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For: Davies MN, Secker A, Freitas AA, Mendao M, Timmis J, Flower DR. On the hierarchical classification of G protein-coupled receptors. Bioinformatics 2007;23:3113-8. [PMID: 17956878 DOI: 10.1093/bioinformatics/btm506] [Citation(s) in RCA: 65] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]  Open
Number Cited by Other Article(s)
1
Ahn S, Kaipparettu BA. G-protein coupled receptors in metabolic reprogramming and cancer. Pharmacol Ther 2025;270:108849. [PMID: 40204142 DOI: 10.1016/j.pharmthera.2025.108849] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2024] [Revised: 02/09/2025] [Accepted: 03/24/2025] [Indexed: 04/11/2025]
2
Kabir MN, Wang LR, Goh WWB. Exploiting the similarity of dissimilarities for biomedical applications and enhanced machine learning. PLoS Comput Biol 2025;21:e1012716. [PMID: 39854337 PMCID: PMC11759369 DOI: 10.1371/journal.pcbi.1012716] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2025]  Open
3
Kim DH, Kim MS, Lee JS, Yoon DS, Lee JS. Genome-wide identification of 769 G protein-coupled receptor (GPCR) genes from the marine medaka Oryzias melastigma. MARINE POLLUTION BULLETIN 2024;207:116868. [PMID: 39173477 DOI: 10.1016/j.marpolbul.2024.116868] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2024] [Revised: 08/14/2024] [Accepted: 08/15/2024] [Indexed: 08/24/2024]
4
Baumann C, Zerbe O. The role of leucine and isoleucine in tuning the hydropathy of class A GPCRs. Proteins 2024;92:15-23. [PMID: 37497770 DOI: 10.1002/prot.26559] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2023] [Revised: 06/19/2023] [Accepted: 07/11/2023] [Indexed: 07/28/2023]
5
Jaster AM, González-Maeso J. Mechanisms and molecular targets surrounding the potential therapeutic effects of psychedelics. Mol Psychiatry 2023;28:3595-3612. [PMID: 37759040 DOI: 10.1038/s41380-023-02274-x] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/30/2023] [Accepted: 09/13/2023] [Indexed: 09/29/2023]
6
To Affinity and Beyond: A Personal Reflection on the Design and Discovery of Drugs. Molecules 2022;27:molecules27217624. [DOI: 10.3390/molecules27217624] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2022] [Revised: 10/19/2022] [Accepted: 10/21/2022] [Indexed: 11/09/2022]  Open
7
Kabir MN, Wong L. EnsembleFam: towards more accurate protein family prediction in the twilight zone. BMC Bioinformatics 2022;23:90. [PMID: 35287576 PMCID: PMC8919565 DOI: 10.1186/s12859-022-04626-w] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2021] [Accepted: 03/02/2022] [Indexed: 11/30/2022]  Open
8
Fan Y, Lu X, Zhao J, Fu H, Liu Y. Estimating individualized treatment rules for treatments with hierarchical structure. Electron J Stat 2022. [DOI: 10.1214/21-ejs1948] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
9
Velloso JPL, Ascher DB, Pires DEV. pdCSM-GPCR: predicting potent GPCR ligands with graph-based signatures. BIOINFORMATICS ADVANCES 2021;1:vbab031. [PMID: 34901870 PMCID: PMC8651072 DOI: 10.1093/bioadv/vbab031] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/27/2021] [Revised: 09/30/2021] [Accepted: 11/02/2021] [Indexed: 01/26/2023]
10
Sandaruwan PD, Wannige CT. An improved deep learning model for hierarchical classification of protein families. PLoS One 2021;16:e0258625. [PMID: 34669708 PMCID: PMC8528337 DOI: 10.1371/journal.pone.0258625] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2020] [Accepted: 10/01/2021] [Indexed: 12/28/2022]  Open
11
Ling C, Wei X, Shen Y, Zhang H. Development and validation of multiple machine learning algorithms for the classification of G-protein-coupled receptors using molecular evolution model-based feature extraction strategy. Amino Acids 2021;53:1705-1714. [PMID: 34562175 DOI: 10.1007/s00726-021-03080-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2021] [Accepted: 09/13/2021] [Indexed: 11/25/2022]
12
Akon M, Akon M, Kabir M, Rahman MS, Rahman MS. ADACT: a tool for analysing (dis)similarity among nucleotide and protein sequences using minimal and relative absent words. Bioinformatics 2021;37:1468-1470. [PMID: 33016997 DOI: 10.1093/bioinformatics/btaa853] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2019] [Revised: 09/09/2020] [Accepted: 09/21/2020] [Indexed: 11/14/2022]  Open
13
Solís KH, Romero-Ávila MT, Guzmán-Silva A, García-Sáinz JA. The LPA3 Receptor: Regulation and Activation of Signaling Pathways. Int J Mol Sci 2021;22:ijms22136704. [PMID: 34201414 PMCID: PMC8269014 DOI: 10.3390/ijms22136704] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2021] [Revised: 06/08/2021] [Accepted: 06/12/2021] [Indexed: 12/17/2022]  Open
14
Lee T, Lee S, Kang M, Kim S. Deep hierarchical embedding for simultaneous modeling of GPCR proteins in a unified metric space. Sci Rep 2021;11:9543. [PMID: 33953216 PMCID: PMC8100104 DOI: 10.1038/s41598-021-88623-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2021] [Accepted: 04/13/2021] [Indexed: 11/23/2022]  Open
15
Lengger B, Jensen MK. Engineering G protein-coupled receptor signalling in yeast for biotechnological and medical purposes. FEMS Yeast Res 2021;20:5673487. [PMID: 31825496 PMCID: PMC6977407 DOI: 10.1093/femsyr/foz087] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2019] [Accepted: 12/09/2019] [Indexed: 12/13/2022]  Open
16
Du N, Shang J, Sun Y. Improving protein domain classification for third-generation sequencing reads using deep learning. BMC Genomics 2021;22:251. [PMID: 33836667 PMCID: PMC8033682 DOI: 10.1186/s12864-021-07468-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2020] [Accepted: 02/19/2021] [Indexed: 12/21/2022]  Open
17
Yusuf SM, Zhang F, Zeng M, Li M. DeepPPF: A deep learning framework for predicting protein family. Neurocomputing 2021. [DOI: 10.1016/j.neucom.2020.11.062] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
18
Khelifa MS, Skov LJ, Holst B. Biased Ghrelin Receptor Signaling and the Dopaminergic System as Potential Targets for Metabolic and Psychological Symptoms of Anorexia Nervosa. Front Endocrinol (Lausanne) 2021;12:734547. [PMID: 34646236 PMCID: PMC8503187 DOI: 10.3389/fendo.2021.734547] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/01/2021] [Accepted: 08/16/2021] [Indexed: 12/15/2022]  Open
19
Paki R, Nourani E, Farajzadeh D. Classification of G protein-coupled receptors using attention mechanism. GENE REPORTS 2020. [DOI: 10.1016/j.genrep.2020.100882] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
20
Odoemelam CS, Percival B, Wallis H, Chang MW, Ahmad Z, Scholey D, Burton E, Williams IH, Kamerlin CL, Wilson PB. G-Protein coupled receptors: structure and function in drug discovery. RSC Adv 2020;10:36337-36348. [PMID: 35517958 PMCID: PMC9057076 DOI: 10.1039/d0ra08003a] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2020] [Accepted: 09/22/2020] [Indexed: 12/13/2022]  Open
21
Fan Y, Lu X, Liu Y, Zhao J. Angle-Based Hierarchical Classification Using Exact Label Embedding. J Am Stat Assoc 2020. [DOI: 10.1080/01621459.2020.1801450] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
22
Seo S, Oh M, Park Y, Kim S. DeepFam: deep learning based alignment-free method for protein family modeling and prediction. Bioinformatics 2019;34:i254-i262. [PMID: 29949966 PMCID: PMC6022622 DOI: 10.1093/bioinformatics/bty275] [Citation(s) in RCA: 77] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]  Open
23
Li Y, Wang S, Umarov R, Xie B, Fan M, Li L, Gao X. DEEPre: sequence-based enzyme EC number prediction by deep learning. Bioinformatics 2018;34:760-769. [PMID: 29069344 PMCID: PMC6030869 DOI: 10.1093/bioinformatics/btx680] [Citation(s) in RCA: 135] [Impact Index Per Article: 19.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2017] [Accepted: 10/20/2017] [Indexed: 11/15/2022]  Open
24
GPCR-SAS: A web application for statistical analyses on G protein-coupled receptors sequences. PLoS One 2018;13:e0199843. [PMID: 30044824 PMCID: PMC6059404 DOI: 10.1371/journal.pone.0199843] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2018] [Accepted: 06/14/2018] [Indexed: 11/19/2022]  Open
25
Yu B, Lou L, Li S, Zhang Y, Qiu W, Wu X, Wang M, Tian B. Prediction of protein structural class for low-similarity sequences using Chou’s pseudo amino acid composition and wavelet denoising. J Mol Graph Model 2017;76:260-273. [DOI: 10.1016/j.jmgm.2017.07.012] [Citation(s) in RCA: 60] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2017] [Revised: 07/11/2017] [Accepted: 07/12/2017] [Indexed: 11/25/2022]
26
Cao L, Graauw MD, Yan K, Winkel L, Verbeek FJ. Hierarchical classification strategy for Phenotype extraction from epidermal growth factor receptor endocytosis screening. BMC Bioinformatics 2016;17:196. [PMID: 27142862 PMCID: PMC4855371 DOI: 10.1186/s12859-016-1053-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2015] [Accepted: 04/13/2016] [Indexed: 11/29/2022]  Open
27
Shalaeva DN, Galperin MY, Mulkidjanian AY. Eukaryotic G protein-coupled receptors as descendants of prokaryotic sodium-translocating rhodopsins. Biol Direct 2015;10:63. [PMID: 26472483 PMCID: PMC4608122 DOI: 10.1186/s13062-015-0091-4] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2015] [Accepted: 10/12/2015] [Indexed: 12/20/2022]  Open
28
Helix 8 of the angiotensin- II type 1A receptor interacts with phosphatidylinositol phosphates and modulates membrane insertion. Sci Rep 2015;5:9972. [PMID: 26126083 PMCID: PMC5378882 DOI: 10.1038/srep09972] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2015] [Accepted: 03/26/2015] [Indexed: 11/16/2022]  Open
29
Mani A, Ravindran R, Mannepalli S, Vang D, Luciw PA, Hogarth M, Khan IH, Krishnan VV. Data mining strategies to improve multiplex microbead immunoassay tolerance in a mouse model of infectious diseases. PLoS One 2015;10:e0116262. [PMID: 25614982 PMCID: PMC4304816 DOI: 10.1371/journal.pone.0116262] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2014] [Accepted: 12/04/2014] [Indexed: 11/25/2022]  Open
30
Cruz-Barbosa R, Vellido A, Giraldo J. The influence of alignment-free sequence representations on the semi-supervised classification of class C G protein-coupled receptors: semi-supervised classification of class C GPCRs. Med Biol Eng Comput 2014;53:137-49. [PMID: 25367737 DOI: 10.1007/s11517-014-1218-y] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2013] [Accepted: 10/20/2014] [Indexed: 11/29/2022]
31
Sahin ME, Can T, Son CD. GPCRsort-responding to the next generation sequencing data challenge: prediction of G protein-coupled receptor classes using only structural region lengths. OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY 2014;18:636-44. [PMID: 25133496 DOI: 10.1089/omi.2014.0073] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
32
Nantasenamat C, Simeon S, Owasirikul W, Songtawee N, Lapins M, Prachayasittikul V, Wikberg JES. Illuminating the origins of spectral properties of green fluorescent proteins via proteochemometric and molecular modeling. J Comput Chem 2014;35:1951-66. [DOI: 10.1002/jcc.23708] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2014] [Revised: 04/28/2014] [Accepted: 07/28/2014] [Indexed: 01/06/2023]
33
Bioinformatics tools for predicting GPCR gene functions. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2014;796:205-24. [PMID: 24158807 DOI: 10.1007/978-94-007-7423-0_10] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/12/2023]
34
Gao QB, Ye XF, He J. Classifying G-protein-coupled receptors to the finest subtype level. Biochem Biophys Res Commun 2013;439:303-8. [DOI: 10.1016/j.bbrc.2013.08.023] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2013] [Accepted: 08/08/2013] [Indexed: 11/17/2022]
35
Ghanemi A. Targeting G protein coupled receptor-related pathways as emerging molecular therapies. Saudi Pharm J 2013;23:115-29. [PMID: 25972730 PMCID: PMC4420995 DOI: 10.1016/j.jsps.2013.07.007] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2013] [Accepted: 07/29/2013] [Indexed: 12/20/2022]  Open
36
Flower DR, Perrie Y. Identification of Candidate Vaccine Antigens In Silico. IMMUNOMIC DISCOVERY OF ADJUVANTS AND CANDIDATE SUBUNIT VACCINES 2013. [PMCID: PMC7120937 DOI: 10.1007/978-1-4614-5070-2_3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
37
Cobanoglu MC, Saygin Y, Sezerman U. Classification of GPCRs using family specific motifs. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2011;8:1495-1508. [PMID: 20876934 DOI: 10.1109/tcbb.2010.101] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
38
ur-Rehman Z, Khan A. G-protein-coupled receptor prediction using pseudo-amino-acid composition and multiscale energy representation of different physiochemical properties. Anal Biochem 2011;412:173-82. [DOI: 10.1016/j.ab.2011.01.040] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2010] [Revised: 01/26/2011] [Accepted: 01/27/2011] [Indexed: 11/28/2022]
39
Naveed M, Khan AU. GPCR-MPredictor: multi-level prediction of G protein-coupled receptors using genetic ensemble. Amino Acids 2011;42:1809-23. [DOI: 10.1007/s00726-011-0902-6] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2010] [Accepted: 03/26/2011] [Indexed: 11/27/2022]
40
Berger C, Montag C, Berndt S, Huster D. Optimization of Escherichia coli cultivation methods for high yield neuropeptide Y receptor type 2 production. Protein Expr Purif 2011;76:25-35. [DOI: 10.1016/j.pep.2010.10.012] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2010] [Revised: 10/20/2010] [Accepted: 10/27/2010] [Indexed: 12/11/2022]
41
Sarkar A, Kumar S, Sundar D. The G protein-coupled receptors in the pufferfish Takifugu rubripes. BMC Bioinformatics 2011;12 Suppl 1:S3. [PMID: 21342560 PMCID: PMC3044285 DOI: 10.1186/1471-2105-12-s1-s3] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]  Open
42
Donnellan PD, Kimbembe CC, Reid HM, Kinsella BT. Identification of a novel endoplasmic reticulum export motif within the eighth α-helical domain (α-H8) of the human prostacyclin receptor. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2011;1808:1202-18. [PMID: 21223948 DOI: 10.1016/j.bbamem.2011.01.003] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2010] [Revised: 12/20/2010] [Accepted: 01/03/2011] [Indexed: 01/20/2023]
43
Atwood BK, Lopez J, Wager-Miller J, Mackie K, Straiker A. Expression of G protein-coupled receptors and related proteins in HEK293, AtT20, BV2, and N18 cell lines as revealed by microarray analysis. BMC Genomics 2011;12:14. [PMID: 21214938 PMCID: PMC3024950 DOI: 10.1186/1471-2164-12-14] [Citation(s) in RCA: 322] [Impact Index Per Article: 23.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2010] [Accepted: 01/07/2011] [Indexed: 12/16/2022]  Open
44
Schaadt NS, Christoph J, Helms V. Classifying Substrate Specificities of Membrane Transporters from Arabidopsis thaliana. J Chem Inf Model 2010;50:1899-905. [DOI: 10.1021/ci100243m] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
45
Peng ZL, Yang JY, Chen X. An improved classification of G-protein-coupled receptors using sequence-derived features. BMC Bioinformatics 2010;11:420. [PMID: 20696050 PMCID: PMC3247138 DOI: 10.1186/1471-2105-11-420] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2010] [Accepted: 08/09/2010] [Indexed: 11/10/2022]  Open
46
Li Z, Zhou X, Dai Z, Zou X. Classification of G-protein coupled receptors based on support vector machine with maximum relevance minimum redundancy and genetic algorithm. BMC Bioinformatics 2010;11:325. [PMID: 20550715 PMCID: PMC2905366 DOI: 10.1186/1471-2105-11-325] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2009] [Accepted: 06/16/2010] [Indexed: 11/25/2022]  Open
47
Identification of protein functions using a machine-learning approach based on sequence-derived properties. Proteome Sci 2009;7:27. [PMID: 19664241 PMCID: PMC2731080 DOI: 10.1186/1477-5956-7-27] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2009] [Accepted: 08/09/2009] [Indexed: 02/07/2023]  Open
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Huynh J, Thomas WG, Aguilar MI, Pattenden LK. Role of helix 8 in G protein-coupled receptors based on structure-function studies on the type 1 angiotensin receptor. Mol Cell Endocrinol 2009;302:118-27. [PMID: 19418628 DOI: 10.1016/j.mce.2009.01.002] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Davies MN, Secker A, Halling-Brown M, Moss DS, Freitas AA, Timmis J, Clark E, Flower DR. GPCRTree: online hierarchical classification of GPCR function. BMC Res Notes 2008;1:67. [PMID: 18717986 PMCID: PMC2547103 DOI: 10.1186/1756-0500-1-67] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2008] [Accepted: 08/21/2008] [Indexed: 11/25/2022]  Open
50
Optimizing amino acid groupings for GPCR classification. Bioinformatics 2008;24:1980-6. [DOI: 10.1093/bioinformatics/btn382] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
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