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For: Graham DE, Overbeek R, Olsen GJ, Woese CR. An archaeal genomic signature. Proc Natl Acad Sci U S A 2000;97:3304-8. [PMID: 10716711 PMCID: PMC16234 DOI: 10.1073/pnas.97.7.3304] [Citation(s) in RCA: 61] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/22/1999] [Indexed: 11/18/2022]  Open
Number Cited by Other Article(s)
1
Fry M. The discovery of archaea: from observed anomaly to consequential restructuring of the phylogenetic tree. HISTORY AND PHILOSOPHY OF THE LIFE SCIENCES 2024;46:16. [PMID: 38530473 PMCID: PMC10965645 DOI: 10.1007/s40656-024-00616-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2023] [Accepted: 02/14/2024] [Indexed: 03/28/2024]
2
Phylogenomic Analysis of Metagenome-Assembled Genomes Deciphered Novel Acetogenic Nitrogen-Fixing Bathyarchaeota from Hot Spring Sediments. Microbiol Spectr 2022;10:e0035222. [PMID: 35647693 PMCID: PMC9241837 DOI: 10.1128/spectrum.00352-22] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
3
Harish A. What is an archaeon and are the Archaea really unique? PeerJ 2018;6:e5770. [PMID: 30357005 PMCID: PMC6196074 DOI: 10.7717/peerj.5770] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2018] [Accepted: 09/05/2018] [Indexed: 12/05/2022]  Open
4
Tavares NK, Zayas CL, Escalante-Semerena JC. The Methanosarcina mazei MM2060 Gene Encodes a Bifunctional Kinase/Decarboxylase Enzyme Involved in Cobamide Biosynthesis. Biochemistry 2018;57:4478-4495. [PMID: 29950091 PMCID: PMC6143143 DOI: 10.1021/acs.biochem.8b00546] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
5
Ferreira-Cerca S. Life and Death of Ribosomes in Archaea. ACTA ACUST UNITED AC 2017. [DOI: 10.1007/978-3-319-65795-0_6] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
6
Das S, Chottopadhyay B, Sahoo S. Comparative Analysis of Predicted Gene Expression among Crenarchaeal Genomes. Genomics Inform 2017;15:38-47. [PMID: 28416948 PMCID: PMC5389947 DOI: 10.5808/gi.2017.15.1.38] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2016] [Revised: 11/28/2016] [Accepted: 01/26/2017] [Indexed: 12/13/2022]  Open
7
Nkamga VD, Henrissat B, Drancourt M. Archaea: Essential inhabitants of the human digestive microbiota. ACTA ACUST UNITED AC 2017. [DOI: 10.1016/j.humic.2016.11.005] [Citation(s) in RCA: 74] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
8
Torregrosa-Crespo J, Martínez-Espinosa RM, Esclapez J, Bautista V, Pire C, Camacho M, Richardson DJ, Bonete MJ. Anaerobic Metabolism in Haloferax Genus: Denitrification as Case of Study. Adv Microb Physiol 2016;68:41-85. [PMID: 27134021 DOI: 10.1016/bs.ampbs.2016.02.001] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
9
Zepeda Mendoza ML, Sicheritz-Pontén T, Gilbert MTP. Environmental genes and genomes: understanding the differences and challenges in the approaches and software for their analyses. Brief Bioinform 2015;16:745-58. [PMID: 25673291 PMCID: PMC4570204 DOI: 10.1093/bib/bbv001] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2014] [Revised: 12/16/2014] [Indexed: 01/19/2023]  Open
10
Garrett RA. A backward view from 16S rRNA to archaea to the universal tree of life to progenotes: reminiscences of Carl Woese. RNA Biol 2014;11:232-5. [PMID: 24607972 DOI: 10.4161/rna.28228] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]  Open
11
[Gut microbiota in health and disease]. REVISTA DE GASTROENTEROLOGÍA DE MÉXICO 2013;78:240-8. [PMID: 24290319 DOI: 10.1016/j.rgmx.2013.04.004] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 02/25/2013] [Revised: 04/13/2013] [Accepted: 04/16/2013] [Indexed: 12/26/2022]
12
Icaza-Chávez M. Gut microbiota in health and disease. REVISTA DE GASTROENTEROLOGÍA DE MÉXICO (ENGLISH EDITION) 2013. [DOI: 10.1016/j.rgmxen.2014.02.009] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]  Open
13
Prakash O, Jangid K, Shouche YS. Carl woese: from biophysics to evolutionary microbiology. Indian J Microbiol 2013;53:247-52. [PMID: 24426118 DOI: 10.1007/s12088-013-0401-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2013] [Accepted: 03/26/2013] [Indexed: 10/27/2022]  Open
14
Nikolic N, Smole Z, Krisko A. Proteomic properties reveal phyloecological clusters of Archaea. PLoS One 2012;7:e48231. [PMID: 23133575 PMCID: PMC3485053 DOI: 10.1371/journal.pone.0048231] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2011] [Accepted: 09/28/2012] [Indexed: 11/18/2022]  Open
15
Nguyen-Hieu T, Khelaifia S, Aboudharam G, Drancourt M. Methanogenic archaea in subgingival sites: a review. APMIS 2012;121:467-77. [PMID: 23078250 DOI: 10.1111/apm.12015] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2012] [Accepted: 09/20/2012] [Indexed: 02/06/2023]
16
Gramzow L, Barker E, Schulz C, Ambrose B, Ashton N, Theißen G, Litt A. Selaginella Genome Analysis - Entering the "Homoplasy Heaven" of the MADS World. FRONTIERS IN PLANT SCIENCE 2012;3:214. [PMID: 23049534 PMCID: PMC3442193 DOI: 10.3389/fpls.2012.00214] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2012] [Accepted: 08/23/2012] [Indexed: 05/05/2023]
17
Capes MD, DasSarma P, DasSarma S. The core and unique proteins of haloarchaea. BMC Genomics 2012;13:39. [PMID: 22272718 PMCID: PMC3287961 DOI: 10.1186/1471-2164-13-39] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2011] [Accepted: 01/24/2012] [Indexed: 11/10/2022]  Open
18
Jarrell KF, Walters AD, Bochiwal C, Borgia JM, Dickinson T, Chong JPJ. Major players on the microbial stage: why archaea are important. MICROBIOLOGY (READING, ENGLAND) 2011;157:919-936. [PMID: 21330437 DOI: 10.1099/mic.0.047837-0] [Citation(s) in RCA: 57] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
19
Dagan T, Roettger M, Bryant D, Martin W. Genome networks root the tree of life between prokaryotic domains. Genome Biol Evol 2010;2:379-92. [PMID: 20624742 PMCID: PMC2997548 DOI: 10.1093/gbe/evq025] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]  Open
20
Gencic S, Duin EC, Grahame DA. Tight coupling of partial reactions in the acetyl-CoA decarbonylase/synthase (ACDS) multienzyme complex from Methanosarcina thermophila: acetyl C-C bond fragmentation at the a cluster promoted by protein conformational changes. J Biol Chem 2010;285:15450-15463. [PMID: 20202935 DOI: 10.1074/jbc.m109.080994] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
21
Misra A, Surolia N, Surolia A. Evolutionary significance of self-acylation property in acyl carrier proteins. IUBMB Life 2009;61:853-9. [DOI: 10.1002/iub.224] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
22
Grochowski LL, Xu H, White RH. An iron(II) dependent formamide hydrolase catalyzes the second step in the archaeal biosynthetic pathway to riboflavin and 7,8-didemethyl-8-hydroxy-5-deazariboflavin. Biochemistry 2009;48:4181-8. [PMID: 19309161 DOI: 10.1021/bi802341p] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
23
How the microbial world saved evolution from the scylla of molecular biology and the charybdis of the modern synthesis. Microbiol Mol Biol Rev 2009;73:14-21. [PMID: 19258530 DOI: 10.1128/mmbr.00002-09] [Citation(s) in RCA: 63] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]  Open
24
Swenson KM, Moret BME. Inversion-based genomic signatures. BMC Bioinformatics 2009;10 Suppl 1:S7. [PMID: 19208174 PMCID: PMC2648787 DOI: 10.1186/1471-2105-10-s1-s7] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]  Open
25
Sheppard K, Söll D. On the evolution of the tRNA-dependent amidotransferases, GatCAB and GatDE. J Mol Biol 2008;377:831-44. [PMID: 18279892 PMCID: PMC2366055 DOI: 10.1016/j.jmb.2008.01.016] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2007] [Revised: 12/21/2007] [Accepted: 01/02/2008] [Indexed: 11/19/2022]
26
Payandeh J, Pai EF. Enzyme-Driven Speciation: Crystallizing Archaea via Lipid Capture. J Mol Evol 2007;64:364-74. [PMID: 17253090 DOI: 10.1007/s00239-006-0141-8] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2006] [Accepted: 11/19/2006] [Indexed: 10/23/2022]
27
McHardy AC, Martín HG, Tsirigos A, Hugenholtz P, Rigoutsos I. Accurate phylogenetic classification of variable-length DNA fragments. Nat Methods 2007;4:63-72. [PMID: 17179938 DOI: 10.1038/nmeth976] [Citation(s) in RCA: 296] [Impact Index Per Article: 16.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2006] [Accepted: 10/13/2006] [Indexed: 11/08/2022]
28
Woodson JD, Escalante-Semerena JC. The cbiS gene of the archaeon Methanopyrus kandleri AV19 encodes a bifunctional enzyme with adenosylcobinamide amidohydrolase and alpha-ribazole-phosphate phosphatase activities. J Bacteriol 2006;188:4227-35. [PMID: 16740929 PMCID: PMC1482944 DOI: 10.1128/jb.00227-06] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
29
Planet PJ. Tree disagreement: Measuring and testing incongruence in phylogenies. J Biomed Inform 2006;39:86-102. [PMID: 16243006 DOI: 10.1016/j.jbi.2005.08.008] [Citation(s) in RCA: 71] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2005] [Revised: 08/28/2005] [Accepted: 08/30/2005] [Indexed: 11/20/2022]
30
O'Donoghue P, Sethi A, Woese CR, Luthey-Schulten ZA. The evolutionary history of Cys-tRNACys formation. Proc Natl Acad Sci U S A 2005;102:19003-8. [PMID: 16380427 PMCID: PMC1323144 DOI: 10.1073/pnas.0509617102] [Citation(s) in RCA: 66] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
31
Salzano FM. Evolutionary change - patterns and processes. AN ACAD BRAS CIENC 2005;77:627-50. [PMID: 16341441 DOI: 10.1590/s0001-37652005000400006] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]  Open
32
Wilson GA, Bertrand N, Patel Y, Hughes JB, Feil EJ, Field D. Orphans as taxonomically restricted and ecologically important genes. MICROBIOLOGY-SGM 2005;151:2499-2501. [PMID: 16079329 DOI: 10.1099/mic.0.28146-0] [Citation(s) in RCA: 88] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
33
Bamford DH, Ravantti JJ, Rönnholm G, Laurinavicius S, Kukkaro P, Dyall-Smith M, Somerharju P, Kalkkinen N, Bamford JKH. Constituents of SH1, a novel lipid-containing virus infecting the halophilic euryarchaeon Haloarcula hispanica. J Virol 2005;79:9097-107. [PMID: 15994804 PMCID: PMC1168735 DOI: 10.1128/jvi.79.14.9097-9107.2005] [Citation(s) in RCA: 80] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
34
Allers T, Mevarech M. Archaeal genetics - the third way. Nat Rev Genet 2005;6:58-73. [PMID: 15630422 DOI: 10.1038/nrg1504] [Citation(s) in RCA: 174] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
35
Ownby K, Xu H, White RH. A Methanocaldococcus jannaschii archaeal signature gene encodes for a 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase. A new enzyme in purine biosynthesis. J Biol Chem 2004;280:10881-7. [PMID: 15623504 DOI: 10.1074/jbc.m413937200] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
36
Patel HM, Kraszewski JL, Mukhopadhyay B. The phosphoenolpyruvate carboxylase from Methanothermobacter thermautotrophicus has a novel structure. J Bacteriol 2004;186:5129-37. [PMID: 15262949 PMCID: PMC451628 DOI: 10.1128/jb.186.15.5129-5137.2004] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2004] [Accepted: 04/29/2004] [Indexed: 11/20/2022]  Open
37
Woese CR. A new biology for a new century. Microbiol Mol Biol Rev 2004;68:173-86. [PMID: 15187180 PMCID: PMC419918 DOI: 10.1128/mmbr.68.2.173-186.2004] [Citation(s) in RCA: 203] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
38
Allers T, Ngo HP, Mevarech M, Lloyd RG. Development of additional selectable markers for the halophilic archaeon Haloferax volcanii based on the leuB and trpA genes. Appl Environ Microbiol 2004;70:943-53. [PMID: 14766575 PMCID: PMC348920 DOI: 10.1128/aem.70.2.943-953.2004] [Citation(s) in RCA: 337] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2003] [Accepted: 11/13/2003] [Indexed: 11/20/2022]  Open
39
Waters E, Hohn MJ, Ahel I, Graham DE, Adams MD, Barnstead M, Beeson KY, Bibbs L, Bolanos R, Keller M, Kretz K, Lin X, Mathur E, Ni J, Podar M, Richardson T, Sutton GG, Simon M, Soll D, Stetter KO, Short JM, Noordewier M. The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism. Proc Natl Acad Sci U S A 2003;100:12984-8. [PMID: 14566062 PMCID: PMC240731 DOI: 10.1073/pnas.1735403100] [Citation(s) in RCA: 349] [Impact Index Per Article: 15.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
40
Gerdes SY, Scholle MD, Campbell JW, Balázsi G, Ravasz E, Daugherty MD, Somera AL, Kyrpides NC, Anderson I, Gelfand MS, Bhattacharya A, Kapatral V, D'Souza M, Baev MV, Grechkin Y, Mseeh F, Fonstein MY, Overbeek R, Barabási AL, Oltvai ZN, Osterman AL. Experimental determination and system level analysis of essential genes in Escherichia coli MG1655. J Bacteriol 2003;185:5673-84. [PMID: 13129938 PMCID: PMC193955 DOI: 10.1128/jb.185.19.5673-5684.2003] [Citation(s) in RCA: 580] [Impact Index Per Article: 26.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
41
Kurland CG, Canback B, Berg OG. Horizontal gene transfer: a critical view. Proc Natl Acad Sci U S A 2003;100:9658-62. [PMID: 12902542 PMCID: PMC187805 DOI: 10.1073/pnas.1632870100] [Citation(s) in RCA: 265] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
42
Eckburg PB, Lepp PW, Relman DA. Archaea and their potential role in human disease. Infect Immun 2003;71:591-6. [PMID: 12540534 PMCID: PMC145348 DOI: 10.1128/iai.71.2.591-596.2003] [Citation(s) in RCA: 127] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
43
Brown JR. Ancient horizontal gene transfer. Nat Rev Genet 2003;4:121-32. [PMID: 12560809 DOI: 10.1038/nrg1000] [Citation(s) in RCA: 171] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
44
Doolittle WF, Boucher Y, Nesbø CL, Douady CJ, Andersson JO, Roger AJ. How big is the iceberg of which organellar genes in nuclear genomes are but the tip? Philos Trans R Soc Lond B Biol Sci 2003;358:39-57; discussion 57-8. [PMID: 12594917 PMCID: PMC1693099 DOI: 10.1098/rstb.2002.1185] [Citation(s) in RCA: 122] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
45
Gogarten JP, Doolittle WF, Lawrence JG. Prokaryotic evolution in light of gene transfer. Mol Biol Evol 2002;19:2226-38. [PMID: 12446813 DOI: 10.1093/oxfordjournals.molbev.a004046] [Citation(s) in RCA: 619] [Impact Index Per Article: 26.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
46
Woese CR. On the evolution of cells. Proc Natl Acad Sci U S A 2002;99:8742-7. [PMID: 12077305 PMCID: PMC124369 DOI: 10.1073/pnas.132266999] [Citation(s) in RCA: 408] [Impact Index Per Article: 17.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
47
Matte-Tailliez O, Brochier C, Forterre P, Philippe H. Archaeal phylogeny based on ribosomal proteins. Mol Biol Evol 2002;19:631-9. [PMID: 11961097 DOI: 10.1093/oxfordjournals.molbev.a004122] [Citation(s) in RCA: 140] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
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Bansal AK, Meyer TE. Evolutionary analysis by whole-genome comparisons. J Bacteriol 2002;184:2260-72. [PMID: 11914358 PMCID: PMC134949 DOI: 10.1128/jb.184.8.2260-2272.2002] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
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Zhaxybayeva O, Gogarten JP. Bootstrap, Bayesian probability and maximum likelihood mapping: exploring new tools for comparative genome analyses. BMC Genomics 2002;3:4. [PMID: 11918828 PMCID: PMC100357 DOI: 10.1186/1471-2164-3-4] [Citation(s) in RCA: 242] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2001] [Accepted: 02/05/2002] [Indexed: 11/10/2022]  Open
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Hartman H, Fedorov A. The origin of the eukaryotic cell: a genomic investigation. Proc Natl Acad Sci U S A 2002;99:1420-5. [PMID: 11805300 PMCID: PMC122206 DOI: 10.1073/pnas.032658599] [Citation(s) in RCA: 164] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
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