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de Buron I, Hill-Spanik KM, Atkinson SD, Vanhove MPM, Kmentová N, Georgieva S, Díaz-Morales DM, Kendrick MR, Roumillat WA, Rothman GK. ParasiteBlitz: Adaptation of the BioBlitz concept to parasitology. J Helminthol 2025; 99:e39. [PMID: 40045709 DOI: 10.1017/s0022149x25000197] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/13/2025]
Abstract
A BioBlitz is a rapid and intensive survey of a specific geographic area that brings together experts and often lay participants to assess biodiversity, typically of macrobiota that are easily observed and identifiable on-site. This concept has become popular across taxonomic fields, attracting interest globally to increase knowledge of local biodiversity. Inspired by the success of the approach, we undertook a 'ParasiteBlitz' at an unexplored locality (Stono Preserve, Charleston, South Carolina, USA) to determine its feasibility for parasites, whose assessment of diversity is largely neglected worldwide. We assembled a team of parasitologists with complementary expertise. Over 12 days (3 days in each habitat) in April 2023, we intensively screened fishes and aquatic invertebrates for parasites, and sampled sediment and water for environmental DNA (eDNA) metabarcoding from four aquatic habitats: wetland, freshwater pond, brackish impoundment, and tidal creek. We incorporated assistance from non-parasitologists and students. Details on methodologies and results are provided in individual papers in this Special Collection. Traditional methods revealed the presence of ca. 100 species of seven major metazoan parasite taxa, and the eDNA survey yielded over 1,000 amplicon sequence variants identified as parasites, most with sequences unmatched in GenBank, and resulting in only a few species identified as named species in the one-year post-Blitz timeframe we imposed upon ourselves for identification. Limitations and challenges of the ParasiteBlitz are discussed, and our results support that this approach can be effective for rapid discovery of the dimensions of parasite assemblages in an understudied environment and contribute to parasitology knowledge.
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Affiliation(s)
- I de Buron
- Department of Biology, College of Charleston, Charleston, South Carolina, USA
| | - K M Hill-Spanik
- Department of Biology, College of Charleston, Charleston, South Carolina, USA
| | - S D Atkinson
- Oregon State University, Department of Microbiology, Corvallis, Oregon, USA
| | - M P M Vanhove
- Research Group Zoology: Biodiversity and Toxicology, Faculty of Sciences, Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium
| | - N Kmentová
- Research Group Zoology: Biodiversity and Toxicology, Faculty of Sciences, Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium
- Freshwater Biology, Operational Directorate Natural Environment, Royal Belgian Institute of Natural Sciences, Brussels, Belgium
| | - S Georgieva
- Institute of Biodiversity and Ecosystem Research, Bulgarian Academy of Sciences, Sofia, Bulgaria
| | - D M Díaz-Morales
- University of Duisburg-Essen and Centre for Water and Environmental Research, Essen, Germany; Current address: University of Washington, School of Aquatic and Fishery Sciences, Seattle, Washington, USA
| | - M R Kendrick
- South Carolina Department of Natural Resources, Marine Resources Research Institute, Charleston, South Carolina, USA
| | - W A Roumillat
- Department of Biology, College of Charleston, Charleston, South Carolina, USA
| | - G K Rothman
- Department of Biology, College of Charleston, Charleston, South Carolina, USA
- South Carolina Department of Natural Resources, Marine Resources Research Institute, Charleston, South Carolina, USA
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2
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Sheard JK, Adriaens T, Bowler DE, Büermann A, Callaghan CT, Camprasse ECM, Chowdhury S, Engel T, Finch EA, von Gönner J, Hsing PY, Mikula P, Rachel Oh RY, Peters B, Phartyal SS, Pocock MJO, Wäldchen J, Bonn A. Emerging technologies in citizen science and potential for insect monitoring. Philos Trans R Soc Lond B Biol Sci 2024; 379:20230106. [PMID: 38705194 PMCID: PMC11070260 DOI: 10.1098/rstb.2023.0106] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2023] [Accepted: 03/29/2024] [Indexed: 05/07/2024] Open
Abstract
Emerging technologies are increasingly employed in environmental citizen science projects. This integration offers benefits and opportunities for scientists and participants alike. Citizen science can support large-scale, long-term monitoring of species occurrences, behaviour and interactions. At the same time, technologies can foster participant engagement, regardless of pre-existing taxonomic expertise or experience, and permit new types of data to be collected. Yet, technologies may also create challenges by potentially increasing financial costs, necessitating technological expertise or demanding training of participants. Technology could also reduce people's direct involvement and engagement with nature. In this perspective, we discuss how current technologies have spurred an increase in citizen science projects and how the implementation of emerging technologies in citizen science may enhance scientific impact and public engagement. We show how technology can act as (i) a facilitator of current citizen science and monitoring efforts, (ii) an enabler of new research opportunities, and (iii) a transformer of science, policy and public participation, but could also become (iv) an inhibitor of participation, equity and scientific rigour. Technology is developing fast and promises to provide many exciting opportunities for citizen science and insect monitoring, but while we seize these opportunities, we must remain vigilant against potential risks. This article is part of the theme issue 'Towards a toolkit for global insect biodiversity monitoring'.
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Affiliation(s)
- Julie Koch Sheard
- Department of Ecosystem Services, Helmholtz Centre for Environmental Research - UFZ, Permoserstraße 15, 04318 Leipzig, Germany
- Institute of Biodiversity, Friedrich Schiller University Jena, Dornburger Straße 159, 07743 Jena, Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstraße 4, 04103 Leipzig, Germany
| | - Tim Adriaens
- Research Institute for Nature and Forest (INBO), Havenlaan 88 bus 73, 1000 Brussels, Belgium
| | - Diana E. Bowler
- UK Centre for Ecology & Hydrology, Wallingford, Oxfordshire, OX10 8BB, UK
| | - Andrea Büermann
- Department of Ecosystem Services, Helmholtz Centre for Environmental Research - UFZ, Permoserstraße 15, 04318 Leipzig, Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstraße 4, 04103 Leipzig, Germany
| | - Corey T. Callaghan
- Department of Wildlife Ecology and Conservation, Fort Lauderdale Research and Education Center, University of Florida, FL 33314, USA
| | - Elodie C. M. Camprasse
- School of Life and Environmental Sciences, Deakin University, Melbourne Burwood Campus, 221 Burwood Highway, Burwood, Victoria 3125, Australia
| | - Shawan Chowdhury
- Department of Ecosystem Services, Helmholtz Centre for Environmental Research - UFZ, Permoserstraße 15, 04318 Leipzig, Germany
- Institute of Biodiversity, Friedrich Schiller University Jena, Dornburger Straße 159, 07743 Jena, Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstraße 4, 04103 Leipzig, Germany
| | - Thore Engel
- Department of Ecosystem Services, Helmholtz Centre for Environmental Research - UFZ, Permoserstraße 15, 04318 Leipzig, Germany
- Institute of Biodiversity, Friedrich Schiller University Jena, Dornburger Straße 159, 07743 Jena, Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstraße 4, 04103 Leipzig, Germany
| | - Elizabeth A. Finch
- Department of Ecosystem Services, Helmholtz Centre for Environmental Research - UFZ, Permoserstraße 15, 04318 Leipzig, Germany
- Institute of Biodiversity, Friedrich Schiller University Jena, Dornburger Straße 159, 07743 Jena, Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstraße 4, 04103 Leipzig, Germany
| | - Julia von Gönner
- Department of Ecosystem Services, Helmholtz Centre for Environmental Research - UFZ, Permoserstraße 15, 04318 Leipzig, Germany
- Institute of Biodiversity, Friedrich Schiller University Jena, Dornburger Straße 159, 07743 Jena, Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstraße 4, 04103 Leipzig, Germany
| | - Pen-Yuan Hsing
- Faculty of Life Sciences, University of Bristol, 12a Priory Road, Bristol BS8 1TU, UK
| | - Peter Mikula
- TUM School of Life Sciences, Ecoclimatology, Technical University of Munich, Hans-Carl-von-Carlowitz-Platz 2, 85354 Freising, Germany
- Institute for Advanced Study, Technical University of Munich, Lichtenbergstraße 2a, 85748 Garching, Germany
- Faculty of Environmental Sciences, Czech University of Life Sciences Prague, Kamýcká 129, 16500 Prague, Czech Republic
| | - Rui Ying Rachel Oh
- Department of Ecosystem Services, Helmholtz Centre for Environmental Research - UFZ, Permoserstraße 15, 04318 Leipzig, Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstraße 4, 04103 Leipzig, Germany
| | - Birte Peters
- Department of Ecosystem Services, Helmholtz Centre for Environmental Research - UFZ, Permoserstraße 15, 04318 Leipzig, Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstraße 4, 04103 Leipzig, Germany
| | - Shyam S. Phartyal
- School of Ecology and Environment Studies, Nalanda University, Rajgir 803116, India
| | | | - Jana Wäldchen
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstraße 4, 04103 Leipzig, Germany
- Department of Biogeochemical Integration, Max Planck Institute for Biogeochemistry, Hans-Knöll-Straße 10, 07745 Jena, Germany
| | - Aletta Bonn
- Department of Ecosystem Services, Helmholtz Centre for Environmental Research - UFZ, Permoserstraße 15, 04318 Leipzig, Germany
- Institute of Biodiversity, Friedrich Schiller University Jena, Dornburger Straße 159, 07743 Jena, Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstraße 4, 04103 Leipzig, Germany
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Capinha C, Ceia-Hasse A, de-Miguel S, Vila-Viçosa C, Porto M, Jarić I, Tiago P, Fernández N, Valdez J, McCallum I, Pereira HM. Using citizen science data for predicting the timing of ecological phenomena across regions. Bioscience 2024; 74:383-392. [PMID: 39055369 PMCID: PMC11266983 DOI: 10.1093/biosci/biae041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2023] [Revised: 10/17/2023] [Accepted: 04/09/2024] [Indexed: 07/27/2024] Open
Abstract
The scarcity of long-term observational data has limited the use of statistical or machine-learning techniques for predicting intraannual ecological variation. However, time-stamped citizen-science observation records, supported by media data such as photographs, are increasingly available. In the present article, we present a novel framework based on the concept of relative phenological niche, using machine-learning algorithms to model observation records as a temporal sample of environmental conditions in which the represented ecological phenomenon occurs. Our approach accurately predicts the temporal dynamics of ecological events across large geographical scales and is robust to temporal bias in recording effort. These results highlight the vast potential of citizen-science observation data to predict ecological phenomena across space, including in near real time. The framework is also easily applicable for ecologists and practitioners already using machine-learning and statistics-based predictive approaches.
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Affiliation(s)
- César Capinha
- Centre of Geographical Studies, Institute of Geography and Spatial Planning of the University of Lisbon, Lisbon, Portugal
- Associate Laboratory TerraLisbon, Portugal
| | - Ana Ceia-Hasse
- BIOPOLIS, CIBIO, InBIO Associate Laboratory, University of Porto, Porto, Portugal
- University of Lisbon, LisbonPortugal
| | - Sergio de-Miguel
- Department of Agricultural and Forest Sciences and Engineering, University of Lleida, Lleida, Spain
- Forest Science and Technology Centre of Catalonia, Solsona, Spain
| | - Carlos Vila-Viçosa
- BIOPOLIS, CIBIO, InBIO Associate Laboratory
- Museu de História Natural e da Ciência, University of Porto, Porto, Portugal
| | - Miguel Porto
- BIOPOLIS, CIBIO, InBIO Associate Laboratory, , University of Porto, Porto
- University of Lisbon, Lisbon
- Mértola Biological Station, Mértola, Portugal
| | - Ivan Jarić
- Université Paris-Saclay, CNRS, AgroParisTech, Ecologie Systématique EvolutionParis, France
- Biology Centre of the Czech Academy of Sciences, Institute of Hydrobiology, České Budějovice, Czech Republic
| | - Patricia Tiago
- Centre for Ecology, Evolution, and Environmental Changes & CHANGE--Global Change and Sustainability Institute, at Faculty of Sciences, University of Lisbon, Lisbon, Portugal
| | - Néstor Fernández
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Institute of Biology from the Martin Luther University Halle-Wittenberg, Halle, Germany
| | - Jose Valdez
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Institute of Biology from the Martin Luther University Halle-Wittenberg, Halle, Germany
| | - Ian McCallum
- International Institute for Applied Systems Analysis, Laxenburg, Austria
| | - Henrique Miguel Pereira
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Institute of Biology from the Martin Luther University Halle-Wittenberg, Halle, Germany
- BIOPOLIS and CIBIO, Porto, Portugal
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4
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Ahern A, Hughes DF. Citizen science initiatives document biodiversity baselines at an urban lake. PeerJ 2024; 12:e17209. [PMID: 38646485 PMCID: PMC11032101 DOI: 10.7717/peerj.17209] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2023] [Accepted: 03/18/2024] [Indexed: 04/23/2024] Open
Abstract
Changes to biodiversity from urbanization are occurring worldwide, and baseline data is vital to document the magnitude and direction of these alterations. We set out to document the biodiversity of an urban lake in Eastern Iowa that was devoid of baseline data prior to a renovation project that will convert the site into a major area for human recreation. Throughout the course of one year, we studied the biodiversity at Cedar Lake utilizing the citizen-science application iNaturalist coupled with semi-structured BioBlitz events, which we compared to previous opportunistic observations at the site. From a semi-structured approach to document biodiversity with citizen science, our analyses revealed more diverse community metrics over a shorter period compared to more than a decade of prior observations.
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Affiliation(s)
- Alyssah Ahern
- Department of Biology, Coe College, Cedar Rapids, IA, United States of America
| | - Daniel F. Hughes
- Department of Biology, Coe College, Cedar Rapids, IA, United States of America
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5
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Rogers AM, Yong RQY, Holden MH. The house of a thousand species: The untapped potential of comprehensive biodiversity censuses of urban properties. Ecology 2024; 105:e4225. [PMID: 38038234 DOI: 10.1002/ecy.4225] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/08/2023] [Revised: 10/19/2023] [Accepted: 11/10/2023] [Indexed: 12/02/2023]
Affiliation(s)
- Andrew M Rogers
- School of the Environment, The University of Queensland, Brisbane, Queensland, Australia
| | - Russell Q-Y Yong
- Water Research Group, Unit for Environmental Sciences and Management, North-West University, Potchefstroom, South Africa
| | - Matthew H Holden
- School of Mathematics and Physics, The University of Queensland, Brisbane, Queensland, Australia
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6
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Pocock MJ, Adriaens T, Bertolino S, Eschen R, Essl F, Hulme PE, Jeschke JM, Roy HE, Teixeira H, de Groot M. Citizen science is a vital partnership for invasive alien species management and research. iScience 2024; 27:108623. [PMID: 38205243 PMCID: PMC10776933 DOI: 10.1016/j.isci.2023.108623] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2024] Open
Abstract
Invasive alien species (IAS) adversely impact biodiversity, ecosystem functions, and socio-economics. Citizen science can be an effective tool for IAS surveillance, management, and research, providing large datasets over wide spatial extents and long time periods, with public participants generating knowledge that supports action. We demonstrate how citizen science has contributed knowledge across the biological invasion process, especially for early detection and distribution mapping. However, we recommend that citizen science could be used more for assessing impacts and evaluating the success of IAS management. Citizen science does have limitations, and we explore solutions to two key challenges: ensuring data accuracy and dealing with uneven spatial coverage of potential recorders (which limits the dataset's "fit for purpose"). Greater co-development of citizen science with public stakeholders will help us better realize its potential across the biological invasion process and across ecosystems globally while meeting the needs of participants, local communities, scientists, and decision-makers.
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Affiliation(s)
| | - Tim Adriaens
- Research Institute for Nature and Forest (INBO), Brussels, Belgium
| | - Sandro Bertolino
- Department of Life Sciences and Systems Biology, University of Turin, Turin, Italy
| | | | - Franz Essl
- Division of BioInvasions, Global Change & Macroecology, Department of Botany and Biodiversity Research, University of Vienna, Vienna, Austria
| | - Philip E. Hulme
- Bioprotection Aotearoa, Department of Pest Management and Conservation, Lincoln University, PO Box 84850, Christchurch, Lincoln 7648, New Zealand
| | - Jonathan M. Jeschke
- Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB), Berlin, Germany
- Institute of Biology, Freie Universität Berlin, Berlin, Germany
| | - Helen E. Roy
- UK Centre for Ecology & Hydrology, Wallingford, Oxfordshire, UK
- Centre for Ecology and Conservation, Faculty of Environment, Science and Economy, University of Exeter, Penryn, United Kingdom
| | - Heliana Teixeira
- Centre for Environmental and Marine Studies, Department of Biology, University of Aveiro, Campus de Santiago, Aveiro, Portugal
| | - Maarten de Groot
- Slovenian Forestry Institute, Večna pot 2, 1000 Ljubljana, Slovenia
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