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Guo X, Johnston SM, Qi Y, Johnson GA, Badea CT. 4D micro-CT using fast prospective gating. Phys Med Biol 2012; 57:257-71. [PMID: 22156062 DOI: 10.1088/0031-9155/57/1/257] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Micro-CT is currently used in preclinical studies to provide anatomical information. But, there is also significant interest in using this technology to obtain functional information. We report here a new sampling strategy for 4D micro-CT for functional cardiac and pulmonary imaging. Rapid scanning of free-breathing mice is achieved with fast prospective gating (FPG) implemented on a field programmable gate array. The method entails on-the-fly computation of delays from the R peaks of the ECG signals or the peaks of the respiratory signals for the triggering pulses. Projection images are acquired for all cardiac or respiratory phases at each angle before rotating to the next angle. FPG can deliver the faster scan time of retrospective gating (RG) with the regular angular distribution of conventional prospective gating for cardiac or respiratory gating. Simultaneous cardio-respiratory gating is also possible with FPG in a hybrid retrospective/prospective approach. We have performed phantom experiments to validate the new sampling protocol and compared the results from FPG and RG in cardiac imaging of a mouse. Additionally, we have evaluated the utility of incorporating respiratory information in 4D cardiac micro-CT studies with FPG. A dual-source micro-CT system was used for image acquisition with pulsed x-ray exposures (80 kVp, 100 mA, 10 ms). The cardiac micro-CT protocol involves the use of a liposomal blood pool contrast agent containing 123 mg I ml(-1) delivered via a tail vein catheter in a dose of 0.01 ml g(-1) body weight. The phantom experiment demonstrates that FPG can distinguish the successive phases of phantom motion with minimal motion blur, and the animal study demonstrates that respiratory FPG can distinguish inspiration and expiration. 4D cardiac micro-CT imaging with FPG provides image quality superior to RG at an isotropic voxel size of 88 μm and 10 ms temporal resolution. The acquisition time for either sampling approach is less than 5 min. The radiation dose associated with the proposed method is in the range of a typical micro-CT dose (256 mGy for the cardiac study). Ignoring respiration does not significantly affect anatomic information in cardiac studies. FPG can deliver short scan times with low-dose 4D micro-CT imaging without sacrificing image quality. FPG can be applied in high-throughput longitudinal studies in a wide range of applications, including drug safety and cardiopulmonary phenotyping.
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Affiliation(s)
- Xiaolian Guo
- Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, People's Republic of China
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2
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Nouls J, Fanarjian M, Hedlund L, Driehuys B. A Constant-Volume Ventilator and Gas Recapture System for Hyperpolarized Gas MRI of Mouse and Rat Lungs. CONCEPTS IN MAGNETIC RESONANCE. PART B, MAGNETIC RESONANCE ENGINEERING 2011; 39B:78-88. [PMID: 21625347 PMCID: PMC3103138 DOI: 10.1002/cmr.b.20192] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Affiliation(s)
- John Nouls
- Center for In Vivo Microscopy, Duke University Medical Center, Durham, NC
| | - Manuel Fanarjian
- Department of Biomedical Engineering, Duke University, Durham, NC
| | - Laurence Hedlund
- Center for In Vivo Microscopy, Duke University Medical Center, Durham, NC
| | - Bastiaan Driehuys
- Center for In Vivo Microscopy, Duke University Medical Center, Durham, NC
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3
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Alsaid H, Sabbah M, Bendahmane Z, Fokapu O, Felblinger J, Desbleds-Mansard C, Corot C, Briguet A, Crémillieux Y, Canet-Soulas E. High-resolution contrast-enhanced MRI of atherosclerosis with digital cardiac and respiratory gating in mice. Magn Reson Med 2007; 58:1157-63. [DOI: 10.1002/mrm.21308] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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4
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Abstract
Magnetic-resonance microscopy is a rapidly growing and a widely applied imaging method in translational neuroscience studies. Emphasis has been placed on anatomical, functional, and metabolic studies of genetically engineered mouse models of human disease and the need for efficient phenotyping at all levels. Magnetic-resonance microscopy is now implemented in many laboratories worldwide due to the availability of commercial high-field magnetic-resonance instruments for use in small animals, the development of accessories (including miniature radio-frequency coils), magnetic-resonance compatible physiological monitoring equipment, and access to adjustable anaesthesia techniques. Two of the major magnetic-resonance microscopy applications in the neurosciences-structural and functional magnetic-resonance microscopy-will be reviewed.
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Affiliation(s)
- Helene Benveniste
- Medical Department, Brookhaven National Laboratory, Upton, NY 11973, USA.
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5
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Hedlund LW, Johnson GA. Morphology of the small-animal lung using magnetic resonance microscopy. Ann Am Thorac Soc 2006; 2:481-3, 501-2. [PMID: 16352752 PMCID: PMC2713336 DOI: 10.1513/pats.200507-074ds] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Small-animal imaging with magnetic resonance microscopy (MRM) has become an important tool in biomedical research. When MRM is used to image perfusion-fixed and "stained" whole mouse specimens, cardiopulmonary morphology can be visualized, nondestructively, in exquisite detail in all three dimensions. This capability can be a valuable tool for morphologic phenotyping of different mouse strains commonly used in genomics research. When these imaging techniques are combined with specialized methods for biological motion control and animal support, the lungs of the live, small animal can be imaged. Although in vivo imaging may not achieve the high resolution possible with a fixed specimen, dynamic functional studies and survival studies that follow the progression of pulmonary change related to disease or environmental exposure are possible. By combining conventional proton imaging with gas imaging, using hyperpolarized 3He, it is possible to image the tissue and gas compartments of the lung. This capability is illustrated in studies on an emphysema model in rats and on radiation damage of the lung. With further improvements in imaging and animal handling technology, we will be able to image faster and at higher resolutions, making MRM an even more valuable research tool.
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Affiliation(s)
- Laurence W Hedlund
- Center for In Vivo Microscopy, Box 3302, Duke University Medical Center, Durham, NC 27710, USA.
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6
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Maï W, Badea CT, Wheeler CT, Hedlund LW, Johnson GA. Effects of breathing and cardiac motion on spatial resolution in the microscopic imaging of rodents. Magn Reson Med 2005; 53:858-65. [PMID: 15799053 DOI: 10.1002/mrm.20400] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
One can acquire high-resolution pulmonary and cardiac images in live rodents with MR microscopy by synchronizing the image acquisition to the breathing cycle across multiple breaths, and gating to the cardiac cycle. The precision with which one can synchronize image acquisition to the motion defines the ultimate resolution limit that can be attained in such studies. The present work was performed to evaluate how reliably the pulmonary and cardiac structures return to the same position from breath to breath and beat to beat across the prolonged period required for MR microscopy. Radiopaque beads were surgically glued to the abdominal surface of the diaphragm and on the cardiac ventricles of anesthetized, mechanically ventilated rats. We evaluated the range of motion for the beads (relative to a reference vertebral bead) using digital microradiography with two specific biological gating methods: 1) ventilation synchronous acquisition, and 2) both ventilation synchronous and cardiac-gated acquisitions. The standard deviation (SD) of the displacement was < or =100 microm, which is comparable to the resolution limit for in vivo MRI imposed by signal-to-noise ratio (SNR) constraints. With careful control of motion, its impact on resolution can be limited. This work provides the first quantitative measure of the motion-imposed resolution limits for in vivo imaging.
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Affiliation(s)
- Wilfried Maï
- Center for In Vivo Microscopy, Box 3302, Duke University Medical Center, Durham, NC 27710, USA
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7
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Abstract
This review emphasizes some of the challenges and benefits of in vivo imaging of the small animal lung. Because mechanical ventilation plays a key role in high-quality, high-resolution imaging of the small animal lung, the article focuses particularly on the problems of ventilation support, control of breathing motion and lung volume, and imaging during different phases of the breathing cycle. Solutions for these problems are discussed primarily in relation to magnetic resonance imaging, both conventional proton imaging and the newer, hyperpolarized helium imaging of pulmonary airways. Examples of applications of these imaging solutions to normal and diseased lung are illustrated in the rat and guinea pig. Although difficult to perform, pulmonary imaging in the small animal can be a valuable source of information not only for the normal lung, but also for the lung challenged by disease.
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Affiliation(s)
- Laurence W Hedlund
- Department of Radiology, Center for In Vivo Microscopy, Duke University Medical Center, Durham, NC, USA
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8
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Benveniste H, Blackband S. MR microscopy and high resolution small animal MRI: applications in neuroscience research. Prog Neurobiol 2002; 67:393-420. [PMID: 12234501 DOI: 10.1016/s0301-0082(02)00020-5] [Citation(s) in RCA: 168] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
The application of magnetic resonance (MR) imaging in the study of human disease using small animals has steadily evolved over the past two decades and strongly established the fields of "small animal MR imaging" and "MR microscopy." An increasing number of neuroscience related investigations now implement MR microscopy in their experiments. Research areas of growth pertaining to MR microscopy studies are focused on (1). phenotyping of genetically engineered mice models of human neurological diseases and (2). rodent brain atlases. MR microscopy can be performed in vitro on tissue specimens, ex vivo on brain slice preparations and in vivo (typically on rodents). Like most new imaging technologies, MR microscopy is technologically demanding and requires broad expertise. Uniform guidelines or "standards" of a given MR microscopy experiment are non-existent. The main focus therefore of this review will be on biological applications of MR microscopy and the experimental requirements. We also take a critical look at the biological information that small animal (rodent) MR imaging has provided in neuroscience research.
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Affiliation(s)
- Helene Benveniste
- Medical Department, Brookhaven National Laboratory, Building 490, 30 Bell Avenue, Upton, NY 11793, USA.
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9
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Hedlund LW, Cofer GP, Owen SJ, Allan Johnson G. MR-compatible ventilator for small animals: computer-controlled ventilation for proton and noble gas imaging. Magn Reson Imaging 2000; 18:753-9. [PMID: 10930785 DOI: 10.1016/s0730-725x(00)00154-5] [Citation(s) in RCA: 61] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
We describe an MR-compatible ventilator that is computer controlled to generate a variety of breathing patterns, to minimize image degrading effects of breathing motion, and to support delivery of gas anesthesia and experimental inhalational gases. A key feature of this ventilator is the breathing valve that attaches directly to the endotracheal tube to reduce dead volume and allows independent control of inspiratory and expiratory phases of ventilation. This ventilator has been used in a wide variety of MR and x-ray microscopy studies of small animals, especially for MR imaging the lungs with hyperpolarized gases ((3)He & (129)Xe).
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Affiliation(s)
- L W Hedlund
- Center for In Vivo Microscopy, Department of Radiology, Duke University Medical Center, Durham, NC 27710, USA.
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10
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Qiu HH, Cofer GP, Hedlund LW, Johnson GA. Automated feedback control of body temperature for small animal studies with MR microscopy. IEEE Trans Biomed Eng 1997; 44:1107-13. [PMID: 9353990 DOI: 10.1109/10.641338] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
A temperature control system consisting of a thermistor, signal processor, and computer algorithm was developed for magnetic resonance (MR) microscopy of small live animals. With control of body temperature within +/- 0.2 degree C of the set point, heart rate is stabilized and, in turn, repetition time (TR) during cardiac-gated studies is less variable. Thus, image quality and resolution are improved.
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Affiliation(s)
- H H Qiu
- Department of Radiology, Duke University Medical Center, Durham, NC 27710, USA
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11
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Qiu H, Hedlund LW, Gewalt SL, Benveniste H, Bare TM, Johnson GA. Progression of a focal ischemic lesion in rat brain during treatment with a novel glycine/NMDA antagonist: an in vivo three-dimensional diffusion-weighted MR microscopy study. J Magn Reson Imaging 1997; 7:739-44. [PMID: 9243396 DOI: 10.1002/jmri.1880070421] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023] Open
Abstract
Stroke was induced in two groups of anesthetized rats by occlusion of the middle cerebral artery (MCA) and ipsilateral common carotid artery. Group 1 (control) received vehicle and group 2 received the glycine N-methyl-D-aspartate (NMDA) antagonist ZD9379. Stroke volume was assessed by three-dimensional diffusion-weighted MR microscopy at 2.5 and 6 hours of MCA occlusion. At 2.5 hours, stroke volumes were identical in the two groups. At 6 hours, stroke volumes had increased by 15% in the control group; in contrast, the treated group showed a 40% reduced stroke volume. Conclusions from this in vivo study were as follows: (a) our technique allows more efficient and accurate measurement of stroke volume with an improvement in resolution over a previous method; (b) the ability to measure stroke volume at multiple time points shows volume change and assessment of time dependency of drug treatment; (c) at 6 hours, the glycine antagonist ZD9379 reduced stroke volume by 40%.
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Affiliation(s)
- H Qiu
- Center for In Vivo Microscopy, Duke University Medical Center, Durham, NC 27710, USA
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12
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Lemieux SK, Glover GH. An infrared device for monitoring the respiration of small rodents during magnetic resonance imaging. J Magn Reson Imaging 1996; 6:561-4. [PMID: 8724423 DOI: 10.1002/jmri.1880060321] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023] Open
Abstract
A device that uses infrared reflectometry for monitoring the respiratory waveform of small rodents during MRI was developed. This system uses a photoplethysmograph coupled to the animal by a light pipe to detect movements as small as 1.0 mm. This device can also be used for monitoring larger animals or for controlling respiratory-compensated or respiratory-triggered MRI.
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Affiliation(s)
- S K Lemieux
- Temple University School of Medicine, Department of Diagnostic Imaging, Philadelphia, PA 19140, USA
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13
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Grove JR, Behbin A, Kost J. Modified ventilator with logic controller for cardiorespiratory synchronisation of magnetic resonance imaging in small animals. Med Biol Eng Comput 1995; 33:104-7. [PMID: 7616770 DOI: 10.1007/bf02522956] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Affiliation(s)
- J R Grove
- University of California, Davis 95616, USA
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14
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Mellin AF, Cofer GP, Smith BR, Suddarth SA, Hedlund LW, Johnson GA. Three dimensional magnetic resonance microangiography of rat neurovasculature. Magn Reson Med 1994; 32:199-205. [PMID: 7968442 DOI: 10.1002/mrm.1910320208] [Citation(s) in RCA: 23] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Techniques are described to perform three dimensional (3D) MR microangiography. We have combined the use of a blood pool agent (Gd-DTPA-complexed with bovine serum albumin), three dimensional Fourier encoding, careful animal stabilization, and volume rendering to permit imaging with voxels of 60 x 60 x 60 microns. 3DFT encoding has been performed at 7.1 T with very large arrays (256 x 512 x 512). Interactive volume rendering allows a number of unique display opportunities that effectively exploit these isotropic 3D arrays.
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Affiliation(s)
- A F Mellin
- Department of Radiology, Duke University Medical Center, Durham, North Carolina 27710
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15
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Zhou X, Maronpot RR, Cofer GP, Hedlund LW, Johnson GA. Studies on bromobenzene-induced hepatotoxicity using in vivo MR microscopy with surgically implanted RF coils. Magn Reson Med 1994; 31:619-27. [PMID: 8057814 DOI: 10.1002/mrm.1910310607] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Using surgically implanted RF coils at 300 MHz, three-dimensional microscopic MR images of rat liver were obtained in vivo to follow the development of pathology induced by bromobenzene exposure. Formalin fixed specimens of liver from these animals were also imaged using in vitro MR microscopy, followed by conventional optical microscopy. All MR images were acquired using a spin-warp pulse sequence with TR = 950 ms and TE = 23 ms. The in vivo images were reconstructed as 256(2) x 32 arrays with a voxel size of (50 microns)2 x 219 microns, while the in vitro images were reconstructed as 256(2) x 128 arrays, giving an isotropic resolution at (39 microns)3. Based on results from six animals, we have found in all animals exposed to bromobenzene, image intensity decreased in specific hepatic tissue regions. These regions were well correlated to low signal intensity areas observed in in vitro MR images at higher resolution. Conventional optical microscopy indicated that the low signal intensity regions corresponded to areas of necrosis. The decrease in signal intensity is consistent with increased local diffusion coefficients as a result of necrosis. This study demonstrates that MR microscopy with implanted RF coils can be successfully used to follow tissue pathological changes in living tissues.
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Affiliation(s)
- X Zhou
- Department of Radiology, Duke University Medical Center, Durham, North Carolina 27710
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16
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Abstract
Fast spin-echo imaging has been investigated with attention to the requirements and opportunities for high-field MR microscopy. Two- and three-dimensional versions were implemented at 2.0 T, 7.1 T, and 9.4 T. At these fields, at least eight echoes were collectable with a 10 ms TE from fixed tissue specimens and living animals, giving an eightfold improvement in imaging efficiency. To reduce the phase-encoding gradient amplitude and its duty cycle, a modified pulse sequence with phase accumulation was developed. Images obtained using this pulse sequence exhibited comparable signal-to-noise (SNR) to those obtained from the conventional fast spin-echo pulse sequences. Signal losses due to imperfections in RF pulses and lack of phase rewinders were offset in this sequence by reduced diffusion losses incurred with the gradients required for MR microscopy. Image SNR, contrast, edge effects and spatial resolution for three k-space sampling schemes were studied experimentally and theoretically. One method of sampling k-space, 4-GROUP FSE, was found particularly useful in producing varied T2 contrast at high field. Two-dimensional images of tissue specimens were obtained in a total acquisition time of 1 to 2 min with in-plane resolution between 30 to 70 microns, and 3D images with 256(3) arrays were acquired from fixed rat brain tissue (isotropic voxel = 70 microns) and a living rat (isotropic voxel = 117 microns) in approximately 4.5 h.
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Affiliation(s)
- X Zhou
- Department of Radiology, Duke University Medical Center, Durham, North Carolina 27710
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17
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Gewalt SL, Glover GH, Hedlund LW, Cofer GP, MacFall JR, Johnson GA. MR microscopy of the rat lung using projection reconstruction. Magn Reson Med 1993; 29:99-106. [PMID: 8419748 DOI: 10.1002/mrm.1910290117] [Citation(s) in RCA: 88] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
Projection reconstruction has been implemented with self-refocused selection pulses on a small bore, 2.0 T MR microscope, to allow imaging of lung parenchyma. Scan synchronous ventilation and cardiac gating have been integrated with the sequence to minimize motion artifacts. A systematic survey of the pulse sequence parameters has been undertaken in conjunction with the biological gating parameters to optimize resolution and signal-to-noise (SNR). The resulting projection images with effective echo time of < 300 microseconds allow definition of lung parenchyma with an SNR improvement of approximately 15 x over a more conventional 2DFT short echo gradient sequence.
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Affiliation(s)
- S L Gewalt
- Department of Radiology, Duke University Medical Center, Durham, North Carolina 27710
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18
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Pruski JC, Abduljalil A, Robitaille PM. Improved cardiac gating and ventilation timing in animal experiments. Magn Reson Med 1992; 27:329-37. [PMID: 1461116 DOI: 10.1002/mrm.1910270212] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
In this work we present an improved solution for cardiac gating and ventilation timing in in vivo spectroscopic and imaging experiments. This approach makes use of a pulse conditioner to extract primary timing signals from noisy and fluctuating input signals. A timing controller is then used to set all additional timing outputs. Full feedback control is utilized in this timing controller to optimize both magnetic resonance and respiratory timing. Feedback control also helps ensure that timing errors will not occur during acquisition.
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Affiliation(s)
- J C Pruski
- Department of Radiology, Ohio State University, Columbus 43210
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19
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Abstract
An inductively coupled surface coil for imaging the rat spine at 7 T is described. This planar circular probe was made from microwave substrate to limit the size of the coil and to minimize the magnetic susceptibility. The surface coil was used as a single transmit/receive coil and as a receive-only coil with a birdcage body coil for excitation. The signal-to-noise ratio (SNR) of the probe was compared to a 5-cm birdcage coil and exceeded the birdcage coil's SNR by three to six times at superficial structures. The main advantages of the probe are an improved SNR for superficial structures and a simple design and use. Images with 50 x 50 x 500 micron voxels were obtained of the rat spine with excellent anatomical detail.
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Affiliation(s)
- M L Banson
- Center for In Vivo Microscopy, Duke University Medical Center, Durham, NC 27710
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20
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Maki JH, Benveniste H, MacFall JR, Piantadosi CA, Johnson GA. MR imaging of microcirculation in rat brain: correlation with carbon dioxide-induced changes in blood flow. J Magn Reson Imaging 1991; 1:673-81. [PMID: 1823172 DOI: 10.1002/jmri.1880010609] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022] Open
Abstract
Considerable interest has been shown in developing a magnetic resonance (MR) imaging technique with quantitative capability in the evaluation of tissue microcirculation ("perfusion"). In the present study, the flow-dephased/flow-compensated (FD/FC) technique is evaluated for measuring rat cerebral blood flow (CBF) under nearly optimal laboratory conditions. Imaging was performed on a 2.0-T system equipped with shielded gradient coils. Rat CBF was varied by manipulating arterial carbon dioxide pressure (PaCO2). In parallel experiments, optimized MR imaging studies (seven rats) were compared with laser Doppler flowmetry (LDF) studies (nine rats). LDF values showed a high degree of correlation between CBF and PaCO2, agreeing with results in the literature. MR imaging values, while correlating with PaCO2, showed considerable scatter. The most likely explanation is unavoidable rat motion during the requisite long imaging times. Because of this motion sensitivity, the FD/FC technique cannot provide a quantitative measure of CBF. It can, however, provide a qualitative picture.
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Affiliation(s)
- J H Maki
- Department of Radiology, Duke University Medical Center, Durham, NC 27710
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21
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MacFall JR, Maki JH, Johnson GA, Hedlund LW, Cofer GP. Pre- and postmortem diffusion coefficients in rat neural and muscle tissues. Magn Reson Med 1991; 20:89-99. [PMID: 1943665 DOI: 10.1002/mrm.1910200110] [Citation(s) in RCA: 26] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
Pulsed gradient diffusion-weighted spin-echo images (7 to 11 gradient strengths) were obtained in a coronal slice through the midbrain for five normal adult white rats before and after sacrifice in a 2-T CSI system with air temperature control. The pulse sequence was cardiac gated and respiratory synchronized in order to minimize motion artifacts (Tr greater than 2 s. Te = 30 ms). Diffusion coefficients reflecting several tissue compartments (D*) in brain and muscle were calculated and referenced to simultaneously imaged tubes of water. In the living animals, brain cortical matter had a value of D* = (0.82 +/- 0.02) x 10(-3) mm2/s. deeper brain regions had a value of D* = (0.73 +/- 0.02) x 10(-3) mm2/s, and the muscle had a value of D* = (1.4 +/- 0.1) x 10(-3) mm2/s. Postmortem the values in brain dropped by approximately 30%, while remaining constant in muscle. Signal intensity in the spin-echo images for muscle tissue rose by 50% over a 1- to 2-h interval after sacrifice while that of brain tissue remained relatively stable.
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Affiliation(s)
- J R MacFall
- Department of Radiology, Duke University, Durham, North Carolina 27710
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22
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Benveniste H, Cofer GP, Piantadosi CA, Davis JN, Johnson GA. Quantitative proton magnetic resonance imaging in focal cerebral ischemia in rat brain. Stroke 1991; 22:259-68. [PMID: 2003291 DOI: 10.1161/01.str.22.2.259] [Citation(s) in RCA: 26] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
Proton magnetic resonance (MR) imaging has been recommended as a diagnostic tool for the detection of focal cerebral ischemia. We compared microscopic MR images of rat brains after focal cerebral ischemia with evidence of histological damage found on corresponding silver-impregnated or cresyl violet-stained brain sections. Ten male Wistar rats were subjected to permanent unilateral occlusions of the right middle cerebral and common carotid arteries under halothane anesthesia. Twenty-four hours later the area of injury on MR images amounted to 26% of the total slice area, whereas only 9% of the total slice area was necrotic on histological sections from the same animals. The infarcted areas on tissue sections were surrounded by regions of selective neuronal injury in the cerebral cortex and occasionally in the hippocampus. The area of injury on MR images was larger than the combined areas of infarction and selective neuronal injury on histological sections. Areas of increased T2 values on MR images extended medially into noninfarcted striatum and laterally and dorsally into noninfarcted cortex. The lateral and dorsal areas on MR images frequently coincided with cortical areas in which considerable selective neuronal injury was present in the upper cortical layers. We hypothesize that the abnormal areas on MR images above histologically normal brain tissue represent the ischemic penumbra. If true, this is the first demonstration of the ischemic penumbra by MR imaging and may reflect our use of Wistar rats, a new image analysis technique, and ultra-high resolution MR imaging.
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Affiliation(s)
- H Benveniste
- Department of Medicine (Neurology), Duke University Medical Center, Durham, N.C. 27710
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23
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Maki JH, Benveniste H, MacFall JR, Johnson GA. Maximization of contrast-to-noise ratio to distinguish diffusion and microcirculatory flow. J Magn Reson Imaging 1991; 1:39-46. [PMID: 1802129 DOI: 10.1002/jmri.1880010105] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022] Open
Abstract
Optimization of the contrast-to-noise ratio (CNR) is described for microcirculation magnetic resonance (MR) imaging techniques based on flow-compensated/flow-dephased sequences, both with and without even-echo rephasing. The authors present the most advantageous manner of applying flow-dephased gradients, such that dephasing is maximal while diffusion losses are minimal. The theoretical considerations include phase, diffusion, echo time, and bandwidth in the determination of the optimal parameters for microcirculation imaging. Studies in phantoms consisting of stationary and flowing copper sulfate in Sephadex columns demonstrate the validity of the calculations. Optimized in vivo images of a rat stroke model demonstrate the potential of the flow-compensated/flow-dephased technique and the importance of optimizing CNR.
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Affiliation(s)
- J H Maki
- Department of Radiology, Duke University Medical Center, Durham, NC 27710
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Maki JH, MacFall JR, Johnson GA. The use of gradient flow compensation to separate diffusion and microcirculatory flow in MRI. Magn Reson Med 1991; 17:95-107. [PMID: 1712421 DOI: 10.1002/mrm.1910170114] [Citation(s) in RCA: 57] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
This paper describes a new MR imaging technique termed Modified Stejskal Tanner versus Flow Compensation (MST/FC) for the separation of diffusion and microcirculatory flow. The theory behind the sequence is explained, along with a five-component model of microcirculation applicable to any "perfusion" imaging technique. Phantom data is presented showing that (1) diffusion effects can be matched between MST and FC (suggesting the possibility of flow-compensated diffusion imaging), and (2) the technique is a quantitative method of separating diffusion and slow (less than 0.25 mm/s) tortuous flow through a Sephadex column. Furthermore, animal images show the technique to be feasible and quantitative in measuring rat brain microcirculation under normal, vasodilated (hypercarbia), and no-flow (post mortem) conditions.
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Affiliation(s)
- J H Maki
- Duke University Medical Center, Durham, North Carolina 27710
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25
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Stern RL, Johnson GA, Ravin CE. Magnetic resonance imaging of the thoracic cavity using a paused 3DFT acquisition technique. Magn Reson Imaging 1990; 8:747-53. [PMID: 2266801 DOI: 10.1016/0730-725x(90)90010-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
A new pulse sequence designed for magnetic resonance imaging of the entire thoracic cavity is described. This sequence, called 3DPAUSE, is a rapid three-dimensional Fourier transform (3DFT) sequences with periodic pauses for breathing and additional rf pulses after each pause to restore the magnetization to steady-state before data acquisition resumes. Cardiac motion artifacts are effectively removed by signal averaging. Respiratory motion artifacts are removed by breath hold. Image artifacts caused by an inadequate number of pauses or by inappropriate placement of the pauses within a scan are shown, and ways to avoid these artifacts are discussed. 3DPAUSE provides the ability to acquire three-dimensional arrays in the thoracic cavity with minimal artifacts from respiratory and cardiac motions in a clinically reasonable time.
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Affiliation(s)
- R L Stern
- Duke University Medical Center, Durham, North Carolina 27710
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26
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Cutillo AG, Morris AH, Ailion DC, Durney CH. Clinical implications of nuclear magnetic resonance lung research. Chest 1989; 96:643-52. [PMID: 2670470 DOI: 10.1378/chest.96.3.643] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
Affiliation(s)
- A G Cutillo
- Department of Internal Medicine, University of Utah, Salt Lake City
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27
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Johnson GA, Thompson MB, Cofer GP, Campen D, Maronpot RR. Magnetic resonance imaging of hepatic neoplasms in the rat. Vet Pathol 1989; 26:303-8. [PMID: 2763419 DOI: 10.1177/030098588902600403] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
Magnetic resonance imaging (MRI) at microscopic resolution was done on a live rat that had chemically induced hepatic neoplasms. Beginning at the anterior aspect of the liver, 16 contiguous transaxial slices (each 1.25 mm thick) were produced using three-dimensional Fourier transform sequences. The rat had been treated with diethylnitrosamine (200 mg/kg) at 70 days of age, and, subsequently, received periodic implants of 17a-ethynylestradiol for 60 weeks. Carr-Purcell-Meiboom-Gill (CPMG) sequences (repetition time = 2,000 and echo time = 20, 40, 60, 80 ms) were done to give quantitative measures of spin-spin relaxation times (T2). Pixel-by-pixel curve fitting from these multiple images yielded calculated T2 images. Histologic evaluation of three abnormal areas in the liver revealed solid and cystic hepatocellular adenomas. Although lesions were evident in early-echo images of the CPMG sequence, they were more apparent in the late-echo images. This was consistent with longer T2 relaxation times for the lesions. The voxels of dimensions (230 x 230 x 1,250 microns) permitted resolution of volume elements less than 0.07 mm3. This in turn permitted clear delineation of focal lesions less than 3 mm in diameter. The potential for MRI at microscopic resolution in toxicologic research is clearly demonstrated.
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Affiliation(s)
- G A Johnson
- Department of Radiology, Duke University Medical Center, Durham, NC
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28
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Farmer TH, Johnson GA, Cofer GP, Maronpot RR, Dixon D, Hedlund LW. Implanted coil MR microscopy of renal pathology. Magn Reson Med 1989; 10:310-23. [PMID: 2733588 DOI: 10.1002/mrm.1910100304] [Citation(s) in RCA: 28] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
Inductively coupled implanted coils have been shown to provide up to a 10-fold increase in signal-to-noise ratio when compared to whole-body imaging of small animals. The current study was designed to extend the implanted coil imaging technique to a rodent model of renal pathology. Resonant radiofrequency (RF) coils were implanted around the left kidney of four rats and inductively coupled from within a birdcage body coil. All images were acquired at 2 T using a T1-weighted spin-echo sequence with TR = 500 ms and TE = 20 ms. In vivo MR microscopy with voxels of 117 x 117 x 2000 microns demonstrated cortex, inner and outer medulla, and major vascular structures on baseline images. Mercuric chloride-induced nephrotoxic acute tubular necrosis (ATN) diminished cortico-medullary contrast at 24 h after dosing with pathologic evaluation demonstrating nephrotoxic changes in the inner cortex. The kidney regained a baseline MR appearance 360 h after dosing and resolution of the damage was confirmed with histology. T1 data were gathered on excised kidneys as an adjunct to the images to help correlate the loss and return of cortico-medullary contrast with the pathology and pathophysiology of nephrotoxic ATN. With implanted RF coils we were able to demonstrate renal pathology and follow its subsequent resolution. Specifically, loss and return of cortico-medullary contrast as a result of nephrotoxic ATN were serially documented in four rats. Such serial in vivo studies performed on single animals should further the use of MR microscopy by minimizing the number of animals required for adequate biostatistics.
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Affiliation(s)
- T H Farmer
- Duke University Medical Center, Durham, North Carolina 27710
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29
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Abstract
A simple design is proposed to suppress the noise pickup in the ECG leads from RF and gradient pulses during NMR imaging. The ECG signal is passed through a low-pass filter and a common-mode-rejection amplifier to reduce erroneous signal generated by the electrical ground loops. The output is gated through a CMOS switch to blank the preamplifier from the NMR during data acquisition.
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Affiliation(s)
- A N Shetty
- Eugene P. Pendergrass Diagnostic Radiology Research Laboratories, Department of Radiology, University of Pennsylvania, Philadelphia 19104-6086
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31
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Dixon D, Johnson GA, Cofer GP, Hedlund LW, Maronpot RR. Magnetic resonance imaging (MRI): a new tool in experimental toxicologic pathology. Toxicol Pathol 1988; 16:386-91. [PMID: 3194661 DOI: 10.1177/019262338801600311] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
Magnetic Resonance Imaging (MRI) is a noninvasive imaging technique that provides multidimensional images of the soft tissues of the body. This imaging technique has proven to be an excellent diagnostic and experimental tool for the detection of pathologic alterations in soft tissues, as well as an adjunct screening method for following the genesis, progression, or regression of chemically induced lesions in the same live animal. Future applications of MRI technology in small animals include MRI microscopy, mapping of vascular or circulatory alterations, measurement of perfusion and diffusion rates of body fluids, and acquisition of cell metabolic states in combination with Nuclear Magnetic Resonance (NMR) spectroscopy, all of which will contribute immensely to the advancement of toxicologic and biomolecular research.
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Affiliation(s)
- D Dixon
- National Institute of Environmental Health Sciences, Research Triangle Park, North Carolina 27709
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Bottomley PA, Smith LS, Brazzamano S, Hedlund LW, Redington RW, Herfkens RJ. The fate of inorganic phosphate and pH in regional myocardial ischemia and infarction: a noninvasive 31P NMR study. Magn Reson Med 1987; 5:129-42. [PMID: 3657502 DOI: 10.1002/mrm.1910050205] [Citation(s) in RCA: 33] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
To determine the characteristic appearance of phosphorus (31P) nuclear magnetic resonance spectra in acute and chronic myocardial infarction in situ, cardiac-gated depth-resolved surface coil spectroscopy (DRESS) at 1.5 T was used to monitor 31P NMR spectra from localized volumes in the left anterior canine myocardium for up to 5 days following permanent occlusion of the left anterior descending coronary artery. Coronary occlusion initially produced regional ischemia manifested as significant reductions in the phosphocreatine (PCr) to inorganic phosphate (Pi) ratios and intracellular pH (P less than 0.05, Student's t test) in endocardially displaced spectra acquired in periods as short as 50 to 150 s postocclusion. Spectra acquired subsequently revealed either (i) restoration of near-normal phosphate metabolism sometime between 10 and about 50 min postocclusion or (ii) advancing ischemic phosphate metabolism at about an hour postocclusion, and/or (iii) maintenance of depressed PCr/Pi ratios for up to 5 days postocclusion with a return of the apparent pH to near normal values between 6 and 15 h postocclusion. Postmortem examination of animals exhibiting the first type of behavior revealed the existence of coronary collateral vessels. The last type of behavior indicates that Pi remains substantially localized in damaged myocardium for days following infarction. The location and size of infarctions were determined postmortem by staining excised hearts. The smallest infarctions detected by 31P DRESS weighed 4.9 and 7.5 g. The most acidic pH measured in vivo was 5.9 +/- 0.2. Infarctions aged 1/2 day to 5 days were characterized by elevated but broad Pi resonances at 5.1 +/- 0.2 ppm relative to PCr and significantly depressed PCr/Pi ratios (P less than 0.002, Student's t test) relative to preocclusion values. Contamination of Pi resonances by phosphomonoester (PM) components is a significant problem for preocclusion Pi and pH measurements. These results should be applicable to the detection and identification of human myocardial infarction using 31P NMR and DRESS.
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Affiliation(s)
- P A Bottomley
- General Electric Corporate Research and Development Center, Schenectady, New York 12301
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Evans AJ, Hedlund LW, Herfkens RJ, Utz JA, Fram EK, Blinder RA. Evaluation of steady and pulsatile flow with dynamic MRI using limited flip angles and gradient refocused echoes. Magn Reson Imaging 1987; 5:475-82. [PMID: 3431358 DOI: 10.1016/0730-725x(87)90382-1] [Citation(s) in RCA: 24] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Magnetic resonance imaging sequences utilizing limited flip angles and gradient echoes yield rapid (less than 2 min) dynamic images of the cardiovascular system. These images contain both accurate anatomical and functional information. Using a gradient refocused acquisition in the steady state (GRASS) in the CINE mode, we studied the relationship between gradient echo signal intensity and velocity of steady and pulsatile flow in a phantom simulating medium to large vessels. Images were acquired on a 1.5 Tesla system (repetition time = 21 ms, echo time = 12 ms, flip angle = 30 degrees). Data from each pulse interval were sorted in 16 images. Signal intensities from flow tube lumina and surrounding stationary water jacket were used to calculate contrast ratios which were compared to velocity measurements made with electromagnetic (EM) flow probes outside the magnet room. During steady flow, signal intensity contrast ratios increased with increasing flow and in a 10 mm thick slice, reached a peak at 48 cm/s, and declined for velocities up to 90 cm/s. Changes in instantaneous velocity during pulsatile flow correlated well (r greater than .88) with signal intensity changes up to a maximum mean velocity of 17 cm/s. Total signal intensity from the lumen for an "R to R" interval correlated extremely well (r greater than .97) with mean pulsatile flow velocities up to 30 cm/s. The excellent correlation between gradient echo signal intensity and actual flow velocities suggests that this imaging sequence might be useful for evaluating normal and pathologic flow phenomena.
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Affiliation(s)
- A J Evans
- Department of Radiology, Duke University Medical Center, Durham, North Carolina 27710
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