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For: Mulley JF, Chiu CH, Holland PWH. Breakup of a homeobox cluster after genome duplication in teleosts. Proc Natl Acad Sci U S A 2006;103:10369-10372. [PMID: 16801555 PMCID: PMC1502464 DOI: 10.1073/pnas.0600341103] [Citation(s) in RCA: 61] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
Number Cited by Other Article(s)
1
Kostyuchenko RP, Amosov AV. Spatial Colinear but Broken Temporal Expression of Duplicated ParaHox Genes in Asexually Reproducing Annelids, Nais communis and Pristina longiseta. Genes (Basel) 2023;14:1501. [PMID: 37510405 PMCID: PMC10379933 DOI: 10.3390/genes14071501] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Revised: 07/13/2023] [Accepted: 07/21/2023] [Indexed: 07/30/2023]  Open
2
Qu Z, Nong W, Yu Y, Baril T, Yip HY, Hayward A, Hui JHL. Genome of the four-finger threadfin Eleutheronema tetradactylum (Perciforms: Polynemidae). BMC Genomics 2020;21:726. [PMID: 33076831 PMCID: PMC7574432 DOI: 10.1186/s12864-020-07145-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2020] [Accepted: 10/12/2020] [Indexed: 12/02/2022]  Open
3
Jellyfish genomes reveal distinct homeobox gene clusters and conservation of small RNA processing. Nat Commun 2020;11:3051. [PMID: 32561724 PMCID: PMC7305137 DOI: 10.1038/s41467-020-16801-9] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2018] [Accepted: 05/22/2020] [Indexed: 12/30/2022]  Open
4
Zhong Y, Herrera-Úbeda C, Garcia-Fernàndez J, Li G, Holland PWH. Mutation of amphioxus Pdx and Cdx demonstrates conserved roles for ParaHox genes in gut, anus and tail patterning. BMC Biol 2020;18:68. [PMID: 32546156 PMCID: PMC7296684 DOI: 10.1186/s12915-020-00796-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2019] [Accepted: 05/19/2020] [Indexed: 12/19/2022]  Open
5
Wang B, Du X, Wang H, Jin C, Gao C, Liu J, Zhang Q. Comparative studies on duplicated tdrd7 paralogs in teleosts: Molecular evolution caused neo-functionalization. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS 2019;30:347-357. [PMID: 31059868 DOI: 10.1016/j.cbd.2019.04.006] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2018] [Revised: 03/03/2019] [Accepted: 04/24/2019] [Indexed: 11/27/2022]
6
Chang WH, Lai AG. A TALE of shrimps: Genome-wide survey of homeobox genes in 120 species from diverse crustacean taxa. F1000Res 2018;7:71. [PMID: 29899973 PMCID: PMC5968366 DOI: 10.12688/f1000research.13636.1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 01/10/2018] [Indexed: 01/19/2023]  Open
7
Lampreys, the jawless vertebrates, contain only two ParaHox gene clusters. Proc Natl Acad Sci U S A 2017;114:9146-9151. [PMID: 28784804 DOI: 10.1073/pnas.1704457114] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
8
Majtánová Z, Symonová R, Arias-Rodriguez L, Sallan L, Ráb P. "Holostei versus Halecostomi" Problem: Insight from Cytogenetics of Ancient Nonteleost Actinopterygian Fish, Bowfin Amia calva. JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION 2017;328:620-628. [PMID: 28074622 DOI: 10.1002/jez.b.22720] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2016] [Revised: 09/12/2016] [Accepted: 11/22/2016] [Indexed: 12/17/2022]
9
Du X, Liu Y, Liu J, Zhang Q, Wang X. Evolution history of duplicated smad3 genes in teleost: insights from Japanese flounder, Paralichthys olivaceus. PeerJ 2016;4:e2500. [PMID: 27703851 PMCID: PMC5045880 DOI: 10.7717/peerj.2500] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2016] [Accepted: 08/29/2016] [Indexed: 01/27/2023]  Open
10
Liu J, Jiang J, Wang Z, He Y, Zhang Q. Origin and evolution of GATA2a and GATA2b in teleosts: insights from tongue sole, Cynoglossus semilaevis. PeerJ 2016;4:e1790. [PMID: 27019782 PMCID: PMC4806627 DOI: 10.7717/peerj.1790] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2015] [Accepted: 02/20/2016] [Indexed: 12/31/2022]  Open
11
Garstang MG, Osborne PW, Ferrier DEK. TCF/Lef regulates the Gsx ParaHox gene in central nervous system development in chordates. BMC Evol Biol 2016;16:57. [PMID: 26940763 PMCID: PMC4776371 DOI: 10.1186/s12862-016-0614-3] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2015] [Accepted: 02/11/2016] [Indexed: 11/10/2022]  Open
12
Malhotra A, Creer S, Harris JB, Thorpe RS. The importance of being genomic: Non-coding and coding sequences suggest different models of toxin multi-gene family evolution. Toxicon 2015;107:344-58. [DOI: 10.1016/j.toxicon.2015.08.009] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2015] [Revised: 07/31/2015] [Accepted: 08/06/2015] [Indexed: 10/23/2022]
13
Wang Z, Liu W, Zhou N, Wang H, Li P, Wang M, Zhang Q. Molecular characterization, origin, and evolution of teleost p68 gene family: Insights from Japanese flounder, Paralichthys olivaceus. Mar Genomics 2015;24 Pt 3:363-70. [PMID: 26388449 DOI: 10.1016/j.margen.2015.09.003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2015] [Revised: 09/10/2015] [Accepted: 09/11/2015] [Indexed: 11/26/2022]
14
Marlétaz F, Maeso I, Faas L, Isaacs HV, Holland PWH. Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution. BMC Biol 2015;13:56. [PMID: 26231746 PMCID: PMC4522105 DOI: 10.1186/s12915-015-0165-x] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2015] [Accepted: 07/08/2015] [Indexed: 01/03/2023]  Open
15
Comparative Evolution of Duplicated Ddx3 Genes in Teleosts: Insights from Japanese Flounder, Paralichthys olivaceus. G3-GENES GENOMES GENETICS 2015;5:1765-73. [PMID: 26109358 PMCID: PMC4528332 DOI: 10.1534/g3.115.018911] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
16
Holland PWH. Did homeobox gene duplications contribute to the Cambrian explosion? ZOOLOGICAL LETTERS 2015;1:1. [PMID: 26605046 PMCID: PMC4604119 DOI: 10.1186/s40851-014-0004-x] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/25/2014] [Accepted: 05/03/2014] [Indexed: 06/05/2023]
17
The circadian clock of teleost fish: a comparative analysis reveals distinct fates for duplicated genes. J Mol Evol 2014;80:57-64. [PMID: 25487517 DOI: 10.1007/s00239-014-9660-x] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2014] [Accepted: 11/26/2014] [Indexed: 10/24/2022]
18
Mulley JF, Holland PW. Genomic organisation of the seven ParaHox genes of coelacanths. JOURNAL OF EXPERIMENTAL ZOOLOGY PART B: MOLECULAR AND DEVELOPMENTAL EVOLUTION 2014;322:352-8. [PMID: 23775937 PMCID: PMC4471637 DOI: 10.1002/jez.b.22513] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/27/2013] [Revised: 04/25/2013] [Accepted: 04/25/2013] [Indexed: 11/30/2022]
19
Annunziata R, Martinez P, Arnone MI. Intact cluster and chordate-like expression of ParaHox genes in a sea star. BMC Biol 2013;11:68. [PMID: 23803323 PMCID: PMC3710244 DOI: 10.1186/1741-7007-11-68] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2013] [Accepted: 04/29/2013] [Indexed: 11/19/2022]  Open
20
Ikuta T, Chen YC, Annunziata R, Ting HC, Tung CH, Koyanagi R, Tagawa K, Humphreys T, Fujiyama A, Saiga H, Satoh N, Yu JK, Arnone MI, Su YH. Identification of an intact ParaHox cluster with temporal colinearity but altered spatial colinearity in the hemichordate Ptychodera flava. BMC Evol Biol 2013;13:129. [PMID: 23802544 PMCID: PMC3698058 DOI: 10.1186/1471-2148-13-129] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2013] [Accepted: 06/19/2013] [Indexed: 12/17/2022]  Open
21
Nelson DR, Goldstone JV, Stegeman JJ. The cytochrome P450 genesis locus: the origin and evolution of animal cytochrome P450s. Philos Trans R Soc Lond B Biol Sci 2013;368:20120474. [PMID: 23297357 DOI: 10.1098/rstb.2012.0474] [Citation(s) in RCA: 135] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]  Open
22
Opazo JC, Butts GT, Nery MF, Storz JF, Hoffmann FG. Whole-genome duplication and the functional diversification of teleost fish hemoglobins. Mol Biol Evol 2012;30:140-53. [PMID: 22949522 PMCID: PMC3525417 DOI: 10.1093/molbev/mss212] [Citation(s) in RCA: 70] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]  Open
23
Hadrys H, Simon S, Kaune B, Schmitt O, Schöner A, Jakob W, Schierwater B. Isolation of Hox cluster genes from insects reveals an accelerated sequence evolution rate. PLoS One 2012;7:e34682. [PMID: 22685537 PMCID: PMC3369913 DOI: 10.1371/journal.pone.0034682] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2012] [Accepted: 03/08/2012] [Indexed: 01/10/2023]  Open
24
Raincrow JD, Dewar K, Stocsits C, Prohaska SJ, Amemiya CT, Stadler PF, Chiu CH. Hox clusters of the bichir (Actinopterygii, Polypterus senegalus) highlight unique patterns of sequence evolution in gnathostome phylogeny. JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION 2011;316:451-64. [PMID: 21688387 DOI: 10.1002/jez.b.21420] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2011] [Revised: 03/27/2011] [Accepted: 04/24/2011] [Indexed: 12/12/2022]
25
Castro LFC, Wilson JM, Gonçalves O, Galante-Oliveira S, Rocha E, Cunha I. The evolutionary history of the stearoyl-CoA desaturase gene family in vertebrates. BMC Evol Biol 2011;11:132. [PMID: 21595943 PMCID: PMC3112091 DOI: 10.1186/1471-2148-11-132] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2010] [Accepted: 05/19/2011] [Indexed: 12/12/2022]  Open
26
López MD, Samuelsson T. eGOB: eukaryotic Gene Order Browser. ACTA ACUST UNITED AC 2011;27:1150-1. [PMID: 21317139 DOI: 10.1093/bioinformatics/btr075] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
27
Bürglin TR. Homeodomain subtypes and functional diversity. Subcell Biochem 2011;52:95-122. [PMID: 21557080 DOI: 10.1007/978-90-481-9069-0_5] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
28
Ishioka A, Jindo T, Kawanabe T, Hatta K, Parvin MS, Nikaido M, Kuroyanagi Y, Takeda H, Yamasu K. Retinoic acid-dependent establishment of positional information in the hindbrain was conserved during vertebrate evolution. Dev Biol 2010;350:154-68. [PMID: 20969843 DOI: 10.1016/j.ydbio.2010.10.011] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2010] [Revised: 10/08/2010] [Accepted: 10/09/2010] [Indexed: 11/18/2022]
29
Samadi L, Steiner G. Conservation of ParaHox genes' function in patterning of the digestive tract of the marine gastropod Gibbula varia. BMC DEVELOPMENTAL BIOLOGY 2010;10:74. [PMID: 20624311 PMCID: PMC2913954 DOI: 10.1186/1471-213x-10-74] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/17/2010] [Accepted: 07/12/2010] [Indexed: 11/10/2022]
30
Oulion S, Debiais-Thibaud M, d'Aubenton-Carafa Y, Thermes C, Da Silva C, Bernard-Samain S, Gavory F, Wincker P, Mazan S, Casane D. Evolution of Hox gene clusters in gnathostomes: insights from a survey of a shark (Scyliorhinus canicula) transcriptome. Mol Biol Evol 2010;27:2829-38. [PMID: 20616144 DOI: 10.1093/molbev/msq172] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]  Open
31
Mulley JF, Holland PWH. Parallel retention of Pdx2 genes in cartilaginous fish and coelacanths. Mol Biol Evol 2010;27:2386-91. [PMID: 20463047 PMCID: PMC2944030 DOI: 10.1093/molbev/msq121] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]  Open
32
Wotton KR, Weierud FK, Juárez-Morales JL, Alvares LE, Dietrich S, Lewis KE. Conservation of gene linkage in dispersed vertebrate NK homeobox clusters. Dev Genes Evol 2010;219:481-96. [PMID: 20112453 DOI: 10.1007/s00427-009-0311-y] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
33
Laisney JAGC, Braasch I, Walter RB, Meierjohann S, Schartl M. Lineage-specific co-evolution of the Egf receptor/ligand signaling system. BMC Evol Biol 2010;10:27. [PMID: 20105326 PMCID: PMC2834686 DOI: 10.1186/1471-2148-10-27] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2009] [Accepted: 01/27/2010] [Indexed: 01/10/2023]  Open
34
Hui JHL, Raible F, Korchagina N, Dray N, Samain S, Magdelenat G, Jubin C, Segurens B, Balavoine G, Arendt D, Ferrier DEK. Features of the ancestral bilaterian inferred from Platynereis dumerilii ParaHox genes. BMC Biol 2009;7:43. [PMID: 19627570 PMCID: PMC2723086 DOI: 10.1186/1741-7007-7-43] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2009] [Accepted: 07/23/2009] [Indexed: 11/10/2022]  Open
35
Faas L, Isaacs HV. Overlapping functions of Cdx1, Cdx2, and Cdx4 in the development of the amphibian Xenopus tropicalis. Dev Dyn 2009;238:835-52. [PMID: 19301404 PMCID: PMC2701559 DOI: 10.1002/dvdy.21901] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]  Open
36
Furlong RF, Mulley JF. ParaHox cluster evolution--hagfish and beyond. Zoolog Sci 2009;25:955-9. [PMID: 19267630 DOI: 10.2108/zsj.25.955] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
37
Osborne PW, Benoit G, Laudet V, Schubert M, Ferrier DE. Differential regulation of ParaHox genes by retinoic acid in the invertebrate chordate amphioxus (Branchiostoma floridae). Dev Biol 2009;327:252-62. [DOI: 10.1016/j.ydbio.2008.11.027] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2008] [Revised: 11/19/2008] [Accepted: 11/19/2008] [Indexed: 02/04/2023]
38
Chambers KE, McDaniell R, Raincrow JD, Deshmukh M, Stadler PF, Chiu CH. Hox cluster duplication in the basal teleost Hiodon alosoides (Osteoglossomorpha). Theory Biosci 2009;128:109-20. [PMID: 19225820 PMCID: PMC2683926 DOI: 10.1007/s12064-009-0056-1] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2008] [Accepted: 01/12/2009] [Indexed: 11/30/2022]
39
Hui JHL, Holland PWH, Ferrier DEK. Do cnidarians have a ParaHox cluster? Analysis of synteny around a Nematostella homeobox gene cluster. Evol Dev 2009;10:725-30. [PMID: 19021743 DOI: 10.1111/j.1525-142x.2008.00286.x] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
40
Illes JC, Winterbottom E, Isaacs HV. Cloning and expression analysis of the anterior parahox genes,Gsh1andGsh2fromXenopus tropicalis. Dev Dyn 2009;238:194-203. [DOI: 10.1002/dvdy.21816] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]  Open
41
Flores MVC, Hall CJ, Davidson AJ, Singh PP, Mahagaonkar AA, Zon LI, Crosier KE, Crosier PS. Intestinal differentiation in zebrafish requires Cdx1b, a functional equivalent of mammalian Cdx2. Gastroenterology 2008;135:1665-75. [PMID: 18804112 DOI: 10.1053/j.gastro.2008.07.024] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/27/2007] [Revised: 07/09/2008] [Accepted: 07/17/2008] [Indexed: 12/12/2022]
42
Lehmann J, Stadler PF, Prohaska SJ. SynBlast: assisting the analysis of conserved synteny information. BMC Bioinformatics 2008;9:351. [PMID: 18721485 PMCID: PMC2543028 DOI: 10.1186/1471-2105-9-351] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2008] [Accepted: 08/24/2008] [Indexed: 01/06/2023]  Open
43
Shimeld SM. Peter Holland, homeobox genes, and the developmental basis of animal diversity. Russ J Dev Biol 2008. [DOI: 10.1134/s1062360408030089] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
44
Wotton KR, Weierud FK, Dietrich S, Lewis KE. Comparative genomics of Lbx loci reveals conservation of identical Lbx ohnologs in bony vertebrates. BMC Evol Biol 2008;8:171. [PMID: 18541024 PMCID: PMC2446394 DOI: 10.1186/1471-2148-8-171] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2008] [Accepted: 06/09/2008] [Indexed: 01/07/2023]  Open
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Bussmann J, Lawson N, Zon L, Schulte-Merker S. Zebrafish VEGF receptors: a guideline to nomenclature. PLoS Genet 2008;4:e1000064. [PMID: 18516225 PMCID: PMC2367445 DOI: 10.1371/journal.pgen.1000064] [Citation(s) in RCA: 60] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]  Open
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Kulakova MA, Cook CE, Andreeva TF. ParaHox gene expression in larval and postlarval development of the polychaete Nereis virens (Annelida, Lophotrochozoa). BMC DEVELOPMENTAL BIOLOGY 2008;8:61. [PMID: 18510732 PMCID: PMC2440741 DOI: 10.1186/1471-213x-8-61] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/10/2007] [Accepted: 05/29/2008] [Indexed: 11/21/2022]
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Hox genes and the parasitic flatworms: New opportunities, challenges and lessons from the free-living. Parasitol Int 2008;57:8-17. [DOI: 10.1016/j.parint.2007.09.007] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2007] [Revised: 09/18/2007] [Accepted: 09/24/2007] [Indexed: 11/20/2022]
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Rosanas-Urgell A, Garcia-Fernàndez J, Marfany G. ParaHox genes in pancreatic cell cultures: effects on the insulin promoter regulation. Int J Biol Sci 2008;4:48-57. [PMID: 18274620 PMCID: PMC2238182 DOI: 10.7150/ijbs.4.48] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2008] [Accepted: 02/04/2008] [Indexed: 11/29/2022]  Open
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Kinkel MD, Eames SC, Alonzo MR, Prince VE. Cdx4 is required in the endoderm to localize the pancreas and limit beta-cell number. Development 2008;135:919-29. [PMID: 18234725 DOI: 10.1242/dev.010660] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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Kikuta H, Fredman D, Rinkwitz S, Lenhard B, Becker TS. Retroviral enhancer detection insertions in zebrafish combined with comparative genomics reveal genomic regulatory blocks - a fundamental feature of vertebrate genomes. Genome Biol 2007;8 Suppl 1:S4. [PMID: 18047696 PMCID: PMC2106839 DOI: 10.1186/gb-2007-8-s1-s4] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]  Open
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