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Johne AS, Carter CG, Wotherspoon S, Hadley S, Symonds JE, Walker SP, Blanchard JL. Modeling the effects of ration on individual growth of Oncorhynchus tshawytscha under controlled conditions. JOURNAL OF FISH BIOLOGY 2023; 103:1003-1014. [PMID: 37410553 DOI: 10.1111/jfb.15499] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Revised: 06/02/2023] [Accepted: 07/05/2023] [Indexed: 07/08/2023]
Abstract
Fed aquaculture is one of the fastest-growing and most valuable food production industries in the world. The efficiency with which farmed fish convert feed into biomass influences both environmental impact and economic revenue. Salmonid species, such as king salmon (Oncorhynchus tshawytscha), exhibit high levels of plasticity in vital rates such as feed intake and growth rates. Accurate estimations of individual variability in vital rates are important for production management. The use of mean trait values to evaluate feeding and growth performance can mask individual-level differences that potentially contribute to inefficiencies. Here, the authors apply a cohort integral projection model (IPM) framework to investigate individual variation in growth performance of 1625 individually tagged king salmon fed one of three distinct rations of 60%, 80%, and 100% satiation and tracked over a duration of 276 days. To capture the observed sigmoidal growth of individuals, they compared a nonlinear mixed-effects (logistic) model to a linear model used within the IPM framework. Ration significantly influenced several aspects of growth, both at the individual and at the cohort level. Mean final body mass and mean growth rate increased with ration; however, variance in body mass and feed intake also increased significantly over time. Trends in mean body mass and individual body mass variation were captured by both logistic and linear models, suggesting the linear model to be suitable for use in the IPM. The authors also observed that higher rations resulted in a decreasing proportion of individuals reaching the cohort's mean body mass or larger by the end of the experiment. This suggests that, in the present experiment, feeding to satiation did not produce the desired effects of efficient, fast, and uniform growth in juvenile king salmon. Although monitoring individuals through time is challenging in commercial aquaculture settings, recent technological advances combined with an IPM approach could provide new scope for tracking growth performance in experimental and farmed populations. Using the IPM framework might allow the exploration of other size-dependent processes affecting vital rate functions, such as competition and mortality.
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Affiliation(s)
- Alexandra S Johne
- Ecology & Biodiversity, Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, Australia
| | - Chris G Carter
- Fisheries & Aquaculture, Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, Australia
| | | | - Scott Hadley
- Fisheries & Aquaculture, Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, Australia
| | - Jane E Symonds
- Ecology & Biodiversity, Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, Australia
- Cawthron Institute, Nelson, New Zealand
| | | | - Julia L Blanchard
- Ecology & Biodiversity, Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, Australia
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2
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Travis J, Bassar RD, Coulson T, Lopez-Sepulcre A, Reznick D. Population Regulation and Density-Dependent Demography in the Trinidadian Guppy. Am Nat 2023; 202:413-432. [PMID: 37792920 DOI: 10.1086/725796] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/06/2023]
Abstract
AbstractClassic theory for density-dependent selection for delayed maturation requires that a population be regulated through some combination of adult fecundity and/or juvenile survival. We tested whether those demographic conditions were met in four experimental populations of Trinidadian guppies in which delayed maturation of males evolved when the densities of those populations became high. We used monthly mark-recapture data to examine population dynamics and demography in these populations. Three of the four populations displayed clear evidence of regulation. In all four populations, monthly adult survival rates were independent of biomass density or actually increased with increased biomass density. Juvenile recruitment, which is a combination of adult fecundity and juvenile survival, decreased as biomass density increased in all four populations. Demography showed marked seasonality, with greater survival and higher recruitment in the dry season than the wet season. Population regulation via juvenile recruitment supports the hypothesis that density-dependent selection was responsible for the evolution of delayed maturity in males. This body of work represents one of the few complete tests of density-dependent selection theory.
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3
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Senthilnathan A. Smaller is better in competition for space. Proc Biol Sci 2023; 290:20230627. [PMID: 37339738 PMCID: PMC10281802 DOI: 10.1098/rspb.2023.0627] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2023] [Accepted: 05/19/2023] [Indexed: 06/22/2023] Open
Abstract
Body size is a prominent morphological trait which affects many aspects of an organism's life. Although large body size is generally considered to be advantageous, ecologists have wondered about the benefits of being small. Many studies of body size depend on the metabolic theory of ecology since body size is an irremovable part of an organism's energy budget. Body size is also a spatial quantity and therefore is linked to spatial processes. Here, I show that competition for space leads to a benefit of being small and hence selects for increasingly smaller body size. I build a deterministic population dynamics model and a stochastic model of birth, death and dispersal in a population of individuals with two different body sizes and show that only the smaller individuals survive. I also extend the population dynamics model to continuously varying body sizes and include a stabilizing natural selection for an intermediate body size. I find that the intrinsic advantage of smaller body size in competition for space can only be overcome when natural selection for a large body size is sufficiently strong. Overall, my results point to a novel benefit of being small.
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4
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Potter T, Arendt J, Bassar RD, Watson B, Bentzen P, Travis J, Reznick DN. Female preference for rare males is maintained by indirect selection in Trinidadian guppies. Science 2023; 380:309-312. [PMID: 37079663 DOI: 10.1126/science.ade5671] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/22/2023]
Abstract
When females prefer mates with rare phenotypes, sexual selection can maintain rather than deplete genetic variation. However, there is no consensus on why this widespread and frequently observed preference might evolve and persist. We examine the fitness consequences of female preference for rare male color patterns in a natural population of Trinidadian guppies, using a pedigree that spans 10 generations. We demonstrate (i) a rare male reproductive advantage, (ii) that females that mate with rare males gain an indirect fitness advantage through the mating success of their sons, and (iii) the fitness benefit that females accrue through their "sexy sons" evaporates for their grandsons as their phenotype becomes common. Counter to prevailing theory, we show that female preference can be maintained through indirect selection.
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Affiliation(s)
- Tomos Potter
- Department of Biological Science, Florida State University, Tallahassee, Florida, USA
| | - Jeff Arendt
- Department of Evolution, Ecology and Organismal Biology, University of California, Riverside, California, USA
| | - Ronald D Bassar
- Department of Biological Sciences, Auburn University, Auburn, Alabama, USA
| | - Beth Watson
- Department of Biology, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Paul Bentzen
- Department of Biology, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Joseph Travis
- Department of Biological Science, Florida State University, Tallahassee, Florida, USA
| | - David N Reznick
- Department of Evolution, Ecology and Organismal Biology, University of California, Riverside, California, USA
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5
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Hu K, Wang P, He J, Perc M, Shi L. Complex evolutionary interactions in multiple populations. Phys Rev E 2023; 107:044301. [PMID: 37198848 DOI: 10.1103/physreve.107.044301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Accepted: 03/22/2023] [Indexed: 05/19/2023]
Abstract
In competitive settings that entail several populations, individuals often engage in intra- and interpopulation interactions that determine their fitness and evolutionary success. With this simple motivation, we here study a multipopulation model where individuals engage in group interactions within their own population and in pairwise interactions with individuals from different populations. We use the evolutionary public goods game and the prisoner's dilemma game to describe these group and pairwise interactions, respectively. We also take into account asymmetry in the extent to which group and pairwise interactions determine the fitness of individuals. We find that interactions across multiple populations reveal new mechanisms through which the evolution of cooperation can be promoted, but this depends on the level of interaction asymmetry. If inter- and intrapopulation interactions are symmetric, the sole presence of multiple populations promotes the evolution of cooperation. Asymmetry in the interactions can further promote cooperation at the expense of the coexistence of the competing strategies. An in-depth analysis of the spatiotemporal dynamics reveals loop-dominated structures and pattern formation that can explain the various evolutionary outcomes. Thus, complex evolutionary interactions in multiple populations reveal an intricate interplay between cooperation and coexistence, and they also open up the path toward further explorations of multipopulation games and biodiversity.
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Affiliation(s)
- Kaipeng Hu
- School of Statistics and Mathematics, Yunnan University of Finance and Economics, Kunming 650221, China
| | - Pengyue Wang
- School of Statistics and Mathematics, Yunnan University of Finance and Economics, Kunming 650221, China
| | - Junzhou He
- School of Statistics and Mathematics, Yunnan University of Finance and Economics, Kunming 650221, China
| | - Matjaž Perc
- Faculty of Natural Sciences and Mathematics, University of Maribor, 2000 Maribor, Slovenia
- Department of Medical Research, China Medical University Hospital, China Medical University, Taichung 404332, Taiwan
- Alma Mater Europaea, 2000 Maribor, Slovenia
- Complexity Science Hub Vienna, 1080 Vienna, Austria
- Department of Physics, Kyung Hee University, 26 Kyungheedae-ro, Dongdaemun-gu, Seoul, Republic of Korea
| | - Lei Shi
- School of Statistics and Mathematics, Yunnan University of Finance and Economics, Kunming 650221, China
- Interdisciplinary Research Institute of Data Science, Shanghai Lixin University of Accounting and Finance, Shanghai 201209, China
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6
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Paniw M, García-Callejas D, Lloret F, Bassar RD, Travis J, Godoy O. Pathways to global-change effects on biodiversity: new opportunities for dynamically forecasting demography and species interactions. Proc Biol Sci 2023; 290:20221494. [PMID: 36809806 PMCID: PMC9943645 DOI: 10.1098/rspb.2022.1494] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2022] [Accepted: 01/12/2023] [Indexed: 02/23/2023] Open
Abstract
In structured populations, persistence under environmental change may be particularly threatened when abiotic factors simultaneously negatively affect survival and reproduction of several life cycle stages, as opposed to a single stage. Such effects can then be exacerbated when species interactions generate reciprocal feedbacks between the demographic rates of the different species. Despite the importance of such demographic feedbacks, forecasts that account for them are limited as individual-based data on interacting species are perceived to be essential for such mechanistic forecasting-but are rarely available. Here, we first review the current shortcomings in assessing demographic feedbacks in population and community dynamics. We then present an overview of advances in statistical tools that provide an opportunity to leverage population-level data on abundances of multiple species to infer stage-specific demography. Lastly, we showcase a state-of-the-art Bayesian method to infer and project stage-specific survival and reproduction for several interacting species in a Mediterranean shrub community. This case study shows that climate change threatens populations most strongly by changing the interaction effects of conspecific and heterospecific neighbours on both juvenile and adult survival. Thus, the repurposing of multi-species abundance data for mechanistic forecasting can substantially improve our understanding of emerging threats on biodiversity.
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Affiliation(s)
- Maria Paniw
- Department of Conservation Biology and Global Change, Estación Biológica de Doñana (EBD-CSIC), Seville, 41001 Spain
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich 8057, Switzerland
| | - David García-Callejas
- Department of Integrative Ecology, Estación Biológica de Doñana (EBD-CSIC), Seville, 41001 Spain
- Instituto Universitario de Investigación Marina (INMAR), Departamento de Biología, Universidad de Cádiz, Campus Río San Pedro, 11510 Puerto Real, Spain
| | - Francisco Lloret
- Center for Ecological Research and Forestry Applications (CREAF), Cerdanyola del Vallès 08193, Spain
- Department Animal Biology, Plant Biology and Ecology, Universitat Autònoma Barcelona, Cerdanyola del Vallès 08193, Spain
| | - Ronald D. Bassar
- Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA
| | - Joseph Travis
- Department of Biological Science, Florida State University, Tallahassee, FL 32306, USA
| | - Oscar Godoy
- Instituto Universitario de Investigación Marina (INMAR), Departamento de Biología, Universidad de Cádiz, Campus Río San Pedro, 11510 Puerto Real, Spain
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Potter T, Felmy A. An ecological explanation for hyperallometric scaling of reproduction. Funct Ecol 2022. [DOI: 10.1111/1365-2435.14045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Affiliation(s)
- Tomos Potter
- Department of Zoology University of Oxford Oxford OX1 3PS
| | - Anja Felmy
- Department of Zoology University of Oxford Oxford OX1 3PS
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8
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Salguero‐Gómez R, Jackson J, Gascoigne SJL. Four key challenges in the open-data revolution. J Anim Ecol 2021; 90:2000-2004. [PMID: 34525215 PMCID: PMC8518073 DOI: 10.1111/1365-2656.13567] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2021] [Accepted: 07/06/2021] [Indexed: 12/01/2022]
Abstract
In Focus: Culina, A., Adriaensen, F., Bailey, L. D., et al. (2021) Connecting the data landscape of long-term ecological studies: The SPI-Birds data hub. Journal of Animal Ecology, https://doi.org/10.1111/1365-2656.13388. Long-term, individual-based datasets have been at the core of many key discoveries in ecology, and calls for the collection, curation and release of these kinds of ecological data are contributing to a flourishing open-data revolution in ecology. Birds, in particular, have been the focus of international research for decades, resulting in a number of uniquely long-term studies, but accessing these datasets has been historically challenging. Culina et al. (2021) introduce an online repository of individual-level, long-term bird records with ancillary data (e.g. genetics), which will enable key ecological questions to be answered on a global scale. As well as these opportunities, however, we argue that the ongoing open-data revolution comes with four key challenges relating to the (1) harmonisation of, (2) biases in, (3) expertise in and (4) communication of, open ecological data. Here, we discuss these challenges and how key efforts such as those by Culina et al. are using FAIR (Findable, Accessible, Interoperable and Reproducible) principles to overcome them. The open-data revolution will undoubtedly reshape our understanding of ecology, but with it the ecological community has a responsibility to ensure this revolution is ethical and effective.
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Affiliation(s)
- Roberto Salguero‐Gómez
- Department of ZoologyUniversity of OxfordOxfordUK
- Max Planck Institute for Demographic ResearchRostockGermany
| | - John Jackson
- Department of ZoologyUniversity of OxfordOxfordUK
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9
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Anaya-Rojas JM, Bassar RD, Potter T, Blanchette A, Callahan S, Framstead N, Reznick D, Travis J. The evolution of size-dependent competitive interactions promotes species coexistence. J Anim Ecol 2021; 90:2704-2717. [PMID: 34389988 DOI: 10.1111/1365-2656.13577] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2021] [Accepted: 08/04/2021] [Indexed: 12/01/2022]
Abstract
Theory indicates that competing species coexist in a community when intraspecific competition is stronger than interspecific competition. When body size determines the outcome of competitive interactions between individuals, coexistence depends also on how resource use and the ability to compete for these resources change with body size. Testing coexistence theory in size-structured communities, therefore, requires disentangling the effects of size-dependent competitive abilities and niche shifts. Here, we tested the hypothesis that the evolution of species- and size-dependent competitive asymmetries increased the likelihood of coexistence between interacting species. We experimentally estimated the effects of size-dependent competitive interactions on somatic growth rates of two interacting fish species, Trinidadian guppies Poecilia reticulata and killifish Rivulus hartii. We controlled for the effects of size-dependent changes in the niche at two competitive settings representing the early (allopatric) and late (sympatric) evolutionary stages of a killifish-guppy community. We fitted the growth data to a model that incorporates species- and size-dependent competitive asymmetries to test whether changes in the competitive interactions across sizes increased the likelihood of species coexistence from allopatry to sympatry. We found that guppies are competitively superior to killifish but were less so in sympatric populations. The decrease in the effects of interspecific competition on the fitness of killifish and increase in the interspecific effect on guppies' fitness increased the likelihood that sympatric guppies and killifish will coexist. However, while the competitive asymmetries between the species changed consistently between allopatry and sympatry between drainages, the magnitude of the size-dependent competitive asymmetries varied between drainages. These results demonstrate the importance of integrating evolution and trait-based interactions into the research on how species coexist.
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Affiliation(s)
- Jaime M Anaya-Rojas
- Department of Biological Science, Florida State University, Tallahassee, FL, USA.,Institute for Evolution and Biodiversity, University of Münster, Münster, Germany
| | - Ronald D Bassar
- Department of Biology, Williams College, Williamstown, MA, USA
| | - Tomos Potter
- Department of Zoology, University of Oxford, Oxford, UK
| | - Allison Blanchette
- Department of Biological Science, Florida State University, Tallahassee, FL, USA
| | - Shay Callahan
- University of Illinois at Urbana-Champaign, Urbana-Champaign, IL, USA
| | - Nick Framstead
- Department of Biological Science, Florida State University, Tallahassee, FL, USA
| | - David Reznick
- Department of Evolution, Ecology and Organismal Biology, University of California, Riverside, CA, USA
| | - Joseph Travis
- Department of Biological Science, Florida State University, Tallahassee, FL, USA
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10
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Affiliation(s)
- Eric Edeline
- Sorbonne Université/UPMC Univ. Paris 06/CNRS/INRA/IRD/Paris Diderot Univ. Paris 07/UPEC/Institut d'Ecologie et des Sciences de l'Environnement – Paris (iEES‐Paris) Paris France
- ESE Ecology and Ecosystem Health, INRAE, Agocampus Ouest Rennes France
| | - Nicolas Loeuille
- Sorbonne Université/UPMC Univ. Paris 06/CNRS/INRA/IRD/Paris Diderot Univ. Paris 07/UPEC/Institut d'Ecologie et des Sciences de l'Environnement – Paris (iEES‐Paris) Paris France
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11
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Doulcier G, Takacs P, Bourrat P. Taming fitness: Organism-environment interdependencies preclude long-term fitness forecasting. Bioessays 2020; 43:e2000157. [PMID: 33236344 DOI: 10.1002/bies.202000157] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2020] [Revised: 09/25/2020] [Accepted: 09/29/2020] [Indexed: 01/09/2023]
Abstract
Fitness is a central but notoriously vexing concept in evolutionary biology. The propensity interpretation of fitness is often regarded as the least problematic account for fitness. It ties an individual's fitness to a probabilistic capacity to produce offspring. Fitness has a clear causal role in evolutionary dynamics under this account. Nevertheless, the propensity interpretation faces its share of problems. We discuss three of these. We first show that a single scalar value is an incomplete summary of a propensity. Second, we argue that the widespread method of "abstracting away" environmental idiosyncrasies by averaging over reproductive output in different environments is not a valid approach when environmental changes are irreversible. Third, we point out that expanding the range of applicability for fitness measures by averaging over more environments or longer time scales (so as to ensure environmental reversibility) reduces one's ability to distinguish selectively relevant differences among individuals because of mutation and eco-evolutionary feedbacks. This series of problems leads us to conclude that a general value of fitness that is both explanatory and predictive cannot be attained. We advocate for the use of propensity-compatible methods, such as adaptive dynamics, which can accommodate these difficulties.
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Affiliation(s)
- Guilhem Doulcier
- Department of Philosophy & Charles Perkins Centre, The University of Sydney, Sydney, New South Wales, 2006, Australia
| | - Peter Takacs
- Department of Philosophy & Charles Perkins Centre, The University of Sydney, Sydney, New South Wales, 2006, Australia
| | - Pierrick Bourrat
- Department of Philosophy & Charles Perkins Centre, The University of Sydney, Sydney, New South Wales, 2006, Australia.,Department of Philosophy, Macquarie University, Sydney, New South Wales, 2109, Australia
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12
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Abstract
Demonstrating asymmetric competition in natural systems is difficult, as the effect of large individuals on small ones has to be measured, and vice versa. Numerous experiments have quantified one side of the interaction, typically the effect of large individuals on small ones. Here, we demonstrate, using a long-term study of guppies, that an individual’s performance depends on its relative size, with large individuals being competitively dominant. Accurate prediction of both the mean and variance in body size was possible by using models incorporating asymmetric competition, whereas in models where individuals are competitively equivalent, the predictions were poor. Biotic interactions are central to both ecological and evolutionary dynamics. In the vast majority of empirical studies, the strength of intraspecific interactions is estimated by using simple measures of population size. Biologists have long known that these are crude metrics, with experiments and theory suggesting that interactions between individuals should depend on traits, such as body size. Despite this, it has been difficult to estimate the impact of traits on competitive ability from ecological field data, and this explains why the strength of biotic interactions has empirically been treated in a simplistic manner. Using long-term observational data from four different populations, we show that large Trinidadian guppies impose a significantly larger competitive pressure on conspecifics than individuals that are smaller; in other words, competition is asymmetric. When we incorporate this asymmetry into integral projection models, the predicted size structure is much closer to what we see in the field compared with models where competition is independent of body size. This difference in size structure translates into a twofold difference in reproductive output. This demonstrates how the nature of ecological interactions drives the size structure, which, in turn, will have important implications for both the ecological and evolutionary dynamics.
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