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For: Selleck SB, Majors J. In vivo "photofootprint" changes at sequences between the yeast GAL1 upstream activating sequence and "TATA" element require activated GAL4 protein but not a functional TATA element. Proc Natl Acad Sci U S A 1988;85:5399-403. [PMID: 3041409 PMCID: PMC281764 DOI: 10.1073/pnas.85.15.5399] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]  Open
Number Cited by Other Article(s)
1
Murphy KF, Adams RM, Wang X, Balázsi G, Collins JJ. Tuning and controlling gene expression noise in synthetic gene networks. Nucleic Acids Res 2010;38:2712-26. [PMID: 20211838 PMCID: PMC2860118 DOI: 10.1093/nar/gkq091] [Citation(s) in RCA: 115] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
2
Blake WJ, Balázsi G, Kohanski MA, Isaacs FJ, Murphy KF, Kuang Y, Cantor CR, Walt DR, Collins JJ. Phenotypic consequences of promoter-mediated transcriptional noise. Mol Cell 2007;24:853-65. [PMID: 17189188 DOI: 10.1016/j.molcel.2006.11.003] [Citation(s) in RCA: 463] [Impact Index Per Article: 25.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2006] [Revised: 08/07/2006] [Accepted: 11/01/2006] [Indexed: 01/26/2023]
3
LaPointe P, Wei X, Gariépy J. A role for the protease-sensitive loop region of Shiga-like toxin 1 in the retrotranslocation of its A1 domain from the endoplasmic reticulum lumen. J Biol Chem 2005;280:23310-8. [PMID: 15817449 DOI: 10.1074/jbc.m414193200] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
4
Li XY, Virbasius A, Zhu X, Green MR. Enhancement of TBP binding by activators and general transcription factors. Nature 1999;399:605-9. [PMID: 10376604 DOI: 10.1038/21232] [Citation(s) in RCA: 196] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
5
Aboussekhra A, Thoma F. TATA-binding protein promotes the selective formation of UV-induced (6-4)-photoproducts and modulates DNA repair in the TATA box. EMBO J 1999;18:433-43. [PMID: 9889199 PMCID: PMC1171137 DOI: 10.1093/emboj/18.2.433] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
6
Fujita M, Hori Y, Shirahige K, Tsurimoto T, Yoshikawa H, Obuse C. Cell cycle dependent topological changes of chromosomal replication origins in Saccharomyces cerevisiae. Genes Cells 1998;3:737-49. [PMID: 9990508 DOI: 10.1046/j.1365-2443.1998.00226.x] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
7
Verdone L, Cesari F, Denis CL, Di Mauro E, Caserta M. Factors affecting Saccharomyces cerevisiae ADH2 chromatin remodeling and transcription. J Biol Chem 1997;272:30828-34. [PMID: 9388226 DOI: 10.1074/jbc.272.49.30828] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]  Open
8
Hartzog GA, Winston F. Nucleosomes and transcription: recent lessons from genetics. Curr Opin Genet Dev 1997;7:192-8. [PMID: 9115423 DOI: 10.1016/s0959-437x(97)80128-1] [Citation(s) in RCA: 44] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
9
Gal4 protein binding is required but not sufficient for derepression and induction of GAL2 expression. J Biol Chem 1993. [DOI: 10.1016/s0021-9258(18)41510-4] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]  Open
10
Promoter elements determining weak expression of the GAL4 regulatory gene of Saccharomyces cerevisiae. Mol Cell Biol 1993. [PMID: 8393142 DOI: 10.1128/mcb.13.8.4999] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
11
Griggs DW, Johnston M. Promoter elements determining weak expression of the GAL4 regulatory gene of Saccharomyces cerevisiae. Mol Cell Biol 1993;13:4999-5009. [PMID: 8393142 PMCID: PMC360147 DOI: 10.1128/mcb.13.8.4999-5009.1993] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]  Open
12
Axelrod JD, Reagan MS, Majors J. GAL4 disrupts a repressing nucleosome during activation of GAL1 transcription in vivo. Genes Dev 1993;7:857-69. [PMID: 8491382 DOI: 10.1101/gad.7.5.857] [Citation(s) in RCA: 90] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
13
Pehrson JR, Cohen LH. Effects of DNA looping on pyrimidine dimer formation. Nucleic Acids Res 1992;20:1321-4. [PMID: 1561089 PMCID: PMC312177 DOI: 10.1093/nar/20.6.1321] [Citation(s) in RCA: 44] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]  Open
14
Two systems of glucose repression of the GAL1 promoter in Saccharomyces cerevisiae. Mol Cell Biol 1990. [PMID: 2201902 DOI: 10.1128/mcb.10.9.4757] [Citation(s) in RCA: 82] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
15
Flick JS, Johnston M. Two systems of glucose repression of the GAL1 promoter in Saccharomyces cerevisiae. Mol Cell Biol 1990;10:4757-69. [PMID: 2201902 PMCID: PMC361077 DOI: 10.1128/mcb.10.9.4757-4769.1990] [Citation(s) in RCA: 80] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]  Open
16
Nielsen PE. Chemical and photochemical probing of DNA complexes. J Mol Recognit 1990;3:1-25. [PMID: 2191698 DOI: 10.1002/jmr.300030102] [Citation(s) in RCA: 111] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
17
Uchida K, Pyle AM, Morii T, Barton JK. High resolution footprinting of EcoRI and distamycin with Rh(phi)2(bpy)3+, a new photofootprinting reagent. Nucleic Acids Res 1989;17:10259-79. [PMID: 2602152 PMCID: PMC335299 DOI: 10.1093/nar/17.24.10259] [Citation(s) in RCA: 46] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]  Open
18
Nielsen PE. In vivo footprinting: studies of protein--DNA interactions in gene regulation. Bioessays 1989;11:152-5. [PMID: 2686631 DOI: 10.1002/bies.950110510] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
19
Becker MM, Wang Z, Grossmann G, Becherer KA. Genomic footprinting in mammalian cells with ultraviolet light. Proc Natl Acad Sci U S A 1989;86:5315-9. [PMID: 2748587 PMCID: PMC297612 DOI: 10.1073/pnas.86.14.5315] [Citation(s) in RCA: 28] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]  Open
20
Axelrod JD, Majors J. An improved method for photofootprinting yeast genes in vivo using Taq polymerase. Nucleic Acids Res 1989;17:171-83. [PMID: 2643080 PMCID: PMC331543 DOI: 10.1093/nar/17.1.171] [Citation(s) in RCA: 79] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]  Open
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