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For: Diener TO. Are viroids escaped introns? Proc Natl Acad Sci U S A 2010;78:5014-5. [PMID: 16593072 PMCID: PMC320322 DOI: 10.1073/pnas.78.8.5014] [Citation(s) in RCA: 71] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
Number Cited by Other Article(s)
1
Lezzhov AA, Atabekova AK, Chergintsev DA, Lazareva EA, Solovyev AG, Morozov SY. Viroids and Retrozymes: Plant Circular RNAs Capable of Autonomous Replication. PLANTS (BASEL, SWITZERLAND) 2024;14:61. [PMID: 39795321 PMCID: PMC11722881 DOI: 10.3390/plants14010061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2024] [Revised: 12/23/2024] [Accepted: 12/26/2024] [Indexed: 01/13/2025]
2
Ortolá B, Daròs JA. Viroids: Non-Coding Circular RNAs Able to Autonomously Replicate and Infect Higher Plants. BIOLOGY 2023;12:172. [PMID: 36829451 PMCID: PMC9952643 DOI: 10.3390/biology12020172] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Revised: 01/16/2023] [Accepted: 01/17/2023] [Indexed: 01/24/2023]
3
Manrubia S. The simple emergence of complex molecular function. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2022;380:20200422. [PMID: 35599566 DOI: 10.1098/rsta.2020.0422] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
4
Flores R, Navarro B, Serra P, Di Serio F. A scenario for the emergence of protoviroids in the RNA world and for their further evolution into viroids and viroid-like RNAs by modular recombinations and mutations. Virus Evol 2022;8:veab107. [PMID: 35223083 PMCID: PMC8865084 DOI: 10.1093/ve/veab107] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2021] [Revised: 12/10/2021] [Accepted: 01/14/2022] [Indexed: 11/14/2022]  Open
5
Viroids and Viroid-like Circular RNAs: Do They Descend from Primordial Replicators? LIFE (BASEL, SWITZERLAND) 2022;12:life12010103. [PMID: 35054497 PMCID: PMC8781251 DOI: 10.3390/life12010103] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/21/2021] [Revised: 01/10/2022] [Accepted: 01/11/2022] [Indexed: 01/09/2023]
6
Venkataraman S, Badar U, Shoeb E, Hashim G, AbouHaidar M, Hefferon K. An Inside Look into Biological Miniatures: Molecular Mechanisms of Viroids. Int J Mol Sci 2021;22:2795. [PMID: 33801996 PMCID: PMC8001946 DOI: 10.3390/ijms22062795] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2020] [Revised: 03/01/2021] [Accepted: 03/03/2021] [Indexed: 11/17/2022]  Open
7
Badar U, Venkataraman S, AbouHaidar M, Hefferon K. Molecular interactions of plant viral satellites. Virus Genes 2020;57:1-22. [PMID: 33226576 DOI: 10.1007/s11262-020-01806-9] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2019] [Accepted: 10/24/2020] [Indexed: 12/18/2022]
8
Adkar-Purushothama CR, Perreault JP. Impact of Nucleic Acid Sequencing on Viroid Biology. Int J Mol Sci 2020;21:ijms21155532. [PMID: 32752288 PMCID: PMC7432327 DOI: 10.3390/ijms21155532] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2020] [Revised: 07/29/2020] [Accepted: 07/30/2020] [Indexed: 12/26/2022]  Open
9
Steger G, Riesner D. Viroid research and its significance for RNA technology and basic biochemistry. Nucleic Acids Res 2019;46:10563-10576. [PMID: 30304486 PMCID: PMC6237808 DOI: 10.1093/nar/gky903] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2018] [Accepted: 09/24/2018] [Indexed: 12/27/2022]  Open
10
Catalán P, Elena SF, Cuesta JA, Manrubia S. Parsimonious Scenario for the Emergence of Viroid-Like Replicons De Novo. Viruses 2019;11:v11050425. [PMID: 31075860 PMCID: PMC6563258 DOI: 10.3390/v11050425] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2019] [Revised: 04/30/2019] [Accepted: 05/02/2019] [Indexed: 01/12/2023]  Open
11
de la Peña M, Cervera A. Circular RNAs with hammerhead ribozymes encoded in eukaryotic genomes: The enemy at home. RNA Biol 2017;14:985-991. [PMID: 28448743 PMCID: PMC5680766 DOI: 10.1080/15476286.2017.1321730] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]  Open
12
Flores R, Owens RA, Taylor J. Pathogenesis by subviral agents: viroids and hepatitis delta virus. Curr Opin Virol 2016;17:87-94. [PMID: 26897654 DOI: 10.1016/j.coviro.2016.01.022] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2015] [Revised: 01/21/2016] [Accepted: 01/29/2016] [Indexed: 12/18/2022]
13
Pek JW, Okamura K. Regulatory RNAs discovered in unexpected places. WILEY INTERDISCIPLINARY REVIEWS-RNA 2015;6:671-86. [DOI: 10.1002/wrna.1309] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2015] [Revised: 08/14/2015] [Accepted: 08/21/2015] [Indexed: 12/20/2022]
14
Rao ALN, Kalantidis K. Virus-associated small satellite RNAs and viroids display similarities in their replication strategies. Virology 2015;479-480:627-36. [PMID: 25731957 DOI: 10.1016/j.virol.2015.02.018] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2014] [Revised: 02/01/2015] [Accepted: 02/10/2015] [Indexed: 12/15/2022]
15
Flores R, Gago-Zachert S, Serra P, Sanjuán R, Elena SF. Viroids: survivors from the RNA world? Annu Rev Microbiol 2014;68:395-414. [PMID: 25002087 DOI: 10.1146/annurev-micro-091313-103416] [Citation(s) in RCA: 124] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
16
Martinez G, Castellano M, Tortosa M, Pallas V, Gomez G. A pathogenic non-coding RNA induces changes in dynamic DNA methylation of ribosomal RNA genes in host plants. Nucleic Acids Res 2013;42:1553-62. [PMID: 24178032 PMCID: PMC3919566 DOI: 10.1093/nar/gkt968] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]  Open
17
Designing a bioengine for detection and analysis of base string on an affected sequence in high-concentration regions. BIOMED RESEARCH INTERNATIONAL 2013;2013:372646. [PMID: 24000321 PMCID: PMC3755424 DOI: 10.1155/2013/372646] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/04/2013] [Accepted: 07/13/2013] [Indexed: 11/17/2022]
18
Tessitori M, Maria G, Capasso C, Catara G, Rizza S, De Luca V, Catara A, Capasso A, Carginale V. Differential display analysis of gene expression in Etrog citron leaves infected by Citrus viroid III. ACTA ACUST UNITED AC 2007;1769:228-35. [PMID: 17475349 DOI: 10.1016/j.bbaexp.2007.03.004] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2006] [Revised: 03/14/2007] [Accepted: 03/16/2007] [Indexed: 11/30/2022]
19
Itaya A, Matsuda Y, Gonzales RA, Nelson RS, Ding B. Potato spindle tuber viroid strains of different pathogenicity induces and suppresses expression of common and unique genes in infected tomato. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2002;15:990-999. [PMID: 12437296 DOI: 10.1094/mpmi.2002.15.10.990] [Citation(s) in RCA: 63] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
20
Diener TO. Viroids and the nature of viroid diseases. ARCHIVES OF VIROLOGY. SUPPLEMENTUM 1999;15:203-20. [PMID: 10470280 DOI: 10.1007/978-3-7091-6425-9_15] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
21
Diener TO. Origin and evolution of viroids and viroid-like satellite RNAs. Virus Genes 1995;11:119-31. [PMID: 8828140 DOI: 10.1007/bf01728653] [Citation(s) in RCA: 53] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
22
Somerville RA, Bendheim PE, Bolton DC. The transmissible agent causing scrapie must contain more than protein. Rev Med Virol 1991. [DOI: 10.1002/rmv.1980010302] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
23
Elena SF, Dopazo J, Flores R, Diener TO, Moya A. Phylogeny of viroids, viroidlike satellite RNAs, and the viroidlike domain of hepatitis delta virus RNA. Proc Natl Acad Sci U S A 1991;88:5631-5634. [PMID: 1712103 PMCID: PMC51931 DOI: 10.1073/pnas.88.13.5631] [Citation(s) in RCA: 67] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]  Open
24
Diener TO. Circular RNAs: relics of precellular evolution? Proc Natl Acad Sci U S A 1989;86:9370-4. [PMID: 2480600 PMCID: PMC298497 DOI: 10.1073/pnas.86.23.9370] [Citation(s) in RCA: 121] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]  Open
25
Diener TO. Subviral pathogens of plants: the viroids. LA RICERCA IN CLINICA E IN LABORATORIO 1989;19:105-28. [PMID: 2672273 DOI: 10.1007/bf02871800] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
26
Hashimoto J, Koganezawa H. Nucleotide sequence and secondary structure of apple scar skin viroid. Nucleic Acids Res 1987;15:7045-52. [PMID: 3658673 PMCID: PMC306191 DOI: 10.1093/nar/15.17.7045] [Citation(s) in RCA: 59] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]  Open
27
Dinter-Gottlieb G. Viroids and virusoids are related to group I introns. Proc Natl Acad Sci U S A 1986;83:6250-4. [PMID: 3462692 PMCID: PMC386480 DOI: 10.1073/pnas.83.17.6250] [Citation(s) in RCA: 37] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]  Open
28
Hadidi A. Relationship of viroids and certain other plant pathogenic nucleic acids to group I and II introns. PLANT MOLECULAR BIOLOGY 1986;7:129-142. [PMID: 24302232 DOI: 10.1007/bf00040139] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 05/21/1986] [Indexed: 06/02/2023]
29
Diener TO. Viroid processing: a model involving the central conserved region and hairpin I. Proc Natl Acad Sci U S A 1986;83:58-62. [PMID: 3455758 PMCID: PMC322790 DOI: 10.1073/pnas.83.1.58] [Citation(s) in RCA: 64] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]  Open
30
Collmer CW, Hadidi A, Kaper JM. Nucleotide sequence of the satellite of peanut stunt virus reveals structural homologies with viroids and certain nuclear and mitochondrial introns. Proc Natl Acad Sci U S A 1985;82:3110-4. [PMID: 3858808 PMCID: PMC397724 DOI: 10.1073/pnas.82.10.3110] [Citation(s) in RCA: 32] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]  Open
31
Liu MH, Reddy R, Henning D, Spector D, Busch H. Primary and secondary structure of dinoflagellate U5 small nuclear RNA. Nucleic Acids Res 1984;12:1529-42. [PMID: 6199742 PMCID: PMC318594 DOI: 10.1093/nar/12.3.1529] [Citation(s) in RCA: 23] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]  Open
32
Riesner D, Colpan M, Goodman TC, Nagel L, Schumacher J, Steger G, Hofmann H. Dynamics and interactions of viroids. J Biomol Struct Dyn 1983;1:669-88. [PMID: 6400894 DOI: 10.1080/07391102.1983.10507474] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
33
Kiss T, Pósfai J, Solymosy F. Sequence homology between potato spindle tuber viroid and U3B snRNA. FEBS Lett 1983;163:217-20. [PMID: 6196230 DOI: 10.1016/0014-5793(83)80822-9] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
34
Cress DE, Kiefer MC, Owens RA. Construction of infectious potato spindle tuber viroid cDNA clones. Nucleic Acids Res 1983;11:6821-35. [PMID: 6314259 PMCID: PMC326416 DOI: 10.1093/nar/11.19.6821] [Citation(s) in RCA: 96] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]  Open
35
Kiefer MC, Owens RA, Diener TO. Structural similarities between viroids and transposable genetic elements. Proc Natl Acad Sci U S A 1983;80:6234-8. [PMID: 6312450 PMCID: PMC394270 DOI: 10.1073/pnas.80.20.6234] [Citation(s) in RCA: 84] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]  Open
36
Ohno T, Takamatsu N, Meshi T, Okada Y. Hop stunt viroid: molecular cloning and nucleotide sequence of the complete cDNA copy. Nucleic Acids Res 1983;11:6185-97. [PMID: 6312412 PMCID: PMC326366 DOI: 10.1093/nar/11.18.6185] [Citation(s) in RCA: 67] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]  Open
37
Structure and function of viroids. ACTA ACUST UNITED AC 1983. [DOI: 10.1007/bf00537813] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
38
Diener TO. Viroids. Adv Virus Res 1983;28:241-83. [PMID: 6362366 DOI: 10.1016/s0065-3527(08)60725-3] [Citation(s) in RCA: 29] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
39
Reddy R, Busch H. Small nuclear RNAs and RNA processing. PROGRESS IN NUCLEIC ACID RESEARCH AND MOLECULAR BIOLOGY 1983;30:127-62. [PMID: 6198692 DOI: 10.1016/s0079-6603(08)60685-6] [Citation(s) in RCA: 76] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
40
Rohde W, Rackwitz HR, Boege F, Sänger HL. Viroid RNA is accepted as a template for in vitro transcription by DNA-dependent DNA polymerase I and RNA polymerase from Escherichia coli. Biosci Rep 1982;2:929-39. [PMID: 6760914 DOI: 10.1007/bf01114900] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]  Open
41
Randles JW, Steger G, Riesner D. Structural transitions in viroid-like RNAs associated with cadang-cadang disease, velvet tobacco mottle virus, and Solanum nodiflorum mottle virus. Nucleic Acids Res 1982;10:5569-86. [PMID: 7145707 PMCID: PMC320907 DOI: 10.1093/nar/10.18.5569] [Citation(s) in RCA: 26] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]  Open
42
Viroid RNAs of cadang-cadang disease of coconuts. Nature 1982. [DOI: 10.1038/299316a0] [Citation(s) in RCA: 113] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
43
Kiss T, Solymosy F. Sequence homologies between a viroid and a small nuclear RNA (snRNA) species of mammalian origin. FEBS Lett 1982;144:318-20. [PMID: 6180931 DOI: 10.1016/0014-5793(82)80662-5] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
44
Avocado sunblotch viroid: primary sequence and proposed secondary structure. Nucleic Acids Res 1981;9:6527-37. [PMID: 7322921 PMCID: PMC327620 DOI: 10.1093/nar/9.23.6527] [Citation(s) in RCA: 126] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]  Open
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