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Lee S, Jeong YT, Jang S, Jung T, Hwang BS, Choi JS, Oh YT, Mannaa M, Seo YS. High-Throughput Screening of Plant Extracts for Targeted Control of Burkholderia glumae, Causing Rice Sheath and Panicle Blight. THE PLANT PATHOLOGY JOURNAL 2025; 41:112-119. [PMID: 39916420 PMCID: PMC11834560 DOI: 10.5423/ppj.nt.10.2024.0167] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2024] [Revised: 12/17/2024] [Accepted: 12/17/2024] [Indexed: 02/20/2025]
Abstract
Rice (Oryza sativa), a staple crop worldwide, is severely threatened by bacterial panicle blight caused by Burkholderia glumae, leading to substantial yield losses. The lack of effective chemical treatments and resistant rice cultivars highlights the urgent need for alternative solutions. In this study, 1,134 plant extracts were screened for antibacterial activity against B. glumae using agar disc diffusion and liquid broth assays. Thirty-three extracts exhibited significant growth inhibition on agar plates. These 33 extracts were further tested in Luria- Bertani broth, where five showed notable activity, and two extracts-Trapa japonica (FBCC-EP312) and Rumex crispus (FBCC-EP487)-were selected for detailed analysis. Both extracts significantly reduced bacterial motility and disease severity in rice, while having no effect on non-target bacteria such as Escherichia coli. These findings highlight the potential of these plant-derived compounds as effective biocontrol agents, offering an eco-friendly alternative to synthetic pesticides and promising applications in sustainable agriculture.
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Affiliation(s)
- Seungchul Lee
- Department of Integrated Biological Science, Pusan National University, Busan 46241, Korea
| | - Yong Tae Jeong
- Nakdonggang National Institute of Biological Resources, Sangju 37242, Korea
| | - Seokhun Jang
- Department of Integrated Biological Science, Pusan National University, Busan 46241, Korea
| | - Taeho Jung
- Department of Integrated Biological Science, Pusan National University, Busan 46241, Korea
| | - Buyng Su Hwang
- Nakdonggang National Institute of Biological Resources, Sangju 37242, Korea
| | - Ji Su Choi
- Nakdonggang National Institute of Biological Resources, Sangju 37242, Korea
| | - Young Taek Oh
- Nakdonggang National Institute of Biological Resources, Sangju 37242, Korea
| | - Mohamed Mannaa
- Department of Integrated Biological Science, Pusan National University, Busan 46241, Korea
- Institude of System Biology, Pusan National University, Busan 46241, Korea
- Department of Plant Pathology, Faculty of Agriculture, Cairo University, Giza 12613, Egypt
| | - Young-Su Seo
- Department of Integrated Biological Science, Pusan National University, Busan 46241, Korea
- Institude of System Biology, Pusan National University, Busan 46241, Korea
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Ramundi V, Zdouc MM, Donati E, van der Hooft JJJ, Cimini S, Righetti L. Non-targeted metabolomics-based molecular networking enables the chemical characterization of Rumex sanguineus, a wild edible plant. Metabolomics 2025; 21:19. [PMID: 39853612 PMCID: PMC11761831 DOI: 10.1007/s11306-024-02210-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/05/2024] [Accepted: 12/07/2024] [Indexed: 01/26/2025]
Abstract
INTRODUCTION AND OBJECTIVE Rumex sanguineus, a traditional medicinal plant of the Polygonaceae family, is gaining popularity as an edible resource. However, despite its historical and nutritional significance, its chemical composition remains poorly understood. To deepen the understanding of the of Rumex sanguineus composition, an in-depth analysis using non-targeted, mass spectrometry-based metabolomics was performed. METHODS: Rumex roots, stems and leaves samples were analyzed by UHPLC-HRMS and subsequently subjected to feature-based molecular networking. RESULTS AND CONCLUSION Overall, 347 primary and specialized metabolites grouped into 8 biochemical classes were annotated. Most of these metabolites (60%) belong to the polyphenols and anthraquinones classes. To investigate potential' toxicity due to the presence of anthraquinones, the amount of emodin was quantified with analytical standard, revealing higher accumulation in leaves compared to stems and roots. This highlights the need for thorough metabolomic studies to understand both beneficial and harmful compounds, especially in plants with historical medicinal use transitioning to modern culinary use.
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Affiliation(s)
- Valentina Ramundi
- Laboratory of Organic Chemistry, Wageningen University & Research, 6708 WE, Wageningen, the Netherlands
- Institute for Biological Systems (ISB), National Research Council of Italy (CNR), Via Salaria Km 29.300, Monterotondo Scalo, 00015, Rome, Italy
- Department of Science and Technology for Humans and the Environment, Università Campus Bio-Medico di Roma, Via Álvaro del Portillo, 21, 00128, Rome, Italy
- Helmholtz-Munich Metabolomics and Proteomics Core Facility (MPC) , Ingolstädter Landstraße 1, Buildings 25 and 34, 85764, Munich, Neuherberg, Germany
| | - Mitja M Zdouc
- Bioinformatics Group, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB, Wageningen, the Netherlands
| | - Enrica Donati
- Institute for Biological Systems (ISB), National Research Council of Italy (CNR), Via Salaria Km 29.300, Monterotondo Scalo, 00015, Rome, Italy
| | - Justin J J van der Hooft
- Bioinformatics Group, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB, Wageningen, the Netherlands
- Department of Biochemistry, University of Johannesburg, Johannesburg, 2006, South Africa
| | - Sara Cimini
- Department of Science and Technology for Humans and the Environment, Università Campus Bio-Medico di Roma, Via Álvaro del Portillo, 21, 00128, Rome, Italy
- National Biodiversity Future Center, NBFC, 90133, Palermo, Italy
| | - Laura Righetti
- Laboratory of Organic Chemistry, Wageningen University & Research, 6708 WE, Wageningen, the Netherlands.
- Wageningen Food Safety Research, Wageningen University & Research, 6700 AE, Wageningen, the Netherlands.
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Spaggiari C, Righetti L, Spadini C, Annunziato G, Nsanzurwimo A, Cabassi CS, Bruni R, Costantino G. Metabolite Profiling and Bioactivities of Leaves, Stems, and Flowers of Rumex usambarensis (Dammer) Dammer, a Traditional African Medicinal Plant. PLANTS (BASEL, SWITZERLAND) 2023; 12:482. [PMID: 36771567 PMCID: PMC9921730 DOI: 10.3390/plants12030482] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Revised: 01/12/2023] [Accepted: 01/17/2023] [Indexed: 06/18/2023]
Abstract
The comprehensive identification of secondary metabolites represents a fundamental step for the assessment of bioactivities and pharmacological properties of traditional herbal drugs. Rumex usambarensis (Dammer) Dammer has been described as a multipurpose remedy in different African traditional pharmacopoeias, but its phytochemical profile has not been properly investigated. Herein we report a high throughput metabolomic screening, based on ultra-high performance liquid chromatography-travelling wave ion mobility spectrometry quadrupole time-of-flight (UHPLC-TWINS-QTOF), which was performed for the first time on different R. usambarensis plant parts. By applying high-resolution mass spectrometry-based metabolomics and chemometric analysis, a complete discrimination of different aerial parts was obtained, with the annotation of 153 significant metabolites in leaves, stems, and flowers, suggesting an easy authentication and discrimination route. Phytochemical data were correlated to antimicrobial and antioxidant properties. Flavonoids, benzopyranes, chromones, and xanthones derivatives, along with a richer phytocomplex, might be responsible for the stronger bioactivities obtained from flowers.
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Affiliation(s)
- Chiara Spaggiari
- Department of Food and Drug, University of Parma, 43124 Parma, Italy
| | - Laura Righetti
- Department of Food and Drug, University of Parma, 43124 Parma, Italy
| | - Costanza Spadini
- Department of Veterinary Science, University of Parma, 43126 Parma, Italy
| | | | | | | | - Renato Bruni
- Department of Food and Drug, University of Parma, 43124 Parma, Italy
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Arnason JT, Harris CS, Guerrero-Analco JA. Phytochemistry in the Ethnopharmacology of North and Central America. Front Pharmacol 2022; 13:815742. [PMID: 35295322 PMCID: PMC8918843 DOI: 10.3389/fphar.2022.815742] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Accepted: 01/31/2022] [Indexed: 11/21/2022] Open
Abstract
Traditionally the role of phytochemistry in the ethnopharmacology of North and Central America has been to characterize plant materials so that they can be produced reproducibly for commercial use or to identify active principles in unstudied traditional medicines for drug discovery. With new decolonial objectives coming from Indigenous communities, emphasis has shifted to evaluating the safety and efficacy of traditional medicines and preparations for community use. With new techniques and technologies available, scientific focus has shifted from individual bioactives to more rapid and comprehensive chemical characterizations and polypharmacy of traditional medicines. Untargeted metabolomics and associated statistical treatments have greatly expanded identification of components, improved species and cultivar identification and provided means for identifying multiple activity biomarkers, via chemometric and biochemometric analysis. New integrated techniques are available for identifying multiple active principles and synergists. The recent explosion of information is not without problems that need to be addressed including many unconfirmed tentative identifications of phytochemicals, lack of quantitative testing, superficial chemical activity testing and continuing need for dereplication.
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Affiliation(s)
- John Thor Arnason
- Biology Department, University of Ottawa, Ottawa, ON, Canada
- *Correspondence: John Thor Arnason,
| | - Cory S. Harris
- Biology Department, University of Ottawa, Ottawa, ON, Canada
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