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Xu J, Huang X, Wang X, Li S, Ou X, Yuan Q, Wang Y, He H, Jiang W, Zhou T. Comparative transcriptome analysis reveals the role of sugar signaling in response to high temperature stress in Armillaria gallica. BMC Microbiol 2025; 25:247. [PMID: 40287614 PMCID: PMC12032774 DOI: 10.1186/s12866-025-03907-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2024] [Accepted: 03/18/2025] [Indexed: 04/29/2025] Open
Abstract
BACKGROUND Armillaria gallica establish a unique symbiotic relationship with Gastrodia elata, which is a valuable Chinese herbal plant that relies on this symbiosis. High temperature (HT) seriously affected the growth of both A. gallica and G. elata. However, the molecular mechanisms and gene networks involved in the response of A. gallica to HT are not well understood. RESULTS In this study, transcriptomic analyses at multiple time point were conducted using rhizomorph from two A. gallica strains, GZ1 (tolerance to HT) and SX8 (sensitive to HT) under HT and normal temperature (NT) conditions. We identified 2,056 differentially expressed genes, primarily associated with carbohydrate metabolism and protein processing in endoplasmic reticulum (ER). Heat shock proteins (HSP20 and HSP90) were up-regulated in both GZ1 and SX8 under HT, indicating a conserved HT induced response in A. gallica. Additionally, genes related to glycolysis were up-regulated in GZ1 following HT treatment, while genes involved in the conversion of sugar to amino acids were down-regulated in GZ1 under HT treatment. GZ1 also showed an increased accumulation of soluble sugar and polysaccharide under HT, which were significantly correlated with pyruvate kinase and aldo/keto reductase genes. Furthermore, a sucrose concentration of 30 g/L enhanced HT resistance in A. gallica. CONCLUSIONS These results reveal that sugar signaling, particularly in carbohydrate metabolism, plays a critical role in the rhizomorph response to HT stress. Both conserved and species-specific transcriptome changes may contribute to the dynamic regulation of rhizomorph development during adaptation to HT stress in A. gallica. CLINICAL TRIAL NUMBER Not applicable.
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Affiliation(s)
- Jiao Xu
- Guizhou University of Traditional Chinese Medicine, Guiyang, 550025, China
- Guizhou Key Laboratory for Germplasm Innovation and Resource-Efficient Utilization of Dao-di Herbs, Guiyang, 550025, China
| | - Xuan Huang
- Guizhou University of Traditional Chinese Medicine, Guiyang, 550025, China
| | - Xiuwen Wang
- Guizhou University of Traditional Chinese Medicine, Guiyang, 550025, China
| | - Shengnan Li
- Guizhou University of Traditional Chinese Medicine, Guiyang, 550025, China
| | - Xiaohong Ou
- Guizhou University of Traditional Chinese Medicine, Guiyang, 550025, China
- Guizhou Key Laboratory for Germplasm Innovation and Resource-Efficient Utilization of Dao-di Herbs, Guiyang, 550025, China
| | - Qingsong Yuan
- Guizhou University of Traditional Chinese Medicine, Guiyang, 550025, China
- Guizhou Key Laboratory for Germplasm Innovation and Resource-Efficient Utilization of Dao-di Herbs, Guiyang, 550025, China
- State Key Laboratory for Quality Ensurance and Sustainable Use of Dao-di Herbs, Beijing, 100700, P. R. China
| | - Yanhong Wang
- Guizhou University of Traditional Chinese Medicine, Guiyang, 550025, China
- Guizhou Key Laboratory for Germplasm Innovation and Resource-Efficient Utilization of Dao-di Herbs, Guiyang, 550025, China
| | - Hua He
- Guizhou University of Traditional Chinese Medicine, Guiyang, 550025, China
- Guizhou Key Laboratory for Germplasm Innovation and Resource-Efficient Utilization of Dao-di Herbs, Guiyang, 550025, China
| | - Weike Jiang
- Guizhou University of Traditional Chinese Medicine, Guiyang, 550025, China
- Guizhou Key Laboratory for Germplasm Innovation and Resource-Efficient Utilization of Dao-di Herbs, Guiyang, 550025, China
| | - Tao Zhou
- Guizhou University of Traditional Chinese Medicine, Guiyang, 550025, China.
- Guizhou Key Laboratory for Germplasm Innovation and Resource-Efficient Utilization of Dao-di Herbs, Guiyang, 550025, China.
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Munawar S, Ikram RM, Roetter RP, Hussain I, Afzal M, Ghazy AH, Ahmad S, Habib-Ur-Rahman M. Silicon seed inoculation enhances antioxidants, physiology and yield of hybrid maize under heat stress. BMC PLANT BIOLOGY 2025; 25:417. [PMID: 40175913 PMCID: PMC11963459 DOI: 10.1186/s12870-025-06399-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Accepted: 03/13/2025] [Indexed: 04/04/2025]
Abstract
BACKGROUND Heat stress, next to drought, is one of the major constraints to maize crop growth, development and sustainable yield in the tropics and sub-tropics, particularly in arid and semi-arid climatic regions. Hence, there is a dire need to explore strategies that alleviate adverse effects of heat stress. In this regard, silicon (Si) is an important plant nutrient which may support crop in alleviating heat stress-induced damages by modulating plant defense mechanisms. The aim of the study was to explore the potential role of Si for inducing heat tolerance in hybrid maize. Yet, to date, limited knowledge is available on how Si modulates plant defense mechanisms to induce heat tolerance in maize crop. METHODS Two maize hybrids were adopted for field experiment (heat tolerant and sensitive selected from a pot experiment study) on the basis of traits performance through screening in the glasshouse. Six maize hybrids were tested at different heat stress levels (T1 = control; T2 = 40 °C ± 3 and T3 = 45 °C ± 3 for a period of 6 h per day) at six leaf growth stage (V6) in the glasshouse. Secondly, a field experiment was conducted to evaluate the effect of Si seed inoculation [Si0 = 0.0 mM (control); Si1 = 3.0 mM (recommended); Si2 = 6.0 mM] on physiology, growth, antioxidants activity and yield traits of two selected maize hybrids; H1 = AA-9633 (heat sensitive); H2 = YH-5427 (heat tolerant) under heat stress conditions (HS0 = control (without heat stress); HS1 = heat stress at pollination stage- 65 days after sowing for a period of 8 consecutive days). RESULTS The field study results showed that maize hybrid "YH-5427", a prior rated as heat tolerant, produced higher cob length, number of grains per cob, thousand grain weight and grain yield through improved photosynthetic rate, stomatal conductance, water use efficiency, activity of superoxide dismutase, peroxidase and catalase with the seed inoculation of Si (6.0 mM) under heat stress conditions. However, heat sensitive hybrid (AA-9633) produced reduced grain yield (9.26%) and yield components as attained by YH-5427 with the seed inoculation of Si (6.0 mM) under heat stress conditions. CONCLUSION Maize hybrid YH-5427 with Si seed inoculation (6 mM) is a promising option to maintain relatively high maize grain yield (t ha- 1) under heat stress conditions.
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Affiliation(s)
- Sajid Munawar
- Department of Agronomy, Faculty of Agriculture and Environmental Sciences, MNS University of Agriculture, Multan, Pakistan
| | - Rao Muhammad Ikram
- Department of Agronomy, Faculty of Agriculture and Environmental Sciences, MNS University of Agriculture, Multan, Pakistan
| | - Reimund P Roetter
- Tropical Plant Production and Agricultural Systems Modelling (TROPAGS), University of Goettingen, Grisebachstr. 6, 37077, Goettingen, Germany
- Campus Centre of Biodiversity and Sustainable Land Use (CBL), University of Goettingen, Buesgenweg 1, 37077, Goettingen, Germany
| | - Ijaz Hussain
- Department of Agronomy, Faculty of Agriculture and Environmental Sciences, MNS University of Agriculture, Multan, Pakistan
| | - Muhammad Afzal
- Plant Production Department, College of Food and Agriculture Sciences, King Saud University, Riyadh, 2460, 11451, Saudi Arabia
| | - Abdel-Halim Ghazy
- Plant Production Department, College of Food and Agriculture Sciences, King Saud University, Riyadh, 2460, 11451, Saudi Arabia
| | - Saeed Ahmad
- Department of Agronomy, Faculty of Agriculture and Environmental Sciences, MNS University of Agriculture, Multan, Pakistan
- Department of Agricultural and Biological Engineering, University of Florida, Gainesville, FL, USA
| | - Muhammad Habib-Ur-Rahman
- Tropical Plant Production and Agricultural Systems Modelling (TROPAGS), University of Goettingen, Grisebachstr. 6, 37077, Goettingen, Germany.
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Fu C, Zhou Y, Liu A, Chen R, Yin L, Li C, Mao H. Genome-wide association study for seedling heat tolerance under two temperature conditions in bread wheat (Triticum aestivum L.). BMC PLANT BIOLOGY 2024; 24:430. [PMID: 38773371 PMCID: PMC11107014 DOI: 10.1186/s12870-024-05116-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2023] [Accepted: 05/08/2024] [Indexed: 05/23/2024]
Abstract
BACKGROUND As the greenhouse effect intensifies, global temperatures are steadily increasing, posing a challenge to bread wheat (Triticum aestivum L.) production. It is imperative to comprehend the mechanism of high temperature tolerance in wheat and implement breeding programs to identify and develop heat-tolerant wheat germplasm and cultivars. RESULTS To identify quantitative trait loci (QTL) related to heat stress tolerance (HST) at seedling stage in wheat, a panel of 253 wheat accessions which were re-sequenced used to conduct genome-wide association studies (GWAS) using the factored spectrally transformed linear mixed models (FaST-LMM). For most accessions, the growth of seedlings was found to be inhibited under heat stress. Analysis of the phenotypic data revealed that under heat stress conditions, the main root length, total root length, and shoot length of seedlings decreased by 47.46%, 49.29%, and 15.19%, respectively, compared to those in normal conditions. However, 17 varieties were identified as heat stress tolerant germplasm. Through GWAS analysis, a total of 115 QTLs were detected under both heat stress and normal conditions. Furthermore, 15 stable QTL-clusters associated with heat response were identified. By combining gene expression, haplotype analysis, and gene annotation information within the physical intervals of the 15 QTL-clusters, two novel candidate genes, TraesCS4B03G0152700/TaWRKY74-B and TraesCS4B03G0501400/TaSnRK3.15-B, were responsive to temperature and identified as potential regulators of HST in wheat at the seedling stage. CONCLUSIONS This study conducted a detailed genetic analysis and successfully identified two genes potentially associated with HST in wheat at the seedling stage, laying a foundation to further dissect the regulatory mechanism underlying HST in wheat under high temperature conditions. Our finding could serve as genomic landmarks for wheat breeding aimed at improving adaptation to heat stress in the face of climate change.
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Affiliation(s)
- Chao Fu
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China
| | - Ying Zhou
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China
| | - Ankui Liu
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China
| | - Rui Chen
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China
| | - Li Yin
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China
| | - Cong Li
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China
| | - Hailiang Mao
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China.
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Lama S, Leiva F, Vallenback P, Chawade A, Kuktaite R. Impacts of heat, drought, and combined heat-drought stress on yield, phenotypic traits, and gluten protein traits: capturing stability of spring wheat in excessive environments. FRONTIERS IN PLANT SCIENCE 2023; 14:1179701. [PMID: 37275246 PMCID: PMC10235758 DOI: 10.3389/fpls.2023.1179701] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/04/2023] [Accepted: 04/17/2023] [Indexed: 06/07/2023]
Abstract
Wheat production and end-use quality are severely threatened by drought and heat stresses. This study evaluated stress impacts on phenotypic and gluten protein characteristics of eight spring wheat genotypes (Diskett, Happy, Bumble, SW1, SW2, SW3, SW4, and SW5) grown to maturity under controlled conditions (Biotron) using RGB imaging and size-exclusion high-performance liquid chromatography (SE-HPLC). Among the stress treatments compared, combined heat-drought stress had the most severe negative impacts on biomass (real and digital), grain yield, and thousand kernel weight. Conversely, it had a positive effect on most gluten parameters evaluated by SE-HPLC and resulted in a positive correlation between spike traits and gluten strength, expressed as unextractable gluten polymer (%UPP) and large monomeric protein (%LUMP). The best performing genotypes in terms of stability were Happy, Diskett, SW1, and SW2, which should be further explored as attractive breeding material for developing climate-resistant genotypes with improved bread-making quality. RGB imaging in combination with gluten protein screening by SE-HPLC could thus be a valuable approach for identifying climate stress-tolerant wheat genotypes.
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Affiliation(s)
- Sbatie Lama
- Department of Plant Breeding, Swedish University of Agricultural Sciences, Lomma, Sweden
| | - Fernanda Leiva
- Department of Plant Breeding, Swedish University of Agricultural Sciences, Lomma, Sweden
| | | | - Aakash Chawade
- Department of Plant Breeding, Swedish University of Agricultural Sciences, Lomma, Sweden
| | - Ramune Kuktaite
- Department of Plant Breeding, Swedish University of Agricultural Sciences, Lomma, Sweden
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Wang X, Liu Y, Hao C, Li T, Majeed U, Liu H, Li H, Hou J, Zhang X. Wheat NAC-A18 regulates grain starch and storage proteins synthesis and affects grain weight. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2023; 136:123. [PMID: 37147554 DOI: 10.1007/s00122-023-04365-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Accepted: 04/14/2023] [Indexed: 05/07/2023]
Abstract
KEY MESSAGE Wheat NAC-A18 regulates both starch and storage protein synthesis in the grain, and a haplotype with positive effects on grain weight showed increased frequency during wheat breeding in China. Starch and seed storage protein (SSP) directly affect the processing quality of wheat grain. The synthesis of starch and SSP are also regulated at the transcriptional level. However, only a few starch and SSP regulators have been identified in wheat. In this study, we discovered a NAC transcription factor, designated as NAC-A18, which acts as a regulator of both starch and SSP synthesis. NAC-A18, is predominately expressed in wheat developing grains, encodes a transcription factor localized in the nucleus, with both activation and repression domains. Ectopic expression of wheat NAC-A18 in rice significantly decreased starch accumulation and increased SSP accumulation and grain size and weight. Dual-luciferase reporter assays indicated that NAC-A18 could reduce the expression of TaGBSSI-A1 and TaGBSSI-A2, and enhance the expression of TaLMW-D6 and TaLMW-D1. A yeast one hybrid assay demonstrated that NAC-A18 bound directly to the cis-element "ACGCAA" in the promoters of TaLMW-D6 and TaLMW-D1. Further analysis indicated that two haplotypes were formed at NAC-A18, and that NAC-A18_h1 was a favorable haplotype correlated with higher thousand grain weight. Based on limited population data, NAC-A18_h1 underwent positive selection during Chinese wheat breeding. Our study demonstrates that wheat NAC-A18 regulates starch and SSP accumulation and grain size. A molecular marker was developed for the favorable allele for breeding applications.
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Affiliation(s)
- Xiaolu Wang
- Key Laboratory of Crop Gene Resources and Germplasm Enhancement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Yunchuan Liu
- Key Laboratory of Crop Gene Resources and Germplasm Enhancement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Chenyang Hao
- Key Laboratory of Crop Gene Resources and Germplasm Enhancement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Tian Li
- Key Laboratory of Crop Gene Resources and Germplasm Enhancement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Uzma Majeed
- Key Laboratory of Crop Gene Resources and Germplasm Enhancement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Hongxia Liu
- Key Laboratory of Crop Gene Resources and Germplasm Enhancement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Huifang Li
- Key Laboratory of Crop Gene Resources and Germplasm Enhancement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Jian Hou
- Key Laboratory of Crop Gene Resources and Germplasm Enhancement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
| | - Xueyong Zhang
- Key Laboratory of Crop Gene Resources and Germplasm Enhancement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
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Sehgal D, Dhakate P, Ambreen H, Shaik KHB, Rathan ND, Anusha NM, Deshmukh R, Vikram P. Wheat Omics: Advancements and Opportunities. PLANTS (BASEL, SWITZERLAND) 2023; 12:426. [PMID: 36771512 PMCID: PMC9919419 DOI: 10.3390/plants12030426] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/29/2022] [Revised: 12/07/2022] [Accepted: 12/14/2022] [Indexed: 06/18/2023]
Abstract
Plant omics, which includes genomics, transcriptomics, metabolomics and proteomics, has played a remarkable role in the discovery of new genes and biomolecules that can be deployed for crop improvement. In wheat, great insights have been gleaned from the utilization of diverse omics approaches for both qualitative and quantitative traits. Especially, a combination of omics approaches has led to significant advances in gene discovery and pathway investigations and in deciphering the essential components of stress responses and yields. Recently, a Wheat Omics database has been developed for wheat which could be used by scientists for further accelerating functional genomics studies. In this review, we have discussed various omics technologies and platforms that have been used in wheat to enhance the understanding of the stress biology of the crop and the molecular mechanisms underlying stress tolerance.
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Affiliation(s)
- Deepmala Sehgal
- International Maize and Wheat Improvement Center (CIMMYT), El Batán, Texcoco 56237, Mexico
- Syngenta, Jealott’s Hill International Research Centre, Bracknell, Berkshire RG42 6EY, UK
| | - Priyanka Dhakate
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110076, India
| | - Heena Ambreen
- School of Life Sciences, University of Sussex, Brighton BN1 9RH, UK
| | - Khasim Hussain Baji Shaik
- Faculty of Agriculture Sciences, Georg-August-Universität, Wilhelmsplatz 1, 37073 Göttingen, Germany
| | - Nagenahalli Dharmegowda Rathan
- Indian Agricultural Research Institute (ICAR-IARI), New Delhi 110012, India
- Corteva Agriscience, Hyderabad 502336, Telangana, India
| | | | - Rupesh Deshmukh
- Department of Biotechnology, Central University of Haryana, Mahendragarh 123031, Haryana, India
| | - Prashant Vikram
- Bioseed Research India Ltd., Hyderabad 5023324, Telangana, India
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Liu H, Su Y, Fan Y, Zuo D, Xu J, Liu Y, Mei X, Huang H, Yang M, Zhu S. Exogenous leucine alleviates heat stress and improves saponin synthesis in Panax notoginseng by improving antioxidant capacity and maintaining metabolic homeostasis. FRONTIERS IN PLANT SCIENCE 2023; 14:1175878. [PMID: 37152124 PMCID: PMC10154563 DOI: 10.3389/fpls.2023.1175878] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Accepted: 04/03/2023] [Indexed: 05/09/2023]
Abstract
Panax notoginseng saponins (PNSs) are used as industrial raw materials to produce many drugs to treat cardio-cerebrovascular diseases. However, it is a heat-sensitive plant, and its large-scale artificial cultivation is impeded by high temperature stress, leading to decreases in productivity and PNSs yield. Here, we examined exogenous foliar leucine to alleviate heat stress and explored the underlying mechanism using metabolomics. The results indicated that 3 and 5 mM exogenous foliar leucine significantly alleviated heat stress in one-year- and two-year-old P. notoginseng in pots and field trials. Exogenous foliar leucine enhanced the antioxidant capacity by increasing the activities of antioxidant enzymes (POD, SOD) and the contents of antioxidant metabolites (amino acids). Moreover, exogenous foliar leucine enhanced carbohydrate metabolism, including sugars (sucrose, maltose) and TCA cycle metabolites (citric acid, aconitic acid, succinic acid and fumaric acid), in P. notoginseng leaves, stems, and fibrous roots to improve the energy supply of plants and further alleviate heat stress. Field experiments further verified that exogenous foliar leucine increased the productivity and PNSs accumulation in P. notoginseng. These results suggest that leucine application is beneficial for improving the growth and quality of P. notoginseng under heat stress. It is therefore possible to develop plant growth regulators based on leucine to improve the heat resistance of P. notoginseng and other crops.
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Affiliation(s)
- Haijiao Liu
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China
- Key Laboratory for Agro-Biodiversity and Pest Control of Ministry of Education, Yunnan Agricultural University, Kunming, China
| | - Yingwei Su
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China
- Key Laboratory for Agro-Biodiversity and Pest Control of Ministry of Education, Yunnan Agricultural University, Kunming, China
| | - Yunxia Fan
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China
- Key Laboratory for Agro-Biodiversity and Pest Control of Ministry of Education, Yunnan Agricultural University, Kunming, China
| | - Denghong Zuo
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China
- Key Laboratory for Agro-Biodiversity and Pest Control of Ministry of Education, Yunnan Agricultural University, Kunming, China
| | - Jie Xu
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China
- Key Laboratory for Agro-Biodiversity and Pest Control of Ministry of Education, Yunnan Agricultural University, Kunming, China
| | - Yixiang Liu
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China
- Key Laboratory for Agro-Biodiversity and Pest Control of Ministry of Education, Yunnan Agricultural University, Kunming, China
| | - Xinyue Mei
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China
- Key Laboratory for Agro-Biodiversity and Pest Control of Ministry of Education, Yunnan Agricultural University, Kunming, China
| | - Huichuan Huang
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China
- Key Laboratory for Agro-Biodiversity and Pest Control of Ministry of Education, Yunnan Agricultural University, Kunming, China
| | - Min Yang
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China
- Key Laboratory for Agro-Biodiversity and Pest Control of Ministry of Education, Yunnan Agricultural University, Kunming, China
- *Correspondence: Shusheng Zhu, ; Min Yang,
| | - Shusheng Zhu
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China
- Key Laboratory for Agro-Biodiversity and Pest Control of Ministry of Education, Yunnan Agricultural University, Kunming, China
- *Correspondence: Shusheng Zhu, ; Min Yang,
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8
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Zhu F, Sun Y, Jadhav SS, Cheng Y, Alseekh S, Fernie AR. The Plant Metabolic Changes and the Physiological and Signaling Functions in the Responses to Abiotic Stress. Methods Mol Biol 2023; 2642:129-150. [PMID: 36944876 DOI: 10.1007/978-1-0716-3044-0_7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/23/2023]
Abstract
Global climate change has altered, and will further alter, rainfall patterns and temperatures likely causing more frequent drought and heat waves, which will consequently exacerbate abiotic stresses of plants and significantly decrease the yield and quality of crops. On the one hand, the global demand for food is ever-increasing owing to the rapid increase of the human population. On the other hand, metabolic responses are one of the most important mechanisms by which plants adapt to and survive to abiotic stresses. Here we therefore summarize recent progresses including the plant primary and secondary metabolic responses to abiotic stresses and their function in plant resistance acting as antioxidants, osmoregulatory, and signaling factors, which enrich our knowledge concerning commonalities of plant metabolic responses to abiotic stresses, including their involvement in signaling processes. Finally, we discuss potential methods of metabolic fortification of crops in order to improve their abiotic stress tolerance.
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Affiliation(s)
- Feng Zhu
- National R&D Center for Citrus Preservation, Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, China
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Yuming Sun
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
- Jiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, China
| | - Sagar Sudam Jadhav
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Yunjiang Cheng
- National R&D Center for Citrus Preservation, Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, China
| | - Saleh Alseekh
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
- Center of Plant Systems Biology and Biotechnology, Plovdiv, Bulgaria
| | - Alisdair R Fernie
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany.
- Center of Plant Systems Biology and Biotechnology, Plovdiv, Bulgaria.
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9
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Megahed EMA, Awaad HA, Ramadan IE, Abdul-Hamid MIE, Sweelam AA, El-Naggar DR, Mansour E. Assessing performance and stability of yellow rust resistance, heat tolerance, and agronomic performance in diverse bread wheat genotypes for enhancing resilience to climate change under Egyptian conditions. FRONTIERS IN PLANT SCIENCE 2022; 13:1014824. [PMID: 36438087 PMCID: PMC9686012 DOI: 10.3389/fpls.2022.1014824] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/09/2022] [Accepted: 09/26/2022] [Indexed: 06/16/2023]
Abstract
Yellow rust and heat stress adversatively impact the growth and production of bread wheat in particular under rising adverse environmental conditions. Stability of grain yield is a pivotal purpose of plant breeders to improve wheat production and ensure global food security especially under abrupt climate change. The objective of this study was to assess the performance and stability of diverse bread wheat genotypes for yellow rust resistance, heat stress, and yield traits. The studied genotypes were evaluated in two different locations under two sowing dates (timely and late sowing) during two growing seasons. The obtained results displayed significant differences among the tested locations, sowing dates, and genotypes for most measured traits. The yellow rust measurements evaluated under the field conditions including final rust severity (FRS), the average coefficient of infection (ACI), and area under disease progress curve (AUDPC) revealed that Giza-171, Misr-1, Gemmeiza-12, Shandweel-1, Sids-13, Line-1, Line-2, and Line-55 had better resistance. Based on heat sensitivity measurements, Line-1 and Line-2 followed by Line-35, Shandweel-1 and Line-55 were classified as more tolerant to heat stress compared with the remaining genotypes. The genotypes Line-55, Gemmeiza-12, Giza-171, Line-1, Line-2, and Misr-1 were able to maintain acceptable agronomic performance under timely and late sowing dates in all evaluated environments. Different statistical procedures were employed to explore the adaptability and stability of tested genotypes i.e., joint regression, stratified ranking, Wricke's Ecovalence values, cultivar superiority, additive main effects, and multiplicative interaction (AMMI), AMMI stability value, and genotype plus genotype-by-environment interaction (GGE). The applied stability parameters were quite similar for describing the stability of the evaluated wheat genotypes. The results indicated that Gemmeiza-12, Giza-171, Sids-12, Sids-13, Misr-1 Shandweel-1, Line-1, Line-2, and Line-55 were desirable and stable. The heatmap and hierarchical clustering were exploited for dividing the evaluated bread wheat genotypes into different clusters based on yellow rust resistance measurements, heat tolerance indices, and agronomic performance. Line-1 and Line-2 had the best performance for all rust resistance, heat tolerance, and agronomic performance followed by Giza-171, Line-55, Line-35, Gemmeiza-12, Shandweel-1, Misr-1, and Sids-13. In conclusion, our findings provide evidence of utilizing promising genotypes in rust resistance, heat tolerance, and agronomic performance in breeding programs for improving wheat grain yield stability mainly under climate change.
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Affiliation(s)
- Eman M. A. Megahed
- Wheat Research Department, Field Crops Research Institute, Agricultural Research Center, Giza, Egypt
| | - Hassan A. Awaad
- Department of Crop Science, Faculty of Agriculture, Zagazig University, Zagazig, Egypt
| | - Ismail E. Ramadan
- Department of Crop Science, Faculty of Agriculture, Zagazig University, Zagazig, Egypt
| | | | - Abdallah A. Sweelam
- Wheat Research Department, Field Crops Research Institute, Agricultural Research Center, Giza, Egypt
| | - Doaa R. El-Naggar
- Wheat Disease Department, Plant Pathology Research Institute, Agricultural Research Center, Giza, Egypt
| | - Elsayed Mansour
- Department of Crop Science, Faculty of Agriculture, Zagazig University, Zagazig, Egypt
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10
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Guo J, Qu L, Wei Q, Lu D. Effects of post-silking low temperature on the starch and protein metabolism, endogenous hormone contents, and quality of grains in waxy maize. FRONTIERS IN PLANT SCIENCE 2022; 13:988172. [PMID: 36407592 PMCID: PMC9673756 DOI: 10.3389/fpls.2022.988172] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/07/2022] [Accepted: 10/20/2022] [Indexed: 06/16/2023]
Abstract
Waxy maize has many excellent characteristics in food and nonfood industries. However, post-silking low temperature (LT) has severe limitations on its grain yield and quality. In this study, field and pot trials were conducted to investigate the effects of post-silking LT on the physiological, biochemical, and functional characteristics of two waxy maize grains. The field and pot trials were performed with sowing date and artificial climate chamber, respectively, for LT treatment from silking stage to maturity. Results in pot trial were used to explain and validate the findings in field trial. Compared with the ambient treatment, the LT treatment significantly reduced kernel weight during the grain filling stage (P < 0.05). LT treatment in both environments resulted in an average decrease in dry weight of SYN5 and YN7 at maturity by 36.6% and 42.8%, respectively. Enzymatic activities related to starch and protein biosynthesis decreased under the LT treatment during the filling stage, accompanied by a decrease in the accumulation amounts and contents of soluble sugar and starch, and a decrease in protein accumulation amount. Meanwhile, the contents of abscisic acid, indole-3-acetic acid, and gibberellin 3 in grains decreased under the LT treatment during the filling stage. Peak, trough, breakdown, final, and setback viscosities of grains decreased by LT. LT treatment decreased the gelatinization enthalpy of grains and increased the retrogradation percentage. In conclusion, post-silking LT stress altered the content of grain components by inhibiting the production of phytohormones and down-regulating the enzymatic activities involved in starch and protein metabolism, which resulted in the deterioration of grain pasting and thermal properties.
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Affiliation(s)
- Jian Guo
- Jiangsu Key Laboratory of Crop Genetics and Physiology/Jiangsu Key Laboratory of Crop Cultivation and Physiology/Agricultural College, Yangzhou University, Yangzhou, China
- Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou, China
| | - Lingling Qu
- Jiangsu Key Laboratory of Crop Genetics and Physiology/Jiangsu Key Laboratory of Crop Cultivation and Physiology/Agricultural College, Yangzhou University, Yangzhou, China
| | - Qi Wei
- Jiangsu Key Laboratory of Crop Genetics and Physiology/Jiangsu Key Laboratory of Crop Cultivation and Physiology/Agricultural College, Yangzhou University, Yangzhou, China
| | - Dalei Lu
- Jiangsu Key Laboratory of Crop Genetics and Physiology/Jiangsu Key Laboratory of Crop Cultivation and Physiology/Agricultural College, Yangzhou University, Yangzhou, China
- Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou, China
- Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education, Yangzhou University, Yangzhou, China
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11
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Tomás D, Viegas W, Silva M. Grain Transcriptome Dynamics Induced by Heat in Commercial and Traditional Bread Wheat Genotypes. FRONTIERS IN PLANT SCIENCE 2022; 13:842599. [PMID: 35783979 PMCID: PMC9248373 DOI: 10.3389/fpls.2022.842599] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/23/2021] [Accepted: 05/16/2022] [Indexed: 06/15/2023]
Abstract
High temperature (HT) events have negative impact on wheat grains yield and quality. Transcriptome profiles of wheat developing grains of commercial genotypes (Antequera and Bancal) and landraces (Ardito and Magueija) submitted to heatwave-like treatments during grain filling were evaluated. Landraces showed significantly more differentially expressed genes (DEGs) and presented more similar responses than commercial genotypes. DEGs were more associated with transcription and RNA and protein synthesis in Antequera and with metabolism alterations in Bancal and landraces. Landraces upregulated genes encoding proteins already described as HT responsive, like heat shock proteins and cupins. Apart from the genes encoding HSP, two other genes were upregulated in all genotypes, one encoding for Adenylate kinase, essential for the cellular homeostasis, and the other for ferritin, recently related with increased tolerance to several abiotic stress in Arabidopsis. Moreover, a NAC transcription factor involved in plant development, known to be a negative regulator of starch synthesis and grain yield, was found to be upregulated in both commercial varieties and downregulated in Magueija landrace. The detected diversity of molecular processes involved in heat response of commercial and traditional genotypes contribute to understand the importance of genetic diversity and relevant pathways to cope with these extreme events.
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12
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Wheat Proteomics for Abiotic Stress Tolerance and Root System Architecture: Current Status and Future Prospects. Proteomes 2022; 10:proteomes10020017. [PMID: 35645375 PMCID: PMC9150004 DOI: 10.3390/proteomes10020017] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2022] [Revised: 05/03/2022] [Accepted: 05/11/2022] [Indexed: 02/06/2023] Open
Abstract
Wheat is an important staple cereal for global food security. However, climate change is hampering wheat production due to abiotic stresses, such as heat, salinity, and drought. Besides shoot architectural traits, improving root system architecture (RSA) traits have the potential to improve yields under normal and stressed environments. RSA growth and development and other stress responses involve the expression of proteins encoded by the trait controlling gene/genes. Hence, mining the key proteins associated with abiotic stress responses and RSA is important for improving sustainable yields in wheat. Proteomic studies in wheat started in the early 21st century using the two-dimensional (2-DE) gel technique and have extensively improved over time with advancements in mass spectrometry. The availability of the wheat reference genome has allowed the exploration of proteomics to identify differentially expressed or abundant proteins (DEPs or DAPs) for abiotic stress tolerance and RSA improvement. Proteomics contributed significantly to identifying key proteins imparting abiotic stress tolerance, primarily related to photosynthesis, protein synthesis, carbon metabolism, redox homeostasis, defense response, energy metabolism and signal transduction. However, the use of proteomics to improve RSA traits in wheat is in its infancy. Proteins related to cell wall biogenesis, carbohydrate metabolism, brassinosteroid biosynthesis, and transportation are involved in the growth and development of several RSA traits. This review covers advances in quantification techniques of proteomics, progress in identifying DEPs and/or DAPs for heat, salinity, and drought stresses, and RSA traits, and the limitations and future directions for harnessing proteomics in wheat improvement.
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Zhou R, Jiang F, Niu L, Song X, Yu L, Yang Y, Wu Z. Increase Crop Resilience to Heat Stress Using Omic Strategies. FRONTIERS IN PLANT SCIENCE 2022; 13:891861. [PMID: 35656008 PMCID: PMC9152541 DOI: 10.3389/fpls.2022.891861] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/11/2022] [Accepted: 04/04/2022] [Indexed: 06/15/2023]
Abstract
Varieties of various crops with high resilience are urgently needed to feed the increased population in climate change conditions. Human activities and climate change have led to frequent and strong weather fluctuation, which cause various abiotic stresses to crops. The understanding of crops' responses to abiotic stresses in different aspects including genes, RNAs, proteins, metabolites, and phenotypes can facilitate crop breeding. Using multi-omics methods, mainly genomics, transcriptomics, proteomics, metabolomics, and phenomics, to study crops' responses to abiotic stresses will generate a better, deeper, and more comprehensive understanding. More importantly, multi-omics can provide multiple layers of information on biological data to understand plant biology, which will open windows for new opportunities to improve crop resilience and tolerance. However, the opportunities and challenges coexist. Interpretation of the multidimensional data from multi-omics and translation of the data into biological meaningful context remained a challenge. More reasonable experimental designs starting from sowing seed, cultivating the plant, and collecting and extracting samples were necessary for a multi-omics study as the first step. The normalization, transformation, and scaling of single-omics data should consider the integration of multi-omics. This review reports the current study of crops at abiotic stresses in particular heat stress using omics, which will help to accelerate crop improvement to better tolerate and adapt to climate change.
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Affiliation(s)
- Rong Zhou
- College of Horticulture, Nanjing Agricultural University, Nanjing, China
- Department of Food Science, Aarhus University, Aarhus, Denmark
| | - Fangling Jiang
- College of Horticulture, Nanjing Agricultural University, Nanjing, China
| | - Lifei Niu
- College of Horticulture, Nanjing Agricultural University, Nanjing, China
| | - Xiaoming Song
- College of Life Sciences, North China University of Science and Technology, Tangshan, China
| | - Lu Yu
- College of Horticulture, Nanjing Agricultural University, Nanjing, China
| | - Yuwen Yang
- Excellence and Innovation Center, Jiangsu Academy of Agricultural Sciences, Nanjing, China
| | - Zhen Wu
- College of Horticulture, Nanjing Agricultural University, Nanjing, China
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Yadav MR, Choudhary M, Singh J, Lal MK, Jha PK, Udawat P, Gupta NK, Rajput VD, Garg NK, Maheshwari C, Hasan M, Gupta S, Jatwa TK, Kumar R, Yadav AK, Prasad PVV. Impacts, Tolerance, Adaptation, and Mitigation of Heat Stress on Wheat under Changing Climates. Int J Mol Sci 2022; 23:2838. [PMID: 35269980 PMCID: PMC8911405 DOI: 10.3390/ijms23052838] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2021] [Revised: 02/21/2022] [Accepted: 02/25/2022] [Indexed: 12/14/2022] Open
Abstract
Heat stress (HS) is one of the major abiotic stresses affecting the production and quality of wheat. Rising temperatures are particularly threatening to wheat production. A detailed overview of morpho-physio-biochemical responses of wheat to HS is critical to identify various tolerance mechanisms and their use in identifying strategies to safeguard wheat production under changing climates. The development of thermotolerant wheat cultivars using conventional or molecular breeding and transgenic approaches is promising. Over the last decade, different omics approaches have revolutionized the way plant breeders and biotechnologists investigate underlying stress tolerance mechanisms and cellular homeostasis. Therefore, developing genomics, transcriptomics, proteomics, and metabolomics data sets and a deeper understanding of HS tolerance mechanisms of different wheat cultivars are needed. The most reliable method to improve plant resilience to HS must include agronomic management strategies, such as the adoption of climate-smart cultivation practices and use of osmoprotectants and cultured soil microbes. However, looking at the complex nature of HS, the adoption of a holistic approach integrating outcomes of breeding, physiological, agronomical, and biotechnological options is required. Our review aims to provide insights concerning morpho-physiological and molecular impacts, tolerance mechanisms, and adaptation strategies of HS in wheat. This review will help scientific communities in the identification, development, and promotion of thermotolerant wheat cultivars and management strategies to minimize negative impacts of HS.
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Affiliation(s)
- Malu Ram Yadav
- Division of Agronomy, Rajasthan Agricultural Research Institute, Sri Karan Narendra Agriculture University, Jobner, Jaipur 303329, India; (M.R.Y.); (J.S.); (N.K.G.); (N.K.G.); (S.G.); (T.K.J.); (A.K.Y.)
| | - Mukesh Choudhary
- School of Agriculture and Environment, The University of Western Australia, Perth 6009, Australia;
| | - Jogendra Singh
- Division of Agronomy, Rajasthan Agricultural Research Institute, Sri Karan Narendra Agriculture University, Jobner, Jaipur 303329, India; (M.R.Y.); (J.S.); (N.K.G.); (N.K.G.); (S.G.); (T.K.J.); (A.K.Y.)
| | - Milan Kumar Lal
- Division of Crop Physiology, Biochemistry and Post-Harvest Technology, Indian Council of Agricultural Research (ICAR)-Central Potato Research Institute, Shimla 171001, India;
| | - Prakash Kumar Jha
- Feed the Future Innovation Lab for Collaborative Research on Sustainable Intensification, Kansas State University, Manhattan, KS 66506, USA;
| | - Pushpika Udawat
- Janardan Rai Nagar Rajasthan Vidyapeeth, Udaipur 313001, India;
| | - Narendra Kumar Gupta
- Division of Agronomy, Rajasthan Agricultural Research Institute, Sri Karan Narendra Agriculture University, Jobner, Jaipur 303329, India; (M.R.Y.); (J.S.); (N.K.G.); (N.K.G.); (S.G.); (T.K.J.); (A.K.Y.)
| | - Vishnu D. Rajput
- Academy of Biology and Biotechnology, Southern Federal University, 344090 Rostov-on-Don, Russia;
| | - Nitin Kumar Garg
- Division of Agronomy, Rajasthan Agricultural Research Institute, Sri Karan Narendra Agriculture University, Jobner, Jaipur 303329, India; (M.R.Y.); (J.S.); (N.K.G.); (N.K.G.); (S.G.); (T.K.J.); (A.K.Y.)
| | - Chirag Maheshwari
- Division of Biochemistry, Indian Council of Agricultural Research, Indian Agricultural Research Institute, New Delhi 110012, India;
| | - Muzaffar Hasan
- Division of Agro Produce Processing, Central Institute of Agricultural Engineering, Bhopal 462038, India;
| | - Sunita Gupta
- Division of Agronomy, Rajasthan Agricultural Research Institute, Sri Karan Narendra Agriculture University, Jobner, Jaipur 303329, India; (M.R.Y.); (J.S.); (N.K.G.); (N.K.G.); (S.G.); (T.K.J.); (A.K.Y.)
| | - Tarun Kumar Jatwa
- Division of Agronomy, Rajasthan Agricultural Research Institute, Sri Karan Narendra Agriculture University, Jobner, Jaipur 303329, India; (M.R.Y.); (J.S.); (N.K.G.); (N.K.G.); (S.G.); (T.K.J.); (A.K.Y.)
| | - Rakesh Kumar
- Division of Agronomy, Indian Council of Agricultural Research, National Dairy Research Institute, Karnal 132001, India;
| | - Arvind Kumar Yadav
- Division of Agronomy, Rajasthan Agricultural Research Institute, Sri Karan Narendra Agriculture University, Jobner, Jaipur 303329, India; (M.R.Y.); (J.S.); (N.K.G.); (N.K.G.); (S.G.); (T.K.J.); (A.K.Y.)
| | - P. V. Vara Prasad
- Feed the Future Innovation Lab for Collaborative Research on Sustainable Intensification, Kansas State University, Manhattan, KS 66506, USA;
- Department of Agronomy, Kansas State University, Manhattan, KS 66506, USA
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15
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Raza A. Metabolomics: a systems biology approach for enhancing heat stress tolerance in plants. PLANT CELL REPORTS 2022; 41:741-763. [PMID: 33251564 DOI: 10.1007/s00299-020-02635-8] [Citation(s) in RCA: 65] [Impact Index Per Article: 21.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2020] [Accepted: 11/09/2020] [Indexed: 05/22/2023]
Abstract
Comprehensive metabolomic investigations provide a large set of stress-related metabolites and metabolic pathways, advancing crops under heat stress conditions. Metabolomics-assisted breeding, including mQTL and mGWAS boosted our understanding of improving numerous quantitative traits under heat stress. During the past decade, metabolomics has emerged as a fascinating scientific field that includes documentation, evaluation of metabolites, and chemical methods for cell monitoring programs in numerous plant species. A comprehensive metabolome profiling allowed the investigator to handle the comprehensive data groups of metabolites and the equivalent metabolic pathways in an extraordinary manner. Metabolomics, together with transcriptomics, plays an influential role in discovering connections between stress and genes/metabolite, phenotyping, and biomarkers documentation. Further, it helps to decode several metabolic systems connected with heat stress (HS) tolerance in plants. Heat stress is a critical environmental factor that is globally affecting the growth and productivity of plants. Thus, there is an urgent need to exploit modern breeding and biotechnological tools like metabolomics to develop cultivars with improved HS tolerance. Several studies have reported that amino acids, carbohydrates, nitrogen metabolisms, etc. and metabolites involved in the biosynthesis and catalyzing actions play a game-changing role in HS response and help plants to cope with the HS. The use of metabolomics-assisted breeding (MAB) allows a well-organized transmission of higher yield and HS tolerance at the metabolome level with specific properties. Progressive metabolomics systematic techniques have accelerated metabolic profiling. Nonetheless, continuous developments in bioinformatics, statistical tools, and databases are allowing us to produce ever-progressing, comprehensive insights into the biochemical configuration of plants and by what means this is inclined by genetic and environmental cues. Currently, assimilating metabolomics with post-genomic platforms has allowed a significant division of genetic-phenotypic connotation in several plant species. This review highlights the potential of a state-of-the-art plant metabolomics approach for the improvement of crops under HS. The development of plants with specific properties using integrated omics (metabolomics and transcriptomics) and MAB can provide new directions for future research to enhance HS tolerance in plants to achieve a goal of "zero hunger".
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Affiliation(s)
- Ali Raza
- Key Lab of Biology and Genetic Improvement of Oil Crops, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences (CAAS), Wuhan, 430062, China.
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16
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Sun L, Wen J, Peng H, Yao Y, Hu Z, Ni Z, Sun Q, Xin M. The genetic and molecular basis for improving heat stress tolerance in wheat. ABIOTECH 2022; 3:25-39. [PMID: 36304198 PMCID: PMC9590529 DOI: 10.1007/s42994-021-00064-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/23/2021] [Accepted: 11/09/2021] [Indexed: 12/04/2022]
Abstract
Wheat production requires at least ~ 2.4% increase per year rate by 2050 globally to meet food demands. However, heat stress results in serious yield loss of wheat worldwide. Correspondingly, wheat has evolved genetic basis and molecular mechanisms to protect themselves from heat-induced damage. Thus, it is very urgent to understand the underlying genetic basis and molecular mechanisms responsive to elevated temperatures to provide important strategies for heat-tolerant varieties breeding. In this review, we focused on the impact of heat stress on morphology variation at adult stage in wheat breeding programs. We also summarize the recent studies of genetic and molecular factors regulating heat tolerance, including identification of heat stress tolerance related QTLs/genes, and the regulation pathway in response to heat stress. In addition, we discuss the potential ways to improve heat tolerance by developing new technologies such as genome editing. This review of wheat responses to heat stress may shed light on the understanding heat-responsive mechanisms, although the regulatory network of heat tolerance is still ambiguous in wheat. Supplementary Information The online version contains supplementary material available at 10.1007/s42994-021-00064-z.
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Affiliation(s)
- Lv Sun
- Key Laboratory of Crop Heterosis Utilization (MOE), China Agricultural University, Beijing, 100193 China
| | - Jingjing Wen
- Key Laboratory of Crop Heterosis Utilization (MOE), China Agricultural University, Beijing, 100193 China
| | - Huiru Peng
- Key Laboratory of Crop Heterosis Utilization (MOE), China Agricultural University, Beijing, 100193 China
| | - Yingyin Yao
- Key Laboratory of Crop Heterosis Utilization (MOE), China Agricultural University, Beijing, 100193 China
| | - Zhaorong Hu
- Key Laboratory of Crop Heterosis Utilization (MOE), China Agricultural University, Beijing, 100193 China
| | - Zhongfu Ni
- Key Laboratory of Crop Heterosis Utilization (MOE), China Agricultural University, Beijing, 100193 China
| | - Qixin Sun
- Key Laboratory of Crop Heterosis Utilization (MOE), China Agricultural University, Beijing, 100193 China
| | - Mingming Xin
- Key Laboratory of Crop Heterosis Utilization (MOE), China Agricultural University, Beijing, 100193 China
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Abstract
On the world stage, the increase in temperatures due to global warming is already a reality that has become one of the main challenges faced by the scientific community. Since agriculture is highly dependent on climatic conditions, it may suffer a great impact in the short term if no measures are taken to adapt and mitigate the agricultural system. Plant responses to abiotic stresses have been the subject of research by numerous groups worldwide. Initially, these studies were concentrated on model plants, and, later, they expanded their studies in several economically important crops such as rice, corn, soybeans, coffee, and others. However, agronomic evaluations for the launching of cultivars and the classical genetic improvement process focus, above all, on productivity, historically leaving factors such as tolerance to abiotic stresses in the background. Considering the importance of the impact that abiotic stresses can have on agriculture in the short term, new strategies are currently being sought and adopted in breeding programs to understand the physiological, biochemical, and molecular responses to environmental disturbances in plants of agronomic interest, thus ensuring the world food security. Moreover, integration of these approaches is bringing new insights on breeding. We will discuss how water deficit, high temperatures, and salinity exert effects on plants.
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18
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Xu Y, Freund DM, Hegeman AD, Cohen JD. Metabolic signatures of Arabidopsis thaliana abiotic stress responses elucidate patterns in stress priming, acclimation, and recovery. STRESS BIOLOGY 2022; 2:11. [PMID: 37676384 PMCID: PMC10441859 DOI: 10.1007/s44154-022-00034-5] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2021] [Accepted: 01/10/2022] [Indexed: 09/08/2023]
Abstract
Temperature, water, and light are three abiotic stress factors that have major influences on plant growth, development, and reproduction. Plants can be primed by a prior mild stress to enhance their resistance to future stress. We used an untargeted metabolomics approach to examine Arabidopsis thaliana 11-day-old seedling's abiotic stress responses including heat (with and without priming), cold (with and without priming), water-deficit and high-light before and after a 2-day-recovery period. Analysis of the physiological phenotypes showed that seedlings with stress treatment resulted in a reduction in fresh weight, hypocotyl and root length but remained viable. Several stress responsive metabolites were identified, confirmed with reference standards, quantified, and clustered. We identified shared and specific stress signatures for cold, heat, water-deficit, and high-light treatments. Central metabolism including amino acid metabolism, sugar metabolism, glycolysis, TCA cycle, GABA shunt, glutathione metabolism, purine metabolism, and urea cycle were found to undergo changes that are fundamentally different, although some shared commonalities in response to different treatments. Large increases in cysteine abundance and decreases in reduced glutathione were observed following multiple stress treatments highlighting the importance of oxidative stress as a general phenomenon in abiotic stress. Large fold increases in low-turnover amino acids and maltose demonstrate the critical role of protein and starch autolysis in early abiotic stress responses.
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Affiliation(s)
- Yuan Xu
- Department of Horticultural Science and the Microbial and Plant Genomics Institute, University of Minnesota, MN, Saint Paul, USA
| | - Dana M Freund
- Department of Horticultural Science and the Microbial and Plant Genomics Institute, University of Minnesota, MN, Saint Paul, USA
| | - Adrian D Hegeman
- Department of Horticultural Science and the Microbial and Plant Genomics Institute, University of Minnesota, MN, Saint Paul, USA.
- Department of Plant and Microbial Biology, University of Minnesota, MN, Saint Paul, USA.
| | - Jerry D Cohen
- Department of Horticultural Science and the Microbial and Plant Genomics Institute, University of Minnesota, MN, Saint Paul, USA
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19
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Arenas-M A, Castillo FM, Godoy D, Canales J, Calderini DF. Transcriptomic and Physiological Response of Durum Wheat Grain to Short-Term Heat Stress during Early Grain Filling. PLANTS (BASEL, SWITZERLAND) 2021; 11:plants11010059. [PMID: 35009063 PMCID: PMC8747107 DOI: 10.3390/plants11010059] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2021] [Revised: 12/15/2021] [Accepted: 12/21/2021] [Indexed: 05/14/2023]
Abstract
In a changing climate, extreme weather events such as heatwaves will be more frequent and could affect grain weight and the quality of crops such as wheat, one of the most significant crops in terms of global food security. In this work, we characterized the response of Triticum turgidum L. spp. durum wheat to short-term heat stress (HS) treatment at transcriptomic and physiological levels during early grain filling in glasshouse experiments. We found a significant reduction in grain weight (23.9%) and grain dimensions from HS treatment. Grain quality was also affected, showing a decrease in starch content (20.8%), in addition to increments in grain protein levels (14.6%), with respect to the control condition. Moreover, RNA-seq analysis of durum wheat grains allowed us to identify 1590 differentially expressed genes related to photosynthesis, response to heat, and carbohydrate metabolic process. A gene regulatory network analysis of HS-responsive genes uncovered novel transcription factors (TFs) controlling the expression of genes involved in abiotic stress response and grain quality, such as a member of the DOF family predicted to regulate glycogen and starch biosynthetic processes in response to HS in grains. In summary, our results provide new insights into the extensive transcriptome reprogramming that occurs during short-term HS in durum wheat grains.
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Affiliation(s)
- Anita Arenas-M
- Institute of Biochemistry and Microbiology, Faculty of Sciences, Universidad Austral de Chile, Valdivia 5110566, Chile; (A.A.-M.); (F.M.C.)
- ANID—Millennium Science Initiative Program-Millennium Institute for Integrative Biology (iBio), Santiago 8331150, Chile
| | - Francisca M. Castillo
- Institute of Biochemistry and Microbiology, Faculty of Sciences, Universidad Austral de Chile, Valdivia 5110566, Chile; (A.A.-M.); (F.M.C.)
- ANID—Millennium Science Initiative Program-Millennium Institute for Integrative Biology (iBio), Santiago 8331150, Chile
| | - Diego Godoy
- Plant Production and Plant Protection Institute, Faculty of Agricultural Sciences, Universidad Austral de Chile, Valdivia 5110566, Chile;
| | - Javier Canales
- Institute of Biochemistry and Microbiology, Faculty of Sciences, Universidad Austral de Chile, Valdivia 5110566, Chile; (A.A.-M.); (F.M.C.)
- ANID—Millennium Science Initiative Program-Millennium Institute for Integrative Biology (iBio), Santiago 8331150, Chile
- Correspondence: (J.C.); (D.F.C.)
| | - Daniel F. Calderini
- Plant Production and Plant Protection Institute, Faculty of Agricultural Sciences, Universidad Austral de Chile, Valdivia 5110566, Chile;
- Correspondence: (J.C.); (D.F.C.)
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Malovichko YV, Shikov AE, Nizhnikov AA, Antonets KS. Temporal Control of Seed Development in Dicots: Molecular Bases, Ecological Impact and Possible Evolutionary Ramifications. Int J Mol Sci 2021; 22:ijms22179252. [PMID: 34502157 PMCID: PMC8430901 DOI: 10.3390/ijms22179252] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2021] [Revised: 08/20/2021] [Accepted: 08/23/2021] [Indexed: 12/21/2022] Open
Abstract
In flowering plants, seeds serve as organs of both propagation and dispersal. The developing seed passes through several consecutive stages, following a conserved general outline. The overall time needed for a seed to develop, however, may vary both within and between plant species, and these temporal developmental properties remain poorly understood. In the present paper, we summarize the existing data for seed development alterations in dicot plants. For genetic mutations, the reported cases were grouped in respect of the key processes distorted in the mutant specimens. Similar phenotypes arising from the environmental influence, either biotic or abiotic, were also considered. Based on these data, we suggest several general trends of timing alterations and how respective mechanisms might add to the ecological plasticity of the families considered. We also propose that the developmental timing alterations may be perceived as an evolutionary substrate for heterochronic events. Given the current lack of plausible models describing timing control in plant seeds, the presented suggestions might provide certain insights for future studies in this field.
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Affiliation(s)
- Yury V. Malovichko
- Laboratory for Proteomics of Supra-Organismal Systems, All-Russia Research Institute for Agricultural Microbiology (ARRIAM), 196608 St. Petersburg, Russia; (Y.V.M.); (A.E.S.); (A.A.N.)
- Faculty of Biology, St. Petersburg State University, 199034 St. Petersburg, Russia
| | - Anton E. Shikov
- Laboratory for Proteomics of Supra-Organismal Systems, All-Russia Research Institute for Agricultural Microbiology (ARRIAM), 196608 St. Petersburg, Russia; (Y.V.M.); (A.E.S.); (A.A.N.)
- Faculty of Biology, St. Petersburg State University, 199034 St. Petersburg, Russia
| | - Anton A. Nizhnikov
- Laboratory for Proteomics of Supra-Organismal Systems, All-Russia Research Institute for Agricultural Microbiology (ARRIAM), 196608 St. Petersburg, Russia; (Y.V.M.); (A.E.S.); (A.A.N.)
- Faculty of Biology, St. Petersburg State University, 199034 St. Petersburg, Russia
| | - Kirill S. Antonets
- Laboratory for Proteomics of Supra-Organismal Systems, All-Russia Research Institute for Agricultural Microbiology (ARRIAM), 196608 St. Petersburg, Russia; (Y.V.M.); (A.E.S.); (A.A.N.)
- Faculty of Biology, St. Petersburg State University, 199034 St. Petersburg, Russia
- Correspondence:
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21
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Characterization and Expression Analyses of Callose Synthase Enzyme (Cals) Family Genes in Maize (Zea mays L.). Biochem Genet 2021; 60:351-369. [PMID: 34224040 DOI: 10.1007/s10528-021-10103-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2021] [Accepted: 06/19/2021] [Indexed: 10/20/2022]
Abstract
The callose synthase enzyme genes (Cals) generally plays an important role in resisting to environmental stresses as well as in regulating the microspore development of higher plant. However till now, few researches about ZmCals genes have been reported in maize. In this study, ten ZmCals genes were identified, and they are distributed on four chromosomes in maize. All ZmCals proteins contain Glucan-synthase-domain and Fks1-domain. RNA-seq data from public databases were analyzed and the result suggested that ZmCals involved in the development of various tissues, and a strong expression presented especially in young tissue. qRT-PCR analysis shown that most of ZmCals are highly expressed in root, stem and leaf at jointing stage (V6 stage) with maize inbred line B73. Seven out of 10 ZmCals genes display higher expression during maize anther development especially from stage 6 to stage 8b, the dynamic accumulation process of callose is also observed during these period with aniline blue staining. Above results indicated multiple ZmCals may participate in the deposition of callose in maize anther. Therefore, ZmCals are necessary not only for reproductive organ but also for nutritive organ during maize growth and development. This study lays certain foundation for further investigating the roles of the callose synthase enzymes genes in maize.
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22
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Urrutia M, Blein‐Nicolas M, Prigent S, Bernillon S, Deborde C, Balliau T, Maucourt M, Jacob D, Ballias P, Bénard C, Sellier H, Gibon Y, Giauffret C, Zivy M, Moing A. Maize metabolome and proteome responses to controlled cold stress partly mimic early-sowing effects in the field and differ from those of Arabidopsis. PLANT, CELL & ENVIRONMENT 2021; 44:1504-1521. [PMID: 33410508 PMCID: PMC8248070 DOI: 10.1111/pce.13993] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2020] [Accepted: 12/31/2020] [Indexed: 05/21/2023]
Abstract
In Northern Europe, sowing maize one-month earlier than current agricultural practices may lead to moderate chilling damage. However, studies of the metabolic responses to low, non-freezing, temperatures remain scarce. Here, genetically-diverse maize hybrids (Zea mays, dent inbred lines crossed with a flint inbred line) were cultivated in a growth chamber at optimal temperature and then three decreasing temperatures for 2 days each, as well as in the field. Leaf metabolomic and proteomic profiles were determined. In the growth chamber, 50% of metabolites and 18% of proteins changed between 20 and 16°C. These maize responses, partly differing from those of Arabidopsis to short-term chilling, were mapped on genome-wide metabolic maps. Several metabolites and proteins showed similar variation for all temperature decreases: seven MS-based metabolite signatures and two proteins involved in photosynthesis decreased continuously. Several increasing metabolites or proteins in the growth-chamber chilling conditions showed similar trends in the early-sowing field experiment, including trans-aconitate, three hydroxycinnamate derivatives, a benzoxazinoid, a sucrose synthase, lethal leaf-spot 1 protein, an allene oxide synthase, several glutathione transferases and peroxidases. Hybrid groups based on field biomass were used to search for the metabolite or protein responses differentiating them in growth-chamber conditions, which could be of interest for breeding.
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Affiliation(s)
- Maria Urrutia
- Biologie du Fruit et Pathologie, UMR 1332, Centre INRAE de Nouvelle Aquitaine‐BordeauxINRAE, Univ.Villenave d'OrnonFrance
- Present address:
Dtp. Biología Molecular y BioquímicaUniv. MálagaMálagaSpain
| | - Mélisande Blein‐Nicolas
- INRAE, CNRS, AgroParisTech, GQE‐Le MoulonUniv. Paris‐SaclayGif‐sur‐YvetteFrance
- PAPPSO, doi:10.15454/1.5572393176364355E12, GQE‐Le MoulonGif‐sur‐YvetteFrance
| | - Sylvain Prigent
- Biologie du Fruit et Pathologie, UMR 1332, Centre INRAE de Nouvelle Aquitaine‐BordeauxINRAE, Univ.Villenave d'OrnonFrance
| | - Stéphane Bernillon
- Biologie du Fruit et Pathologie, UMR 1332, Centre INRAE de Nouvelle Aquitaine‐BordeauxINRAE, Univ.Villenave d'OrnonFrance
- PMB‐Metabolome, INRAE, 2018, Bordeaux Metabolome, doi:10.15454/1.5572412770331912E12, MetaboHUB, PHENOME, IBVM, Centre INRAE de Nouvelle Aquitaine‐BordeauxVillenave d'OrnonFrance
| | - Catherine Deborde
- Biologie du Fruit et Pathologie, UMR 1332, Centre INRAE de Nouvelle Aquitaine‐BordeauxINRAE, Univ.Villenave d'OrnonFrance
- PMB‐Metabolome, INRAE, 2018, Bordeaux Metabolome, doi:10.15454/1.5572412770331912E12, MetaboHUB, PHENOME, IBVM, Centre INRAE de Nouvelle Aquitaine‐BordeauxVillenave d'OrnonFrance
| | - Thierry Balliau
- INRAE, CNRS, AgroParisTech, GQE‐Le MoulonUniv. Paris‐SaclayGif‐sur‐YvetteFrance
- PAPPSO, doi:10.15454/1.5572393176364355E12, GQE‐Le MoulonGif‐sur‐YvetteFrance
| | - Mickaël Maucourt
- Biologie du Fruit et Pathologie, UMR 1332, Centre INRAE de Nouvelle Aquitaine‐BordeauxINRAE, Univ.Villenave d'OrnonFrance
- PMB‐Metabolome, INRAE, 2018, Bordeaux Metabolome, doi:10.15454/1.5572412770331912E12, MetaboHUB, PHENOME, IBVM, Centre INRAE de Nouvelle Aquitaine‐BordeauxVillenave d'OrnonFrance
| | - Daniel Jacob
- Biologie du Fruit et Pathologie, UMR 1332, Centre INRAE de Nouvelle Aquitaine‐BordeauxINRAE, Univ.Villenave d'OrnonFrance
- PMB‐Metabolome, INRAE, 2018, Bordeaux Metabolome, doi:10.15454/1.5572412770331912E12, MetaboHUB, PHENOME, IBVM, Centre INRAE de Nouvelle Aquitaine‐BordeauxVillenave d'OrnonFrance
| | - Patricia Ballias
- Biologie du Fruit et Pathologie, UMR 1332, Centre INRAE de Nouvelle Aquitaine‐BordeauxINRAE, Univ.Villenave d'OrnonFrance
- PMB‐Metabolome, INRAE, 2018, Bordeaux Metabolome, doi:10.15454/1.5572412770331912E12, MetaboHUB, PHENOME, IBVM, Centre INRAE de Nouvelle Aquitaine‐BordeauxVillenave d'OrnonFrance
| | - Camille Bénard
- Biologie du Fruit et Pathologie, UMR 1332, Centre INRAE de Nouvelle Aquitaine‐BordeauxINRAE, Univ.Villenave d'OrnonFrance
- PMB‐Metabolome, INRAE, 2018, Bordeaux Metabolome, doi:10.15454/1.5572412770331912E12, MetaboHUB, PHENOME, IBVM, Centre INRAE de Nouvelle Aquitaine‐BordeauxVillenave d'OrnonFrance
| | | | - Yves Gibon
- Biologie du Fruit et Pathologie, UMR 1332, Centre INRAE de Nouvelle Aquitaine‐BordeauxINRAE, Univ.Villenave d'OrnonFrance
- PMB‐Metabolome, INRAE, 2018, Bordeaux Metabolome, doi:10.15454/1.5572412770331912E12, MetaboHUB, PHENOME, IBVM, Centre INRAE de Nouvelle Aquitaine‐BordeauxVillenave d'OrnonFrance
| | - Catherine Giauffret
- INRAE, Univ. Liège, Univ. Lille, Univ. Picardie Jules Verne, BioEcoAgroPeronneFrance
| | - Michel Zivy
- INRAE, CNRS, AgroParisTech, GQE‐Le MoulonUniv. Paris‐SaclayGif‐sur‐YvetteFrance
- PAPPSO, doi:10.15454/1.5572393176364355E12, GQE‐Le MoulonGif‐sur‐YvetteFrance
| | - Annick Moing
- Biologie du Fruit et Pathologie, UMR 1332, Centre INRAE de Nouvelle Aquitaine‐BordeauxINRAE, Univ.Villenave d'OrnonFrance
- PMB‐Metabolome, INRAE, 2018, Bordeaux Metabolome, doi:10.15454/1.5572412770331912E12, MetaboHUB, PHENOME, IBVM, Centre INRAE de Nouvelle Aquitaine‐BordeauxVillenave d'OrnonFrance
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Aluko OO, Li C, Wang Q, Liu H. Sucrose Utilization for Improved Crop Yields: A Review Article. Int J Mol Sci 2021; 22:4704. [PMID: 33946791 PMCID: PMC8124652 DOI: 10.3390/ijms22094704] [Citation(s) in RCA: 60] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2021] [Revised: 04/14/2021] [Accepted: 04/17/2021] [Indexed: 12/13/2022] Open
Abstract
Photosynthetic carbon converted to sucrose is vital for plant growth. Sucrose acts as a signaling molecule and a primary energy source that coordinates the source and sink development. Alteration in source-sink balance halts the physiological and developmental processes of plants, since plant growth is mostly triggered when the primary assimilates in the source leaf balance with the metabolic needs of the heterotrophic sinks. To measure up with the sink organ's metabolic needs, the improvement of photosynthetic carbon to synthesis sucrose, its remobilization, and utilization at the sink level becomes imperative. However, environmental cues that influence sucrose balance within these plant organs, limiting positive yield prospects, have also been a rising issue over the past few decades. Thus, this review discusses strategies to improve photosynthetic carbon assimilation, the pathways actively involved in the transport of sucrose from source to sink organs, and their utilization at the sink organ. We further emphasize the impact of various environmental cues on sucrose transport and utilization, and the strategic yield improvement approaches under such conditions.
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Affiliation(s)
- Oluwaseun Olayemi Aluko
- Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao 266101, China; (O.O.A.); (C.L.)
- Graduate School of Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Chuanzong Li
- Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao 266101, China; (O.O.A.); (C.L.)
- Graduate School of Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Qian Wang
- Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao 266101, China; (O.O.A.); (C.L.)
| | - Haobao Liu
- Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao 266101, China; (O.O.A.); (C.L.)
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24
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Wu B, Qiao J, Wang X, Liu M, Xu S, Sun D. Factors affecting the rapid changes of protein under short-term heat stress. BMC Genomics 2021; 22:263. [PMID: 33849452 PMCID: PMC8042900 DOI: 10.1186/s12864-021-07560-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2020] [Accepted: 03/26/2021] [Indexed: 01/04/2023] Open
Abstract
BACKGROUND Protein content determines the state of cells. The variation in protein abundance is crucial when organisms are in the early stages of heat stress, but the reasons affecting their changes are largely unknown. RESULTS We quantified 47,535 mRNAs and 3742 proteins in the filling grains of wheat in two different thermal environments. The impact of mRNA abundance and sequence features involved in protein translation and degradation on protein expression was evaluated by regression analysis. Transcription, codon usage and amino acid frequency were the main drivers of changes in protein expression under heat stress, and their combined contribution explains 58.2 and 66.4% of the protein variation at 30 and 40 °C (20 °C as control), respectively. Transcription contributes more to alterations in protein content at 40 °C (31%) than at 30 °C (6%). Furthermore, the usage of codon AAG may be closely related to the rapid alteration of proteins under heat stress. The contributions of AAG were 24 and 13% at 30 and 40 °C, respectively. CONCLUSION In this study, we analyzed the factors affecting the changes in protein expression in the early stage of heat stress and evaluated their influence.
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Affiliation(s)
- Bingjin Wu
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, 712100 Shaanxi China
| | - Jianwen Qiao
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Plant Protection, Northwest A&F University, Yangling, 712100 Shaanxi China
| | - Xiaoming Wang
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, 712100 Shaanxi China
| | - Manshuang Liu
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, 712100 Shaanxi China
| | - Shengbao Xu
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, 712100 Shaanxi China
| | - Daojie Sun
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, 712100 Shaanxi China
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25
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Dissection of Genetic Basis Underpinning Kernel Weight-Related Traits in Common Wheat. PLANTS 2021; 10:plants10040713. [PMID: 33916985 PMCID: PMC8103506 DOI: 10.3390/plants10040713] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/23/2021] [Revised: 03/27/2021] [Accepted: 03/29/2021] [Indexed: 11/17/2022]
Abstract
Genetic dissection kernel weight-related traits is of great significance for improving wheat yield potential. As one of the three major yield components of wheat, thousand kernel weight (TKW) was mainly affected by grain length (GL) and grain width (GW). To uncover the key loci for these traits, we carried out a quantitative trait loci (QTL) analysis of an F6 recombinant inbred lines (RILs) population derived from a cross of Henong 5290 (small grain) and 06Dn23 (big grain) with a 50 K single nucleotide polymorphism (SNP) array. A total of 17 stable and big effect QTL, including 5 for TKW, 8 for GL and 4 for GW, were detected on the chromosomes 1B, 2A, 2B, 2D, 4B, 5A, 6A and 6D, respectively. Among these, there were two co-located loci for three traits that were mapped on the chromosome 4BS and 6AL. The QTL on 6AL was the most stable locus and explained 15.4–24.8%, 4.1–8.8% and 15.7–24.4% of TKW, GW and GL variance, respectively. In addition, two more major QTL of GL were located on chromosome arm 2BL and 2DL, accounting for 9.7–17.8% and 13.6–19.8% of phenotypic variance, respectively. In this study, we found one novel co-located QTL associated with GL and TKW in 2DL, QGl.haaf-2DL.2/QTkw.haaf-2DL.2, which could explain 13.6–19.8% and 9.8–10.7% phenotypic variance, respectively. Genetic regions and linked markers of these stable QTL will help to further refine mapping of the corresponding loci and marker-assisted selection (MAS) breeding for wheat grain yield potential improvement.
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26
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Galieni A, D'Ascenzo N, Stagnari F, Pagnani G, Xie Q, Pisante M. Past and Future of Plant Stress Detection: An Overview From Remote Sensing to Positron Emission Tomography. FRONTIERS IN PLANT SCIENCE 2021; 11:609155. [PMID: 33584752 PMCID: PMC7873487 DOI: 10.3389/fpls.2020.609155] [Citation(s) in RCA: 45] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2020] [Accepted: 11/18/2020] [Indexed: 05/24/2023]
Abstract
Plant stress detection is considered one of the most critical areas for the improvement of crop yield in the compelling worldwide scenario, dictated by both the climate change and the geopolitical consequences of the Covid-19 epidemics. A complicated interconnection of biotic and abiotic stressors affect plant growth, including water, salt, temperature, light exposure, nutrients availability, agrochemicals, air and soil pollutants, pests and diseases. In facing this extended panorama, the technology choice is manifold. On the one hand, quantitative methods, such as metabolomics, provide very sensitive indicators of most of the stressors, with the drawback of a disruptive approach, which prevents follow up and dynamical studies. On the other hand qualitative methods, such as fluorescence, thermography and VIS/NIR reflectance, provide a non-disruptive view of the action of the stressors in plants, even across large fields, with the drawback of a poor accuracy. When looking at the spatial scale, the effect of stress may imply modifications from DNA level (nanometers) up to cell (micrometers), full plant (millimeters to meters), and entire field (kilometers). While quantitative techniques are sensitive to the smallest scales, only qualitative approaches can be used for the larger ones. Emerging technologies from nuclear and medical physics, such as computed tomography, magnetic resonance imaging and positron emission tomography, are expected to bridge the gap of quantitative non-disruptive morphologic and functional measurements at larger scale. In this review we analyze the landscape of the different technologies nowadays available, showing the benefits of each approach in plant stress detection, with a particular focus on the gaps, which will be filled in the nearby future by the emerging nuclear physics approaches to agriculture.
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Affiliation(s)
- Angelica Galieni
- Research Centre for Vegetable and Ornamental Crops, Council for Agricultural Research and Economics, Monsampolo del Tronto, Italy
| | - Nicola D'Ascenzo
- School of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, China
- Department of Medical Physics and Engineering, Istituto Neurologico Mediterraneo, I.R.C.C.S, Pozzilli, Italy
| | - Fabio Stagnari
- Faculty of Bioscience and Technology for Food, Agriculture and Environment, University of Teramo, Teramo, Italy
| | - Giancarlo Pagnani
- Faculty of Bioscience and Technology for Food, Agriculture and Environment, University of Teramo, Teramo, Italy
| | - Qingguo Xie
- School of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, China
- Department of Medical Physics and Engineering, Istituto Neurologico Mediterraneo, I.R.C.C.S, Pozzilli, Italy
| | - Michele Pisante
- Faculty of Bioscience and Technology for Food, Agriculture and Environment, University of Teramo, Teramo, Italy
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27
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Lou H, Zhang R, Liu Y, Guo D, Zhai S, Chen A, Zhang Y, Xie C, You M, Peng H, Liang R, Ni Z, Sun Q, Li B. Genome-wide association study of six quality-related traits in common wheat (Triticum aestivum L.) under two sowing conditions. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2021; 134:399-418. [PMID: 33155062 DOI: 10.1007/s00122-020-03704-y] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2020] [Accepted: 10/08/2020] [Indexed: 05/20/2023]
Abstract
We identified genomic regions associated with six quality-related traits in wheat under two sowing conditions and analyzed the effects of multienvironment-significant SNPs on the stability of these traits. Grain quality affects the nutritional and commercial value of wheat (Triticum aestivum L.) and is a critical factor influencing consumer preferences for specific wheat varieties. Climate change is predicted to increase environmental stress and thereby reduce wheat quality. Here, we performed a genotyping assay involving the use of the wheat 90 K array in a genome-wide association study of six quality-related traits in 486 wheat accessions under two sowing conditions (normal and late sowing) over 4 years. We identified 64 stable quantitative trait loci (QTL), including 10 for grain protein content, 9 for wet gluten content, 4 for grain starch content, 14 for water absorption, 15 for dough stability time and 12 for grain hardness in wheat under two sowing conditions. These QTL harbored 175 single nucleotide polymorphisms (SNPs), explaining approximately 3-13% of the phenotypic variation in multiple environments. Some QTL on chromosomes 6A and 5D were associated with multiple traits simultaneously, and two (QNGPC.cau-6A, QNGH.cau-5D) harbored known genes, such as NAM-A1 for grain protein content and Pinb for grain hardness, whereas other QTL could facilitate gene discovery. Forty-three SNPs that were detected under late or both normal and late sowing conditions appear to be related to phenotypic stability. The effects of these SNP alleles were confirmed in the association population. The results of this study will be useful for further dissecting the genetic basis of quality-related traits in wheat and developing new wheat cultivars with desirable alleles to improve the stability of grain quality.
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Affiliation(s)
- Hongyao Lou
- State Key Laboratory for Agrobiotechnology/Key Laboratory of Crop Heterosis and Utilization, the Ministry of Education/Key Laboratory of Crop Genetic Improvement, Beijing Municipality/China Agricultural University, Beijing, 100193, China
| | - Runqi Zhang
- State Key Laboratory for Agrobiotechnology/Key Laboratory of Crop Heterosis and Utilization, the Ministry of Education/Key Laboratory of Crop Genetic Improvement, Beijing Municipality/China Agricultural University, Beijing, 100193, China
| | - Yitong Liu
- Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Nanxincun 20, Xiangshan, Beijing, 100093, China
- University of the Chinese Academy of Sciences, Beijing, 100049, China
| | - Dandan Guo
- State Key Laboratory for Agrobiotechnology/Key Laboratory of Crop Heterosis and Utilization, the Ministry of Education/Key Laboratory of Crop Genetic Improvement, Beijing Municipality/China Agricultural University, Beijing, 100193, China
| | - Shanshan Zhai
- State Key Laboratory for Agrobiotechnology/Key Laboratory of Crop Heterosis and Utilization, the Ministry of Education/Key Laboratory of Crop Genetic Improvement, Beijing Municipality/China Agricultural University, Beijing, 100193, China
| | - Aiyan Chen
- State Key Laboratory for Agrobiotechnology/Key Laboratory of Crop Heterosis and Utilization, the Ministry of Education/Key Laboratory of Crop Genetic Improvement, Beijing Municipality/China Agricultural University, Beijing, 100193, China
| | - Yufeng Zhang
- State Key Laboratory for Agrobiotechnology/Key Laboratory of Crop Heterosis and Utilization, the Ministry of Education/Key Laboratory of Crop Genetic Improvement, Beijing Municipality/China Agricultural University, Beijing, 100193, China
| | - Chaojie Xie
- State Key Laboratory for Agrobiotechnology/Key Laboratory of Crop Heterosis and Utilization, the Ministry of Education/Key Laboratory of Crop Genetic Improvement, Beijing Municipality/China Agricultural University, Beijing, 100193, China
| | - Mingshan You
- State Key Laboratory for Agrobiotechnology/Key Laboratory of Crop Heterosis and Utilization, the Ministry of Education/Key Laboratory of Crop Genetic Improvement, Beijing Municipality/China Agricultural University, Beijing, 100193, China
| | - Huiru Peng
- State Key Laboratory for Agrobiotechnology/Key Laboratory of Crop Heterosis and Utilization, the Ministry of Education/Key Laboratory of Crop Genetic Improvement, Beijing Municipality/China Agricultural University, Beijing, 100193, China
| | - Rongqi Liang
- State Key Laboratory for Agrobiotechnology/Key Laboratory of Crop Heterosis and Utilization, the Ministry of Education/Key Laboratory of Crop Genetic Improvement, Beijing Municipality/China Agricultural University, Beijing, 100193, China
| | - Zhongfu Ni
- State Key Laboratory for Agrobiotechnology/Key Laboratory of Crop Heterosis and Utilization, the Ministry of Education/Key Laboratory of Crop Genetic Improvement, Beijing Municipality/China Agricultural University, Beijing, 100193, China
- National Plant Gene Research Centre, Beijing, 100193, China
| | - Qixin Sun
- State Key Laboratory for Agrobiotechnology/Key Laboratory of Crop Heterosis and Utilization, the Ministry of Education/Key Laboratory of Crop Genetic Improvement, Beijing Municipality/China Agricultural University, Beijing, 100193, China
- National Plant Gene Research Centre, Beijing, 100193, China
| | - Baoyun Li
- State Key Laboratory for Agrobiotechnology/Key Laboratory of Crop Heterosis and Utilization, the Ministry of Education/Key Laboratory of Crop Genetic Improvement, Beijing Municipality/China Agricultural University, Beijing, 100193, China.
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28
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Multi-Omics Analysis of Small RNA, Transcriptome, and Degradome in T. turgidum-Regulatory Networks of Grain Development and Abiotic Stress Response. Int J Mol Sci 2020; 21:ijms21207772. [PMID: 33096606 PMCID: PMC7589925 DOI: 10.3390/ijms21207772] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2020] [Revised: 10/08/2020] [Accepted: 10/19/2020] [Indexed: 01/04/2023] Open
Abstract
Crop reproduction is highly sensitive to water deficit and heat stress. The molecular networks of stress adaptation and grain development in tetraploid wheat (Triticum turgidum durum) are not well understood. Small RNAs (sRNAs) are important epigenetic regulators connecting the transcriptional and post-transcriptional regulatory networks. This study presents the first multi-omics analysis of the sRNAome, transcriptome, and degradome in T. turgidum developing grains, under single and combined water deficit and heat stress. We identified 690 microRNAs (miRNAs), with 84 being novel, from 118 sRNA libraries. Complete profiles of differentially expressed miRNAs (DEMs) specific to genotypes, stress types, and different reproductive time-points are provided. The first degradome sequencing report for developing durum grains discovered a significant number of new target genes regulated by miRNAs post-transcriptionally. Transcriptome sequencing profiled 53,146 T. turgidum genes, swith differentially expressed genes (DEGs) enriched in functional categories such as nutrient metabolism, cellular differentiation, transport, reproductive development, and hormone transduction pathways. miRNA-mRNA networks that affect grain characteristics such as starch synthesis and protein metabolism were constructed on the basis of integrated analysis of the three omics. This study provides a substantial amount of novel information on the post-transcriptional networks in T. turgidum grains, which will facilitate innovations for breeding programs aiming to improve crop resilience and grain quality.
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29
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Influence of Climate Conditions on the Temporal Development of Wheat Yields in a Long-Term Experiment in an Area with Pleistocene Loess. CLIMATE 2020. [DOI: 10.3390/cli8090100] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Field experiments were conducted to test different agronomic practices, such as soil cultivation, fertilization, and pest and weed management, in highly controlled plot cultivation. The inter-annual yields and the interpretation of such experiments is highly affected by the variability of climatic conditions and fertilization level. We examined the effect of different climate indices, such as winterkill, late spring frost, early autumn frost, different drought parameters, precipitation-free periods, and heat-related stress, on winter wheat yield. This experiment was conducted in an agricultural area with highly fertile conditions, characterized by a high available water capacity and considerable C and N contents in lower soil depths. Residuals were calculated from long-term yield trends with a validated method (time series autoregressive integrated moving average ARIMA) and these served as base values for the detection of climate-induced, short-term, and inter-annual variations. In a subsequent step, the real yield values were used for their derivations from climate factors. Residuals and real yields were correlated with climate variables in multiple regression of quantitative analyses of the yield sensitivity. The inter-annual variation of yields varied considerably within the observation period. However, the variation was less an effect of the climatic conditions during the main growing time periods, being more of an effect of the prevailing climate conditions in the winter period as well as of the transition periods from winter to the warmer season and vice versa. The high storage capacity of plant available water exerted a remarkable dampening effect on drought-induced effects during the main vegetation periods. Increasing fertilization led to increased susceptibility to drought stress. The results indicate a changed picture of the yield development in these fertile locations.
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Gao Z, Liu Q, Zhang Y, Chen D, Zhan X, Deng C, Cheng S, Cao L. OsCUL3a-Associated Molecular Switches Have Functions in Cell Metabolism, Cell Death, and Disease Resistance. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2020; 68:5471-5482. [PMID: 32320244 DOI: 10.1021/acs.jafc.9b07426] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
This study applies parallel reaction monitoring (PRM) proteomics and CRISPR-Cas9 mutagenesis to identify relationships between cell metabolism, cell death, and disease resistance. In oscul3a (oscullin3a) mutants, OsCUL3a-associated molecular switches are responsible for disrupted cell metabolism that leads to increased total lipid content in rice grain, a late accumulation of H2O2 in leaves, enhanced Xanthomonas oryzae pv. oryzae disease resistance, and suppressed panicle and first internode growth. In oscul3a mutants, PRM-confirmed upregulated molecular switch proteins include lipoxygenases (CM-LOX1 and CM-LOX2), suggesting a novel connection between ferroptosis and rice lesion mimic formation. Rice immunity-associated proteins OsNPR1 and OsNPR3 were shown to interact with each other and have opposing regulatory effects based on the cell death phenotype of osnpr1/oscul3a and osnpr3/oscul3a double mutants. Together, these results describe a network that regulates plant growth, disease resistance, and grain quality that includes the E3 ligase OsCUL3a, cell metabolism-associated molecular switches, and immunity switches OsNPR1 and OsNPR3.
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Affiliation(s)
- Zhiqiang Gao
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, Zhejiang 310006, People's Republic of China
- Key Laboratory for Zhejiang Super Rice Research, China National Rice Research Institute, Hangzhou, Zhejiang 310006, People's Republic of China
- College of Life Sciences, Gannan Normal University, Ganzhou, Jiangxi 341000, People's Republic of China
| | - Qunen Liu
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, Zhejiang 310006, People's Republic of China
- Key Laboratory for Zhejiang Super Rice Research, China National Rice Research Institute, Hangzhou, Zhejiang 310006, People's Republic of China
| | - Yingxin Zhang
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, Zhejiang 310006, People's Republic of China
- Key Laboratory for Zhejiang Super Rice Research, China National Rice Research Institute, Hangzhou, Zhejiang 310006, People's Republic of China
| | - Daibo Chen
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, Zhejiang 310006, People's Republic of China
- Key Laboratory for Zhejiang Super Rice Research, China National Rice Research Institute, Hangzhou, Zhejiang 310006, People's Republic of China
| | - Xiaodeng Zhan
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, Zhejiang 310006, People's Republic of China
- Key Laboratory for Zhejiang Super Rice Research, China National Rice Research Institute, Hangzhou, Zhejiang 310006, People's Republic of China
| | - Chenwei Deng
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, Zhejiang 310006, People's Republic of China
- Key Laboratory for Zhejiang Super Rice Research, China National Rice Research Institute, Hangzhou, Zhejiang 310006, People's Republic of China
| | - Shihua Cheng
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, Zhejiang 310006, People's Republic of China
- Key Laboratory for Zhejiang Super Rice Research, China National Rice Research Institute, Hangzhou, Zhejiang 310006, People's Republic of China
| | - Liyong Cao
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, Zhejiang 310006, People's Republic of China
- Key Laboratory for Zhejiang Super Rice Research, China National Rice Research Institute, Hangzhou, Zhejiang 310006, People's Republic of China
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Wang J, Gao X, Dong J, Tian X, Wang J, Palta JA, Xu S, Fang Y, Wang Z. Over-Expression of the Heat-Responsive Wheat Gene TaHSP23.9 in Transgenic Arabidopsis Conferred Tolerance to Heat and Salt Stress. FRONTIERS IN PLANT SCIENCE 2020; 11:243. [PMID: 32211001 PMCID: PMC7069362 DOI: 10.3389/fpls.2020.00243] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2019] [Accepted: 02/17/2020] [Indexed: 05/09/2023]
Abstract
The small heat shock proteins (sHSP) are stress-induced proteins with molecular weights ranging from 12 to 42 kDa that act as molecular chaperones to prevent the irreversible aggregation of denaturing proteins. In this study, we cloned the heat responsive gene TaHSP23.9 from wheat (Triticum aestivum) based on TMT-labeled quantitative proteomic analysis in our previous work and examined its function in the response of transgenic Arabidopsis to heat and salt stress. Amino acid alignment and phylogenetic tree analysis showed that TaHSP23.9 contained a typically conserved structure of the alpha-crystallin domain and is closely related to OsHSP23.2 in rice. Transient expression assays demonstrated that TaHSP23.9 is located on the endoplasmic reticulum. Quantitative real-time PCR demonstrated that TaHSP23.9 was expressed much more in filling grains under normal conditions and was significantly upregulated by heat and salt stress. Transgenic Arabidopsis plants that constitutively over-expressed TaHSP23.9 had no visible differences or adverse phenotypes compared with the wild type under normal conditions but exhibited enhanced tolerance to heat and salt stress under stress conditions. In addition, we found that the expression level of TaHSP23.9 was significantly higher in the heat-tolerant wheat varieties than in the heat-sensitive varieties. Our results suggest that TaHSP23.9 may function as a protein chaperone to positively regulate plant responses to heat and salt stress and could be developed as a molecular marker for screening heat-tolerant wheat varieties.
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Affiliation(s)
- Jun Wang
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, China
| | - Xin Gao
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, China
| | - Jun Dong
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, China
| | - Xinyu Tian
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, China
| | - Junzhe Wang
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, China
| | - Jairo A. Palta
- CSIRO Agriculture and Food, Wembley, WA, Australia
- The UWA Institute of Agriculture and School of Agriculture and Environment, The University of Western Australia, Perth, WA, Australia
| | - Shengbao Xu
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, China
| | - Yan Fang
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, China
| | - Zhonghua Wang
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, China
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Zhao P, Javed S, Shi X, Wu B, Zhang D, Xu S, Wang X. Varying Architecture of Heat Shock Elements Contributes to Distinct Magnitudes of Target Gene Expression and Diverged Biological Pathways in Heat Stress Response of Bread Wheat. Front Genet 2020; 11:30. [PMID: 32117446 PMCID: PMC7010933 DOI: 10.3389/fgene.2020.00030] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2019] [Accepted: 01/09/2020] [Indexed: 12/26/2022] Open
Abstract
The heat shock transcription factor (HSF) binds to cis-regulatory motifs known as heat shock elements (HSEs) to mediate the transcriptional response of HSF target genes. However, the HSF-HSEs interaction is not clearly understood. Using the newly released genome reference sequence of bread wheat, we identified 39,478 HSEs (95.6% of which were non-canonical HSEs) and collapsed them into 30,604 wheat genes, accounting for 27.6% wheat genes. Using the intensively heat-responsive transcriptomes of wheat, we demonstrated that canonical HSEs have a higher propensity to induce a response in the closest downstream genes than non-canonical HSEs. However, the response magnitude induced by non-canonical HSEs was comparable to that induced by canonical HSEs. Significantly, some non-canonical HSEs that contain mismatched nucleotides at specific positions within HSEs had a larger response magnitude than that of canonical HSEs. Consistently, most of the HSEs identified in the promoter regions of heat shock proteins were non-canonical HSEs, suggesting an important role for these non-canonical HSEs. Lastly, distinct diverged biological processes were observed between genes containing different HSE types, suggesting that sequence variation in HSEs plays a key role in the evolution of heat responses and adaptation. Our results provide a new perspective to understand the regulatory network underlying heat responses.
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Affiliation(s)
- Peng Zhao
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, China
| | - Sidra Javed
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, China
| | - Xue Shi
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, China
| | - Bingjin Wu
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, China
| | - Dongzhi Zhang
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, China
| | - Shengbao Xu
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, China
| | - Xiaoming Wang
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, China
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Shu Y, Zhou Y, Mu K, Hu H, Chen M, He Q, Huang S, Ma H, Yu X. A transcriptomic analysis reveals soybean seed pre-harvest deterioration resistance pathways under high temperature and humidity stress. Genome 2020; 63:115-124. [PMID: 31774699 DOI: 10.1139/gen-2019-0094] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2023]
Abstract
Pre-harvest soybean seeds in the field are susceptible to high temperature and humidity (HTH) stress, leading to pre-harvest seed deterioration, which will result in a reduction in grain quality, yield, and seed vigor. To understand the gene expression involved in seed deterioration response under HTH stress, in this study, we conducted an RNA-Seq analysis using two previously screened soybean cultivars with contrasting seed deterioration resistance. HTH stress induced 1081 and 357 differentially expressed genes (DEGs) in the sensitive cultivar Ningzhen No. 1 and resistant cultivar Xiangdou No. 3, respectively. The majority of DEGs in the resistant cultivar were up-regulated, while down-regulated DEGs were predominant in the sensitive cultivar. KEGG pathway analysis revealed that metabolic pathways, biosynthesis of secondary metabolites, and protein processing in endoplasmic reticulum were the predominant pathways in both cultivars during seed deterioration under HTH stress. The genes involved in photosynthesis, carbohydrate metabolism, lipid metabolism, and heat shock proteins pathways might contribute to the different response to seed deterioration under HTH treatment in the two soybean cultivars. Our study extends the knowledge of gene expression in soybean seed under HTH stress and further provides insight into the molecular mechanism of seed deterioration as well as new strategies for breeding soybean with improved seed deterioration resistance.
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Affiliation(s)
- Yingjie Shu
- College of Agriculture, Anhui Science & Technology University, Fengyang 233100, China
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing 210095, China
| | - Yuli Zhou
- College of Agriculture, Anhui Science & Technology University, Fengyang 233100, China
| | - Kebin Mu
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing 210095, China
| | - Huimin Hu
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing 210095, China
| | - Ming Chen
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing 210095, China
| | - Qingyuan He
- College of Agriculture, Anhui Science & Technology University, Fengyang 233100, China
| | - Shoucheng Huang
- College of Agriculture, Anhui Science & Technology University, Fengyang 233100, China
| | - Hao Ma
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing 210095, China
| | - Xingwang Yu
- Department of Crop and Soil Sciences, North Carolina State University, Raleigh, NC 27695, USA
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Razzaq A, Sadia B, Raza A, Khalid Hameed M, Saleem F. Metabolomics: A Way Forward for Crop Improvement. Metabolites 2019; 9:E303. [PMID: 31847393 PMCID: PMC6969922 DOI: 10.3390/metabo9120303] [Citation(s) in RCA: 93] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2019] [Revised: 12/02/2019] [Accepted: 12/11/2019] [Indexed: 12/15/2022] Open
Abstract
Metabolomics is an emerging branch of "omics" and it involves identification and quantification of metabolites and chemical footprints of cellular regulatory processes in different biological species. The metabolome is the total metabolite pool in an organism, which can be measured to characterize genetic or environmental variations. Metabolomics plays a significant role in exploring environment-gene interactions, mutant characterization, phenotyping, identification of biomarkers, and drug discovery. Metabolomics is a promising approach to decipher various metabolic networks that are linked with biotic and abiotic stress tolerance in plants. In this context, metabolomics-assisted breeding enables efficient screening for yield and stress tolerance of crops at the metabolic level. Advanced metabolomics analytical tools, like non-destructive nuclear magnetic resonance spectroscopy (NMR), liquid chromatography mass-spectroscopy (LC-MS), gas chromatography-mass spectrometry (GC-MS), high performance liquid chromatography (HPLC), and direct flow injection (DFI) mass spectrometry, have sped up metabolic profiling. Presently, integrating metabolomics with post-genomics tools has enabled efficient dissection of genetic and phenotypic association in crop plants. This review provides insight into the state-of-the-art plant metabolomics tools for crop improvement. Here, we describe the workflow of plant metabolomics research focusing on the elucidation of biotic and abiotic stress tolerance mechanisms in plants. Furthermore, the potential of metabolomics-assisted breeding for crop improvement and its future applications in speed breeding are also discussed. Mention has also been made of possible bottlenecks and future prospects of plant metabolomics.
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Affiliation(s)
- Ali Razzaq
- Centre of Agricultural Biochemistry and Biotechnology (CABB), University of Agriculture, Faisalabad 38040, Pakistan; (A.R.); (B.S.)
| | - Bushra Sadia
- Centre of Agricultural Biochemistry and Biotechnology (CABB), University of Agriculture, Faisalabad 38040, Pakistan; (A.R.); (B.S.)
| | - Ali Raza
- Oil Crops Research Institute, Chinese Academy of Agricultural Sciences (CAAS), Wuhan 430062, China;
| | - Muhammad Khalid Hameed
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China;
| | - Fozia Saleem
- Centre of Agricultural Biochemistry and Biotechnology (CABB), University of Agriculture, Faisalabad 38040, Pakistan; (A.R.); (B.S.)
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Wang X, Chen S, Shi X, Liu D, Zhao P, Lu Y, Cheng Y, Liu Z, Nie X, Song W, Sun Q, Xu S, Ma C. Hybrid sequencing reveals insight into heat sensing and signaling of bread wheat. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2019; 98:1015-1032. [PMID: 30891832 PMCID: PMC6850178 DOI: 10.1111/tpj.14299] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/03/2018] [Revised: 01/17/2019] [Accepted: 02/19/2019] [Indexed: 05/19/2023]
Abstract
Wheat (Triticum aestivum L.), a globally important crop, is challenged by increasing temperatures (heat stress, HS). However its polyploid nature, the incompleteness of its genome sequences and annotation, the lack of comprehensive HS-responsive transcriptomes and the unexplored heat sensing and signaling of wheat hinder our full understanding of its adaptations to HS. The recently released genome sequences of wheat, as well as emerging single-molecular sequencing technologies, provide an opportunity to thoroughly investigate the molecular mechanisms of the wheat response to HS. We generated a high-resolution spatio-temporal transcriptome map of wheat flag leaves and filling grain under HS at 0 min, 5 min, 10 min, 30 min, 1 h and 4 h by combining full-length single-molecular sequencing and Illumina short reads sequencing. This hybrid sequencing newly discovered 4947 loci and 70 285 transcripts, generating the comprehensive and dynamic list of HS-responsive full-length transcripts and complementing the recently released wheat reference genome. Large-scale analysis revealed a global landscape of heat adaptations, uncovering unexpected rapid heat sensing and signaling, significant changes of more than half of HS-responsive genes within 30 min, heat shock factor-dependent and -independent heat signaling, and metabolic alterations in early HS-responses. Integrated analysis also demonstrated the differential responses and partitioned functions between organs and subgenomes, and suggested a differential pattern of transcriptional and alternative splicing regulation in the HS response. This study provided comprehensive data for dissecting molecular mechanisms of early HS responses in wheat and highlighted the genomic plasticity and evolutionary divergence of polyploidy wheat.
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Affiliation(s)
- Xiaoming Wang
- State Key Laboratory of Crop Stress Biology for Arid AreasCollege of AgronomyNorthwest A&F UniversityYangling712100ShaanxiChina
| | - Siyuan Chen
- State Key Laboratory of Crop Stress Biology for Arid AreasCollege of Life SciencesNorthwest A&F UniversityYangling712100ShaanxiChina
- Center of BioinformaticsCollege of Life SciencesNorthwest A&F UniversityYangling712100ShaanxiChina
| | - Xue Shi
- State Key Laboratory of Crop Stress Biology for Arid AreasCollege of AgronomyNorthwest A&F UniversityYangling712100ShaanxiChina
| | - Danni Liu
- FrasergenWuhan East Lake High‐tech ZoneWuhan430075China
| | - Peng Zhao
- State Key Laboratory of Crop Stress Biology for Arid AreasCollege of AgronomyNorthwest A&F UniversityYangling712100ShaanxiChina
| | - Yunze Lu
- State Key Laboratory of Crop Stress Biology for Arid AreasCollege of AgronomyNorthwest A&F UniversityYangling712100ShaanxiChina
| | - Yanbing Cheng
- FrasergenWuhan East Lake High‐tech ZoneWuhan430075China
| | - Zhenshan Liu
- State Key Laboratory of Crop Stress Biology for Arid AreasCollege of AgronomyNorthwest A&F UniversityYangling712100ShaanxiChina
| | - Xiaojun Nie
- State Key Laboratory of Crop Stress Biology for Arid AreasCollege of AgronomyNorthwest A&F UniversityYangling712100ShaanxiChina
| | - Weining Song
- State Key Laboratory of Crop Stress Biology for Arid AreasCollege of AgronomyNorthwest A&F UniversityYangling712100ShaanxiChina
| | - Qixin Sun
- State Key Laboratory of Crop Stress Biology for Arid AreasCollege of AgronomyNorthwest A&F UniversityYangling712100ShaanxiChina
- Department of Plant Genetics & BreedingChina Agricultural UniversityYuanmingyuan Xi Road No. 2, Haidian DistrictBeijing100193China
| | - Shengbao Xu
- State Key Laboratory of Crop Stress Biology for Arid AreasCollege of AgronomyNorthwest A&F UniversityYangling712100ShaanxiChina
| | - Chuang Ma
- State Key Laboratory of Crop Stress Biology for Arid AreasCollege of Life SciencesNorthwest A&F UniversityYangling712100ShaanxiChina
- Center of BioinformaticsCollege of Life SciencesNorthwest A&F UniversityYangling712100ShaanxiChina
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Can wheat survive in heat? Assembling tools towards successful development of heat stress tolerance in Triticum aestivum L. Mol Biol Rep 2019; 46:2577-2593. [PMID: 30758807 DOI: 10.1007/s11033-019-04686-x] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2018] [Accepted: 02/07/2019] [Indexed: 10/27/2022]
Abstract
Wheat is an important cereal crop that fulfils the calorie demands of the global humanity. Rapidly expanding populations are exposed to a fast approaching acute shortage in the adequate supply of food and fibre from agricultural resources. One of the significant threats to food security lies in the constantly increasing global temperatures which inflict serious injuries to the plants in terms of various physiological, biochemical and molecular processes. Wheat being a cool season crop is majorly impacted by the heat stress which adversely affects crop productivity and yield. These challenges would be potentially defeated with the implementation of genetic engineering strategies coupled with the new genome editing approaches. Development of transgenic plants for various crops has proved very effective for the incorporation of improved varietal traits in context of heat stress. With a similar approach, we need to target for the generation of heat stress tolerant wheat varieties which are capable of survival in such adverse conditions and yet produce well. In this review, we enumerate the current status of research on the heat stress responsive genes/factors and their potential role in mitigating heat stress in plants particularly in wheat with an aim to help the researchers get a holistic view of this topic. Also, we discuss on the prospective signalling pathway that is triggered in plants in general under heat stress.
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Wang X, Hou L, Lu Y, Wu B, Gong X, Liu M, Wang J, Sun Q, Vierling E, Xu S. Metabolic adaptation of wheat grain contributes to a stable filling rate under heat stress. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:5531-5545. [PMID: 30476278 PMCID: PMC6255704 DOI: 10.1093/jxb/ery303] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2018] [Accepted: 08/11/2018] [Indexed: 05/23/2023]
Abstract
Wheat (Triticum aestivum) is particularly vulnerable to heat stress during the grain filling stage, and this can adversely affect the final yield. However, the underlying physiological and molecular mechanisms are largely unknown. In this study, the effects of heat stress on grain filling were investigated using wheat varieties with different levels of thermotolerance. Decreased grain weights and filling durations, increased protein contents, and stable filling rates across diverse varieties under different heat regimes suggested a general mechanism for heat adaptation. Proteomic analysis identified 309 heat-responsive proteins (HRPs), and revealed a general decrease in protein synthesis components and metabolic proteins, but a significant increase in stress-response proteins and storage proteins. Metabolomic analysis identified 98 metabolites specifically changed by heat stress, and suggested a global decrease in the content of carbohydrate metabolites, an increased content of amino acids, and stable levels of starch synthesis precursors. The energy-consuming HRPs suggested that less energy was channelled into metabolism and protein synthesis, whereas more energy was allocated to the stress response under elevated heat conditions. Collectively, the data demonstrated a widely distributed mechanism for heat adaptation of metabolism, in which the assimilation and energy required for metabolism and protein synthesis are reallocated to heat protection and deposition of reserves, resulting in increased storage protein accumulation and a stable filling rate.
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Affiliation(s)
- Xiaoming Wang
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, Shaanxi, China
| | - Lijiang Hou
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, Shaanxi, China
| | - Yunze Lu
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, Shaanxi, China
| | - Bingjin Wu
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, Shaanxi, China
| | - Xue Gong
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, Shaanxi, China
| | - Manshuang Liu
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, Shaanxi, China
| | - Jun Wang
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, Shaanxi, China
| | - Qixin Sun
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, Shaanxi, China
- Department of Plant Genetics & Breeding, China Agricultural University, Haidian District, Beijing, China
| | - Elizabeth Vierling
- Department of Biochemistry & Molecular Biology, University of Massachusetts, Amherst, MA, USA
| | - Shengbao Xu
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, Shaanxi, China
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