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Ghobashy MOI, Al-otaibi AS, Alharbi BM, Alshehri D, Ghabban H, Albalawi DA, Alenzi AM, Alatawy M, Alatawi FA, Algammal AM, Mir R, Mahrous YM. Metagenomic Characterization of Microbiome Taxa Associated with Coral Reef Communities in North Area of Tabuk Region, Saudia Arabia. Life (Basel) 2025; 15:423. [PMID: 40141768 PMCID: PMC11944186 DOI: 10.3390/life15030423] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2024] [Revised: 02/23/2025] [Accepted: 02/25/2025] [Indexed: 03/28/2025] Open
Abstract
The coral microbiome is highly related to the overall health and the survival and proliferation of coral reefs. The Red Sea's unique physiochemical characteristics, such a significant north-south temperature and salinity gradient, make it a very intriguing research system. However, the Red Sea is rather isolated, with a very diversified ecosystem rich in coral communities, and the makeup of the coral-associated microbiome remains little understood. Therefore, comprehending the makeup and dispersion of the endogenous microbiome associated with coral is crucial for understanding how the coral microbiome coexists and interacts, as well as its contribution to temperature tolerance and resistance against possible pathogens. Here, we investigate metagenomic sequencing targeting 16S rRNA using DNAs from the sediment samples to identify the coral microbiome and to understand the dynamics of microbial taxa and genes in the surface mucous layer (SML) microbiome of the coral communities in three distinct areas close to and far from coral communities in the Red Sea. These findings highlight the genomic array of the microbiome in three areas around and beneath the coral communities and revealed distinct bacterial communities in each group, where Pseudoalteromonas agarivorans (30%), Vibrio owensii (11%), and Pseudoalteromonas sp. Xi13 (10%) were the most predominant species in samples closer to coral (a coral-associated microbiome), with the domination of Pseudoalteromonas_agarivorans and Vibrio_owensii in Alshreah samples distant from coral, while Pseudoalteromonas_sp._Xi13 was more abundant in closer samples. Moreover, Proteobacteria such as Pseudoalteromonas, Pseudomonas and Cyanobacteria were the most prevalent phyla of the coral microbiome. Further, Saweehal showed the highest diversity far from corals (52.8%) and in Alshreah (7.35%) compared to Marwan (1.75%). The microbial community was less diversified in the samples from Alshreah Far (5.99%) and Marwan Far (1.75%), which had comparatively lower values for all indices. Also, Vibrio species were the most prevalent microorganisms in the coral mucus, and the prevalence of these bacteria is significantly higher than those found in the surrounding saltwater. These findings reveal that there is a notable difference in microbial diversity across the various settings and locales, revealing that geographic variables and coral closeness affect the diversity of microbial communities. There were significant differences in microbial community composition regarding the proximity to coral. In addition, there were strong positive correlations between genera Pseudoalteromonas and Vibrio in close-to-coral environments, suggesting that these bacteria may play a synergistic role in Immunizing coral, raising its tolerance towards environmental stress and overall coral health.
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Affiliation(s)
- Madeha O. I. Ghobashy
- Department of Biology, Faculty of Science, University of Tabuk, Tabuk 71491, Saudi Arabia; (A.S.A.-o.); (B.M.A.); (D.A.); (H.G.); (D.A.A.); (A.M.A.); (M.A.); (F.A.A.)
- Biodiversity Genomics Unit, Faculty of Science, University of Tabuk, Tabuk 71491, Saudi Arabia
| | - Amenah S. Al-otaibi
- Department of Biology, Faculty of Science, University of Tabuk, Tabuk 71491, Saudi Arabia; (A.S.A.-o.); (B.M.A.); (D.A.); (H.G.); (D.A.A.); (A.M.A.); (M.A.); (F.A.A.)
- Biodiversity Genomics Unit, Faculty of Science, University of Tabuk, Tabuk 71491, Saudi Arabia
| | - Basmah M. Alharbi
- Department of Biology, Faculty of Science, University of Tabuk, Tabuk 71491, Saudi Arabia; (A.S.A.-o.); (B.M.A.); (D.A.); (H.G.); (D.A.A.); (A.M.A.); (M.A.); (F.A.A.)
- Biodiversity Genomics Unit, Faculty of Science, University of Tabuk, Tabuk 71491, Saudi Arabia
| | - Dikhnah Alshehri
- Department of Biology, Faculty of Science, University of Tabuk, Tabuk 71491, Saudi Arabia; (A.S.A.-o.); (B.M.A.); (D.A.); (H.G.); (D.A.A.); (A.M.A.); (M.A.); (F.A.A.)
- Biodiversity Genomics Unit, Faculty of Science, University of Tabuk, Tabuk 71491, Saudi Arabia
| | - Hanaa Ghabban
- Department of Biology, Faculty of Science, University of Tabuk, Tabuk 71491, Saudi Arabia; (A.S.A.-o.); (B.M.A.); (D.A.); (H.G.); (D.A.A.); (A.M.A.); (M.A.); (F.A.A.)
- Biodiversity Genomics Unit, Faculty of Science, University of Tabuk, Tabuk 71491, Saudi Arabia
| | - Doha A. Albalawi
- Department of Biology, Faculty of Science, University of Tabuk, Tabuk 71491, Saudi Arabia; (A.S.A.-o.); (B.M.A.); (D.A.); (H.G.); (D.A.A.); (A.M.A.); (M.A.); (F.A.A.)
- Biodiversity Genomics Unit, Faculty of Science, University of Tabuk, Tabuk 71491, Saudi Arabia
| | - Asma Massad Alenzi
- Department of Biology, Faculty of Science, University of Tabuk, Tabuk 71491, Saudi Arabia; (A.S.A.-o.); (B.M.A.); (D.A.); (H.G.); (D.A.A.); (A.M.A.); (M.A.); (F.A.A.)
- Biodiversity Genomics Unit, Faculty of Science, University of Tabuk, Tabuk 71491, Saudi Arabia
| | - Marfat Alatawy
- Department of Biology, Faculty of Science, University of Tabuk, Tabuk 71491, Saudi Arabia; (A.S.A.-o.); (B.M.A.); (D.A.); (H.G.); (D.A.A.); (A.M.A.); (M.A.); (F.A.A.)
- Biodiversity Genomics Unit, Faculty of Science, University of Tabuk, Tabuk 71491, Saudi Arabia
| | - Faud A. Alatawi
- Department of Biology, Faculty of Science, University of Tabuk, Tabuk 71491, Saudi Arabia; (A.S.A.-o.); (B.M.A.); (D.A.); (H.G.); (D.A.A.); (A.M.A.); (M.A.); (F.A.A.)
| | - Abdelazeem M. Algammal
- Department of Bacteriology, Immunology, and Mycology, Faculty of Veterinary Medicine, Suez Canal University, Ismailia 41522, Egypt;
| | - Rashid Mir
- Prince Fahd Bin Sultan Research Chair for Biomedical Research, Department of Medical Lab Technology, Faculty of Applied Medical Sciences, University of Tabuk, Tabuk 71491, Saudi Arabia;
| | - Yussri M. Mahrous
- Department of Science and Basic Studies, Applied College, University of Tabuk, Tabuk 71491, Saudi Arabia;
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Valadez-Ingersoll M, Aguirre Carrión PJ, Bodnar CA, Desai NA, Gilmore TD, Davies SW. Starvation differentially affects gene expression, immunity and pathogen susceptibility across symbiotic states in a model cnidarian. Proc Biol Sci 2024; 291:20231685. [PMID: 38412969 PMCID: PMC10898965 DOI: 10.1098/rspb.2023.1685] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2023] [Accepted: 01/29/2024] [Indexed: 02/29/2024] Open
Abstract
Mutualistic symbioses between cnidarians and photosynthetic algae are modulated by complex interactions between host immunity and environmental conditions. Here, we investigate how symbiosis interacts with food limitation to influence gene expression and stress response programming in the sea anemone Exaiptasia pallida (Aiptasia). Transcriptomic responses to starvation were similar between symbiotic and aposymbiotic Aiptasia; however, aposymbiotic anemone responses were stronger. Starved Aiptasia of both symbiotic states exhibited increased protein levels of immune-related transcription factor NF-κB, its associated gene pathways, and putative target genes. However, this starvation-induced increase in NF-κB correlated with increased immunity only in symbiotic anemones. Furthermore, starvation had opposite effects on Aiptasia susceptibility to pathogen and oxidative stress challenges, suggesting distinct energetic priorities under food scarce conditions. Finally, when we compared starvation responses in Aiptasia to those of a facultative coral and non-symbiotic anemone, 'defence' responses were similarly regulated in Aiptasia and the facultative coral, but not in the non-symbiotic anemone. This pattern suggests that capacity for symbiosis influences immune responses in cnidarians. In summary, expression of certain immune pathways-including NF-κB-does not necessarily predict susceptibility to pathogens, highlighting the complexities of cnidarian immunity and the influence of symbiosis under varying energetic demands.
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Affiliation(s)
| | | | - Caoimhe A. Bodnar
- Department of Biology, Boston University, 5 Cummington Mall, Boston, MA 02215, USA
| | - Niharika A. Desai
- Department of Biology, Boston University, 5 Cummington Mall, Boston, MA 02215, USA
| | - Thomas D. Gilmore
- Department of Biology, Boston University, 5 Cummington Mall, Boston, MA 02215, USA
| | - Sarah W. Davies
- Department of Biology, Boston University, 5 Cummington Mall, Boston, MA 02215, USA
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3
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Murthy MHS, Jasbi P, Lowe W, Kumar L, Olaosebikan M, Roger L, Yang J, Lewinski N, Daniels N, Cowen L, Klein-Seetharaman J. Insulin signaling and pharmacology in humans and in corals. PeerJ 2024; 12:e16804. [PMID: 38313028 PMCID: PMC10838073 DOI: 10.7717/peerj.16804] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Accepted: 12/27/2023] [Indexed: 02/06/2024] Open
Abstract
Once thought to be a unique capability of the Langerhans islets in the pancreas of mammals, insulin (INS) signaling is now recognized as an evolutionarily ancient function going back to prokaryotes. INS is ubiquitously present not only in humans but also in unicellular eukaryotes, fungi, worms, and Drosophila. Remote homologue identification also supports the presence of INS and INS receptor in corals where the availability of glucose is largely dependent on the photosynthetic activity of the symbiotic algae. The cnidarian animal host of corals operates together with a 20,000-sized microbiome, in direct analogy to the human gut microbiome. In humans, aberrant INS signaling is the hallmark of metabolic disease, and is thought to play a major role in aging, and age-related diseases, such as Alzheimer's disease. We here would like to argue that a broader view of INS beyond its human homeostasis function may help us understand other organisms, and in turn, studying those non-model organisms may enable a novel view of the human INS signaling system. To this end, we here review INS signaling from a new angle, by drawing analogies between humans and corals at the molecular level.
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Affiliation(s)
| | - Paniz Jasbi
- School of Molecular Sciences, Arizona State University, Phoenix, AZ, USA
| | - Whitney Lowe
- Departments of Chemistry & Physics, Colorado School of Mines, Golden, CO, United States
| | - Lokender Kumar
- Departments of Chemistry & Physics, Colorado School of Mines, Golden, CO, United States
| | | | - Liza Roger
- School of Molecular Sciences, Arizona State University, Phoenix, AZ, USA
- School of Ocean Futures, Arizona State University, Tempe, AZ, United States of America
| | - Jinkyu Yang
- Department of Aeronautics & Astronautics, University of Washington, Seattle, WA, USA
| | - Nastassja Lewinski
- Department of Chemical and Life Science Engineering, Virginia Commonwealth University, Richmond, VA, USA
| | - Noah Daniels
- Department of Computer Science, University of Rhode Island, Kingston, RI, USA
| | - Lenore Cowen
- Department of Computer Science, Tufts University, Medford, MA, USA
| | - Judith Klein-Seetharaman
- School of Molecular Sciences, Arizona State University, Phoenix, AZ, USA
- Departments of Chemistry & Physics, Colorado School of Mines, Golden, CO, United States
- College of Health Solutions, Arizona State University, Phoenix, AZ, United States
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Chiou YJ, Chan YF, Yu SP, Lu CY, Hsiao SSY, Chiang PW, Hsu TC, Liu PY, Wada N, Lee Y, Jane WN, Lee DC, Huang YW, Tang SL. Similar but different: Characterization of dddD gene-mediated DMSP metabolism among coral-associated Endozoicomonas. SCIENCE ADVANCES 2023; 9:eadk1910. [PMID: 37992165 PMCID: PMC10664990 DOI: 10.1126/sciadv.adk1910] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2023] [Accepted: 10/20/2023] [Indexed: 11/24/2023]
Abstract
Endozoicomonas are often predominant bacteria and prominently important in coral health. Their role in dimethylsulfoniopropionate (DMSP) degradation has been a subject of discussion for over a decade. A previous study found that Endozoicomonas degraded DMSP through the dddD pathway. This process releases dimethyl sulfide, which is vital for corals coping with thermal stress. However, little is known about the related gene regulation and metabolic abilities of DMSP metabolism in Endozoicomonadaceae. In this study, we isolated a novel Endozoicomonas DMSP degrader and observed a distinct DMSP metabolic trend in two phylogenetically close dddD-harboring Endozoicomonas species, confirmed genetically by comparative transcriptomic profiling and visualization of the change of DMSP stable isotopes in bacterial cells using nanoscale secondary ion spectrometry. Furthermore, we found that DMSP cleavage enzymes are ubiquitous in coral Endozoicomonas with a preference for having DddD lyase. We speculate that harboring DMSP degrading genes enables Endozoicomonas to successfully colonize various coral species across the globe.
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Affiliation(s)
- Yu-Jing Chiou
- Institute of Oceanography, National Taiwan University, Taipei 106, Taiwan
- Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan
| | - Ya-Fan Chan
- Department of Microbiology, Soochow University, Taipei 111, Taiwan
| | - Sheng-Ping Yu
- Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan
| | - Chih-Ying Lu
- Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan
- Molecular and Biological Agricultural Sciences Program, Taiwan International Graduate Program, National Chung Hsing University and Academia Sinica, Taipei 115, Taiwan
- Graduate Institute of Biotechnology, National Chung Hsing University, Taichung 402, Taiwan
| | | | - Pei-Wen Chiang
- Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan
| | - Ting-Chang Hsu
- Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan
| | - Po-Yu Liu
- School of Medicine, College of Medicine, National Sun Yat-Sen University, Kaohsiung 804, Taiwan
| | - Naohisa Wada
- Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan
| | - Yu Lee
- Department of Chemistry, National Tsing Hua University, Hsinchu 300, Taiwan
| | - Wann-Neng Jane
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei 115, Taiwan
| | - Der-Chuen Lee
- Institute of Astronomy and Astrophysics, Academia Sinica, Taipei 115, Taiwan
| | - Yu-Wen Huang
- Department of Chemistry, National Tsing Hua University, Hsinchu 300, Taiwan
| | - Sen-Lin Tang
- Institute of Oceanography, National Taiwan University, Taipei 106, Taiwan
- Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan
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Vilas Bhagwat P, Ravindran C, Irudayarajan L. Characterization of the defense properties of healthy and diseased coral mucus. J Invertebr Pathol 2023; 201:108001. [PMID: 37838065 DOI: 10.1016/j.jip.2023.108001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2022] [Revised: 09/24/2023] [Accepted: 10/11/2023] [Indexed: 10/16/2023]
Abstract
The surface mucus layer of corals aids in feeding, silt removal, and defense against pathogens. However, first line of defense of secreted mucus of corals against tissue damage generated through pathogen or environmental factors is poorly understood. Hence, we used various methods such as a well diffusion assay and tests for quorum quenching, free radical scavenging, antioxidant enzyme expression and phenoloxidase (PO) activity to determine the mucus defense properties using mucus of healthy and diseased Porites sp. and Acropora sp. Interestingly the coral mucus showed antimicrobial activity against coral pathogens such as bacteria and protozoan ciliates. Inhibition of the N-Acyl homoserine lactone (AHL) molecule suggests quorum quenching. Free radical scavenging of mucus was screened using hydrogen peroxide, hydroxyl radical, and 2, 2-diphenyl-1-picrylhydrazyl (DPPH) methods, which was found significantly more in diseased corals (p < 0.05). Antioxidant enzymes superoxide dismutase (SOD), catalase, and peroxidase activity were observed in both the diseased and healthy coral mucus. The presence of serine and metalloproteases was also detected in coral mucus. Further, phenoloxidase (PO) activity was highest in diseased coral mucus affected by pink line syndrome and white patch Acropora sp. disease than the healthy coral mucus. Thus, the present study of antimicrobial properties, antioxidant enzymes, and quorum quenching properties in coral mucus may aid in understanding the corals defense and survival against pathogens and any abiotic stress.
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Affiliation(s)
- Phartade Vilas Bhagwat
- Biological Oceanography Division, CSIR-National Institute of Oceanography, Dona Paula-403004, Goa, India; Department of Biotechnology, Goa University, Taleigao Plateau, Goa 403206, India
| | - Chinnarajan Ravindran
- Biological Oceanography Division, CSIR-National Institute of Oceanography, Dona Paula-403004, Goa, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India.
| | - Lawrance Irudayarajan
- Biological Oceanography Division, CSIR-National Institute of Oceanography, Dona Paula-403004, Goa, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India
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Jackson R, Gabric A. Climate Change Impacts on the Marine Cycling of Biogenic Sulfur: A Review. Microorganisms 2022; 10:1581. [PMID: 36013999 PMCID: PMC9412504 DOI: 10.3390/microorganisms10081581] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2022] [Revised: 08/02/2022] [Accepted: 08/02/2022] [Indexed: 11/16/2022] Open
Abstract
A key component of the marine sulfur cycle is the climate-active gas dimethylsulfide (DMS), which is synthesized by a range of organisms from phytoplankton to corals, and accounts for up to 80% of global biogenic sulfur emissions. The DMS cycle starts with the intracellular synthesis of the non-gaseous precursor dimethylsulfoniopropionate (DMSP), which is released to the water column by various food web processes such as zooplankton grazing. This dissolved DMSP pool is rapidly turned over by microbially mediated conversion using two known pathways: demethylation (releasing methanethiol) and cleavage (producing DMS). Some of the formed DMS is ventilated to the atmosphere, where it undergoes rapid oxidation and contributes to the formation of sulfate aerosols, with the potential to affect cloud microphysics, and thus the regional climate. The marine phase cycling of DMS is complex, however, as heterotrophs also contribute to the consumption of the newly formed dissolved DMS. Interestingly, due to microbial consumption and other water column sinks such as photolysis, the amount of DMS that enters the atmosphere is currently thought to be a relatively minor fraction of the total amount cycled through the marine food web-less than 10%. These microbial processes are mediated by water column temperature, but the response of marine microbial assemblages to ocean warming is poorly characterized, although bacterial degradation appears to increase with an increase in temperature. This review will focus on the potential impact of climate change on the key microbially mediated processes in the marine cycling of DMS. It is likely that the impact will vary across different biogeographical regions from polar to tropical. For example, in the rapidly warming polar oceans, microbial communities associated with the DMS cycle will likely change dramatically during the 21st century with the decline in sea ice. At lower latitudes, where corals form an important source of DMS (P), shifts in the microbiome composition have been observed during thermal stress with the potential to alter the DMS cycle.
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Affiliation(s)
- Rebecca Jackson
- Coasts and Ocean Research, Oceans and Atmosphere, CSIRO, Canberra, ACT 2601, Australia
| | - Albert Gabric
- School of Environment and Science, Griffith University, Nathan, QLD 4111, Australia
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Meziere Z, Rich WA, Carvalho S, Benzoni F, Morán XAG, Berumen ML. Stylophora under stress: A review of research trends and impacts of stressors on a model coral species. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 816:151639. [PMID: 34780827 DOI: 10.1016/j.scitotenv.2021.151639] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2021] [Revised: 10/05/2021] [Accepted: 11/08/2021] [Indexed: 06/13/2023]
Abstract
Sometimes called the "lab rat" of coral research, Stylophora pistillata (Esper, 1797) has been extensively used in coral biology in studies ranging from reef ecology to coral metabolic processes, and has been used as a model for investigations into molecular and cellular biology. Previously thought to be a common species spanning a wide distribution through the Indo-Pacific region, "S. pistillata" is in fact four genetically distinct lineages (clades) with different evolutionary histories and geographical distributions. Here, we review the studies of stress responses of S. pistillatasensulato (clades 1-4) and highlight research trends and knowledge gaps. We identify 126 studies on stress responses including effects of temperature, acidification, eutrophication, pollutants and other local impacts. We find that most studies have focused on the effect of single stressors, especially increased temperature, and have neglected the combined effects of multiple stressors. Roughly 61% of studies on S. pistillata come from the northern Red Sea (clade 4), at the extreme limit of its current distribution; clades 2 and 3 are virtually unstudied. The overwhelming majority of studies were conducted in laboratory or mesocosm conditions, with field experiments constituting only 2% of studies. We also note that a variety of experimental designs and treatment conditions makes it difficult to draw general conclusions about the effects of particular stressors on S. pistillata. Given those knowledge gaps and limitations in the published research, we suggest a more standardized approach to compare responses across geographically disparate populations and more accurately anticipate responses to predicted future climate conditions.
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Affiliation(s)
- Zoe Meziere
- Red Sea Research Center, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Jeddah, 23955-6900, Saudi Arabia; School of Biological Sciences, University of Queensland, St Lucia, Queensland 4072, Australia.
| | - Walter A Rich
- Red Sea Research Center, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Jeddah, 23955-6900, Saudi Arabia
| | - Susana Carvalho
- Red Sea Research Center, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Jeddah, 23955-6900, Saudi Arabia
| | - Francesca Benzoni
- Red Sea Research Center, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Jeddah, 23955-6900, Saudi Arabia
| | - Xosé Anxelu G Morán
- Red Sea Research Center, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Jeddah, 23955-6900, Saudi Arabia; Instituto Español de Oceanografía (IEO), Centro Oceanográfico de Gijón/Xixón, Gijón/Xixón, Spain
| | - Michael L Berumen
- Red Sea Research Center, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Jeddah, 23955-6900, Saudi Arabia
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8
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The effect of thermal stress on the physiology and bacterial communities of two key Mediterranean gorgonians. Appl Environ Microbiol 2022; 88:e0234021. [PMID: 35108095 PMCID: PMC8939326 DOI: 10.1128/aem.02340-21] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Gorgonians are important habitat-providing species in the Mediterranean Sea, but their populations are declining due to microbial diseases and repeated mass mortality events caused by summer heat waves. Elevated seawater temperatures may impact the stress tolerance and disease resistance of gorgonians and lead to disturbances in their microbiota. However, our knowledge of the biological response of the gorgonian holobiont (i.e., the host and its microbiota) to thermal stress remains limited. Here, we investigated how the holobiont of two gorgonian species (Paramuricea clavata and Eunicella cavolini) are affected throughout a 7-week thermal stress event by following both the corals’ physiology and the composition of their bacterial communities. We found that P. clavata was more sensitive to elevated seawater temperatures than E. cavolini, showing a greater loss in energy reserves, reduced feeding ability, and partial mortality. This lower thermotolerance may be linked to the ∼20× lower antioxidant defense capacity in P. clavata compared with E. cavolini. In the first 4 weeks of thermal stress, we also observed minor shifts in the microbiota of both species, suggesting that the microbiota likely plays a limited role in thermal acclimation of the holobiont. However, major stochastic changes occurred later on in some colonies, which were of a transient nature in E. cavolini, but were linked to partial colony mortality in P. clavata. Overall, our results show significant, but differential, effects of thermal stress on the holobionts of both E. cavolini and P. clavata and predict potentially severe impacts on gorgonian populations under future climate scenarios. IMPORTANCE In the Mediterranean Sea, the tree-shaped gorgonian corals form large forests that provide a place to live for many species. Because of this important ecological role, it is crucial to understand how common habitat-forming gorgonians, like Eunicella cavolini and Paramuricea clavata, are affected by high seawater temperatures that are expected in the future due to climate change. We found that both species lost biomass, but P. clavata was more affected, being also unable to feed and showing signs of mortality. The microbiota of both gorgonians also changed substantively under high temperatures. Although this could be linked to partial colony mortality in P. clavata, the changes were temporary in E. cavolini. The overall higher resistance of E. cavolini may be related to its much higher antioxidant defense levels than P. clavata. Climate change may thus have severe impacts on gorgonian populations and the habitats they provide.
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Barreto MM, Ziegler M, Venn A, Tambutté E, Zoccola D, Tambutté S, Allemand D, Antony CP, Voolstra CR, Aranda M. Effects of Ocean Acidification on Resident and Active Microbial Communities of Stylophora pistillata. Front Microbiol 2021; 12:707674. [PMID: 34899619 PMCID: PMC8656159 DOI: 10.3389/fmicb.2021.707674] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2021] [Accepted: 10/28/2021] [Indexed: 12/12/2022] Open
Abstract
Ocean warming and ocean acidification (OA) are direct consequences of climate change and affect coral reefs worldwide. While the effect of ocean warming manifests itself in increased frequency and severity of coral bleaching, the effects of ocean acidification on corals are less clear. In particular, long-term effects of OA on the bacterial communities associated with corals are largely unknown. In this study, we investigated the effects of ocean acidification on the resident and active microbiome of long-term aquaria-maintained Stylophora pistillata colonies by assessing 16S rRNA gene diversity on the DNA (resident community) and RNA level (active community). Coral colony fragments of S. pistillata were kept in aquaria for 2 years at four different pCO2 levels ranging from current pH conditions to increased acidification scenarios (i.e., pH 7.2, 7.4, 7.8, and 8). We identified 154 bacterial families encompassing 2,047 taxa (OTUs) in the resident and 89 bacterial families including 1,659 OTUs in the active communities. Resident communities were dominated by members of Alteromonadaceae, Flavobacteriaceae, and Colwelliaceae, while active communities were dominated by families Cyclobacteriacea and Amoebophilaceae. Besides the overall differences between resident and active community composition, significant differences were seen between the control (pH 8) and the two lower pH treatments (7.2 and 7.4) in the active community, but only between pH 8 and 7.2 in the resident community. Our analyses revealed profound differences between the resident and active microbial communities, and we found that OA exerted stronger effects on the active community. Further, our results suggest that rDNA- and rRNA-based sequencing should be considered complementary tools to investigate the effects of environmental change on microbial assemblage structure and activity.
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Affiliation(s)
- Marcelle Muniz Barreto
- Red Sea Research Center, Division of Biological and Environmental Science and Engineering (BESE), King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
| | - Maren Ziegler
- Department of Animal Ecology and Systematics, Justus Liebig University Giessen, Giessen, Germany
| | | | | | | | | | | | - Chakkiath Paul Antony
- Red Sea Research Center, Division of Biological and Environmental Science and Engineering (BESE), King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
| | - Christian R Voolstra
- Red Sea Research Center, Division of Biological and Environmental Science and Engineering (BESE), King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.,Department of Biology, University of Konstanz, Konstanz, Germany
| | - Manuel Aranda
- Red Sea Research Center, Division of Biological and Environmental Science and Engineering (BESE), King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
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10
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Rivera HE, Davies SW. Symbiosis maintenance in the facultative coral, Oculina arbuscula, relies on nitrogen cycling, cell cycle modulation, and immunity. Sci Rep 2021; 11:21226. [PMID: 34707162 PMCID: PMC8551165 DOI: 10.1038/s41598-021-00697-6] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2021] [Accepted: 10/11/2021] [Indexed: 12/24/2022] Open
Abstract
Symbiosis with unicellular algae in the family Symbiodiniaceae is common across tropical marine invertebrates. Reef-building corals offer a clear example of cellular dysfunction leading to a dysbiosis that disrupts entire ecosystems in a process termed coral bleaching. Due to their obligate symbiotic relationship, understanding the molecular underpinnings that sustain this symbiosis in tropical reef-building corals is challenging, as any aposymbiotic state is inherently coupled with severe physiological stress. Here, we leverage the subtropical, facultatively symbiotic and calcifying coral Oculina arbuscula to investigate gene expression differences between aposymbiotic and symbiotic branches within the same colonies under baseline conditions. We further compare gene ontology (GO) and KOG enrichment in gene expression patterns from O. arbuscula with prior work in the sea anemone Exaiptasia pallida (Aiptasia) and the salamander Ambystoma maculatum-both of which exhibit endophotosymbiosis with unicellular algae. We identify nitrogen cycling, cell cycle control, and immune responses as key pathways involved in the maintenance of symbiosis under baseline conditions. Understanding the mechanisms that sustain a healthy symbiosis between corals and Symbiodiniaceae algae is of urgent importance given the vulnerability of these partnerships to changing environmental conditions and their role in the continued functioning of critical and highly diverse marine ecosystems.
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Affiliation(s)
- H E Rivera
- Department of Biology, Boston University, Boston, MA, USA.
| | - S W Davies
- Department of Biology, Boston University, Boston, MA, USA.
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11
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Mote S, Gupta V, De K, Nanajkar M, Damare SR, Ingole B. Bacterial diversity associated with a newly described bioeroding sponge, Cliona thomasi, from the coral reefs on the West Coast of India. Folia Microbiol (Praha) 2020; 66:203-211. [PMID: 33140282 DOI: 10.1007/s12223-020-00830-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2020] [Accepted: 10/16/2020] [Indexed: 10/23/2022]
Abstract
The bacterial diversity associated with eroding sponges belonging to the Cliona viridis species complex is scarcely known. Cliona thomasi described from the West Coast of India is a new introduction to the viridis species complex. In this study, we determined the bacterial diversity associated with C. thomasi using next-generation sequencing. The results revealed the dominance of Proteobacteria followed by Cyanobacteria, Actinobacteria and Firmicutes. Among Proteobacteria, the Alphaproteobacteria were found to be the most dominant class. Furthermore, at the genus level, Rhodothalassium were highly abundant followed by Endozoicomonas in sponge samples. The beta-diversity and species richness measures showed remarkably lower diversity in Cliona thomasi than the ambient environment. The determined lower bacterial diversity in C. thomasi than the environmental samples, thus, categorized it as a low microbial abundance (LMA). Functional annotation of the C. thomasi-associated bacterial community indicates their possible role in photo-autotrophy, aerobic nitrification, coupling of sulphate reduction and sulphide oxidization. The present study unveils the bacterial diversity in bioeroding C. thomasi, which is a crucial step to determine the functions of the sponge holobiont in coral reef ecosystem.
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Affiliation(s)
- Sambhaji Mote
- CSIR-National Institute of Oceanography, Dona Paula, Goa, India.,Department of Marine Sciences, Bharathidasan University, Tiruchirappalli, Tamil Nadu, India
| | - Vishal Gupta
- CSIR-National Institute of Oceanography, Dona Paula, Goa, India. .,School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK.
| | - Kalyan De
- CSIR-National Institute of Oceanography, Dona Paula, Goa, India.,School of Earth, Ocean, and Atmospheric Sciences, Goa University, Taleigao, Goa, India
| | - Mandar Nanajkar
- CSIR-National Institute of Oceanography, Dona Paula, Goa, India
| | - Samir R Damare
- CSIR-National Institute of Oceanography, Dona Paula, Goa, India
| | - Baban Ingole
- CSIR-National Institute of Oceanography, Dona Paula, Goa, India.
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12
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Jackson RL, Gabric AJ, Cropp R. Coral reefs as a source of climate-active aerosols. PeerJ 2020; 8:e10023. [PMID: 33062438 PMCID: PMC7531332 DOI: 10.7717/peerj.10023] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2020] [Accepted: 09/02/2020] [Indexed: 01/17/2023] Open
Abstract
We review the evidence for bio-regulation by coral reefs of local climate through stress-induced emissions of aerosol precursors, such as dimethylsulfide. This is an issue that goes to the core of the coral ecosystem’s ability to maintain homeostasis in the face of increasing climate change impacts and other anthropogenic pressures. We examine this through an analysis of data on aerosol emissions by corals of the Great Barrier Reef, Australia. We focus on the relationship with local stressors, such as surface irradiance levels and sea surface temperature, both before and after notable coral bleaching events. We conclude that coral reefs may be able to regulate their exposure to environmental stressors through modification of the optical properties of the atmosphere, however this ability may be impaired as climate change intensifies.
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Affiliation(s)
- Rebecca L Jackson
- School of Environment and Science, Griffith University, Gold Coast, QLD, Australia
| | - Albert J Gabric
- School of Environment and Science, Griffith University, Nathan, QLD, Australia
| | - Roger Cropp
- School of Environment and Science, Griffith University, Gold Coast, QLD, Australia
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13
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Guibert I, Bourdreux F, Bonnard I, Pochon X, Dubousquet V, Raharivelomanana P, Berteaux-Lecellier V, Lecellier G. Dimethylsulfoniopropionate concentration in coral reef invertebrates varies according to species assemblages. Sci Rep 2020; 10:9922. [PMID: 32555283 PMCID: PMC7303174 DOI: 10.1038/s41598-020-66290-5] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2019] [Accepted: 05/18/2020] [Indexed: 11/28/2022] Open
Abstract
Dimethylsulfoniopropionate (DMSP) is a key compound in the marine sulfur cycle, and is produced in large quantities in coral reefs. In addition to Symbiodiniaceae, corals and associated bacteria have recently been shown to play a role in DMSP metabolism. Numerous ecological studies have focused on DMSP concentrations in corals, which led to the hypothesis that increases in DMSP levels might be a general response to stress. Here we used multiple species assemblages of three common Indo-Pacific holobionts, the scleractinian corals Pocillopora damicornis and Acropora cytherea, and the giant clam Tridacna maxima and examined the DMSP concentrations associated with each species within different assemblages and thermal conditions. Results showed that the concentration of DMSP in A. cytherea and T. maxima is modulated according to the complexity of species assemblages. To determine the potential importance of symbiotic dinoflagellates in DMSP production, we then explored the relative abundance of Symbiodiniaceae clades in relation to DMSP levels using metabarcoding, and found no significant correlation between these factors. Finally, this study also revealed the existence of homologs involved in DMSP production in giant clams, suggesting for the first time that, like corals, they may also contribute to DMSP production. Taken together, our results demonstrated that corals and giant clams play important roles in the sulfur cycle. Because DMSP production varies in response to specific species-environment interactions, this study offers new perspectives for future global sulfur cycling research.
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Affiliation(s)
- Isis Guibert
- Swire Institute of Marine Science, The University of Hong Kong, Hong Kong S.A.R, China.
- Sorbonne Université, UMR250/9220 ENTROPIE IRD-CNRS-UR-IFREMER-UNC, Promenade Roger-Laroque, Noumea cedex, New Caledonia, France.
- USR3278 PSL CRIOBE CNRS-EPHE-UPVD, LabEx CORAIL, Papetoai, Moorea, French Polynesia.
| | - Flavien Bourdreux
- Université de Paris-Saclay, UVSQ, 45 avenue des Etats-Unis, Versailles Cedex, France
- Institut Lavoisier de Versailles, UMR CNRS 8180, 45 avenue des Etats-Unis, Versailles Cedex, France
| | - Isabelle Bonnard
- USR3278 PSL CRIOBE CNRS-EPHE-UPVD, LabEx CORAIL, Université de Perpignan, 58 avenue Paul Alduy, 66860, Perpignan, France
| | - Xavier Pochon
- Coastal and Freshwater Group, Cawthron Institute, Private Bag 2, Nelson, 7042, New Zealand
- Institute of Marine Science, University of Auckland, Private Bag 349, Warkworth, 0941, New Zealand
| | - Vaimiti Dubousquet
- Délégation à la recherche, Government of French Polynesia BP 20981, 98713, Papeete, Tahiti, French Polynesia
| | - Phila Raharivelomanana
- UMR 241 EIO, Université de la Polynésie Française, BP 6570 Faaa, 98702, Faaa, Tahiti, French Polynesia
| | - Véronique Berteaux-Lecellier
- USR3278 PSL CRIOBE CNRS-EPHE-UPVD, LabEx CORAIL, Papetoai, Moorea, French Polynesia
- UMR250/9220 ENTROPIE IRD-CNRS-UR-IFREMER-UNC, Promenade Roger-Laroque, Noumea cedex, New Caledonia, France
| | - Gael Lecellier
- Université de Paris-Saclay, UVSQ, 45 avenue des Etats-Unis, Versailles Cedex, France
- UMR250/9220 ENTROPIE IRD-CNRS-UR-IFREMER-UNC, Promenade Roger-Laroque, Noumea cedex, New Caledonia, France
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14
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Osman EO, Suggett DJ, Voolstra CR, Pettay DT, Clark DR, Pogoreutz C, Sampayo EM, Warner ME, Smith DJ. Coral microbiome composition along the northern Red Sea suggests high plasticity of bacterial and specificity of endosymbiotic dinoflagellate communities. MICROBIOME 2020; 8:8. [PMID: 32008576 PMCID: PMC6996193 DOI: 10.1186/s40168-019-0776-5] [Citation(s) in RCA: 49] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2019] [Accepted: 12/12/2019] [Indexed: 05/21/2023]
Abstract
BACKGROUND The capacity of reef-building corals to tolerate (or adapt to) heat stress is a key factor determining their resilience to future climate change. Changes in coral microbiome composition (particularly for microalgal endosymbionts and bacteria) is a potential mechanism that may assist corals to thrive in warm waters. The northern Red Sea experiences extreme temperatures anomalies, yet corals in this area rarely bleach suggesting possible refugia to climate change. However, the coral microbiome composition, and how it relates to the capacity to thrive in warm waters in this region, is entirely unknown. RESULTS We investigated microbiomes for six coral species (Porites nodifera, Favia favus, Pocillopora damicornis, Seriatopora hystrix, Xenia umbellata, and Sarcophyton trocheliophorum) from five sites in the northern Red Sea spanning 4° of latitude and summer mean temperature ranges from 26.6 °C to 29.3 °C. A total of 19 distinct dinoflagellate endosymbionts were identified as belonging to three genera in the family Symbiodiniaceae (Symbiodinium, Cladocopium, and Durusdinium). Of these, 86% belonged to the genus Cladocopium, with notably five novel types (19%). The endosymbiont community showed a high degree of host-specificity despite the latitudinal gradient. In contrast, the diversity and composition of bacterial communities of the surface mucus layer (SML)-a compartment particularly sensitive to environmental change-varied significantly between sites, however for any given coral was species-specific. CONCLUSION The conserved endosymbiotic community suggests high physiological plasticity to support holobiont productivity across the different latitudinal regimes. Further, the presence of five novel algal endosymbionts suggests selection of certain genotypes (or genetic adaptation) within the semi-isolated Red Sea. In contrast, the dynamic composition of bacteria associated with the SML across sites may contribute to holobiont function and broaden the ecological niche. In doing so, SML bacterial communities may aid holobiont local acclimatization (or adaptation) by readily responding to changes in the host environment. Our study provides novel insight about the selective and endemic nature of coral microbiomes along the northern Red Sea refugia.
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Affiliation(s)
- Eslam O Osman
- Coral Reef Research Unit, School of Life Sciences, University of Essex, Colchester, CO4 3SQ, UK.
- Marine Biology Department, Faculty of Science, Al-Azhar University, Nasr City, Cairo, 11448, Egypt.
| | - David J Suggett
- Coral Reef Research Unit, School of Life Sciences, University of Essex, Colchester, CO4 3SQ, UK
- Climate Change Cluster, University of Technology Sydney, Sydney, New South Wales, 2007, Australia
| | - Christian R Voolstra
- Red Sea Research Center, Division of Biological and Environmental Science and Engineering (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
- Department of Biology, University of Konstanz, 78457, Konstanz, Germany
| | - D Tye Pettay
- School of Marine Science and Policy, College of Earth, Ocean, and Environment, University of Delaware, Lewes, DE, 19958, USA
| | - Dave R Clark
- Coral Reef Research Unit, School of Life Sciences, University of Essex, Colchester, CO4 3SQ, UK
| | - Claudia Pogoreutz
- Red Sea Research Center, Division of Biological and Environmental Science and Engineering (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
- Department of Biology, University of Konstanz, 78457, Konstanz, Germany
| | - Eugenia M Sampayo
- ARC Centre of Excellence for Coral Reef Studies, School of Biological Sciences, The University of Queensland, St. Lucia, 4072, QLD, Australia
| | - Mark E Warner
- School of Marine Science and Policy, College of Earth, Ocean, and Environment, University of Delaware, Lewes, DE, 19958, USA
| | - David J Smith
- Coral Reef Research Unit, School of Life Sciences, University of Essex, Colchester, CO4 3SQ, UK
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15
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Kültz D. Evolution of cellular stress response mechanisms. JOURNAL OF EXPERIMENTAL ZOOLOGY PART 2020; 333:359-378. [PMID: 31970941 DOI: 10.1002/jez.2347] [Citation(s) in RCA: 60] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2019] [Revised: 12/19/2019] [Accepted: 01/08/2020] [Indexed: 12/16/2022]
Abstract
The cellular stress response (CSR) is pervasive to all domains of life. It has shaped the interaction between organisms and their environment since the origin of the first cell. Although the CSR has been subject to a myriad of nuanced modifications in the various branches of life present today, its core features remain preserved. The scientific literature covering the CSR is enormous and the broad scope of this brief overview was challenging. However, it is critical to conceptually understand how cells respond to stress in a holistic sense and to point out how fundamental aspects of the CSR framework are integrated. It was necessary to be extremely selective and not feasible to even mention many interesting and important developments in this expansive field. The purpose of this overview is to sketch out general and emerging CSR concepts with an emphasis on the initial cellular strain resulting from stress (macromolecular damage) and the evolutionarily most highly conserved elements of the CSR. Examples emphasize fish and aquatic invertebrates to highlight what is known in organisms beyond mammals, yeast, and other common models. Nonetheless, select pioneering studies using canonical models are also considered and the concepts discussed are applicable to all cells. More detail on important aspects of the CSR in aquatic animals is provided in the accompanying articles of this special issue.
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Affiliation(s)
- Dietmar Kültz
- Department of Animal Sciences, University of California Davis, Davis, California
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16
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Suggett DJ, Smith DJ. Coral bleaching patterns are the outcome of complex biological and environmental networking. GLOBAL CHANGE BIOLOGY 2020; 26:68-79. [PMID: 31618499 DOI: 10.1111/gcb.14871] [Citation(s) in RCA: 74] [Impact Index Per Article: 14.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2019] [Accepted: 09/20/2019] [Indexed: 05/26/2023]
Abstract
Continued declines in coral reef health over the past three decades have been punctuated by severe mass coral bleaching-induced mortality events that have grown in intensity and frequency under climate change. Intensive global research efforts have therefore persistently focused on bleaching phenomena to understand where corals bleach, when and why-resulting in a large-yet still somewhat patchy-knowledge base. Particularly catastrophic bleaching-induced coral mortality events in the past 5 years have catalyzed calls for a more diverse set of reef management tools, extending far beyond climate mitigation and reef protection, to also include more aggressive interventions. However, the effectiveness of these various tools now rests on rapidly assimilating our knowledge base of coral bleaching into more integrated frameworks. Here, we consider how the past three decades of intensive coral bleaching research has established the basis for complex biological and environmental networks, which together regulate outcomes of bleaching severity. We discuss how we now have enough scaffold for conceptual biological and environmental frameworks underpinning bleaching susceptibility, but that new tools are urgently required to translate this to an operational system informing-and testing-bleaching outcomes. Specifically, adopting network models that can fully describe and predict metabolic functioning of coral holobionts, and how this functioning is regulated by complex doses and interactions among environmental factors. Identifying knowledge gaps limiting operation of such models is the logical step to immediately guide and prioritize future experiments and observations. We are at a time-critical point where we can implement new capacity to resolve how coral bleaching patterns emerge from complex biological-environmental networks, and so more effectively inform rapidly evolving ecological management and social adaptation frameworks aimed at securing the future of coral reefs.
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Affiliation(s)
- David J Suggett
- Climate Change Cluster, University of Technology Sydney, Ultimo, NSW, Australia
| | - David J Smith
- Coral Reef Research Unit, School of Biological Sciences, University of Essex, Colchester, UK
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17
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Bellantuono AJ, Dougan KE, Granados‐Cifuentes C, Rodriguez‐Lanetty M. Free‐living and symbiotic lifestyles of a thermotolerant coral endosymbiont display profoundly distinct transcriptomes under both stable and heat stress conditions. Mol Ecol 2019; 28:5265-5281. [DOI: 10.1111/mec.15300] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2019] [Revised: 10/22/2019] [Accepted: 10/25/2019] [Indexed: 02/06/2023]
Affiliation(s)
| | - Katherine E. Dougan
- Department of Biological Sciences Florida International University Miami FL USA
| | - Camila Granados‐Cifuentes
- Department of Biological Sciences Florida International University Miami FL USA
- Baruch College The City University of New York New York NY USA
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18
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Abstract
Genomic sequence data for non-model organisms are increasingly available requiring the development of efficient and reproducible workflows. Here, we develop the first genomic resources and reproducible workflows for two threatened members of the reef-building coral genus Acropora We generated genomic sequence data from multiple samples of the Caribbean A. cervicornis (staghorn coral) and A. palmata (elkhorn coral), and predicted millions of nucleotide variants among these two species and the Pacific A. digitifera A subset of predicted nucleotide variants were verified using restriction length polymorphism assays and proved useful in distinguishing the two Caribbean acroporids and the hybrid they form ("A. prolifera"). Nucleotide variants are freely available from the Galaxy server (usegalaxy.org), and can be analyzed there with computational tools and stored workflows that require only an internet browser. We describe these data and some of the analysis tools, concentrating on fixed differences between A. cervicornis and A. palmata In particular, we found that fixed amino acid differences between these two species were enriched in proteins associated with development, cellular stress response, and the host's interactions with associated microbes, for instance in the ABC transporters and superoxide dismutase. Identified candidate genes may underlie functional differences in how these threatened species respond to changing environments. Users can expand the presented analyses easily by adding genomic data from additional species, as they become available.
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19
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Jackson R, Gabric A, Cropp R. Effects of ocean warming and coral bleaching on aerosol emissions in the Great Barrier Reef, Australia. Sci Rep 2018; 8:14048. [PMID: 30232386 PMCID: PMC6145874 DOI: 10.1038/s41598-018-32470-7] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2018] [Accepted: 09/07/2018] [Indexed: 01/23/2023] Open
Abstract
It is proposed that emissions of volatile sulfur compounds by coral reefs contribute to the formation of a biologically-derived feedback on sea surface temperature (SST) through the formation of marine biogenic aerosol (MBA). The direction and strength of this feedback remains uncertain and constitutes a fundamental constraint on predicting the ability of corals to cope with future ocean warming. We investigate the effects of elevated SST and irradiance on satellite-derived fine-mode aerosol optical depth (AOD) throughout the Great Barrier Reef, Australia (GBR) over an 18-year time period. AOD is positively correlated with SST and irradiance and increases two-fold during spring and summer with high frequency variability. As the influence of non-biogenic and distant aerosol sources are found to be negligible, the results support recent findings that the 2,300 km stretch of coral reefs can be a substantial source of biogenic aerosol and thus, influence local ocean albedo. Importantly however, a tipping point in the coral stress response is identified, whereby thermal stress reaches a point that exceeds the capacity of corals to influence local atmospheric properties. Beyond this point, corals may become more susceptible to permanent damage with increasing stress, with potential implications for mass coral bleaching events.
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Affiliation(s)
- Rebecca Jackson
- School of Environment and Science, Griffith University, Gold Coast, 4222, Australia.
- Australian Rivers Institute, Griffith University, Gold Coast, 4222, Australia.
| | - Albert Gabric
- Australian Rivers Institute, Griffith University, Gold Coast, 4222, Australia
- School of Environment and Science, Griffith University, Nathan, 4111, Australia
| | - Roger Cropp
- School of Environment and Science, Griffith University, Gold Coast, 4222, Australia
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20
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21
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Gegner HM, Ziegler M, Rädecker N, Buitrago-López C, Aranda M, Voolstra CR. High salinity conveys thermotolerance in the coral model Aiptasia. Biol Open 2017; 6:1943-1948. [PMID: 29175860 PMCID: PMC5769654 DOI: 10.1242/bio.028878] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Abstract
The endosymbiosis between dinoflagellate algae of the genus Symbiodinium and stony corals provides the foundation of coral reef ecosystems. Coral bleaching, the expulsion of endosymbionts from the coral host tissue as a consequence of heat or light stress, poses a threat to reef ecosystem functioning on a global scale. Hence, a better understanding of the factors contributing to heat stress susceptibility and tolerance is needed. In this regard, some of the most thermotolerant corals live in particularly saline habitats, but possible effects of high salinity on thermotolerance in corals are anecdotal. Here we test the hypothesis that high salinity may lead to increased thermotolerance. We conducted a heat stress experiment at low, intermediate, and high salinities using a set of host-endosymbiont combinations of the coral model Aiptasia. As expected, all host-endosymbiont combinations showed reduced photosynthetic efficiency and endosymbiont loss during heat stress, but the severity of bleaching was significantly reduced with increasing salinities for one of the host-endosymbiont combinations. Our results show that higher salinities can convey increased thermotolerance in Aiptasia, although this effect seems to be dependent on the particular host strain and/or associated symbiont type. This finding may help explain the extraordinarily high thermotolerance of corals in high salinity environments, such as the Red Sea and the Persian/Arabian Gulf, and provides novel insight regarding factors that contribute to thermotolerance. Since our results are based on a salinity effect in symbiotic sea anemones, it remains to be determined whether this salinity effect can also be observed in stony corals. Summary: High salinity can be a factor contributing to increased cnidarian thermal tolerance, as indicated by reduced algal endosymbiont loss and reduced photosynthetic impairment in the sea anemone Aiptasia.
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Affiliation(s)
- Hagen M Gegner
- Red Sea Research Center, Division of Biological and Environmental Science and Engineering (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia
| | - Maren Ziegler
- Red Sea Research Center, Division of Biological and Environmental Science and Engineering (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia
| | - Nils Rädecker
- Red Sea Research Center, Division of Biological and Environmental Science and Engineering (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia
| | - Carol Buitrago-López
- Red Sea Research Center, Division of Biological and Environmental Science and Engineering (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia
| | - Manuel Aranda
- Red Sea Research Center, Division of Biological and Environmental Science and Engineering (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia
| | - Christian R Voolstra
- Red Sea Research Center, Division of Biological and Environmental Science and Engineering (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia
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22
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Aguilar C, Raina JB, Motti CA, Fôret S, Hayward DC, Lapeyre B, Bourne DG, Miller DJ. Transcriptomic analysis of the response of Acropora millepora to hypo-osmotic stress provides insights into DMSP biosynthesis by corals. BMC Genomics 2017; 18:612. [PMID: 28806970 PMCID: PMC5557254 DOI: 10.1186/s12864-017-3959-0] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2017] [Accepted: 07/25/2017] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Dimethylsulfoniopropionate (DMSP) is a small sulphur compound which is produced in prodigious amounts in the oceans and plays a pivotal role in the marine sulfur cycle. Until recently, DMSP was believed to be synthesized exclusively by photosynthetic organisms; however we now know that corals and specific bacteria can also produce this compound. Corals are major sources of DMSP, but the molecular basis for its biosynthesis is unknown in these organisms. RESULTS Here we used salinity stress, which is known to trigger DMSP production in other organisms, in conjunction with transcriptomics to identify coral genes likely to be involved in DMSP biosynthesis. We focused specifically on both adults and juveniles of the coral Acropora millepora: after 24 h of exposure to hyposaline conditions, DMSP concentrations increased significantly by 2.6 fold in adult corals and 1.2 fold in juveniles. Concomitantly, candidate genes enabling each of the necessary steps leading to DMSP production were up-regulated. CONCLUSIONS The data presented strongly suggest that corals use an algal-like pathway to generate DMSP from methionine, and are able to rapidly change expression of the corresponding genes in response to environmental stress. However, our data also indicate that DMSP is unlikely to function primarily as an osmolyte in corals, instead potentially serving as a scavenger of ROS and as a molecular sink for excess methionine produced as a consequence of proteolysis and osmolyte catabolism in corals under hypo-osmotic conditions.
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Affiliation(s)
- Catalina Aguilar
- AIMS@JCU, and Department of Molecular and Cell Biology, James Cook University, Townsville, 4811, Queensland, Australia.,ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, 4811, Queensland, Australia
| | - Jean-Baptiste Raina
- Climate Change Cluster (C3), Faculty of Science, University of Technology, Sydney, NSW, 2007, Australia
| | - Cherie A Motti
- Australian Institute of Marine Science, Townsville, 4810, Queensland, Australia
| | - Sylvain Fôret
- ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, 4811, Queensland, Australia.,Evolution and Ecology, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
| | - David C Hayward
- Evolution and Ecology, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
| | - Bruno Lapeyre
- Laboratoire d'excellence CORAIL, Centre de Recherches Insulaires et Observatoire de l'Environnement (CRIOBE), Moorea, B.P. 1013, Papeete, French Polynesia
| | - David G Bourne
- AIMS@JCU, and Department of Molecular and Cell Biology, James Cook University, Townsville, 4811, Queensland, Australia. .,Australian Institute of Marine Science, Townsville, 4810, Queensland, Australia. .,College of Science and Engineering, James Cook University, Townsville, 4811, Queensland, Australia.
| | - David J Miller
- AIMS@JCU, and Department of Molecular and Cell Biology, James Cook University, Townsville, 4811, Queensland, Australia. .,ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, 4811, Queensland, Australia.
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23
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Gardner SG, Raina JB, Ralph PJ, Petrou K. Reactive oxygen species (ROS) and dimethylated sulphur compounds in coral explants under acute thermal stress. J Exp Biol 2017; 220:1787-1791. [DOI: 10.1242/jeb.153049] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2016] [Accepted: 03/02/2017] [Indexed: 11/20/2022]
Abstract
Coral bleaching is intensifying with global climate change. While the causes for these catastrophic events are well understood, the cellular mechanism that triggers bleaching is not well established. Our understanding of coral bleaching processes is hindered by the lack of robust methods for studying interactions between host and symbiont at the single-cell level. Here we exposed coral explants to acute thermal stress and measured oxidative stress, more specifically, reactive oxygen species (ROS), in individual symbiont cells. Furthermore, we measured concentrations of dimethylsulphoniopropionate (DMSP) and dimethylsulphoxide (DMSO) to elucidate the role of these compounds in coral antioxidant function. This work demonstrates the application of coral explants for investigating coral physiology and biochemistry under thermal stress and delivers a new approach to study host-symbiont interactions at the microscale, allowing us to directly link intracellular ROS with DMSP and DMSO dynamics.
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Affiliation(s)
- Stephanie G. Gardner
- Climate Change Cluster, University of Technology Sydney, Ultimo, 2007 NSW, Australia
- School of Life Sciences, University of Technology Sydney, Ultimo, 2007 NSW, Australia
| | - Jean-Baptiste Raina
- Climate Change Cluster, University of Technology Sydney, Ultimo, 2007 NSW, Australia
| | - Peter J. Ralph
- Climate Change Cluster, University of Technology Sydney, Ultimo, 2007 NSW, Australia
| | - Katherina Petrou
- School of Life Sciences, University of Technology Sydney, Ultimo, 2007 NSW, Australia
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24
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Hopkins FE, Bell TG, Yang M, Suggett DJ, Steinke M. Air exposure of coral is a significant source of dimethylsulfide (DMS) to the atmosphere. Sci Rep 2016; 6:36031. [PMID: 27796323 PMCID: PMC5086842 DOI: 10.1038/srep36031] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2016] [Accepted: 10/10/2016] [Indexed: 12/21/2022] Open
Abstract
Corals are prolific producers of dimethylsulfoniopropionate (DMSP). High atmospheric concentrations of the DMSP breakdown product dimethylsulfide (DMS) have been linked to coral reefs during low tides. DMS is a potentially key sulfur source to the tropical atmosphere, but DMS emission from corals during tidal exposure is not well quantified. Here we show that gas phase DMS concentrations (DMSgas) increased by an order of magnitude when three Indo-Pacific corals were exposed to air in laboratory experiments. Upon re-submersion, an additional rapid rise in DMSgas was observed, reflecting increased production by the coral and/or dissolution of DMS-rich mucus formed by the coral during air exposure. Depletion in DMS following re-submersion was likely due to biologically-driven conversion of DMS to dimethylsulfoxide (DMSO). Fast Repetition Rate fluorometry showed downregulated photosynthesis during air exposure but rapid recovery upon re-submersion, suggesting that DMS enhances coral tolerance to oxidative stress during a process that can induce photoinhibition. We estimate that DMS emission from exposed coral reefs may be comparable in magnitude to emissions from other marine DMS hotspots. Coral DMS emission likely comprises a regular and significant source of sulfur to the tropical marine atmosphere, which is currently unrecognised in global DMS emission estimates and Earth System Models.
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Affiliation(s)
- Frances E Hopkins
- Plymouth Marine Laboratory, Prospect Place, Plymouth, PL1 3DH, United Kingdom
| | - Thomas G Bell
- Plymouth Marine Laboratory, Prospect Place, Plymouth, PL1 3DH, United Kingdom
| | - Mingxi Yang
- Plymouth Marine Laboratory, Prospect Place, Plymouth, PL1 3DH, United Kingdom
| | - David J Suggett
- School of Biological Sciences, University of Essex, Wivenhoe Park, Colchester, CO4 3SQ, United Kingdom.,Climate Change Research Cluster, University of Technology Sydney, PO Box 123, Broadway NSW 2007, Australia
| | - Michael Steinke
- School of Biological Sciences, University of Essex, Wivenhoe Park, Colchester, CO4 3SQ, United Kingdom
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