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For: Bab-Dinitz E, Shmuely H, Maupin-Furlow J, Eichler J, Shaanan B. Haloferax volcanii PitA: an example of functional interaction between the Pfam chlorite dismutase and antibiotic biosynthesis monooxygenase families? Bioinformatics 2006;22:671-5. [PMID: 16403788 DOI: 10.1093/bioinformatics/btk043] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
Number Cited by Other Article(s)
1
Jia H, Dantuluri S, Margulies S, Smith V, Lever R, Allers T, Koh J, Chen S, Maupin-Furlow JA. RecJ3/4-aRNase J form a Ubl-associated nuclease complex functioning in survival against DNA damage in Haloferax volcanii. mBio 2023;14:e0085223. [PMID: 37458473 PMCID: PMC10470531 DOI: 10.1128/mbio.00852-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2023] [Accepted: 06/02/2023] [Indexed: 09/02/2023]  Open
2
Prado LCDS, Giacchetto Felice A, Rodrigues TCV, Tiwari S, Andrade BS, Kato RB, Oliveira CJF, Silva MV, Barh D, Azevedo VADC, Jaiswal AK, Soares SDC. New putative therapeutic targets against Serratia marcescens using reverse vaccinology and subtractive genomics. J Biomol Struct Dyn 2022;40:10106-10121. [PMID: 34192477 DOI: 10.1080/07391102.2021.1942211] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
3
Jia H, Couto-Rodriguez RL, Gal D, Mondragon P, Wassel PC, Yu D, Maupin-Furlow JA. Expression and tandem affinity purification of 20S proteasomes and other multisubunit complexes in Haloferax volcanii. Methods Enzymol 2021;659:315-326. [PMID: 34752292 DOI: 10.1016/bs.mie.2021.08.002] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
4
Oxygen Generation via Water Splitting by a Novel Biogenic Metal Ion-Binding Compound. Appl Environ Microbiol 2021;87:e0028621. [PMID: 33962982 PMCID: PMC8231713 DOI: 10.1128/aem.00286-21] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]  Open
5
Haque RU, Paradisi F, Allers T. Haloferax volcanii for biotechnology applications: challenges, current state and perspectives. Appl Microbiol Biotechnol 2019;104:1371-1382. [PMID: 31863144 PMCID: PMC6985049 DOI: 10.1007/s00253-019-10314-2] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2019] [Revised: 12/05/2019] [Accepted: 12/10/2019] [Indexed: 01/08/2023]
6
The 3-D structure of VNG0258H/RosR - A haloarchaeal DNA-binding protein in its ionic shell. J Struct Biol 2018;204:191-198. [PMID: 30110657 DOI: 10.1016/j.jsb.2018.08.008] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2018] [Revised: 08/05/2018] [Accepted: 08/09/2018] [Indexed: 11/21/2022]
7
Méheust R, Watson AK, Lapointe FJ, Papke RT, Lopez P, Bapteste E. Hundreds of novel composite genes and chimeric genes with bacterial origins contributed to haloarchaeal evolution. Genome Biol 2018;19:75. [PMID: 29880023 PMCID: PMC5992828 DOI: 10.1186/s13059-018-1454-9] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2017] [Accepted: 05/16/2018] [Indexed: 01/03/2023]  Open
8
Kosugi N, Araki T, Fujita J, Tanaka S, Fujiwara T. Growth phenotype analysis of heme synthetic enzymes in a halophilic archaeon, Haloferax volcanii. PLoS One 2017;12:e0189913. [PMID: 29284023 PMCID: PMC5746218 DOI: 10.1371/journal.pone.0189913] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2017] [Accepted: 12/05/2017] [Indexed: 01/09/2023]  Open
9
Elharar Y, Podilapu AR, Guan Z, Kulkarni SS, Eichler J. Assembling Glycan-Charged Dolichol Phosphates: Chemoenzymatic Synthesis of a Haloferax volcanii N-Glycosylation Pathway Intermediate. Bioconjug Chem 2017;28:2461-2470. [PMID: 28809486 DOI: 10.1021/acs.bioconjchem.7b00436] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
10
Hofbauer S, Hagmüller A, Schaffner I, Mlynek G, Krutzler M, Stadlmayr G, Pirker KF, Obinger C, Daims H, Djinović-Carugo K, Furtmüller PG. Structure and heme-binding properties of HemQ (chlorite dismutase-like protein) from Listeria monocytogenes. Arch Biochem Biophys 2015;574:36-48. [PMID: 25602700 PMCID: PMC4420033 DOI: 10.1016/j.abb.2015.01.010] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2014] [Revised: 01/07/2015] [Accepted: 01/09/2015] [Indexed: 11/17/2022]
11
Dailey HA, Gerdes S. HemQ: An iron-coproporphyrin oxidative decarboxylase for protoheme synthesis in Firmicutes and Actinobacteria. Arch Biochem Biophys 2015;574:27-35. [PMID: 25711532 DOI: 10.1016/j.abb.2015.02.017] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2015] [Revised: 02/11/2015] [Accepted: 02/12/2015] [Indexed: 02/05/2023]
12
Martínez-Espinosa RM, Richardson DJ, Bonete MJ. Characterisation of chlorate reduction in the haloarchaeon Haloferax mediterranei. Biochim Biophys Acta Gen Subj 2014;1850:587-94. [PMID: 25512066 DOI: 10.1016/j.bbagen.2014.12.011] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2014] [Revised: 12/06/2014] [Accepted: 12/08/2014] [Indexed: 11/25/2022]
13
Maia LB, Moura JJG. How Biology Handles Nitrite. Chem Rev 2014;114:5273-357. [DOI: 10.1021/cr400518y] [Citation(s) in RCA: 191] [Impact Index Per Article: 17.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
14
Hofbauer S, Schaffner I, Furtmüller PG, Obinger C. Chlorite dismutases - a heme enzyme family for use in bioremediation and generation of molecular oxygen. Biotechnol J 2014;9:461-73. [PMID: 24519858 PMCID: PMC4162996 DOI: 10.1002/biot.201300210] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2013] [Revised: 12/06/2013] [Accepted: 01/14/2014] [Indexed: 11/09/2022]
15
Mayfield JA, Hammer ND, Kurker RC, Chen TK, Ojha S, Skaar EP, DuBois JL. The chlorite dismutase (HemQ) from Staphylococcus aureus has a redox-sensitive heme and is associated with the small colony variant phenotype. J Biol Chem 2013;288:23488-504. [PMID: 23737523 PMCID: PMC5395028 DOI: 10.1074/jbc.m112.442335] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2012] [Revised: 05/23/2013] [Indexed: 01/17/2023]  Open
16
Tavlaridou S, Faist K, Weitzel K, Pfeifer F. Effect of an overproduction of accessory Gvp proteins on gas vesicle formation in Haloferax volcanii. Extremophiles 2013;17:277-87. [PMID: 23338749 DOI: 10.1007/s00792-013-0515-y] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2012] [Accepted: 01/04/2013] [Indexed: 11/29/2022]
17
Promponas VJ, Ouzounis CA, Iliopoulos I. Experimental evidence validating the computational inference of functional associations from gene fusion events: a critical survey. Brief Bioinform 2012;15:443-54. [PMID: 23220349 PMCID: PMC4017328 DOI: 10.1093/bib/bbs072] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]  Open
18
Ettwig KF, Speth DR, Reimann J, Wu ML, Jetten MSM, Keltjens JT. Bacterial oxygen production in the dark. Front Microbiol 2012;3:273. [PMID: 22891064 PMCID: PMC3413370 DOI: 10.3389/fmicb.2012.00273] [Citation(s) in RCA: 86] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2012] [Accepted: 07/10/2012] [Indexed: 11/13/2022]  Open
19
Bleiholder A, Frommherz R, Teufel K, Pfeifer F. Expression of multiple tfb genes in different Halobacterium salinarum strains and interaction of TFB with transcriptional activator GvpE. Arch Microbiol 2011;194:269-79. [PMID: 21969032 DOI: 10.1007/s00203-011-0756-z] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2011] [Revised: 08/19/2011] [Accepted: 09/10/2011] [Indexed: 01/19/2023]
20
Goblirsch B, Kurker RC, Streit BR, Wilmot CM, DuBois JL. Chlorite dismutases, DyPs, and EfeB: 3 microbial heme enzyme families comprise the CDE structural superfamily. J Mol Biol 2011;408:379-98. [PMID: 21354424 PMCID: PMC3075325 DOI: 10.1016/j.jmb.2011.02.047] [Citation(s) in RCA: 67] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2011] [Revised: 02/15/2011] [Accepted: 02/16/2011] [Indexed: 11/28/2022]
21
Bardiya N, Bae JH. Dissimilatory perchlorate reduction: a review. Microbiol Res 2011;166:237-54. [PMID: 21242067 DOI: 10.1016/j.micres.2010.11.005] [Citation(s) in RCA: 120] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2010] [Revised: 11/23/2010] [Accepted: 11/27/2010] [Indexed: 10/18/2022]
22
Towards a systems approach in the genetic analysis of archaea: Accelerating mutant construction and phenotypic analysis in Haloferax volcanii. ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL 2010;2010:426239. [PMID: 21234384 PMCID: PMC3017900 DOI: 10.1155/2010/426239] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/02/2010] [Accepted: 10/24/2010] [Indexed: 01/17/2023]
23
Allers T. Overexpression and purification of halophilic proteins in Haloferax volcanii. Bioeng Bugs 2010;1:288-90. [PMID: 21327063 DOI: 10.4161/bbug.1.4.11794] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2010] [Accepted: 03/17/2010] [Indexed: 11/19/2022]  Open
24
Ettwig KF, Butler MK, Le Paslier D, Pelletier E, Mangenot S, Kuypers MMM, Schreiber F, Dutilh BE, Zedelius J, de Beer D, Gloerich J, Wessels HJCT, van Alen T, Luesken F, Wu ML, van de Pas-Schoonen KT, Op den Camp HJM, Janssen-Megens EM, Francoijs KJ, Stunnenberg H, Weissenbach J, Jetten MSM, Strous M. Nitrite-driven anaerobic methane oxidation by oxygenic bacteria. Nature 2010;464:543-8. [DOI: 10.1038/nature08883] [Citation(s) in RCA: 1222] [Impact Index Per Article: 81.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2009] [Accepted: 02/05/2010] [Indexed: 11/09/2022]
25
Improved strains and plasmid vectors for conditional overexpression of His-tagged proteins in Haloferax volcanii. Appl Environ Microbiol 2010;76:1759-69. [PMID: 20097827 DOI: 10.1128/aem.02670-09] [Citation(s) in RCA: 163] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
26
The N-terminal penultimate residue of 20S proteasome alpha1 influences its N(alpha) acetylation and protein levels as well as growth rate and stress responses of Haloferax volcanii. J Bacteriol 2009;191:3794-803. [PMID: 19376868 DOI: 10.1128/jb.00090-09] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
27
Maixner F, Wagner M, Lücker S, Pelletier E, Schmitz-Esser S, Hace K, Spieck E, Konrat R, Le Paslier D, Daims H. Environmental genomics reveals a functional chlorite dismutase in the nitrite-oxidizing bacterium ‘CandidatusNitrospira defluvii’. Environ Microbiol 2008;10:3043-56. [DOI: 10.1111/j.1462-2920.2008.01646.x] [Citation(s) in RCA: 86] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
28
Regulation of gvp genes encoding gas vesicle proteins in halophilic Archaea. Arch Microbiol 2008;190:333-9. [PMID: 18385982 DOI: 10.1007/s00203-008-0362-x] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2008] [Revised: 02/27/2008] [Accepted: 03/06/2008] [Indexed: 10/22/2022]
29
Bonamore A, Attili A, Arenghi F, Catacchio B, Chiancone E, Morea V, Boffi A. A novel chimera: the "truncated hemoglobin-antibiotic monooxygenase" from Streptomyces avermitilis. Gene 2007;398:52-61. [PMID: 17574781 DOI: 10.1016/j.gene.2007.01.038] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2006] [Revised: 01/24/2007] [Accepted: 01/30/2007] [Indexed: 10/23/2022]
30
Humbard MA, Stevens SM, Maupin-Furlow JA. Posttranslational modification of the 20S proteasomal proteins of the archaeon Haloferax volcanii. J Bacteriol 2006;188:7521-30. [PMID: 16950923 PMCID: PMC1636277 DOI: 10.1128/jb.00943-06] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
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