Salinization effects on coastal ecosystems: a terrestrial model ecosystem approach

Microbial diversity and functions in saline soils: A review from a biogeochemical perspective

BACKGROUND

Soil salinization threatens food security and ecosystem health, and is one of the important drivers to the degradation of many ecosystems around the world. Soil microorganisms have extremely high diversity and participate in a variety of key ecological processes. They are important guarantees for soil health and sustainable ecosystem development. However, our understanding of the diversity and function of soil microorganisms under the change of increased soil salinization is fragmented.

AIM OF REVIEW

Here, we summarize the changes in soil microbial diversity and function under the influence of soil salinization in diverse natural ecosystems. We particularly focus on the diversity of soil bacteria and fungi under salt stress and the changes in their emerging functions (such as their mediated biogeochemical processes). This study also discusses how to use the soil microbiome in saline soils to deal with soil salinization for supporting sustainable ecosystems, and puts forward the knowledge gaps and the research directions that need to be strengthened in the future.

KEY SCIENTIFIC CONCEPTS OF REVIEW

Due to the rapid development of molecular-based biotechnology (especially high-throughput sequencing technology), the diversity and community composition and functional genes of soil microorganisms have been extensively characterized in different habitats. Clarifying the responding pattern of microbial-mediated nutrient cycling under salt stress and developing and utilizing microorganisms to weaken the adverse effects of salt stress on plants and soil, which are of guiding significance for agricultural production and ecosystem management in saline lands.

The Anthropogenic Salt Cycle

Increasing salt production and use is shifting the natural balances of salt ions across Earth systems, causing interrelated effects across biophysical systems collectively known as freshwater salinization syndrome. In this Review, we conceptualize the natural salt cycle and synthesize increasing global trends of salt production and riverine salt concentrations and fluxes. The natural salt cycle is primarily driven by relatively slow geologic and hydrologic processes that bring different salts to the surface of the Earth. Anthropogenic activities have accelerated the processes, timescales and magnitudes of salt fluxes and altered their directionality, creating an anthropogenic salt cycle. Global salt production has increased rapidly over the past century for different salts, with approximately 300 Mt of NaCl produced per year. A salt budget for the USA suggests that salt fluxes in rivers can be within similar orders of magnitude as anthropogenic salt fluxes, and there can be substantial accumulation of salt in watersheds. Excess salt propagates along the anthropogenic salt cycle, causing freshwater salinization syndrome to extend beyond freshwater supplies and affect food and energy production, air quality, human health and infrastructure. There is a need to identify environmental limits and thresholds for salt ions and reduce salinization before planetary boundaries are exceeded, causing serious or irreversible damage across Earth systems.

Spatial patterns and seasonal timing of increasing riverine specific conductance from 1998 to 2018 suggest legacy contamination in the Delaware River Basin

Increasing salinization of freshwater threatens water supplies that support a range of human and ecological uses. The latest assessments of Delaware River Basin (DRB) surface-water-quality changes indicate widespread salinization has occurred in recent decades, which may lead to meaningful degradation in water quality. To better understand how and when salinity transport occurs and implications for DRB streams, this study: 1) explores the variability of specific conductance (SC) trends spatially and seasonally from 1998 to 2018, and 2) investigates how trends relate to streamflow, land disturbance, and impervious surface area to better understand regional salinization drivers. We find widespread increases in SC across the DRB, with several sites in the lower basin exceeding thresholds for aquatic life and experiencing increasing frequencies of exceedance over time. In general, the greatest basin wide increases in SC occurred during low flow conditions, indicating that a legacy component resulting from subsurface retention and transport processes has driven observed changes in riverine SC. For a subset of sites in the lower basin, where impervious area and cumulative land disturbance are higher, the greatest SC increases occurred during high flow conditions in winter months. Given the patterns of SC and watershed changes across the basin, as well as strong relationships between SC trends and sodium and chloride trends, deicing salt appears to be a likely driver of observed SC change. Even if deicing salt application plateaus or declines in coming years, the continued release and transport of the legacy subsurface component may still contribute to elevated DRB riverine SC.

Soil salinity and its associated effects on soil microorganisms, greenhouse gas emissions, crop yield, biodiversity and desertification: A review

Significant research has been conducted on the effects of soil salinity issue on agricultural productivity. However, limited consideration has been given to its critical effects on soil biogeochemistry (e.g., soil microorganisms, soil organic carbon and greenhouse gas (GHG) emissions), land desertification, and biodiversity loss. This article is based on synthesis of information in 238 articles published between 1989 and 2022 on these effects of soil salinity. Principal findings are as follows: (1) salinity affects microbial community composition and soil enzyme activities due to changes in osmotic pressure and ion effects; (2) soil salinity reduces soil organic carbon (SOC) content and alters GHG emissions, which is a serious issue under intensifying agriculture and global warming scenarios; (3) soil salinity can reduce crop yield up to 58 %; (4) soil salinity, even at low levels, can cause profound alteration in soil biodiversity; (5) due to severe soil salinity, some soils are reaching critical desertification status; (6) innovate mitigation strategies of soil salinity need to be approached in a way that should support the United Nations Sustainable Development Goals (UN-SDGs). Knowledge gaps still exist mainly in the effects of salinity especially, responses of GHG emissions and biodiversity. Previous experiences quantifying soil salinity effects remained small-scale, and inappropriate research methods were sometimes applied for investigating soil salinity effects. Therefore, further studies are urgently required to improve our understanding on the effects of salinity, address salinity effects in larger-scale, and develop innovative research methods.

Moisture movement, soil salt migration, and nitrogen transformation under different irrigation conditions: Field experimental research

Irrigation and fertilizer application can lead to significant changes in groundwater quality. In this study, a field irrigation experiment was carried out from April 9 to 23, 2021 under irrigation and fertigation conditions to understand the mechanisms of moisture movement, soil salt migration, and nitrogen transformation in the soil profile. Continuous in-situ monitoring and sampling of soil and irrigation water, as well as stable isotopes, chemical parameters, and soluble salt analyses, were performed in this research. The results showed that the time cost by the irrigation water in the vadose zone was about 5 h. The infiltrated irrigation water was accompanied by high concentrations of soluble salts, leached from the soil layers of 20-80 cm and 100-150 cm, which is associated with the leaching of Na⁺, Cl^-, SO₄^2-, and Ca²⁺ and the dissolution of minerals such as gypsum and halite. Furthermore, the variations in nitrogen concentrations (NH₄⁺ and NO₃^-) in the soil profile suggested that fertilizer application was the main source of NO₃^- in the soil and groundwater, while irrigation was the biggest driving force for nitrogen transport and transformation in soil. The application of urea fertilizer can increase the content of ammonium nitrogen at the soil layer of 0-80 cm. This nitrogen form can be subsequently transformed to nitrate nitrogen during the water transport to the groundwater. The current study provides a strong scientific basis for the protection and management of groundwater and soil quality in agricultural areas.

Impact of Pseudomonas sp. SVB-B33 on Stress- and Cell Wall-Related Genes in Roots and Leaves of Hemp under Salinity

Salinity is a type of abiotic stress that negatively affects plant growth and development. Textile hemp (Cannabis sativa L.) is an important multi-purpose crop that shows sensitivity to salt stress in a genotype- and developmental stage-dependent manner. The root and shoot biomasses decrease in the presence of NaCl during vegetative growth and several stress-responsive genes are activated. Finding environmentally friendly ways to increase plant health and resilience to exogenous stresses is important for a sustainable agriculture. In this context, the use of beneficial bacteria, collectively referred to as plant growth-promoting bacteria (PGPB), is becoming an attractive and emergent agricultural strategy. In this study, data are provided on the effects of a Pseudomonas isolate (Pseudomonas sp. SVB-B33) phylogenetically closely related to P. psychrotolerans applied via roots to salt-stressed hemp. The application of both living and dead bacteria impacts the fresh weight of the root biomass, as well as the expression of several stress-related genes in roots and leaves. These results pave the way to future investigations on the use of Pseudomonas sp. SVB-B33 in combination with silica to mitigate stress symptoms and increase the resilience to other forms of exogenous stresses in textile hemp.

Distance to coastline modulates morphology and population structure in a coastal amphibian

Salinization due to sea-level rise and marine submersions is expected to strongly impact coastal ecosystems. Exposure to salinity can negatively impact biodiversity especially in coastal wetlands. To understand comprehensively the consequences of environmental salinization on coastal biodiversity, it is essential to document how coastal species currently respond to exposure to salinity. In this study, we investigated how variations of environmental salinity relative to the distance to the ocean influence population structure (age ratio and sex ratio), and individual hydro-mineral balance (osmolality) and morphology (size, mass, condition) in the western spadefoot toad (Pelobates cultripes) in two populations from the French Atlantic coast. We show that distance to coastline strongly influences exposure to salt on a small spatial scale. Some variables (e.g., abundances, osmolality, morphology) responded similarly in both sites and may be related to salt deposition due to landward sea-spray. Interestingly, other variables (sex ratio and age ratio) displayed site-specific responses and appeared to be linked to the salinity of breeding sites. Distance to the shoreline appears to be a critical population structuring factor in this coastal salt-tolerant species. Future studies should investigate how distance to shoreline—and thus environmental salinity—can ultimately affect individual performances and fitness.

Nematodes as Ghosts of Land Use Past: Elucidating the Roles of Soil Nematode Community Studies as Indicators of Soil Health and Land Management Practices

Soil health is a matter of growing concern because of its degradation due to unsustainable anthropogenic activities over the last few decades. It is maintained by interactions among the components of the soil food web commonly concentrated in the vicinity of the plant roots, called the rhizosphere. The soil food web is dominated by nematodes. They occupy various trophic positions because of their diverse feeding habits. The free-living forms are mainly dependent on soil bacteria and fungi for their nutrition, while the parasitic forms feed on plant roots. The population of these two groups is regulated by the activities of predatory nematodes which can be carnivorous or omnivorous. The soil nematodes thereby partake responsibilities in nutrient cycling, mineralization and decomposition pathways which, in turn, affects the aboveground productivity. This intricately connected food web structure is vulnerable to disturbances like increased soil salinity, acidity, nitrogen enrichment, tillage, crop rotations, fertilizers, pesticides, soil amendment techniques and heavy metal pollution. The effects are reflected by alterations in the abundance and diversity of soil nematodes belonging to various trophic groups. These alterations have been formulated into measurable indices like maturity index (MI), structure index (SI), enrichment index (EI) and channel index (CI). The faunal profile and metabolic footprints of soil nematodes are latest developments in the field of nematode community analyses. Though these indices cannot replace the conventional soil ecotoxicological assays, they can give added information about soil biology which can be utilized to design sustainable land use practices.

Biomass ash formulations as sustainable improvers for mining soil health recovery: Linking soil properties and ecotoxicity

There is a growing need to recover degraded soils to restore their essential ecosystem services and limit damages of anthropic activities onto these systems. Safe and sustainable solutions for long-term recovery must be designed, ideally by recycling existing resources. Using ash from combustion of residual forest biomass at the pulp and paper industry is an interesting and sustainable strategy to recover mining soils. However, formulations must be found to limit the potential toxicity associated with soluble salts and chloride that ash contains. Here, we assessed the effectiveness of three field ash-based amendments for the recovery of three highly acidic soils from Portuguese abandoned mines. Three amendments were tested: an un-stabilized mixture of ash and biological sludge, granulated ash, and granulated ash mixed with composted sludge. One year after application in open field plots (in the scope of LIFE No_Waste project), soil health restoration was evaluated through (i) soil physico-chemical characterization and (ii) soil habitat functions though standardized ecotoxicological tests. This study highlights that stabilized materials provided nutrients, organic matter and alkalinity that corrected soil pH and decreased metal bioavailability, while controlling the release of soluble salts and chloride from ash. This soil improvement correlated with improved soil model organisms' reproduction and survival. For similar amendment, the native soil properties studied (as soil native electrical conductivity) affected the level of organism response. This work provides evidence that ash stabilization, formulation and supplementation with organic matter could be sustainable strategies to restore highly degraded mining soils and to recover their ecological functions. It further highlights the importance of analyzing combined effects on soil physico-chemical properties and ecological function recovery to assess restoration strategy efficiencies in complex multi-stressor environments.

Low-salinity transitions drive abrupt microbial response to sea-level change

The salinisation of many coastal ecosystems is underway and is expected to continue into the future because of sea-level rise and storm intensification brought about by the changing climate. However, the response of soil microbes to increasing salinity conditions within coastal environments is poorly understood, despite their importance for nutrient cascading, carbon sequestration and wider ecosystem functioning. Here, we demonstrate deterioration in the productivity of a top-tier microbial group (testate amoebae) with increasing coastal salinity, which we show to be consistent across phylogenetic groups, salinity gradients, environment types and latitude. Our results show that microbial changes occur in the very early stages of marine inundation, presaging more radical changes in soil and ecosystem function and providing an early warning of coastal salinisation that could be used to improve coastal planning and adaptation.

Seawater intrusion: an appraisal of taxa at most risk and safe salinity levels

Seawater intrusion into low-lying coastal ecosystems carries environmental risks. Salinity levels at these coastal ecosystems may vary substantially, causing ecological effects from mortality to several sublethal endpoints, such as depression of rates of feeding, somatic growth, or reproduction. This review attempts to establish safe salinity levels for both terrestrial and freshwater temperate ecosystems by integrating data available in the literature. We have four specific objectives: (i) to identify the most sensitive ecological taxa to seawater intrusion; (ii) to establish maximum acceptable concentrations-environmental quality standards (MAC-EQSs) for sea water (SW) from species sensitivity distributions (SSDs); (iii) to compile from the literature examples of saline intrusion [to be used as predicted environmental concentrations (PECs)] and to compute risk quotients for the temperate zone; and (iv) to assess whether sodium chloride (NaCl) is an appropriate surrogate for SW in ecological risk assessments by comparing SSD-derived values for NaCl and SW and by comparing these with field data. Zooplankton, early life stages of amphibians and freshwater mussels were the most sensitive ecological receptors for the freshwater compartment, while soil invertebrates were the most sensitive ecological receptors for the terrestrial compartment. Hazard concentration 5% (HC₅ ) values, defined as the concentration (herein measured as conductivity) that affects (causes lethal or sublethal effects) 5% of the species in a distribution, computed for SW were over 22 and 40 times lower than the conductivity of natural SW (≈ 52 mS/cm) for the freshwater and soil compartment, respectively. This sensitivity of both compartments means that small increments in salinity levels or small SW intrusions might represent severe risks for low-lying coastal ecosystems. Furthermore, the proximity between HC₅ values for the soil and freshwater compartments suggests that salinized soils might represent an additional risk for nearby freshwater systems. This sensitivity was corroborated by the derivation of risk quotients using real saline intrusion examples (PECs) collected from the literature: risk was >1 in 34 out of 37 examples. By contrast, comparisons of HC₅ values obtained from SSDs in field surveys or mesocosm studies suggest that natural communities are more resilient to salinization than expected. Finally, NaCl was found to be slightly more toxic than SW, at both lethal and sublethal levels, and, thus, is suggested to be an acceptable surrogate for use in risk assessment.

Differential Nutrient Uptake by Saltmarsh Plants Is Modified by Increasing Salinity

In Southern European estuaries and associated salt marshes, the anthropogenic nutrient inputs, together with longer drought periods, are leading to increasing eutrophication and salinization of these coastal ecosystems. In this study, uptake kinetics of ammonium, nitrate, and phosphate by three common plants in Palmones salt marsh (Southern Spain), Sarcocornia perennis ssp. alpini, Atriplex portulacoides, and Arthrocnemum macrostachyum were measured in hydroponic cultures. We also determined how these uptakes could be modified by increasing salinity, adding NaCl to the incubation medium (from 170 to 1,025 mM). Kinetic parameters are analyzed to understand the competition of the three species for nutrient resources under realistic most frequent concentrations in the salt marsh. These results may also be useful to predict the possible changes in the community composition and distribution if trends in environmental changes persist. Atriplex portulacoides showed the highest V_max for ammonium, the most abundant nutrient in the salt marsh, while the highest affinity for this nutrient was observed in A. macrostachyum. Maximum uptake rates for nitrate were much lower than for ammonium, without significant differences among species. The highest V_max value for phosphate was observed in A. macrostachyum, whereas A. portulacoides presented the highest affinity for this nutrient. High salinity drastically affected the physiological response of these species, decreasing nutrient uptake. Sarcocornia perennis ssp. alpini and A. macrostachyum were not affected by salinity up to 510 mM NaCl, whereas A. portulacoides notably decreased its uptake capacity at 427 mM and even withered at 1,025 mM NaCl. At current most frequent concentrations of ammonium and phosphate in the salt marsh, S. perennis ssp. alpini is the most favored species, from the nutritional point of view. However, A. portulacoides could enhance its presence if the increasing ammonium load continues, although a simultaneous salinization would negatively affect its nutritional physiology.

Ontogenetic variation in salinity tolerance and ecophysiology of coastal dune plants

BACKGROUND AND AIMS

Global climate change includes shifts in temperature and precipitation, increases in the frequency and intensity of extreme weather events and sea level rise, which will drastically impact coastal ecosystems. The aim of this study is to quantify salinity tolerance and to identify physiological mechanisms underlying tolerance across wholeplant ontogeny in two widespread native coastal plant species in Hawai'i, Jacquemontia sandwicensis (Convolvulaceae) and Sida fallax (Malvaceae).

METHODS

At the seed, seedling, juvenile and mature ontogenetic stages, plants were exposed to high salinity watering treatments. Tolerance was assayed as the performance of stressed compared with control plants using multiple fitness metrics, including germination, survival, growth and reproduction. Potential physiological mechanisms underlying salinity tolerance were measured at each ontogenetic stage, including: photosynthesis and stomatal conductance rates, leaf thickness, leaf mass per area and biomass allocation.

KEY RESULTS

Salinity tolerance varied between species and across ontogeny but, overall, salinity tolerance increased across ontogeny. For both species, salinity exposure delayed flowering. Physiological and morphological leaf traits shifted across plant ontogeny and were highly plastic in response to salinity. Traits enhancing performance under high salinity varied across ontogeny and between species. For J. sandwicensis, water use efficiency enhanced growth for juvenile plants exposed to high salinity, while chlorophyll content positively influenced plant growth under salinity in the mature stage. For S. fallax, transpiration enhanced plant growth only under low salinity early in ontogeny; high transpiration constrained growth under high salinity across all ontogenetic stages.

CONCLUSIONS

That salinity effects vary across ontogenetic stages indicates that demographic consequences of sea level rise and coastal flooding will influence population dynamics in complex ways. Furthermore, even coastal dune plants presumably adapted to tolerate salinity demonstrate reduced ecophysiological performance, growth and reproduction under increased salinity, highlighting the conservation importance of experimental work to better project climate change effects on plants.

Geographical origin determines responses to salinity of Mediterranean caddisflies

Many freshwater ecosystems worldwide, and particularly Mediterranean ones, show increasing levels of salinity. These changes in water conditions could affect abundance and distribution of inhabiting species as well as the provision of ecosystem services. In this study we conduct laboratory experiments using the macroinvertebrate Smicridea annulicornis as a model organism. Our factorial experiments were designed to evaluate the effects of geographical origin of organisms and salinity levels on survival and behavioral responses of caddisflies. The experimental organisms were captured from rivers belonging to three hydrological basins along a 450 Km latitudinal gradient in the Mediterranean region of Chile. Animals were exposed to three conductivity levels, from 180 to 1400 μS/cm, close to the historical averages of the source rivers. We measured the behavioral responses to experimental stimuli and the survival time. Our results showed that geographical origin shaped the behavioral and survival responses to salinity. In particular, survival and activity decreased more strongly with increasing salinity in organisms coming from more dilute waters. This suggests local adaptation to be determinant for salinity responses in this benthic invertebrate species. In the current scenario of fast temporal and spatial changes in water levels and salt concentration, the conservation of geographic intra-specific variation of aquatic species is crucial for lowering the risk of salinity-driven biodiversity loss.

Assess Effectiveness of Salt Removal by a Subsurface Drainage with Bundled Crop Straws in Coastal Saline Soil Using HYDRUS-3D

The low permeability of soil and high investment of salt management pose great challenges for implementation of land reclamation in coastal areas. In this study, a temporary soil leaching system was tested in which bundled maize straw (straw drainage module, SDM) was operated as a subsurface drainage tube and diluted seawater was used for leaching. A preliminary field experiment was conducted in coastal soil-filled lysimeters to examine the system’s feasibility and a numerical model (HYDRUS-3D) based on field measured data was designed to simulate the entire leaching process. The simulation results showed that the soil water velocity and the non-uniformity of salt distribution were apparently enhanced in the region approaching the drain outlet. The mass balance information indicated that the amount of water drained with SDM accounts for 37.9–66.0% of the total amount of leaching water, and the mass of salt removal was about 1.7 times that of the salt input from the diluted seawater. Additional simulations were conducted to explore the impacts of the design parameters, including leaching amount, the salinity of leaching water, and the number of leaching events on the desalination performance of the leaching system. Such simulations showed that the salt removal efficiency and soil desalination rate both were negatively related to the seawater mixture rate but were positively associated with the amount of leaching water. Increasing the leaching times, the salt removal efficiency was gradually decreased in all treatments, but the soil desalination rate was decreased only in the treatments leached with less diluted seawater. Our results confirmed the feasibility of the SDM leaching system in soil desalination and lay a good foundation for this system application in initial reclamation of saline coastal land.

Salt in freshwaters: causes, effects and prospects - introduction to the theme issue

Humans are globally increasing the salt concentration of freshwaters (i.e. freshwater salinization), leading to significant effects at the population, community and ecosystem level. The present theme issue focuses on priority research questions and delivers results that contribute to shaping the future research agenda on freshwater salinization as well as fostering our capacity to manage salinization. The issue is structured along five topics: (i) the estimation of future salinity and evaluation of the relative contribution of the different drivers; (ii) the physiological responses of organisms to alterations in ion concentrations with a specific focus on the osmophysiology of freshwater insects and the responses of different organisims to seawater intrusion; (iii) the impact of salinization on ecosystem functioning, also considering the connections between riparian and stream ecosystems; (iv) the role of context in moderating the response to salinization. The contributions scrutinise the role of additional stressors, biotic interactions, the identify of the ions and their ratios, as well as of the biogeographic and evolutionary context; and (v) the public discourse on salinization and recommendations for management and regulation. In this paper we introduce the general background of salinization, outline research gaps and report key findings from the contributions to this theme issue.This article is part of the theme issue 'Salt in freshwaters: causes, ecological consequences and future prospects'.