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For: Chandu D, Kumar A, Nandi D. PepN, the major Suc-LLVY-AMC-hydrolyzing enzyme in Escherichia coli, displays functional similarity with downstream processing enzymes in Archaea and eukarya. Implications in cytosolic protein degradation. J Biol Chem 2003;278:5548-56. [PMID: 12482750 DOI: 10.1074/jbc.m207926200] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
Number Cited by Other Article(s)
1
Wang S, Zhou Y, Wang Y, Tang K, Wang D, Hong J, Wang P, Ye S, Yan J, Li S, Zhou Z, Du J. Genetic landscape and evolution of Acinetobacter pittii, an underestimated emerging nosocomial pathogen. Commun Biol 2025;8:738. [PMID: 40360786 PMCID: PMC12075791 DOI: 10.1038/s42003-025-08156-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2024] [Accepted: 05/01/2025] [Indexed: 05/15/2025]  Open
2
Ando Y, Kobo A, Niwa T, Yamakawa A, Konoma S, Kobayashi Y, Nureki O, Taguchi H, Itoh Y, Chadani Y. A mini-hairpin shaped nascent peptide blocks translation termination by a distinct mechanism. Nat Commun 2025;16:2323. [PMID: 40057501 PMCID: PMC11890864 DOI: 10.1038/s41467-025-57659-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2024] [Accepted: 02/25/2025] [Indexed: 05/13/2025]  Open
3
Madabushi S, Chow KM, Song ES, Goswami A, Hersh LB, Rodgers DW. Structure of puromycin-sensitive aminopeptidase and polyglutamine binding. PLoS One 2023;18:e0287086. [PMID: 37440518 PMCID: PMC10343166 DOI: 10.1371/journal.pone.0287086] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2023] [Accepted: 06/22/2023] [Indexed: 07/15/2023]  Open
4
Conformational remodeling enhances activity of lanthipeptide zinc-metallopeptidases. Nat Chem Biol 2022;18:724-732. [PMID: 35513512 DOI: 10.1038/s41589-022-01018-2] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Accepted: 03/23/2022] [Indexed: 02/05/2023]
5
Narayan V, McMahon M, O'Brien JJ, McAllister F, Buffenstein R. Insights into the Molecular Basis of Genome Stability and Pristine Proteostasis in Naked Mole-Rats. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2021;1319:287-314. [PMID: 34424521 DOI: 10.1007/978-3-030-65943-1_11] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
6
Gao F, Xiao J, Huang G. Current scenario of tetrazole hybrids for antibacterial activity. Eur J Med Chem 2019;184:111744. [DOI: 10.1016/j.ejmech.2019.111744] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2019] [Revised: 06/05/2019] [Accepted: 09/26/2019] [Indexed: 12/18/2022]
7
Zn-dependent bifunctional proteases are responsible for leader peptide processing of class III lanthipeptides. Proc Natl Acad Sci U S A 2019;116:2533-2538. [PMID: 30679276 DOI: 10.1073/pnas.1815594116] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]  Open
8
Méndez Y, De Armas G, Pérez I, Rojas T, Valdés-Tresanco ME, Izquierdo M, Alonso Del Rivero M, Álvarez-Ginarte YM, Valiente PA, Soto C, de León L, Vasco AV, Scott WL, Westermann B, González-Bacerio J, Rivera DG. Discovery of potent and selective inhibitors of the Escherichia coli M1-aminopeptidase via multicomponent solid-phase synthesis of tetrazole-peptidomimetics. Eur J Med Chem 2018;163:481-499. [PMID: 30544037 DOI: 10.1016/j.ejmech.2018.11.074] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2018] [Revised: 11/12/2018] [Accepted: 11/30/2018] [Indexed: 12/14/2022]
9
Liu Y, Tu G, Lai X, Kuang B, Li S. Exploring ligand dissociation pathways from aminopeptidase N using random acceleration molecular dynamics simulation. J Mol Model 2016;22:236. [PMID: 27624165 DOI: 10.1007/s00894-016-3105-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2016] [Accepted: 09/01/2016] [Indexed: 11/30/2022]
10
Rawlings ND. Peptidase specificity from the substrate cleavage collection in the MEROPS database and a tool to measure cleavage site conservation. Biochimie 2016;122:5-30. [PMID: 26455268 PMCID: PMC4756867 DOI: 10.1016/j.biochi.2015.10.003] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2015] [Accepted: 10/05/2015] [Indexed: 11/11/2022]
11
Méndez Y, Pérez-Labrada K, González-Bacerio J, Valdés G, de los Chávez MÁ, Osuna J, Charli JL, Pascual I, Rivera DG. Combinatorial multicomponent access to natural-products-inspired peptidomimetics: discovery of selective inhibitors of microbial metallo-aminopeptidases. ChemMedChem 2014;9:2351-9. [PMID: 24989844 DOI: 10.1002/cmdc.201402140] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2014] [Indexed: 11/09/2022]
12
Enowashu E, Kandeler E, Schloter M, Rasche F, Engel M. Development of a primer system to study abundance and diversity of the gene coding for alanine aminopeptidase pepN gene in Gram-negative soil bacteria. J Microbiol Methods 2012;91:14-21. [PMID: 22796679 DOI: 10.1016/j.mimet.2012.07.001] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2012] [Accepted: 07/03/2012] [Indexed: 11/27/2022]
13
Characterization of a Vibrio fischeri aminopeptidase and evidence for its influence on an early stage of squid colonization. J Bacteriol 2012;194:3995-4002. [PMID: 22636772 DOI: 10.1128/jb.00108-12] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
14
Characterization of MtfA, a novel regulatory output signal protein of the glucose-phosphotransferase system in Escherichia coli K-12. J Bacteriol 2011;194:1024-35. [PMID: 22178967 DOI: 10.1128/jb.06387-11] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
15
Peters J, Schönegge AM, Rockel B, Baumeister W. Molecular ruler of tripeptidylpeptidase II: mechanistic principle of exopeptidase selectivity. Biochem Biophys Res Commun 2011;414:209-14. [PMID: 21946061 DOI: 10.1016/j.bbrc.2011.09.058] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2011] [Accepted: 09/11/2011] [Indexed: 11/28/2022]
16
Vinhas R, Cortes L, Cardoso I, Mendes VM, Manadas B, Todo-Bom A, Pires E, Veríssimo P. Pollen proteases compromise the airway epithelial barrier through degradation of transmembrane adhesion proteins and lung bioactive peptides. Allergy 2011;66:1088-98. [PMID: 21480927 DOI: 10.1111/j.1398-9995.2011.02598.x] [Citation(s) in RCA: 101] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
17
Bhosale M, Kadthur JC, Nandi D. Roles of Salmonella enterica serovar Typhimurium encoded Peptidase N during systemic infection of Ifnγ-/- mice. Immunobiology 2011;217:354-62. [PMID: 21813203 DOI: 10.1016/j.imbio.2011.07.010] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2011] [Accepted: 07/05/2011] [Indexed: 11/19/2022]
18
Kumar A, Bhosale M, Reddy S, Srinivasan N, Nandi D. Importance of non-conserved distal carboxyl terminal amino acids in two peptidases belonging to the M1 family: Thermoplasma acidophilum Tricorn interacting factor F2 and Escherichia coli Peptidase N. Biochimie 2009;91:1145-55. [DOI: 10.1016/j.biochi.2009.06.002] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2009] [Accepted: 06/02/2009] [Indexed: 10/20/2022]
19
Efficient production of active Vibrio proteolyticus aminopeptidase in Escherichia coli by co-expression with engineered vibriolysin. Appl Microbiol Biotechnol 2009;84:191-8. [PMID: 19557407 DOI: 10.1007/s00253-009-2089-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2009] [Revised: 06/08/2009] [Accepted: 06/10/2009] [Indexed: 10/20/2022]
20
Singh A, Sivaprasad CVS. Functional interpretation of APN receptor from M.sexta using a molecular model. Bioinformation 2009;3:321-5. [PMID: 19707293 PMCID: PMC2720666 DOI: 10.6026/97320630003321] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2008] [Revised: 11/01/2008] [Accepted: 01/02/2009] [Indexed: 11/23/2022]  Open
21
Durá MA, Rosenbaum E, Larabi A, Gabel F, Vellieux FMD, Franzetti B. The structural and biochemical characterizations of a novel TET peptidase complex from Pyrococcus horikoshii reveal an integrated peptide degradation system in hyperthermophilic Archaea. Mol Microbiol 2009;72:26-40. [DOI: 10.1111/j.1365-2958.2009.06600.x] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
22
Nguyen T, Zhang Z, Huang IH, Wu C, Merritt J, Shi W, Qi F. Genes involved in the repression of mutacin I production in Streptococcus mutans. MICROBIOLOGY-SGM 2009;155:551-556. [PMID: 19202103 DOI: 10.1099/mic.0.021303-0] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
23
Addlagatta A, Gay L, Matthews BW. Structural basis for the unusual specificity of Escherichia coli aminopeptidase N. Biochemistry 2008;47:5303-11. [PMID: 18416562 DOI: 10.1021/bi7022333] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
24
Kumar A, Nandi D. Characterization and role of Peptidase N from Salmonella enterica serovar Typhimurium. Biochem Biophys Res Commun 2006;353:706-12. [PMID: 17196937 DOI: 10.1016/j.bbrc.2006.12.073] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2006] [Accepted: 12/12/2006] [Indexed: 11/24/2022]
25
Addlagatta A, Gay L, Matthews BW. Structure of aminopeptidase N from Escherichia coli suggests a compartmentalized, gated active site. Proc Natl Acad Sci U S A 2006;103:13339-44. [PMID: 16938892 PMCID: PMC1569165 DOI: 10.1073/pnas.0606167103] [Citation(s) in RCA: 92] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
26
Abdallah J, Kern R, Malki A, Eckey V, Richarme G. Cloning, expression, and purification of the general stress protein YhbO from Escherichia coli. Protein Expr Purif 2006;47:455-60. [PMID: 16380269 DOI: 10.1016/j.pep.2005.11.011] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2005] [Revised: 11/14/2005] [Accepted: 11/14/2005] [Indexed: 11/29/2022]
27
Choi KH, Licht S. Control of peptide product sizes by the energy-dependent protease ClpAP. Biochemistry 2006;44:13921-31. [PMID: 16229481 DOI: 10.1021/bi0505060] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
28
Golich FC, Han M, Crowder MW. Over-expression, purification, and characterization of aminopeptidase N from Escherichia coli. Protein Expr Purif 2005;47:634-9. [PMID: 16380266 DOI: 10.1016/j.pep.2005.11.012] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2005] [Accepted: 11/14/2005] [Indexed: 10/25/2022]
29
Goettig P, Brandstetter H, Groll M, Göhring W, Konarev PV, Svergun DI, Huber R, Kim JS. X-ray Snapshots of Peptide Processing in Mutants of Tricorn-interacting Factor F1 from Thermoplasma acidophilum. J Biol Chem 2005;280:33387-96. [PMID: 15994304 DOI: 10.1074/jbc.m505030200] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
30
Durá MA, Receveur-Brechot V, Andrieu JP, Ebel C, Schoehn G, Roussel A, Franzetti B. Characterization of a TET-like Aminopeptidase Complex from the Hyperthermophilic Archaeon Pyrococcus horikoshii. Biochemistry 2005;44:3477-86. [PMID: 15736957 DOI: 10.1021/bi047736j] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
31
Malki A, Caldas T, Abdallah J, Kern R, Eckey V, Kim SJ, Cha SS, Mori H, Richarme G. Peptidase activity of the Escherichia coli Hsp31 chaperone. J Biol Chem 2004;280:14420-6. [PMID: 15550391 DOI: 10.1074/jbc.m408296200] [Citation(s) in RCA: 59] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
32
Chandu D, Nandi D. PepN is the major aminopeptidase in Escherichia coli: insights on substrate specificity and role during sodium-salicylate-induced stress. MICROBIOLOGY-SGM 2004;149:3437-3447. [PMID: 14663077 DOI: 10.1099/mic.0.26518-0] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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