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Macko P, Derka T, Čiamporová-Zaťovičová Z, Grabowski M, Čiampor F. Detailed DNA barcoding of mayflies in a small European country proved how far we are from having comprehensive barcode reference libraries. Mol Ecol Resour 2024; 24:e13954. [PMID: 38520175 DOI: 10.1111/1755-0998.13954] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Revised: 02/28/2024] [Accepted: 03/07/2024] [Indexed: 03/25/2024]
Abstract
Mayflies (Ephemeroptera) are among the crucial water and habitat quality bioindicators. However, despite their intensive long-term use in various studies, more reliable mayfly DNA barcode data have been produced in a negligible number of countries, and only ~40% of European species had been barcoded with less than 50% of families covered. Despite being carried out in a small area, our study presents the second-most species-rich DNA reference library of mayflies from Europe and the first comprehensive view from an important biodiversity hotspot such as the Western Carpathians. Within 1153 sequences, 76 morphologically determined species were recorded and added to the Barcode of Life Data System (BOLD) database. All obtained sequences were assigned to 97 BINs, 11 of which were unique and three represented species never barcoded before. Sequences of 16 species with high intraspecific variability were divided into 40 BINs, confirming the presence of cryptic lineages. Due to the low interspecific divergence and the non-existing barcoding gap, sequences of six species were assigned to three shared BINs. Delimitation analyses resulted in 79 and 107 putative species respectively. Bayesian and maximum-likelihood phylogenies confirmed the monophyly of almost all species and complexes of cryptic taxa and proved that DNA barcoding distinguishes almost all studied mayfly species. We have shown that it is still sufficient to thoroughly investigate the fauna of a small but geographically important area to enrich global databases greatly. In particular, the insights gained here transcend the local context and may have broader implications for advancing barcoding efforts.
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Affiliation(s)
- Patrik Macko
- Department of Ecology, Faculty of Natural Sciences, Comenius University in Bratislava, Bratislava, Slovak Republic
| | - Tomáš Derka
- Department of Ecology, Faculty of Natural Sciences, Comenius University in Bratislava, Bratislava, Slovak Republic
| | - Zuzana Čiamporová-Zaťovičová
- Department of Ecology, Faculty of Natural Sciences, Comenius University in Bratislava, Bratislava, Slovak Republic
- ZooLab, Plant Science and Biodiversity Centre, Slovak Academy of Sciences, Bratislava, Slovak Republic
| | - Michal Grabowski
- Department of Invertebrate Zoology and Hydrobiology, Faculty of Biology and Environmental Protection, University of Łódź, Łódź, Poland
| | - Fedor Čiampor
- ZooLab, Plant Science and Biodiversity Centre, Slovak Academy of Sciences, Bratislava, Slovak Republic
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2
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van Schrojenstein Lantman IM, Vesterinen EJ, Hertzog LR, Martel A, Verheyen K, Lens L, Bonte D. Body size and tree species composition determine variation in prey consumption in a forest-inhabiting generalist predator. Ecol Evol 2021; 11:8295-8309. [PMID: 34188887 PMCID: PMC8216911 DOI: 10.1002/ece3.7659] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2020] [Revised: 04/19/2021] [Accepted: 04/19/2021] [Indexed: 11/14/2022] Open
Abstract
Trophic interactions may strongly depend on body size and environmental variation, but this prediction has been seldom tested in nature. Many spiders are generalist predators that use webs to intercept flying prey. The size and mesh of orb webs increases with spider size, allowing a more efficient predation on larger prey. We studied to this extent the orb-weaving spider Araneus diadematus inhabiting forest fragments differing in edge distance, tree diversity, and tree species. These environmental variables are known to correlate with insect composition, richness, and abundance. We anticipated these forest characteristics to be a principle driver of prey consumption. We additionally hypothesized them to impact spider size at maturity and expect shifts toward larger prey size distributions in larger individuals independently from the environmental context. We quantified spider diet by means of metabarcoding of nearly 1,000 A. diadematus from a total of 53 forest plots. This approach allowed a massive screening of consumption dynamics in nature, though at the cost of identifying the exact prey identity, as well as their abundance and putative intraspecific variation. Our study confirmed A. diadematus as a generalist predator, with more than 300 prey ZOTUs detected in total. At the individual level, we found large spiders to consume fewer different species, but adding larger species to their diet. Tree species composition affected both prey species richness and size in the spider's diet, although tree diversity per se had no influence on the consumed prey. Edges had an indirect effect on the spider diet as spiders closer to the forest edge were larger and therefore consumed larger prey. We conclude that both intraspecific size variation and tree species composition shape the consumed prey of this generalist predator.
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Affiliation(s)
| | - Eero J. Vesterinen
- Spatial Foodweb Ecology GroupDepartment of Agricultural SciencesUniversity of HelsinkiHelsinkiFinland
- Department of EcologySwedish University of Agricultural SciencesUppsalaSweden
- Department of BiologyUniversity of TurkuTurkuFinland
| | - Lionel R. Hertzog
- Terrestrial Ecology UnitDepartment of BiologyGhent UniversityGentBelgium
- Thünen Institut for BiodiversityBraunschweigGermany
- Department Pathology, Bacteriology and Avian DiseasesGhent UniversityMerelbekeBelgium
| | - An Martel
- Thünen Institut for BiodiversityBraunschweigGermany
- Department Pathology, Bacteriology and Avian DiseasesGhent UniversityMerelbekeBelgium
| | - Kris Verheyen
- Forest & Nature LabDepartment of EnvironmentGhent UniversityGontrodeBelgium
| | - Luc Lens
- Terrestrial Ecology UnitDepartment of BiologyGhent UniversityGentBelgium
| | - Dries Bonte
- Terrestrial Ecology UnitDepartment of BiologyGhent UniversityGentBelgium
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Eitzinger B, Roslin T, Vesterinen EJ, Robinson SI, O'Gorman EJ. Temperature affects both the Grinnellian and Eltonian dimensions of ecological niches – A tale of two Arctic wolf spiders. Basic Appl Ecol 2021. [DOI: 10.1016/j.baae.2021.01.001] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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Vesterinen EJ, Kaunisto KM, Lilley TM. A global class reunion with multiple groups feasting on the declining insect smorgasbord. Sci Rep 2020; 10:16595. [PMID: 33024156 PMCID: PMC7539006 DOI: 10.1038/s41598-020-73609-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2020] [Accepted: 09/15/2020] [Indexed: 12/05/2022] Open
Abstract
We report a detection of a surprising similarity in the diet of predators across distant phyla. Though just a first glimpse into the subject, our discovery contradicts traditional aspects of biology, as the earliest notions in ecology have linked the most severe competition of resources with evolutionary relatedness. We argue that our finding deserves more research, and propose a plan to reveal more information on the current biodiversity loss around the world. While doing so, we expand the recently proposed conservation roadmaps into a parallel study of global interaction networks.
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Affiliation(s)
- Eero J Vesterinen
- Department of Biology, University of Turku, Turku, Finland.
- Department of Ecology, Swedish University of Agricultural Sciences, Uppsala, Sweden.
| | | | - Thomas M Lilley
- Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland
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Gillespie MAK, Alfredsson M, Barrio IC, Bowden J, Convey P, Coulson SJ, Culler LE, Dahl MT, Daly KM, Koponen S, Loboda S, Marusik Y, Sandström JP, Sikes DS, Slowik J, Høye TT. Circumpolar terrestrial arthropod monitoring: A review of ongoing activities, opportunities and challenges, with a focus on spiders. AMBIO 2020; 49:704-717. [PMID: 31030417 PMCID: PMC6989709 DOI: 10.1007/s13280-019-01185-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2018] [Revised: 02/15/2019] [Accepted: 04/05/2019] [Indexed: 05/26/2023]
Abstract
The terrestrial chapter of the Circumpolar Biodiversity Monitoring Programme (CBMP) has the potential to bring international multi-taxon, long-term monitoring together, but detailed fundamental species information for Arctic arthropods lags far behind that for vertebrates and plants. In this paper, we demonstrate this major challenge to the CBMP by focussing on spiders (Order: Araneae) as an example group. We collate available circumpolar data on the distribution of spiders and highlight the current monitoring opportunities and identify the key knowledge gaps to address before monitoring can become efficient. We found spider data to be more complete than data for other taxa, but still variable in quality and availability between Arctic regions, highlighting the need for greater international co-operation for baseline studies and data sharing. There is also a dearth of long-term datasets for spiders and other arthropod groups from which to assess status and trends of biodiversity. Therefore, baseline studies should be conducted at all monitoring stations and we make recommendations for the development of the CBMP in relation to terrestrial arthropods more generally.
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Affiliation(s)
- Mark A. K. Gillespie
- Department of Environmental Science, Western Norway University of Applied Sciences, Sogndal Campus, 6851 Sogndal, Norway
| | - Matthias Alfredsson
- The Icelandic Institute of Natural History, Urridaholtsstraeti 6–8, 210 Gardabaer, Iceland
| | - Isabel C. Barrio
- Department of Life and Environmental Sciences, University of Iceland, Sturlugata 7, 101 Reykjavík, Iceland
- Department of Natural Resources and Environmental Sciences, Agricultural University of Iceland, Árleyni 22, Keldnaholt, 112 Reykjavík, Iceland
| | - Joe Bowden
- Arctic Research Centre, Aarhus University, Ny Munkegade 114, Bldg. 1540, 8000 Aarhus C, Denmark
- Present Address: Canadian Forest Service – Atlantic Forestry Centre, 26 University Drive, PO Box 960, Corner Brook, NL A2H 6J3 Canada
| | - Peter Convey
- British Antarctic Survey, NERC, High Cross, Madingley Road, Cambridge, CB3 0ET UK
| | - Stephen J. Coulson
- Swedish Species Information Centre, Swedish University of Agricultural Sciences, 750 07 Uppsala, Sweden
| | - Lauren E. Culler
- Environmental Studies Program, Dartmouth College, 113 Steele Hall, Hanover, NH 03755 USA
- Institute of Arctic Studies, Dartmouth College, 6214 Haldeman Center, Hanover, NH 03755 USA
| | | | - Kathryn M. Daly
- University of Alaska Museum, University of Alaska Fairbanks, Fairbanks, AK 99775-6960 USA
| | - Seppo Koponen
- Zoological Museum, Biodiversity Unit, University of Turku, 20014 Turku, Finland
| | - Sarah Loboda
- Department of Natural Resource Sciences, McGill University, Ste-Anne-de-Bellevue, QC Canada
| | - Yuri Marusik
- Institute for Biological Problems of the North RAS, Portovaya Str. 18, Magadan, Russia 685000
- Department of Zoology & Entomology, University of the Free State, Bloemfontein, 9300 South Africa
| | - Jonas P. Sandström
- Swedish Species Information Centre, Swedish University of Agricultural Sciences, 750 07 Uppsala, Sweden
| | - Derek S. Sikes
- University of Alaska Museum, University of Alaska Fairbanks, Fairbanks, AK 99775-6960 USA
| | - Jozef Slowik
- University of Alaska Museum, University of Alaska Fairbanks, Fairbanks, AK 99775-6960 USA
| | - Toke T. Høye
- Arctic Research Centre, Aarhus University, Ny Munkegade 114, Bldg. 1540, 8000 Aarhus C, Denmark
- Department of Bioscience, Aarhus University, Grenåvej 14, 8410 Rønde, Denmark
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6
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Kennedy SR, Prost S, Overcast I, Rominger AJ, Gillespie RG, Krehenwinkel H. High-throughput sequencing for community analysis: the promise of DNA barcoding to uncover diversity, relatedness, abundances and interactions in spider communities. Dev Genes Evol 2020; 230:185-201. [PMID: 32040713 PMCID: PMC7127999 DOI: 10.1007/s00427-020-00652-x] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2019] [Accepted: 01/29/2020] [Indexed: 12/19/2022]
Abstract
Large-scale studies on community ecology are highly desirable but often difficult to accomplish due to the considerable investment of time, labor and, money required to characterize richness, abundance, relatedness, and interactions. Nonetheless, such large-scale perspectives are necessary for understanding the composition, dynamics, and resilience of biological communities. Small invertebrates play a central role in ecosystems, occupying critical positions in the food web and performing a broad variety of ecological functions. However, it has been particularly difficult to adequately characterize communities of these animals because of their exceptionally high diversity and abundance. Spiders in particular fulfill key roles as both predator and prey in terrestrial food webs and are hence an important focus of ecological studies. In recent years, large-scale community analyses have benefitted tremendously from advances in DNA barcoding technology. High-throughput sequencing (HTS), particularly DNA metabarcoding, enables community-wide analyses of diversity and interactions at unprecedented scales and at a fraction of the cost that was previously possible. Here, we review the current state of the application of these technologies to the analysis of spider communities. We discuss amplicon-based DNA barcoding and metabarcoding for the analysis of community diversity and molecular gut content analysis for assessing predator-prey relationships. We also highlight applications of the third generation sequencing technology for long read and portable DNA barcoding. We then address the development of theoretical frameworks for community-level studies, and finally highlight critical gaps and future directions for DNA analysis of spider communities.
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Affiliation(s)
- Susan R Kennedy
- Biodiversity and Biocomplexity Unit, Okinawa Institute of Science and Technology, Onna, Okinawa, Japan
| | - Stefan Prost
- LOEWE-Centre for Translational Biodiversity Genomics, Senckenberg Museum, Frankfurt, Germany
- National Zoological Garden, South African National Biodiversity Institute, Pretoria, South Africa
| | - Isaac Overcast
- Graduate Center of the City University New York, New York, NY, USA
- Ecole Normale Supérieure, Paris, France
| | | | - Rosemary G Gillespie
- Environmental Sciences Policy and Management, University of California Berkeley, Berkeley, CA, USA
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Schmidt NM, Mosbacher JB, Eitzinger B, Vesterinen EJ, Roslin T. High resistance towards herbivore-induced habitat change in a high Arctic arthropod community. Biol Lett 2019; 14:rsbl.2018.0054. [PMID: 29743265 DOI: 10.1098/rsbl.2018.0054] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2018] [Accepted: 04/18/2018] [Indexed: 01/22/2023] Open
Abstract
Mammal herbivores may exert strong impacts on plant communities, and are often key drivers of vegetation composition and diversity. We tested whether such mammal-induced changes to a high Arctic plant community are reflected in the structure of other trophic levels. Specifically, we tested whether substantial vegetation changes following the experimental exclusion of muskoxen (Ovibos moschatus) altered the composition of the arthropod community and the predator-prey interactions therein. Overall, we found no impact of muskox exclusion on the arthropod community: the diversity and abundance of both arthropod predators (spiders) and of their prey were unaffected by muskox presence, and so was the qualitative and quantitative structure of predator-prey interactions. Hence, high Arctic arthropod communities seem highly resistant towards even large biotic changes in their habitat, which we attribute to the high connectance in the food web.
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Affiliation(s)
- Niels M Schmidt
- Arctic Research Centre, Department of Bioscience, Aarhus University, 4000 Roskilde, Denmark
| | - Jesper B Mosbacher
- Arctic Research Centre, Department of Bioscience, Aarhus University, 4000 Roskilde, Denmark
| | - Bernhard Eitzinger
- Department of Agricultural Sciences, University of Helsinki, 00014, Finland
| | - Eero J Vesterinen
- Department of Agricultural Sciences, University of Helsinki, 00014, Finland.,Biodiversity Unit, University of Turku, 20014, Finland
| | - Tomas Roslin
- Department of Agricultural Sciences, University of Helsinki, 00014, Finland.,Department of Ecology, Swedish University of Agricultural Sciences, 750 07 Uppsala, Sweden
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8
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Eitzinger B, Abrego N, Gravel D, Huotari T, Vesterinen EJ, Roslin T. Assessing changes in arthropod predator–prey interactions through
DNA
‐based gut content analysis—variable environment, stable diet. Mol Ecol 2018; 28:266-280. [DOI: 10.1111/mec.14872] [Citation(s) in RCA: 43] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2018] [Accepted: 09/04/2018] [Indexed: 01/03/2023]
Affiliation(s)
- Bernhard Eitzinger
- Faculty of Agriculture and Forestry University of Helsinki Helsinki Finland
- Nature Conservation and Landscape Ecology University of Freiburg Freiburg Germany
| | - Nerea Abrego
- Faculty of Agriculture and Forestry University of Helsinki Helsinki Finland
| | - Dominique Gravel
- Département de biologie Université de Sherbrooke Sherbrooke Quebec Canada
| | - Tea Huotari
- Faculty of Agriculture and Forestry University of Helsinki Helsinki Finland
| | - Eero J Vesterinen
- Faculty of Agriculture and Forestry University of Helsinki Helsinki Finland
- Biodiversity Unit University of Turku Turku Finland
| | - Tomas Roslin
- Faculty of Agriculture and Forestry University of Helsinki Helsinki Finland
- Department of Ecology Swedish University of Agricultural Sciences Uppsala Sweden
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