pH-sensitive fluoroprobe (C-SNARF-4) for pH microenvironment analysis in Pseudomonas aeruginosa biofilms. Appl Environ Microbiol 2005; 71:2501-10. [PMID: 15870340 PMCID: PMC1087576 DOI: 10.1128/aem.71.5.2501-2510.2005] [Citation(s) in RCA: 131] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
An important feature of microbial biofilms is the development of four-dimensional physical and chemical gradients in space and time. There is need for novel approaches to probe these so-called microenvironments to determine their effect on biofilm-specific processes. In this study, we describe the use of seminaphthorhodafluor-4F 5-(and-6) carboxylic acid (C-SNARF-4) for pH microenvironment analysis in Pseudomonas aeruginosa biofilms. C-SNARF-4 is a fluorescent ratiometric probe that allows pH quantification independent of probe concentration and/or laser intensity. By confocal scanning laser microscopy, C-SNARF-4 revealed pH heterogeneity throughout the biofilm in both the x,y and x,z planes, with values ranging from pH 5.6 (within the biofilm) to pH 7.0 (bulk fluid). pH values were typically remarkably different than those just a few micrometers away. Although this probe has been successfully used in a number of eukaryotic systems, problems have been reported which describe spectral emission changes as a result of macromolecular interactions with the fluorophore. To assess how the biofilm environment may influence fluorescent properties of the dye, fluorescence of C-SNARF-4 was quantified via spectrofluorometry while the probe was suspended in various concentrations of representative biofilm matrix components (i.e., proteins, polysaccharides, and bacterial cells) and growth medium. Surprisingly, our data demonstrate that few changes in emission spectra occur as a result of matrix interactions below pH 7. These studies suggest that C-SNARF-4 can be used as a reliable indicator of pH microenvironments, which may help elucidate their influence on the medical and geobiological roles of natural biofilms.
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Affiliation(s)
- Ryan C Hunter
- Department of Microbiology, University of Guelph, Guelph, Ontario N1G 2W1, Canada.
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De Windt W, Aelterman P, Verstraete W. Bioreductive deposition of palladium (0) nanoparticles on Shewanella oneidensis with catalytic activity towards reductive dechlorination of polychlorinated biphenyls. Environ Microbiol 2005; 7:314-25. [PMID: 15683392 DOI: 10.1111/j.1462-2920.2005.00696.x] [Citation(s) in RCA: 195] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Abstract
Microbial reduction of soluble Pd(II) by cells of Shewanella oneidensis MR-1 and of an autoaggregating mutant (COAG) resulted in precipitation of palladium Pd(0) nanoparticles on the cell wall and inside the periplasmic space (bioPd). As a result of biosorption and subsequent bioreduction of Pd(II) with H2, formate, lactate, pyruvate or ethanol as electron donors, recoveries higher than 90% of Pd associated with biomass could be obtained. The bioPd(0) nanoparticles thus obtained had the ability to reductively dehalogenate polychlorinated biphenyl (PCB) congeners in aqueous and sediment matrices. Bioreduction was observed in assays with concentrations up to 1000 mg Pd(II) l(-1) with depletion of soluble Pd(II) of 77.4% and higher. More than 90% decrease of PCB 21 (2,3,4-chloro biphenyl) coupled to formation of its dechlorination products PCB 5 (2,3-chloro biphenyl) and PCB 1 (2-chloro biphenyl) was obtained at a concentration of 1 mg l(-1) within 5 h at 28 degrees C. Bioreductive precipitation of bioPd by S. oneidensis cells mixed with sediment samples contaminated with a mixture of PCB congeners, resulted in dechlorination of both highly and lightly chlorinated PCB congeners adsorbed to the contaminated sediment matrix within 48 h at 28 degrees C. Fifty milligrams per litre of bioPd resulted in a catalytic activity that was comparable to 500 mg l(-1) commercial Pd(0) powder. The high reactivity of 50 mg l(-1) bioPd in the soil suspension was reflected in the reduction of the sum of seven most toxic PCBs to 27% of their initial concentration.
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Affiliation(s)
- Wim De Windt
- Laboratory of Microbial Ecology and Technology (LabMET), Ghent University, Coupure Links 653, B-9000 Gent, Belgium
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Santamaría M, Díaz-Marrero AR, Hernández J, Gutiérrez-Navarro AM, Corzo J. Effect of thorium on the growth and capsule morphology of Bradyrhizobium. Environ Microbiol 2004; 5:916-24. [PMID: 14510845 DOI: 10.1046/j.1462-2920.2003.00487.x] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
The thorium effect on Bradyrhizobium growth was assayed in liquid media. Th4+ inhibited the growth of Bradyrhizobium (Chamaecytisus) BGA-1, but this effect decreased in the presence of suspensions of live or dead bacterial cells. Th4+ induced the formation of a gel-like precipitate when added to a dense suspension of B. (Chamaecytisus) BGA-1 cells. Viable Bradyrhizobium cells remained in suspension after precipitate formation. Thorium was recovered in the precipitate, in which polysaccharide, lipopolysaccharide and proteins were also found. After Th4+ addition, the morphology of B. (Chamaecytisus) BGA-1 or Bradyrhizobium japonicum USDA 110 sedimented cells studied by scanning electron microscopy changed from an entangled network of capsulated bacteria to uncapsulated individual cells and an amorphous precipitate. Energy-dispersive X-ray spectroscopy showed that thorium was mainly in the amorphous fraction. Precipitate was also formed between B. (Chamaecytisus) BGA-1 and Al3+, which was also toxic to this bacterium. Precipitate induced by Th4+ or Al3+ was found in all Bradyrhizobium and Sinorhizobium strains tested, but not in Rhizobium, Salmonella typhimurium, Aerobacter aerogenes or Escherichia coli. These results suggest a specific defence mechanism based on metal precipitation by extracellular polymers.
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Affiliation(s)
- Mónica Santamaría
- Departamento de Bioquímica y Biología Molecular, Universidad de La Laguna, Tenerife, Spain
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