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Gonzalez-Henao S, Schrenk MO. An astrobiological perspective on microbial biofilms: their importance for habitability and production of detectable and lasting biosignatures. Appl Environ Microbiol 2025; 91:e0177824. [PMID: 39927769 PMCID: PMC11921390 DOI: 10.1128/aem.01778-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/11/2025] Open
Abstract
The search for life elsewhere in the universe has remained one of the main goals of astrobiological exploration. In this quest, extreme environments on Earth have served as analogs to study the potential habitability of Mars and icy moons, which include but are not limited to hydrothermal vent systems, acid lakes, deserts, and polar ice, among others. Within the various forms that life manifests, biofilms constitute one of the most widespread phenotypes and are ubiquitous in extreme environments. Biofilms are structured communities of microorganisms enclosed in a matrix of extracellular polymeric substances (EPS) that protect against unfavorable and dynamic conditions. These concentrated structures and their associated chemistry may serve as unique and persistent signatures of life processes that may aid in their detection. Here we propose biofilms as a model system to understand the habitability of extraterrestrial systems and as sources of recognizable and persistent biosignatures for life detection. By testing these ideas in extreme analog environments on Earth, this approach could be used to guide and focus future exploration of samples encompassing the geologic record of early Earth as well as other planets and moons of our solar system.
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Affiliation(s)
- Sarah Gonzalez-Henao
- Department of Microbiology, Genetics, and Immunology, Michigan State University, East Lansing, Michigan, USA
- Department of Earth and Environmental Sciences, Michigan State University, East Lansing, Michigan, USA
| | - Matthew O. Schrenk
- Department of Microbiology, Genetics, and Immunology, Michigan State University, East Lansing, Michigan, USA
- Department of Earth and Environmental Sciences, Michigan State University, East Lansing, Michigan, USA
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2
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Batty CA, Pearson VK, Olsson-Francis K, Morgan G. Volatile organic compounds (VOCs) in terrestrial extreme environments: implications for life detection beyond Earth. Nat Prod Rep 2025; 42:93-112. [PMID: 39431456 DOI: 10.1039/d4np00037d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2024]
Abstract
Covering: 1961 to 2024Discovering and identifying unique natural products/biosignatures (signatures that can be used as evidence for past or present life) that are abundant, and complex enough that they indicate robust evidence of life is a multifaceted process. One distinct category of biosignatures being explored is organic compounds. A subdivision of these compounds not yet readily investigated are volatile organic compound (VOCs). When assessing these VOCs as a group (volatilome) a fingerprint of all VOCs within an environment allows the complex patterns in metabolic data to be unravelled. As a technique already successfully applied to many biological and ecological fields, this paper explores how analysis of volatilomes in terrestrial extreme environments could be used to enhance processes (such as metabolomics and metagenomics) already utilised in life detection beyond Earth. By overcoming some of the complexities of collecting VOCs in remote field sites, a variety of lab based analytical equipment and techniques can then be utilised. Researching volatilomics in astrobiology requires time to characterise the patterns of VOCs. They must then be differentiated from abiotic (non-living) signals within extreme environments similar to those found on other planetary bodies (analogue sites) or in lab-based simulated environments or microcosms. Such an effort is critical for understanding data returned from past or upcoming missions, but it requires a step change in approach which explores the volatilome as a vital additional tool to current 'Omics techniques.
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Affiliation(s)
- Claire A Batty
- The Open University, Walton Hall, Milton Keynes, MK7 6AA, UK.
| | | | | | - Geraint Morgan
- The Open University, Walton Hall, Milton Keynes, MK7 6AA, UK.
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Cassaro A, Pacelli C, Baqué M, Maturilli A, Böttger U, Fujimori A, Moeller R, de Vera JPP, Onofri S. Spectroscopic investigations of fungal biomarkers after exposure to heavy ion irradiation. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 302:123073. [PMID: 37453382 DOI: 10.1016/j.saa.2023.123073] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2023] [Revised: 06/20/2023] [Accepted: 06/21/2023] [Indexed: 07/18/2023]
Abstract
The main objective of the ongoing and future space exploration missions is the search for traces of extant or extinct life (biomarkers) on Mars. One of the main limiting factors on the survival of Earth-like life is the presence of harmful space radiation, that could damage or modify also biomolecules, therefore understanding the effects of radiation on terrestrial biomolecules stability and detectability is of utmost importance. Which terrestrial molecules could be preserved in a Martian radiation scenario? Here, we investigated the potential endurance of fungal biomolecules, by exposing de-hydrated colonies of the Antarctic cryptoendolithic black fungus Cryomyces antarcticus mixed with Antarctic sandstone and with two Martian regolith analogues to increasing doses (0, 250 and 1000 Gy) of accelerated ions, namely iron (Fe), argon (Ar) and helium (He) ions. We analyzed the feasibility to detect fungal compounds with Raman and Infrared spectroscopies after exposure to these space-relevant radiations.
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Affiliation(s)
- A Cassaro
- Department of Ecological and Biological Sciences, University of Tuscia, Largo dell'Università snc, 01100 Viterbo, Italy
| | - C Pacelli
- Department of Ecological and Biological Sciences, University of Tuscia, Largo dell'Università snc, 01100 Viterbo, Italy; Italian Space Agency, Via del Politecnico snc, Rome, Italy.
| | - M Baqué
- German Aerospace Center (DLR), Institute of Planetary Research, Planetary Laboratories Department Berlin, Germany
| | - A Maturilli
- German Aerospace Center (DLR), Institute of Planetary Research, Planetary Laboratories Department Berlin, Germany
| | - U Böttger
- German Aerospace Center (DLR), Institute of Optical Sensor Systems Berlin, Germany
| | - A Fujimori
- Molecular and Cellular Radiation Biology Group, Department of Basic Medical Sciences for Radiation Damages, NIRS/QST, Chiba, Japan
| | - R Moeller
- German Aerospace Center, Institute of Aerospace Medicine, Radiation Biology Department, Space Microbiology Research Group, DLR, Linder Höhe, D-51147 Köln, Germany; University of Applied Sciences Bonn-Rhein-Sieg (BRSU), Natural Sciences, von-Liebig-Straße 20, D-53359 Rheinbach, Germany
| | - J-P P de Vera
- German Aerospace Center (DLR), Space Operations and Astronaut Training, MUSC, Linder Höhe, D-51147 Köln, Germany; University of Potsdam, Institute for Biochemistry and Biology, WG Biodiversity/ Systematic Botany, Maulbeerallee 1, 14469 Potsdam, Germany
| | - S Onofri
- Department of Ecological and Biological Sciences, University of Tuscia, Largo dell'Università snc, 01100 Viterbo, Italy
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Chen Y, Sun Y, Liu L, Shen J, Qu Y, Pan Y, Lin W. Biosignatures Preserved in Carbonate Nodules from the Western Qaidam Basin, NW China: Implications for Life Detection on Mars. ASTROBIOLOGY 2023; 23:172-182. [PMID: 36577041 DOI: 10.1089/ast.2021.0196] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
The search for organic matter on Mars is one of the major objectives of Mars exploration. However, limited detection of organic signals by Mars rovers to date demands further investigation on this topic. The Curiosity rover recently discovered numerous nodules in Gale Crater on Mars. These nodules have been considered to precipitate in the neutral-to-alkaline and saline diagenetic fluids and could be beneficial for organic preservation. Here, we examine this possibility by studying the carbonate nodules in the western Qaidam Basin, NW China, one of the terrestrial analog sites for Mars. Fourier transform infrared spectra of the carbonate nodules reveal that the aliphatic and aromatic molecules can be readily preserved inside nodules in Mars-like environments. The chain-branching index of the Qaidam nodules suggests that the diagenetic fluids where nodules precipitated were able to support diverse microbial communities that could vary with the water salinity. Findings of this study provide new perspectives on the astrobiological significance of nodules in Gale Crater and the further detection of organic matter on Mars.
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Affiliation(s)
- Yan Chen
- Key Laboratory of Earth and Planetary Physics, Institute of Geology and Geophysics, Chinese Academy of Sciences, Beijing, China
| | - Yu Sun
- Key Laboratory of Earth and Planetary Physics, Institute of Geology and Geophysics, Chinese Academy of Sciences, Beijing, China
| | - Li Liu
- Key Laboratory of Earth and Planetary Physics, Institute of Geology and Geophysics, Chinese Academy of Sciences, Beijing, China
- College of Earth and Planetary Sciences, University of Chinese Academy of Sciences, Beijing, China
| | - Jianxun Shen
- Key Laboratory of Earth and Planetary Physics, Institute of Geology and Geophysics, Chinese Academy of Sciences, Beijing, China
| | - Yuangao Qu
- Institute of Deep-Sea Science and Engineering, Chinese Academy of Sciences, Sanya, China
| | - Yongxin Pan
- Key Laboratory of Earth and Planetary Physics, Institute of Geology and Geophysics, Chinese Academy of Sciences, Beijing, China
| | - Wei Lin
- Key Laboratory of Earth and Planetary Physics, Institute of Geology and Geophysics, Chinese Academy of Sciences, Beijing, China
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Preston LJ, Barcenilla R, Dartnell LR, Kucukkilic-Stephens E, Olsson-Francis K. Infrared Spectroscopic Detection of Biosignatures at Lake Tírez, Spain: Implications for Mars. ASTROBIOLOGY 2020; 20:15-25. [PMID: 31592682 PMCID: PMC6987737 DOI: 10.1089/ast.2019.2106] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2019] [Accepted: 08/13/2019] [Indexed: 06/10/2023]
Abstract
The detection of potential biosignatures with mineral matrices is part of a multifaceted approach in the search for life on other planetary bodies. The 2020 ExoMars Rosalind Franklin rover includes within its payload three IR spectrometers in the form of ISEM (Infrared Spectrometer for ExoMars), MicrOmega, and Ma-MISS (Mars Multispectral Imager for Subsurface Studies). The use of this technique in the detection and characterization of biosignatures is of great value. Organic materials are often co-deposited in terrestrial evaporites and as such have been proposed as relevant analogs in the search for life on Mars. This study focuses on Ca-sulfates collected from the hypersaline Tírez Lake in Spain. Mid infrared and visible near infrared analysis of soils, salt crusts, and crystals with green and red layering indicative of microbial colonization of the samples was acquired from across the lake and identified the main mineral to be gypsum with inputs of carbonate and silica. Organic functional groups that could be attributed to amides and carboxylic acids were identified as well as chlorophyll; however, due to the strong mineralogical absorptions observed, these were hard to unambiguously discern. Taxonomical assignment demonstrated that the archaeal community within the samples was dominated by the halophilic extremophile Halobacteriaceae while the bacterial community was dominated by the class Nocardiaceae. The results of this research highlight that sulfates on Mars are a mixed blessing, acting as an effective host for organic matter preservation but also a material that masks the presence of organic functional groups when analyzed with spectroscopic tools similar to those due to fly on the 2020 ExoMars rover. A suite of complementary analytical techniques therefore should be used to support the spectral identification of any candidate extraterrestrial biosignatures.
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Affiliation(s)
- Louisa J. Preston
- Department of Earth and Planetary Sciences, Birkbeck College, University of London, London, UK
| | - Rebeca Barcenilla
- Department of Earth and Planetary Sciences, Birkbeck College, University of London, London, UK
- Department of Life Sciences, University of Westminster, London, UK
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Callefo F, Maldanis L, Teixeira VC, Abans RADO, Monfredini T, Rodrigues F, Galante D. Evaluating Biogenicity on the Geological Record With Synchrotron-Based Techniques. Front Microbiol 2019; 10:2358. [PMID: 31681221 PMCID: PMC6798071 DOI: 10.3389/fmicb.2019.02358] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2018] [Accepted: 09/27/2019] [Indexed: 11/17/2022] Open
Abstract
The biogenicity problem of geological materials is one of the most challenging ones in the field of paleo and astrobiology. As one goes deeper in time, the traces of life become feeble and ambiguous, blending with the surrounding geology. Well-preserved metasedimentary rocks from the Archaean are relatively rare, and in very few cases contain structures resembling biological traces or fossils. These putative biosignatures have been studied for decades and many biogenicity criteria have been developed, but there is still no consensus for many of the proposed structures. Synchrotron-based techniques, especially on new generation sources, have the potential for contributing to this field of research, providing high sensitivity and resolution that can be advantageous for different scientific problems. Exploring the X-ray and matter interactions on a range of geological materials can provide insights on morphology, elemental composition, oxidation states, crystalline structure, magnetic properties, and others, which can measurably contribute to the investigation of biogenicity of putative biosignatures. Here, we provide an overview of selected synchrotron-based techniques that have the potential to be applied in different types of questions on the study of biosignatures preserved in the geological record. The development of 3rd and recently 4th generation synchrotron sources will favor a deeper understanding of the earliest records of life on Earth and also bring up potential analytical approaches to be applied for the search of biosignatures in meteorites and samples returned from Mars in the near future.
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Affiliation(s)
- Flavia Callefo
- Brazilian Synchrotron Light Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, Brazil
| | - Lara Maldanis
- Brazilian Synchrotron Light Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, Brazil
- Institute of Physics of São Carlos, University of São Paulo, São Paulo, Brazil
| | - Verônica C. Teixeira
- Brazilian Synchrotron Light Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, Brazil
| | - Rodrigo Adrián de Oliveira Abans
- Brazilian Synchrotron Light Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, Brazil
- Interunits Graduate Program in Biotechnology, University of São Paulo, São Paulo, Brazil
| | - Thiago Monfredini
- Brazilian Synchrotron Light Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, Brazil
| | - Fabio Rodrigues
- Fundamental Chemistry Department, University of São Paulo, São Paulo, Brazil
| | - Douglas Galante
- Brazilian Synchrotron Light Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, Brazil
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Sephton MA, Waite JH, Brockwell TG. How to Detect Life on Icy Moons. ASTROBIOLOGY 2018; 18:843-855. [PMID: 30035638 PMCID: PMC6067095 DOI: 10.1089/ast.2017.1656] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/01/2017] [Accepted: 12/10/2017] [Indexed: 05/09/2023]
Abstract
The icy moons of the outer Solar System present the possibility of subsurface water, habitable conditions, and potential abodes for life. Access to evidence that reveals the presence of life on the icy moons can be facilitated by plumes that eject material from the subsurface out into space. One instrument capable of performing life-search investigations at the icy moons is the MAss SPectrometer for Planetary EXploration/Europa (MASPEX), which constitutes a high-resolution, high-sensitivity multibounce time-of-flight mass spectrometer capable of measuring trace amounts (ppb) of organic compounds. MASPEX has been selected for the NASA Europa Clipper mission and will sample any plumes and the surface-sputtered atmosphere to assess any evidence for habitability and life. MASPEX is capable of similar investigations targeted at other icy moons. Data may be forthcoming from direct sampling but also impact dissociation because of the high speed of some analytes. Impact dissociation is analogous to the dissociation provided by modern analytical pyrolysis methods. Radiolytic dissociation on the europan surface before or during the sputtering process can also induce fragmentation similar to pyrolysis. In this study, we have compiled pyrolysis mass spectrometry data from a variety of biological and nonbiological materials to demonstrate the ability of MASPEX to recognize habitability and detect life in any plumes and atmospheres of icy moons. Key Words: Europa-Icy moons-Life detection-Mass spectrometry-Organic matter. Astrobiology 18, 843-855.
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Affiliation(s)
- Mark A. Sephton
- Impacts and Astromaterials Research Centre, Department of Earth Science and Engineering, Imperial College London, London, United Kingdom
| | - Jack Hunter Waite
- Space Science and Engineering Division, Southwest Research Institute, San Antonio, Texas
| | - Tim G. Brockwell
- Space Science and Engineering Division, Southwest Research Institute, San Antonio, Texas
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Gordon PR, Sephton MA. A Method for Choosing the Best Samples for Mars Sample Return. ASTROBIOLOGY 2018; 18:556-570. [PMID: 29443541 PMCID: PMC5962928 DOI: 10.1089/ast.2017.1744] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/16/2017] [Accepted: 11/29/2017] [Indexed: 06/08/2023]
Abstract
Success of a future Mars Sample Return mission will depend on the correct choice of samples. Pyrolysis-FTIR can be employed as a triage instrument for Mars Sample Return. The technique can thermally dissociate minerals and organic matter for detection. Identification of certain mineral types can determine the habitability of the depositional environment, past or present, while detection of organic matter may suggest past or present habitation. In Mars' history, the Theiikian era represents an attractive target for life search missions and the acquisition of samples. The acidic and increasingly dry Theiikian may have been habitable and followed a lengthy neutral and wet period in Mars' history during which life could have originated and proliferated to achieve relatively abundant levels of biomass with a wide distribution. Moreover, the sulfate minerals produced in the Theiikian are also known to be good preservers of organic matter. We have used pyrolysis-FTIR and samples from a Mars analog ferrous acid stream with a thriving ecosystem to test the triage concept. Pyrolysis-FTIR identified those samples with the greatest probability of habitability and habitation. A three-tier scoring system was developed based on the detection of (i) organic signals, (ii) carbon dioxide and water, and (iii) sulfur dioxide. The presence of each component was given a score of A, B, or C depending on whether the substance had been detected, tentatively detected, or not detected, respectively. Single-step (for greatest possible sensitivity) or multistep (for more diagnostic data) pyrolysis-FTIR methods informed the assignments. The system allowed the highest-priority samples to be categorized as AAA (or A*AA if the organic signal was complex), while the lowest-priority samples could be categorized as CCC. Our methods provide a mechanism with which to rank samples and identify those that should take the highest priority for return to Earth during a Mars Sample Return mission. Key Words: Mars-Astrobiology-Search for Mars' organics-Infrared spectroscopy-Planetary habitability and biosignatures. Astrobiology 18, 556-570.
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Affiliation(s)
- Peter R Gordon
- Impacts and Astromaterials Research Centre, Department of Earth Science and Engineering, Imperial College London , UK
| | - Mark A Sephton
- Impacts and Astromaterials Research Centre, Department of Earth Science and Engineering, Imperial College London , UK
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Fairén AG, Parro V, Schulze-Makuch D, Whyte L. Is Searching for Martian Life a Priority for the Mars Community? ASTROBIOLOGY 2018; 18:101-107. [PMID: 29359967 PMCID: PMC5820680 DOI: 10.1089/ast.2017.1772] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2017] [Accepted: 11/02/2017] [Indexed: 06/07/2023]
Affiliation(s)
- Alberto G. Fairén
- Centro de Astrobiología (CSIC-INTA), Madrid, Spain
- Department of Astronomy, Cornell University, Ithaca, New York, USA
| | - Victor Parro
- Centro de Astrobiología (CSIC-INTA), Madrid, Spain
| | - Dirk Schulze-Makuch
- Center of Astronomy and Astrophysics, Technical University Berlin, Berlin, Germany
- School of the Environment, Washington State University, Pullman, Washington, USA
| | - Lyle Whyte
- Department of Natural Resource Sciences, McGill University, Ste-Anne-de-Bellevue, Canada
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Rummel JD, Conley CA. Inadvertently Finding Earth Contamination on Mars Should Not Be a Priority for Anyone. ASTROBIOLOGY 2018; 18:108-115. [PMID: 29451824 DOI: 10.1089/ast.2017.1785] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
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Olsson-Francis K, Ramkissoon NK, Price AB, Slade DJ, Macey MC, Pearson VK. The Study of Microbial Survival in Extraterrestrial Environments Using Low Earth Orbit and Ground-Based Experiments. J Microbiol Methods 2018. [DOI: 10.1016/bs.mim.2018.07.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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