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For: Cui X, Hsia AP, Liu F, Ashlock DA, Wise RP, Schnable PS. Alternative transcription initiation sites and polyadenylation sites are recruited during Mu suppression at the rf2a locus of maize. Genetics 2003;163:685-98. [PMID: 12618406 PMCID: PMC1462470 DOI: 10.1093/genetics/163.2.685] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
Number Cited by Other Article(s)
1
Ellison EL, Zhou P, Hermanson P, Chu YH, Read A, Hirsch CN, Grotewold E, Springer NM. Mutator transposon insertions within maize genes often provide a novel outward reading promoter. Genetics 2023;225:iyad171. [PMID: 37815810 DOI: 10.1093/genetics/iyad171] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2023] [Accepted: 09/04/2023] [Indexed: 10/11/2023]  Open
2
Wang PH, Kumar S, Zeng J, McEwan R, Wright TR, Gupta M. Transcription Terminator-Mediated Enhancement in Transgene Expression in Maize: Preponderance of the AUGAAU Motif Overlapping With Poly(A) Signals. FRONTIERS IN PLANT SCIENCE 2020;11:570778. [PMID: 33178242 PMCID: PMC7591816 DOI: 10.3389/fpls.2020.570778] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2020] [Accepted: 09/11/2020] [Indexed: 05/08/2023]
3
Sahebi M, Hanafi MM, van Wijnen AJ, Rice D, Rafii MY, Azizi P, Osman M, Taheri S, Bakar MFA, Isa MNM, Noor YM. Contribution of transposable elements in the plant's genome. Gene 2018;665:155-166. [PMID: 29684486 DOI: 10.1016/j.gene.2018.04.050] [Citation(s) in RCA: 46] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2017] [Revised: 04/04/2018] [Accepted: 04/18/2018] [Indexed: 12/26/2022]
4
Hirsch CD, Springer NM. Transposable element influences on gene expression in plants. BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS 2016;1860:157-165. [PMID: 27235540 DOI: 10.1016/j.bbagrm.2016.05.010] [Citation(s) in RCA: 140] [Impact Index Per Article: 15.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2016] [Revised: 05/17/2016] [Accepted: 05/18/2016] [Indexed: 01/29/2023]
5
Mutator and MULE Transposons. Microbiol Spectr 2016;3:MDNA3-0032-2014. [PMID: 26104710 DOI: 10.1128/microbiolspec.mdna3-0032-2014] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
6
Hunter CT, Suzuki M, Saunders J, Wu S, Tasi A, McCarty DR, Koch KE. Phenotype to genotype using forward-genetic Mu-seq for identification and functional classification of maize mutants. FRONTIERS IN PLANT SCIENCE 2014;4:545. [PMID: 24432026 PMCID: PMC3882665 DOI: 10.3389/fpls.2013.00545] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2013] [Accepted: 12/12/2013] [Indexed: 05/08/2023]
7
Uchiyama T, Hiura S, Ebinuma I, Senda M, Mikami T, Martin C, Kishima Y. A pair of transposons coordinately suppresses gene expression, independent of pathways mediated by siRNA in Antirrhinum. THE NEW PHYTOLOGIST 2013;197:431-440. [PMID: 23190182 DOI: 10.1111/nph.12041] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2012] [Accepted: 10/07/2012] [Indexed: 05/22/2023]
8
Goettel W, Messing J. Divergence of gene regulation through chromosomal rearrangements. BMC Genomics 2010;11:678. [PMID: 21118519 PMCID: PMC3014980 DOI: 10.1186/1471-2164-11-678] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2010] [Accepted: 11/30/2010] [Indexed: 11/26/2022]  Open
9
Shapiro JA. Mobile DNA and evolution in the 21st century. Mob DNA 2010;1:4. [PMID: 20226073 PMCID: PMC2836002 DOI: 10.1186/1759-8753-1-4] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2009] [Accepted: 01/25/2010] [Indexed: 01/05/2023]  Open
10
Wei F, Stein JC, Liang C, Zhang J, Fulton RS, Baucom RS, De Paoli E, Zhou S, Yang L, Han Y, Pasternak S, Narechania A, Zhang L, Yeh CT, Ying K, Nagel DH, Collura K, Kudrna D, Currie J, Lin J, Kim H, Angelova A, Scara G, Wissotski M, Golser W, Courtney L, Kruchowski S, Graves TA, Rock SM, Adams S, Fulton LA, Fronick C, Courtney W, Kramer M, Spiegel L, Nascimento L, Kalyanaraman A, Chaparro C, Deragon JM, Miguel PS, Jiang N, Wessler SR, Green PJ, Yu Y, Schwartz DC, Meyers BC, Bennetzen JL, Martienssen RA, McCombie WR, Aluru S, Clifton SW, Schnable PS, Ware D, Wilson RK, Wing RA. Detailed analysis of a contiguous 22-Mb region of the maize genome. PLoS Genet 2009;5:e1000728. [PMID: 19936048 PMCID: PMC2773423 DOI: 10.1371/journal.pgen.1000728] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2009] [Accepted: 10/16/2009] [Indexed: 12/20/2022]  Open
11
Uchiyama T, Fujino K, Ogawa T, Wakatsuki A, Kishima Y, Mikami T, Sano Y. Stable transcription activities dependent on an orientation of Tam3 transposon insertions into Antirrhinum and yeast promoters occur only within chromatin. PLANT PHYSIOLOGY 2009;151:1557-69. [PMID: 19759347 PMCID: PMC2773084 DOI: 10.1104/pp.109.142356] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2009] [Accepted: 09/09/2009] [Indexed: 05/28/2023]
12
Disruption of imprinting by mutator transposon insertions in the 5' proximal regions of the Zea mays Mez1 locus. Genetics 2009;181:1229-37. [PMID: 19204379 DOI: 10.1534/genetics.108.093666] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
13
Hochholdinger F, Wen TJ, Zimmermann R, Chimot-Marolle P, da Costa e Silva O, Bruce W, Lamkey KR, Wienand U, Schnable PS. The maize (Zea mays L.) roothairless3 gene encodes a putative GPI-anchored, monocot-specific, COBRA-like protein that significantly affects grain yield. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2008;54:888-98. [PMID: 18298667 PMCID: PMC2440564 DOI: 10.1111/j.1365-313x.2008.03459.x] [Citation(s) in RCA: 107] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2007] [Revised: 01/24/2008] [Accepted: 02/07/2008] [Indexed: 05/18/2023]
14
Robbins ML, Sekhon RS, Meeley R, Chopra S. A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize. Genetics 2008;178:1859-74. [PMID: 18430921 PMCID: PMC2323782 DOI: 10.1534/genetics.107.082503] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2007] [Accepted: 01/28/2008] [Indexed: 12/17/2022]  Open
15
Role of RAD51 in the repair of MuDR-induced double-strand breaks in maize (Zea mays L.). Genetics 2008;178:57-66. [PMID: 18202358 DOI: 10.1534/genetics.107.080374] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
16
Schmidt S, Lombardi M, Gardiner DM, Ayliffe M, Anderson PA. The M flax rust resistance pre-mRNA is alternatively spliced and contains a complex upstream untranslated region. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2007;115:373-82. [PMID: 17534592 DOI: 10.1007/s00122-007-0571-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2006] [Accepted: 04/27/2007] [Indexed: 05/15/2023]
17
Li J, Harper LC, Golubovskaya I, Wang CR, Weber D, Meeley RB, McElver J, Bowen B, Cande WZ, Schnable PS. Functional analysis of maize RAD51 in meiosis and double-strand break repair. Genetics 2007;176:1469-82. [PMID: 17507687 PMCID: PMC1931559 DOI: 10.1534/genetics.106.062604] [Citation(s) in RCA: 65] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
18
Ivanov MK, Dymshits GM. Cytoplasmic male sterility and restoration of pollen fertility in higher plants. RUSS J GENET+ 2007. [DOI: 10.1134/s1022795407040023] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
19
Tang S, Hass CG, Knapp SJ. Ty3/gypsy-like retrotransposon knockout of a 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase is non-lethal, uncovers a cryptic paralogous mutation, and produces novel tocopherol (vitamin E) profiles in sunflower. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2006;113:783-99. [PMID: 16902787 DOI: 10.1007/s00122-006-0321-3] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2006] [Accepted: 05/13/2006] [Indexed: 05/11/2023]
20
Hass CG, Tang S, Leonard S, Traber MG, Miller JF, Knapp SJ. Three non-allelic epistatically interacting methyltransferase mutations produce novel tocopherol (vitamin E) profiles in sunflower. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2006;113:767-82. [PMID: 16896719 DOI: 10.1007/s00122-006-0320-4] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2006] [Accepted: 05/13/2006] [Indexed: 05/11/2023]
21
May BP, Liu H, Vollbrecht E, Senior L, Rabinowicz PD, Roh D, Pan X, Stein L, Freeling M, Alexander D, Martienssen R. Maize-targeted mutagenesis: A knockout resource for maize. Proc Natl Acad Sci U S A 2003;100:11541-6. [PMID: 12954979 PMCID: PMC208794 DOI: 10.1073/pnas.1831119100] [Citation(s) in RCA: 79] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2003] [Indexed: 11/18/2022]  Open
22
Liu F, Schnable PS. Functional specialization of maize mitochondrial aldehyde dehydrogenases. PLANT PHYSIOLOGY 2002;130:1657-74. [PMID: 12481049 PMCID: PMC166681 DOI: 10.1104/pp.012336] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2002] [Revised: 08/28/2002] [Accepted: 09/25/2002] [Indexed: 05/18/2023]
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