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For: Pankey MS, Minin VN, Imholte GC, Suchard MA, Oakley TH. Predictable transcriptome evolution in the convergent and complex bioluminescent organs of squid. Proc Natl Acad Sci U S A 2014;111:E4736-42. [PMID: 25336755 DOI: 10.1073/pnas.1416574111] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]  Open
Number Cited by Other Article(s)
1
Mastrantonio V, Libro P, Di Martino J, Matera M, Bellini R, Castrignanò T, Urbanelli S, Porretta D. Integrated de novo transcriptome of Culex pipiens mosquito larvae as a resource for genetic control strategies. Sci Data 2024;11:471. [PMID: 38724521 PMCID: PMC11082219 DOI: 10.1038/s41597-024-03285-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2023] [Accepted: 04/19/2024] [Indexed: 05/12/2024]  Open
2
Vijayan N, McAnulty SJ, Sanchez G, Jolly J, Ikeda Y, Nishiguchi MK, Réveillac E, Gestal C, Spady BL, Li DH, Burford BP, Kerwin AH, Nyholm SV. Evolutionary history influences the microbiomes of a female symbiotic reproductive organ in cephalopods. Appl Environ Microbiol 2024;90:e0099023. [PMID: 38315021 PMCID: PMC10952459 DOI: 10.1128/aem.00990-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2023] [Accepted: 12/09/2023] [Indexed: 02/07/2024]  Open
3
Lau ES, Goodheart JA, Anderson NT, Liu VL, Mukherjee A, Oakley TH. Similar enzymatic functions in distinct bioluminescence systems: Evolutionary recruitment of sulfotransferases in ostracod light organs. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2023.04.12.536614. [PMID: 37090632 PMCID: PMC10120648 DOI: 10.1101/2023.04.12.536614] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/25/2023]
4
Niu YH, Guan LH, Wang C, Jiang HF, Li GG, Yang LD, He SP. Comparative transcriptomic evidence of physiological changes and potential relationships in vertebrates under different dormancy states. Zool Res 2024;45:341-354. [PMID: 38485504 PMCID: PMC11017076 DOI: 10.24272/j.issn.2095-8137.2023.308] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Accepted: 12/05/2023] [Indexed: 03/19/2024]  Open
5
Baden T, Briseño J, Coffing G, Cohen-Bodénès S, Courtney A, Dickerson D, Dölen G, Fiorito G, Gestal C, Gustafson T, Heath-Heckman E, Hua Q, Imperadore P, Kimbara R, Król M, Lajbner Z, Lichilín N, Macchi F, McCoy MJ, Nishiguchi MK, Nyholm SV, Otjacques E, Pérez-Ferrer PA, Ponte G, Pungor JR, Rogers TF, Rosenthal JJC, Rouressol L, Rubas N, Sanchez G, Santos CP, Schultz DT, Seuntjens E, Songco-Casey JO, Stewart IE, Styfhals R, Tuanapaya S, Vijayan N, Weissenbacher A, Zifcakova L, Schulz G, Weertman W, Simakov O, Albertin CB. Cephalopod-omics: Emerging Fields and Technologies in Cephalopod Biology. Integr Comp Biol 2023;63:1226-1239. [PMID: 37370232 PMCID: PMC10755191 DOI: 10.1093/icb/icad087] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2022] [Revised: 06/09/2023] [Accepted: 06/13/2023] [Indexed: 06/29/2023]  Open
6
Safian D, Ahmed M, van Kruistum H, Furness AI, Reznick DN, Wiegertjes GF, Pollux BJ. Repeated independent origins of the placenta reveal convergent and divergent organ evolution within a single fish family (Poeciliidae). SCIENCE ADVANCES 2023;9:eadf3915. [PMID: 37611099 PMCID: PMC10446500 DOI: 10.1126/sciadv.adf3915] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2022] [Accepted: 07/24/2023] [Indexed: 08/25/2023]
7
Li M, Wu B, Zhang P, Li Y, Xu W, Wang K, Qiu Q, Zhang J, Li J, Zhang C, Fan J, Feng C, Chen Z. Genomes of Two Flying Squid Species Provide Novel Sights into Adaptations of Cephalopods to Pelagic Life. GENOMICS, PROTEOMICS & BIOINFORMATICS 2022;20:1053-1065. [PMID: 36216027 DOI: 10.1016/j.gpb.2022.09.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2021] [Revised: 08/25/2022] [Accepted: 09/28/2022] [Indexed: 11/07/2022]
8
Fronk DC, Sachs JL. Symbiotic organs: the nexus of host-microbe evolution. Trends Ecol Evol 2022;37:599-610. [PMID: 35393155 DOI: 10.1016/j.tree.2022.02.014] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2021] [Revised: 02/14/2022] [Accepted: 02/28/2022] [Indexed: 02/07/2023]
9
Foster CS, Van Dyke JU, Thompson MB, Smith NM, Simpfendorfer CA, Murphy CR, Whittington CM. Different Genes are Recruited During Convergent Evolution of Pregnancy and the Placenta. Mol Biol Evol 2022;39:msac077. [PMID: 35388432 PMCID: PMC9048886 DOI: 10.1093/molbev/msac077] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
10
Hilgers L, Roth O, Nolte AW, Schüller A, Spanke T, Flury JM, Utama IV, Altmüller J, Wowor D, Misof B, Herder F, Böhne A, Schwarzer J. Inflammation and convergent placenta gene co-option contributed to a novel reproductive tissue. Curr Biol 2021;32:715-724.e4. [PMID: 34932936 PMCID: PMC8837275 DOI: 10.1016/j.cub.2021.12.004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Revised: 08/27/2021] [Accepted: 12/01/2021] [Indexed: 12/13/2022]
11
Heath-Heckman E, Nishiguchi M. Leveraging Short-Read Sequencing to Explore the Genomics of Sepiolid Squid. Integr Comp Biol 2021;61:1753-1761. [PMID: 34191015 DOI: 10.1093/icb/icab152] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
12
Sanchez G, Fernández-Álvarez FÁ, Taite M, Sugimoto C, Jolly J, Simakov O, Marlétaz F, Allcock L, Rokhsar DS. Phylogenomics illuminates the evolution of bobtail and bottletail squid (order Sepiolida). Commun Biol 2021;4:819. [PMID: 34188187 PMCID: PMC8241861 DOI: 10.1038/s42003-021-02348-y] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2020] [Accepted: 05/13/2021] [Indexed: 11/09/2022]  Open
13
Deravi LF. Compositional similarities that link the eyes and skin of cephalopods: Implications in optical sensing and signaling during camouflage. Integr Comp Biol 2021;61:1511-1516. [PMID: 34160621 DOI: 10.1093/icb/icab143] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
14
Fischer EK, Song Y, Hughes KA, Zhou W, Hoke KL. Nonparallel transcriptional divergence during parallel adaptation. Mol Ecol 2021;30:1516-1530. [PMID: 33522041 DOI: 10.1111/mec.15823] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2020] [Revised: 01/25/2021] [Accepted: 01/26/2021] [Indexed: 12/17/2022]
15
Ansaloni F, Gerdol M, Torboli V, Fornaini NR, Greco S, Giulianini PG, Coscia MR, Miccoli A, Santovito G, Buonocore F, Scapigliati G, Pallavicini A. Cold Adaptation in Antarctic Notothenioids: Comparative Transcriptomics Reveals Novel Insights in the Peculiar Role of Gills and Highlights Signatures of Cobalamin Deficiency. Int J Mol Sci 2021;22:ijms22041812. [PMID: 33670421 PMCID: PMC7918649 DOI: 10.3390/ijms22041812] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2021] [Revised: 02/04/2021] [Accepted: 02/08/2021] [Indexed: 01/13/2023]  Open
16
Lau ES, Oakley TH. Multi-level convergence of complex traits and the evolution of bioluminescence. Biol Rev Camb Philos Soc 2020;96:673-691. [PMID: 33306257 DOI: 10.1111/brv.12672] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2020] [Revised: 11/16/2020] [Accepted: 11/18/2020] [Indexed: 12/14/2022]
17
Plachetzki DC, Pankey MS, MacManes MD, Lesser MP, Walker CW. The Genome of the Softshell Clam Mya arenaria and the Evolution of Apoptosis. Genome Biol Evol 2020;12:1681-1693. [PMID: 32653903 PMCID: PMC7531772 DOI: 10.1093/gbe/evaa143] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/06/2020] [Indexed: 02/07/2023]  Open
18
Douglas AE. Housing microbial symbionts: evolutionary origins and diversification of symbiotic organs in animals. Philos Trans R Soc Lond B Biol Sci 2020;375:20190603. [PMID: 32772661 DOI: 10.1098/rstb.2019.0603] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]  Open
19
Aardema ML, Stiassny MLJ, Alter SE. Genomic Analysis of the Only Blind Cichlid Reveals Extensive Inactivation in Eye and Pigment Formation Genes. Genome Biol Evol 2020;12:1392-1406. [PMID: 32653909 PMCID: PMC7502198 DOI: 10.1093/gbe/evaa144] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/06/2020] [Indexed: 12/21/2022]  Open
20
Merényi Z, Prasanna AN, Wang Z, Kovács K, Hegedüs B, Bálint B, Papp B, Townsend JP, Nagy LG. Unmatched Level of Molecular Convergence among Deeply Divergent Complex Multicellular Fungi. Mol Biol Evol 2020;37:2228-2240. [PMID: 32191325 PMCID: PMC7403615 DOI: 10.1093/molbev/msaa077] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]  Open
21
Wang Y, Zhao Y, Wang Y, Li Z, Guo B, Merilä J. Population transcriptomics reveals weak parallel genetic basis in repeated marine and freshwater divergence in nine‐spined sticklebacks. Mol Ecol 2020;29:1642-1656. [DOI: 10.1111/mec.15435] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2020] [Revised: 03/21/2020] [Accepted: 03/30/2020] [Indexed: 12/20/2022]
22
Freedman AH, Clamp M, Sackton TB. Error, noise and bias in de novo transcriptome assemblies. Mol Ecol Resour 2020;21:18-29. [PMID: 32180366 DOI: 10.1111/1755-0998.13156] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2019] [Revised: 01/25/2020] [Accepted: 03/10/2020] [Indexed: 12/21/2022]
23
Whidden C, Claywell BC, Fisher T, Magee AF, Fourment M, Matsen FA. Systematic Exploration of the High Likelihood Set of Phylogenetic Tree Topologies. Syst Biol 2020;69:280-293. [PMID: 31504997 DOI: 10.1093/sysbio/syz047] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2018] [Revised: 05/29/2019] [Accepted: 04/09/2019] [Indexed: 11/12/2022]  Open
24
Albertin CB, Simakov O. Cephalopod Biology: At the Intersection Between Genomic and Organismal Novelties. Annu Rev Anim Biosci 2020;8:71-90. [PMID: 31815522 DOI: 10.1146/annurev-animal-021419-083609] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
25
Liu A, He F, Zhou J, Zou Y, Su Z, Gu X. Comparative Transcriptome Analyses Reveal the Role of Conserved Function in Electric Organ Convergence Across Electric Fishes. Front Genet 2019;10:664. [PMID: 31379927 PMCID: PMC6657706 DOI: 10.3389/fgene.2019.00664] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2019] [Accepted: 06/25/2019] [Indexed: 11/24/2022]  Open
26
Stern DB, Crandall KA. The Evolution of Gene Expression Underlying Vision Loss in Cave Animals. Mol Biol Evol 2019;35:2005-2014. [PMID: 29788330 PMCID: PMC6063295 DOI: 10.1093/molbev/msy106] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]  Open
27
Brown AP, McGowan KL, Schwarzkopf EJ, Greenway R, Rodriguez LA, Tobler M, Kelley JL. Local ancestry analysis reveals genomic convergence in extremophile fishes. Philos Trans R Soc Lond B Biol Sci 2019;374:20180240. [PMID: 31154969 DOI: 10.1098/rstb.2018.0240] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
28
Bäckhed F. Shining light on microbial signaling to distant organs. Proc Natl Acad Sci U S A 2019;116:7617-7619. [PMID: 30926665 PMCID: PMC6475377 DOI: 10.1073/pnas.1902664116] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]  Open
29
Stern DB, Crandall KA. Phototransduction Gene Expression and Evolution in Cave and Surface Crayfishes. Integr Comp Biol 2019;58:398-410. [PMID: 29762661 DOI: 10.1093/icb/icy029] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]  Open
30
Williams TL, Senft SL, Yeo J, Martín-Martínez FJ, Kuzirian AM, Martin CA, DiBona CW, Chen CT, Dinneen SR, Nguyen HT, Gomes CM, Rosenthal JJC, MacManes MD, Chu F, Buehler MJ, Hanlon RT, Deravi LF. Dynamic pigmentary and structural coloration within cephalopod chromatophore organs. Nat Commun 2019;10:1004. [PMID: 30824708 PMCID: PMC6397165 DOI: 10.1038/s41467-019-08891-x] [Citation(s) in RCA: 74] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2018] [Accepted: 01/23/2019] [Indexed: 01/08/2023]  Open
31
Symbiotic organs shaped by distinct modes of genome evolution in cephalopods. Proc Natl Acad Sci U S A 2019;116:3030-3035. [PMID: 30635418 PMCID: PMC6386654 DOI: 10.1073/pnas.1817322116] [Citation(s) in RCA: 99] [Impact Index Per Article: 16.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]  Open
32
Fallon TR, Lower SE, Chang CH, Bessho-Uehara M, Martin GJ, Bewick AJ, Behringer M, Debat HJ, Wong I, Day JC, Suvorov A, Silva CJ, Stanger-Hall KF, Hall DW, Schmitz RJ, Nelson DR, Lewis SM, Shigenobu S, Bybee SM, Larracuente AM, Oba Y, Weng JK. Firefly genomes illuminate parallel origins of bioluminescence in beetles. eLife 2018;7:e36495. [PMID: 30324905 PMCID: PMC6191289 DOI: 10.7554/elife.36495] [Citation(s) in RCA: 99] [Impact Index Per Article: 14.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2018] [Accepted: 08/23/2018] [Indexed: 12/31/2022]  Open
33
Liang C, Musser JM, Cloutier A, Prum RO, Wagner GP. Pervasive Correlated Evolution in Gene Expression Shapes Cell and Tissue Type Transcriptomes. Genome Biol Evol 2018;10:538-552. [PMID: 29373668 PMCID: PMC5800078 DOI: 10.1093/gbe/evy016] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/21/2018] [Indexed: 12/11/2022]  Open
34
Cordero GA, Liu H, Wimalanathan K, Weber R, Quinteros K, Janzen FJ. Gene network variation and alternative paths to convergent evolution in turtles. Evol Dev 2018;20:172-185. [DOI: 10.1111/ede.12264] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
35
Picciani N, Kerlin JR, Sierra N, Swafford AJM, Ramirez MD, Roberts NG, Cannon JT, Daly M, Oakley TH. Prolific Origination of Eyes in Cnidaria with Co-option of Non-visual Opsins. Curr Biol 2018;28:2413-2419.e4. [PMID: 30033336 DOI: 10.1016/j.cub.2018.05.055] [Citation(s) in RCA: 42] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2018] [Revised: 03/26/2018] [Accepted: 05/17/2018] [Indexed: 11/15/2022]
36
Ongoing Transposon-Mediated Genome Reduction in the Luminous Bacterial Symbionts of Deep-Sea Ceratioid Anglerfishes. mBio 2018;9:mBio.01033-18. [PMID: 29946051 PMCID: PMC6020299 DOI: 10.1128/mbio.01033-18] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
37
Kayal E, Bentlage B, Sabrina Pankey M, Ohdera AH, Medina M, Plachetzki DC, Collins AG, Ryan JF. Phylogenomics provides a robust topology of the major cnidarian lineages and insights on the origins of key organismal traits. BMC Evol Biol 2018. [PMCID: PMC5932825 DOI: 10.1186/s12862-018-1142-0] [Citation(s) in RCA: 131] [Impact Index Per Article: 18.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]  Open
38
Thomas GWC, Hahn MW, Hahn Y. The Effects of Increasing the Number of Taxa on Inferences of Molecular Convergence. Genome Biol Evol 2017;9:213-221. [PMID: 28057728 PMCID: PMC5381636 DOI: 10.1093/gbe/evw306] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/01/2017] [Indexed: 12/27/2022]  Open
39
Wolff GH, Thoen HH, Marshall J, Sayre ME, Strausfeld NJ. An insect-like mushroom body in a crustacean brain. eLife 2017;6:29889. [PMID: 28949916 PMCID: PMC5614564 DOI: 10.7554/elife.29889] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2017] [Accepted: 08/25/2017] [Indexed: 01/02/2023]  Open
40
Francis WR, Christianson LM, Haddock SHD. Symplectin evolved from multiple duplications in bioluminescent squid. PeerJ 2017;5:e3633. [PMID: 28785521 PMCID: PMC5541922 DOI: 10.7717/peerj.3633] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2017] [Accepted: 07/11/2017] [Indexed: 01/06/2023]  Open
41
Pantalacci S, Guéguen L, Petit C, Lambert A, Peterkovà R, Sémon M. Transcriptomic signatures shaped by cell proportions shed light on comparative developmental biology. Genome Biol 2017;18:29. [PMID: 28202034 PMCID: PMC5312534 DOI: 10.1186/s13059-017-1157-7] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2016] [Accepted: 01/19/2017] [Indexed: 11/10/2022]  Open
42
TreeExp1.0: R Package for Analyzing Expression Evolution Based on RNA-Seq Data. JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION 2016;326:394-402. [DOI: 10.1002/jez.b.22707] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2016] [Accepted: 09/24/2016] [Indexed: 01/14/2023]
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Gehrke AR, Srivastava M. Neoblasts and the evolution of whole-body regeneration. Curr Opin Genet Dev 2016;40:131-137. [PMID: 27498025 DOI: 10.1016/j.gde.2016.07.009] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2016] [Revised: 07/02/2016] [Accepted: 07/13/2016] [Indexed: 11/26/2022]
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Ollé-Vila A, Duran-Nebreda S, Conde-Pueyo N, Montañez R, Solé R. A morphospace for synthetic organs and organoids: the possible and the actual. Integr Biol (Camb) 2016;8:485-503. [PMID: 27032985 DOI: 10.1039/c5ib00324e] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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Biscotti MA, Gerdol M, Canapa A, Forconi M, Olmo E, Pallavicini A, Barucca M, Schartl M. The Lungfish Transcriptome: A Glimpse into Molecular Evolution Events at the Transition from Water to Land. Sci Rep 2016;6:21571. [PMID: 26908371 PMCID: PMC4764851 DOI: 10.1038/srep21571] [Citation(s) in RCA: 63] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2015] [Accepted: 01/20/2016] [Indexed: 01/12/2023]  Open
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Bittleston LS, Pierce NE, Ellison AM, Pringle A. Convergence in Multispecies Interactions. Trends Ecol Evol 2016;31:269-280. [PMID: 26858111 DOI: 10.1016/j.tree.2016.01.006] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2015] [Revised: 01/05/2016] [Accepted: 01/12/2016] [Indexed: 12/29/2022]
47
Vöcking O, Kourtesis I, Hausen H. Posterior eyespots in larval chitons have a molecular identity similar to anterior cerebral eyes in other bilaterians. EvoDevo 2015;6:40. [PMID: 26702352 PMCID: PMC4689004 DOI: 10.1186/s13227-015-0036-0] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2015] [Accepted: 11/19/2015] [Indexed: 11/17/2022]  Open
48
Parallel molecular routes to cold adaptation in eight genera of New Zealand stick insects. Sci Rep 2015;5:13965. [PMID: 26355841 PMCID: PMC4564816 DOI: 10.1038/srep13965] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2015] [Accepted: 08/12/2015] [Indexed: 12/20/2022]  Open
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Sanders SM, Cartwright P. Interspecific Differential Expression Analysis of RNA-Seq Data Yields Insight into Life Cycle Variation in Hydractiniid Hydrozoans. Genome Biol Evol 2015;7:2417-31. [PMID: 26251524 PMCID: PMC4558869 DOI: 10.1093/gbe/evv153] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/02/2015] [Indexed: 12/25/2022]  Open
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Musser JM, Wagner GP. Character trees from transcriptome data: Origin and individuation of morphological characters and the so-called "species signal". JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION 2015;324:588-604. [PMID: 26175303 DOI: 10.1002/jez.b.22636] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/31/2014] [Accepted: 05/29/2015] [Indexed: 01/01/2023]
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