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For: Zhaxybayeva O, Doolittle WF, Papke RT, Gogarten JP. Intertwined evolutionary histories of marine Synechococcus and Prochlorococcus marinus. Genome Biol Evol 2009;1:325-39. [PMID: 20333202 PMCID: PMC2817427 DOI: 10.1093/gbe/evp032] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/28/2009] [Indexed: 02/04/2023]  Open
Number Cited by Other Article(s)
1
Fournier GP. Stem Life: A Framework for Understanding the Prebiotic-Biotic Transition. J Mol Evol 2024;92:539-549. [PMID: 39244680 PMCID: PMC11458642 DOI: 10.1007/s00239-024-10201-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Accepted: 08/27/2024] [Indexed: 09/10/2024]
2
Kloub L, Gosselin S, Graf J, Gogarten JP, Bansal MS. Investigating Additive and Replacing Horizontal Gene Transfers Using Phylogenies and Whole Genomes. Genome Biol Evol 2024;16:evae180. [PMID: 39163267 PMCID: PMC11375855 DOI: 10.1093/gbe/evae180] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2024] [Revised: 07/29/2024] [Accepted: 08/12/2024] [Indexed: 08/22/2024]  Open
3
Daakour S, Nelson DR, Fu W, Jaiswal A, Dohai B, Alzahmi AS, Koussa J, Huang X, Shen Y, Twizere JC, Salehi-Ashtiani K. Adaptive Evolution Signatures in Prochlorococcus: Open Reading Frame (ORF)eome Resources and Insights from Comparative Genomics. Microorganisms 2024;12:1720. [PMID: 39203562 PMCID: PMC11357015 DOI: 10.3390/microorganisms12081720] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2024] [Revised: 07/30/2024] [Accepted: 08/13/2024] [Indexed: 09/03/2024]  Open
4
Li T, Ma Z, Ding T, Yang Y, Wang F, Wan X, Liang F, Chen X, Yao H. Codon usage bias and phylogenetic analysis of chloroplast genome in 36 gracilariaceae species. Funct Integr Genomics 2024;24:45. [PMID: 38429550 DOI: 10.1007/s10142-024-01316-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2023] [Revised: 02/11/2024] [Accepted: 02/13/2024] [Indexed: 03/03/2024]
5
Stanojković A, Skoupý S, Škaloud P, Dvořák P. High genomic differentiation and limited gene flow indicate recent cryptic speciation within the genus Laspinema (cyanobacteria). Front Microbiol 2022;13:977454. [PMID: 36160208 PMCID: PMC9500459 DOI: 10.3389/fmicb.2022.977454] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2022] [Accepted: 08/15/2022] [Indexed: 11/18/2022]  Open
6
Smith JT, Andam CP. Extensive Horizontal Gene Transfer within and between Species of Coagulase-Negative Staphylococcus. Genome Biol Evol 2021;13:evab206. [PMID: 34498042 PMCID: PMC8462280 DOI: 10.1093/gbe/evab206] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/01/2021] [Indexed: 01/10/2023]  Open
7
Occurrence and diversity of viruses associated with cyanobacterial communities in a Brazilian freshwater reservoir. Braz J Microbiol 2021;52:773-785. [PMID: 33791954 DOI: 10.1007/s42770-021-00473-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2020] [Accepted: 03/25/2021] [Indexed: 02/06/2023]  Open
8
Kim A, Rosenberg NA, Degnan JH. Probabilities of Unranked and Ranked Anomaly Zones under Birth-Death Models. Mol Biol Evol 2021;37:1480-1494. [PMID: 31860090 DOI: 10.1093/molbev/msz305] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]  Open
9
Hammerschmidt K, Landan G, Domingues Kümmel Tria F, Alcorta J, Dagan T. The Order of Trait Emergence in the Evolution of Cyanobacterial Multicellularity. Genome Biol Evol 2020;13:5999801. [PMID: 33231627 PMCID: PMC7937182 DOI: 10.1093/gbe/evaa249] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/19/2020] [Indexed: 01/31/2023]  Open
10
Bauer KM, Dicovitsky R, Pellegrini M, Zhaxybayeva O, Ragusa MJ. The structure of a highly-conserved picocyanobacterial protein reveals a Tudor domain with an RNA-binding function. J Biol Chem 2019;294:14333-14344. [PMID: 31391250 DOI: 10.1074/jbc.ra119.007938] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2019] [Revised: 08/06/2019] [Indexed: 11/06/2022]  Open
11
Park CJ, Andam CP. Within-Species Genomic Variation and Variable Patterns of Recombination in the Tetracycline Producer Streptomyces rimosus. Front Microbiol 2019;10:552. [PMID: 30949149 PMCID: PMC6437091 DOI: 10.3389/fmicb.2019.00552] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2019] [Accepted: 03/04/2019] [Indexed: 01/09/2023]  Open
12
Impact of Homologous Recombination on the Evolution of Prokaryotic Core Genomes. mBio 2019;10:mBio.02494-18. [PMID: 30670614 PMCID: PMC6343036 DOI: 10.1128/mbio.02494-18] [Citation(s) in RCA: 52] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]  Open
13
Bobay LM, Ochman H. Factors driving effective population size and pan-genome evolution in bacteria. BMC Evol Biol 2018;18:153. [PMID: 30314447 PMCID: PMC6186134 DOI: 10.1186/s12862-018-1272-4] [Citation(s) in RCA: 89] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2018] [Accepted: 10/04/2018] [Indexed: 02/07/2023]  Open
14
Degnan JH, Rhodes JA. There are no caterpillars in a wicked forest. Theor Popul Biol 2015;105:17-23. [DOI: 10.1016/j.tpb.2015.08.007] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2015] [Revised: 08/26/2015] [Accepted: 08/28/2015] [Indexed: 10/23/2022]
15
Co-occurring Synechococcus ecotypes occupy four major oceanic regimes defined by temperature, macronutrients and iron. ISME JOURNAL 2015. [PMID: 26208139 DOI: 10.1038/ismej.2015.115] [Citation(s) in RCA: 112] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
16
Inter-phylum HGT has shaped the metabolism of many mesophilic and anaerobic bacteria. ISME JOURNAL 2015;9:958-67. [PMID: 25314320 DOI: 10.1038/ismej.2014.193] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2014] [Revised: 07/12/2014] [Accepted: 08/25/2014] [Indexed: 11/08/2022]
17
Zorz JK, Allanach JR, Murphy CD, Roodvoets MS, Campbell DA, Cockshutt AM. The RUBISCO to Photosystem II Ratio Limits the Maximum Photosynthetic Rate in Picocyanobacteria. Life (Basel) 2015;5:403-17. [PMID: 25658887 PMCID: PMC4390859 DOI: 10.3390/life5010403] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2014] [Revised: 01/12/2015] [Accepted: 01/22/2015] [Indexed: 01/22/2023]  Open
18
Prochlorococcus: the structure and function of collective diversity. Nat Rev Microbiol 2014;13:13-27. [DOI: 10.1038/nrmicro3378] [Citation(s) in RCA: 322] [Impact Index Per Article: 29.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
19
Whidden CE, DeZeeuw KG, Zorz JK, Joy AP, Barnett DA, Johnson MS, Zhaxybayeva O, Cockshutt AM. Quantitative and functional characterization of the hyper-conserved protein of Prochlorococcus and marine Synechococcus. PLoS One 2014;9:e109327. [PMID: 25360678 PMCID: PMC4215834 DOI: 10.1371/journal.pone.0109327] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2014] [Accepted: 09/11/2014] [Indexed: 11/26/2022]  Open
20
Biller SJ, Berube PM, Berta-Thompson JW, Kelly L, Roggensack SE, Awad L, Roache-Johnson KH, Ding H, Giovannoni SJ, Rocap G, Moore LR, Chisholm SW. Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus. Sci Data 2014;1:140034. [PMID: 25977791 PMCID: PMC4421930 DOI: 10.1038/sdata.2014.34] [Citation(s) in RCA: 71] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2014] [Accepted: 08/19/2014] [Indexed: 11/30/2022]  Open
21
Ochoa de Alda JAG, Esteban R, Diago ML, Houmard J. The plastid ancestor originated among one of the major cyanobacterial lineages. Nat Commun 2014;5:4937. [PMID: 25222494 DOI: 10.1038/ncomms5937] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2014] [Accepted: 08/08/2014] [Indexed: 12/15/2022]  Open
22
Reductive genome evolution at both ends of the bacterial population size spectrum. Nat Rev Microbiol 2014;12:841-50. [DOI: 10.1038/nrmicro3331] [Citation(s) in RCA: 111] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
23
Prabha R, Singh DP, Gupta SK, Rai A. Whole genome phylogeny of Prochlorococcus marinus group of cyanobacteria: genome alignment and overlapping gene approach. Interdiscip Sci 2014;6:149-57. [PMID: 25172453 DOI: 10.1007/s12539-013-0024-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2013] [Revised: 10/21/2013] [Accepted: 01/10/2014] [Indexed: 11/29/2022]
24
Matzke NJ, Shih PM, Kerfeld CA. Bayesian analysis of congruence of core genes in Prochlorococcus and Synechococcus and implications on horizontal gene transfer. PLoS One 2014;9:e85103. [PMID: 24465485 PMCID: PMC3897415 DOI: 10.1371/journal.pone.0085103] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2013] [Accepted: 11/22/2013] [Indexed: 01/28/2023]  Open
25
Saw JHW, Schatz M, Brown MV, Kunkel DD, Foster JS, Shick H, Christensen S, Hou S, Wan X, Donachie SP. Cultivation and complete genome sequencing of Gloeobacter kilaueensis sp. nov., from a lava cave in Kīlauea Caldera, Hawai'i. PLoS One 2013;8:e76376. [PMID: 24194836 PMCID: PMC3806779 DOI: 10.1371/journal.pone.0076376] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2013] [Accepted: 08/24/2013] [Indexed: 02/05/2023]  Open
26
Skippington E, Ragan MA. Phylogeny rather than ecology or lifestyle biases the construction of Escherichia coli-Shigella genetic exchange communities. Open Biol 2013;2:120112. [PMID: 23091700 PMCID: PMC3472396 DOI: 10.1098/rsob.120112] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2012] [Accepted: 08/20/2012] [Indexed: 11/12/2022]  Open
27
Williams D, Gogarten JP, Papke RT. Quantifying homologous replacement of loci between haloarchaeal species. Genome Biol Evol 2013;4:1223-44. [PMID: 23160063 PMCID: PMC3542582 DOI: 10.1093/gbe/evs098] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]  Open
28
Stolzer M, Lai H, Xu M, Sathaye D, Vernot B, Durand D. Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees. ACTA ACUST UNITED AC 2013;28:i409-i415. [PMID: 22962460 PMCID: PMC3436813 DOI: 10.1093/bioinformatics/bts386] [Citation(s) in RCA: 218] [Impact Index Per Article: 18.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
29
Bansal MS, Banay G, Harlow TJ, Gogarten JP, Shamir R. Systematic inference of highways of horizontal gene transfer in prokaryotes. ACTA ACUST UNITED AC 2013;29:571-9. [PMID: 23335015 DOI: 10.1093/bioinformatics/btt021] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
30
Dagan T, Roettger M, Stucken K, Landan G, Koch R, Major P, Gould SB, Goremykin VV, Rippka R, Tandeau de Marsac N, Gugger M, Lockhart PJ, Allen JF, Brune I, Maus I, Pühler A, Martin WF. Genomes of Stigonematalean cyanobacteria (subsection V) and the evolution of oxygenic photosynthesis from prokaryotes to plastids. Genome Biol Evol 2013;5:31-44. [PMID: 23221676 PMCID: PMC3595030 DOI: 10.1093/gbe/evs117] [Citation(s) in RCA: 154] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/04/2012] [Indexed: 01/12/2023]  Open
31
Henley WJ, Litaker RW, Novoveská L, Duke CS, Quemada HD, Sayre RT. Initial risk assessment of genetically modified (GM) microalgae for commodity-scale biofuel cultivation. ALGAL RES 2013. [DOI: 10.1016/j.algal.2012.11.001] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
32
Lapierre P, Lasek-Nesselquist E, Gogarten JP. The impact of HGT on phylogenomic reconstruction methods. Brief Bioinform 2012;15:79-90. [DOI: 10.1093/bib/bbs050] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]  Open
33
Gupta RS. Origin and Spread of Photosynthesis Based upon Conserved Sequence Features in Key Bacteriochlorophyll Biosynthesis Proteins. Mol Biol Evol 2012;29:3397-412. [DOI: 10.1093/molbev/mss145] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
34
Mao F, Williams D, Zhaxybayeva O, Poptsova M, Lapierre P, Gogarten JP, Xu Y. Quartet decomposition server: a platform for analyzing phylogenetic trees. BMC Bioinformatics 2012;13:123. [PMID: 22676320 PMCID: PMC3447714 DOI: 10.1186/1471-2105-13-123] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2011] [Accepted: 06/07/2012] [Indexed: 11/11/2022]  Open
35
Temporal orchestration of glycogen synthase (GlgA) gene expression and glycogen accumulation in the oceanic picoplanktonic cyanobacterium Synechococcus sp. strain WH8103. Appl Environ Microbiol 2012;78:4744-7. [PMID: 22522678 DOI: 10.1128/aem.00254-12] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
36
Papke RT, Gogarten JP. Ecology. How bacterial lineages emerge. Science 2012;336:45-6. [PMID: 22491845 DOI: 10.1126/science.1219241] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
37
Morrissey J, Bowler C. Iron utilization in marine cyanobacteria and eukaryotic algae. Front Microbiol 2012;3:43. [PMID: 22408637 PMCID: PMC3296057 DOI: 10.3389/fmicb.2012.00043] [Citation(s) in RCA: 83] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2011] [Accepted: 01/27/2012] [Indexed: 12/21/2022]  Open
38
de la Haba RR, Márquez MC, Papke RT, Ventosa A. Multilocus sequence analysis of the family Halomonadaceae. Int J Syst Evol Microbiol 2012;62:520-538. [DOI: 10.1099/ijs.0.032938-0] [Citation(s) in RCA: 74] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
39
Mazard S, Ostrowski M, Partensky F, Scanlan DJ. Multi-locus sequence analysis, taxonomic resolution and biogeography of marine Synechococcus. Environ Microbiol 2012;14:372-86. [PMID: 21651684 DOI: 10.1111/j.1462-2920.2011.02514.x] [Citation(s) in RCA: 84] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
40
Bansal MS, Banay G, Gogarten JP, Shamir R. Detecting highways of horizontal gene transfer. J Comput Biol 2012;18:1087-114. [PMID: 21899418 DOI: 10.1089/cmb.2011.0066] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
41
Bay RA, Bielawski JP. Recombination Detection Under Evolutionary Scenarios Relevant to Functional Divergence. J Mol Evol 2012;73:273-86. [DOI: 10.1007/s00239-011-9473-0] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2011] [Accepted: 11/07/2011] [Indexed: 12/01/2022]
42
Yu T, Li J, Yang Y, Qi L, Chen B, Zhao F, Bao Q, Wu J. Codon usage patterns and adaptive evolution of marine unicellular cyanobacteria Synechococcus and Prochlorococcus. Mol Phylogenet Evol 2012;62:206-13. [DOI: 10.1016/j.ympev.2011.09.013] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2011] [Revised: 09/03/2011] [Accepted: 09/23/2011] [Indexed: 10/16/2022]
43
Narechania A, Baker RH, Sit R, Kolokotronis SO, DeSalle R, Planet PJ. Random Addition Concatenation Analysis: a novel approach to the exploration of phylogenomic signal reveals strong agreement between core and shell genomic partitions in the cyanobacteria. Genome Biol Evol 2011;4:30-43. [PMID: 22094860 PMCID: PMC3267395 DOI: 10.1093/gbe/evr121] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/12/2011] [Indexed: 11/14/2022]  Open
44
Mühling M. On the culture-independent assessment of the diversity and distribution of Prochlorococcus. Environ Microbiol 2011;14:567-79. [DOI: 10.1111/j.1462-2920.2011.02589.x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
45
Tai V, Poon AFY, Paulsen IT, Palenik B. Selection in coastal Synechococcus (cyanobacteria) populations evaluated from environmental metagenomes. PLoS One 2011;6:e24249. [PMID: 21931665 PMCID: PMC3170327 DOI: 10.1371/journal.pone.0024249] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2011] [Accepted: 08/05/2011] [Indexed: 11/19/2022]  Open
46
Rae BD, Förster B, Badger MR, Price GD. The CO2-concentrating mechanism of Synechococcus WH5701 is composed of native and horizontally-acquired components. PHOTOSYNTHESIS RESEARCH 2011;109:59-72. [PMID: 21384181 DOI: 10.1007/s11120-011-9641-5] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2010] [Accepted: 02/24/2011] [Indexed: 05/30/2023]
47
Beauregard-Racine J, Bicep C, Schliep K, Lopez P, Lapointe FJ, Bapteste E. Of woods and webs: possible alternatives to the tree of life for studying genomic fluidity in E. coli. Biol Direct 2011;6:39; discussion 39. [PMID: 21774799 PMCID: PMC3160433 DOI: 10.1186/1745-6150-6-39] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2011] [Accepted: 07/20/2011] [Indexed: 12/26/2022]  Open
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Dreher TW, Brown N, Bozarth CS, Schwartz AD, Riscoe E, Thrash C, Bennett SE, Tzeng SC, Maier CS. A freshwater cyanophage whose genome indicates close relationships to photosynthetic marine cyanomyophages. Environ Microbiol 2011;13:1858-74. [PMID: 21605306 PMCID: PMC4185292 DOI: 10.1111/j.1462-2920.2011.02502.x] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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O'Malley MA, Koonin EV. How stands the Tree of Life a century and a half after The Origin? Biol Direct 2011;6:32. [PMID: 21714936 PMCID: PMC3158114 DOI: 10.1186/1745-6150-6-32] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2011] [Accepted: 06/30/2011] [Indexed: 12/21/2022]  Open
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Klatt CG, Wood JM, Rusch DB, Bateson MM, Hamamura N, Heidelberg JF, Grossman AR, Bhaya D, Cohan FM, Kühl M, Bryant DA, Ward DM. Community ecology of hot spring cyanobacterial mats: predominant populations and their functional potential. ISME JOURNAL 2011;5:1262-78. [PMID: 21697961 DOI: 10.1038/ismej.2011.73] [Citation(s) in RCA: 137] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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