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For: Kämpfer P, Young CC, Arun AB, Shen FT, Jäckel U, Rosselló-Mora R, Lai WA, Rekha PD. Pseudolabrys taiwanensis gen. nov., sp. nov., an alphaproteobacterium isolated from soil. Int J Syst Evol Microbiol 2006;56:2469-2472. [PMID: 17012581 DOI: 10.1099/ijs.0.64124-0] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
Number Cited by Other Article(s)
1
Zhao M, Yang Y, Zhang H, Li Q, Zhao X, Guo X, Liu W, Wan F. Asymmetric succession in soil microbial communities enhances the competitive advantage of invasive alien plants. MICROBIOME 2024;12:265. [PMID: 39707566 DOI: 10.1186/s40168-024-01989-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2024] [Accepted: 11/26/2024] [Indexed: 12/23/2024]
2
da Costa Soares S, Vezzani FM, Favaretto N, Auler AC, da Silva Coelho I, de Sousa Pires A, Cruz LM, de Souza EM, Barth G. Effect of long-term liquid dairy manure application on activity and structure of bacteria and archaea in no-till soils depends on plant in development. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024;31:54713-54728. [PMID: 39210225 DOI: 10.1007/s11356-024-34762-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2024] [Accepted: 08/16/2024] [Indexed: 09/04/2024]
3
Hou A, Fu H, Liu L, Su X, Zhang S, Lai J, Sun F. Exploring the distribution and co-occurrence of rpf-like genes and nitrogen-cycling genes in water reservoir sediments. Front Microbiol 2024;15:1433046. [PMID: 39104579 PMCID: PMC11298755 DOI: 10.3389/fmicb.2024.1433046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2024] [Accepted: 07/12/2024] [Indexed: 08/07/2024]  Open
4
Hale B, Watts C, Conatser M, Brown E, Wijeratne AJ. Fine-scale characterization of the soybean rhizosphere microbiome via synthetic long reads and avidity sequencing. ENVIRONMENTAL MICROBIOME 2024;19:46. [PMID: 38997772 PMCID: PMC11241880 DOI: 10.1186/s40793-024-00590-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2024] [Accepted: 07/03/2024] [Indexed: 07/14/2024]
5
Belykh E, Maystrenko T, Velegzhaninov I, Tavleeva M, Rasova E, Rybak A. Taxonomic Diversity and Functional Traits of Soil Bacterial Communities under Radioactive Contamination: A Review. Microorganisms 2024;12:733. [PMID: 38674676 PMCID: PMC11051952 DOI: 10.3390/microorganisms12040733] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2024] [Revised: 03/28/2024] [Accepted: 04/01/2024] [Indexed: 04/28/2024]  Open
6
Zhang L, Hu Y, Chen Y, Qi D, Cai B, Zhao Y, Li Z, Wang Y, Nie Z, Xie J, Wang W. Cadmium-tolerant Bacillus cereus 2-7 alleviates the phytotoxicity of cadmium exposure in banana plantlets. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023;903:166645. [PMID: 37657542 DOI: 10.1016/j.scitotenv.2023.166645] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2023] [Revised: 08/05/2023] [Accepted: 08/26/2023] [Indexed: 09/03/2023]
7
Saenz C, Fang Q, Gnanasekaran T, Trammell SAJ, Buijink JA, Pisano P, Wierer M, Moens F, Lengger B, Brejnrod A, Arumugam M. Clostridium scindens secretome suppresses virulence gene expression of Clostridioides difficile in a bile acid-independent manner. Microbiol Spectr 2023;11:e0393322. [PMID: 37750706 PMCID: PMC10581174 DOI: 10.1128/spectrum.03933-22] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2022] [Accepted: 08/08/2023] [Indexed: 09/27/2023]  Open
8
Rao L, Gu D, Xiang X, Zeng J, Wu Y, Lin X, Christie P. Impact of lignin constituents on the bacterial community and polycyclic aromatic hydrocarbon co-metabolism in an agricultural soil. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023;333:122105. [PMID: 37356789 DOI: 10.1016/j.envpol.2023.122105] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2023] [Revised: 06/13/2023] [Accepted: 06/22/2023] [Indexed: 06/27/2023]
9
Avontuur JR, Wilken PM, Palmer M, Coetzee MPA, Stępkowski T, Venter SN, Steenkamp ET. Complex evolutionary history of photosynthesis in Bradyrhizobium. Microb Genom 2023;9:001105. [PMID: 37676703 PMCID: PMC10569730 DOI: 10.1099/mgen.0.001105] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Accepted: 08/28/2023] [Indexed: 09/08/2023]  Open
10
Gupta Y, Hossain M, Islam MR, Talukder MMH, Khokon MAR, Uddin MM, Kabir H, Carey M, Ralphs K, de Moraes NV, Meharg AA, Meharg C. Recycled Household Ash in Rice Paddies of Bangladesh for Sustainable Production of Rice Without Altering Grain Arsenic and Cadmium. EXPOSURE AND HEALTH 2023;16:87-99. [PMID: 38313597 PMCID: PMC10830805 DOI: 10.1007/s12403-023-00539-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/21/2022] [Revised: 01/13/2023] [Accepted: 01/28/2023] [Indexed: 02/06/2024]
11
Zverev A, Kimeklis A, Kichko A, Gladkov G, Andronov E, Abakumov E. Microbial features of mature and abandoned soils in refractory clay deposits. BMC Microbiol 2022;22:237. [PMID: 36195831 PMCID: PMC9531468 DOI: 10.1186/s12866-022-02634-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2021] [Accepted: 09/07/2022] [Indexed: 11/10/2022]  Open
12
Qi M, Berry JC, Veley KW, O'Connor L, Finkel OM, Salas-González I, Kuhs M, Jupe J, Holcomb E, Glavina Del Rio T, Creech C, Liu P, Tringe SG, Dangl JL, Schachtman DP, Bart RS. Identification of beneficial and detrimental bacteria impacting sorghum responses to drought using multi-scale and multi-system microbiome comparisons. THE ISME JOURNAL 2022;16:1957-1969. [PMID: 35523959 PMCID: PMC9296637 DOI: 10.1038/s41396-022-01245-4] [Citation(s) in RCA: 31] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/26/2021] [Revised: 04/08/2022] [Accepted: 04/12/2022] [Indexed: 12/12/2022]
13
Jung GY, Nam IH, Kim SJ. Undibacter mobilis gen. nov., sp. nov. isolated from an artificial wetland in Okcheon, Korea. Int J Syst Evol Microbiol 2022;72. [DOI: 10.1099/ijsem.0.005369] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
14
Li S, Liao Y, Pang Y, Dong X, Strous M, Ji G. Denitrification and dissimilatory nitrate reduction to ammonia in long-term lake sediment microcosms with iron(II). THE SCIENCE OF THE TOTAL ENVIRONMENT 2022;807:150835. [PMID: 34627917 DOI: 10.1016/j.scitotenv.2021.150835] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Revised: 09/19/2021] [Accepted: 10/02/2021] [Indexed: 06/13/2023]
15
Zhang M, Jin BJ, Bi QF, Li KJ, Sun CL, Lin XY, Zhu YG. Variations of earthworm gut bacterial community composition and metabolic functions in coastal upland soil along a 700-year reclamation chronosequence. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022;804:149994. [PMID: 34798714 DOI: 10.1016/j.scitotenv.2021.149994] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2021] [Revised: 08/23/2021] [Accepted: 08/24/2021] [Indexed: 06/13/2023]
16
Zhang Y, Zhang J, Shi B, Li B, Du Z, Wang J, Zhu L, Wang J. Effects of cloransulam-methyl and diclosulam on soil nitrogen and carbon cycle-related microorganisms. JOURNAL OF HAZARDOUS MATERIALS 2021;418:126395. [PMID: 34329028 DOI: 10.1016/j.jhazmat.2021.126395] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2021] [Revised: 05/27/2021] [Accepted: 06/10/2021] [Indexed: 06/13/2023]
17
Truu M, Nõlvak H, Ostonen I, Oopkaup K, Maddison M, Ligi T, Espenberg M, Uri V, Mander Ü, Truu J. Soil Bacterial and Archaeal Communities and Their Potential to Perform N-Cycling Processes in Soils of Boreal Forests Growing on Well-Drained Peat. Front Microbiol 2020;11:591358. [PMID: 33343531 PMCID: PMC7744593 DOI: 10.3389/fmicb.2020.591358] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2020] [Accepted: 11/16/2020] [Indexed: 12/18/2022]  Open
18
Microbiota in Waterlogged Archaeological Wood: Use of Next-Generation Sequencing to Evaluate the Risk of Biodegradation. APPLIED SCIENCES-BASEL 2020. [DOI: 10.3390/app10134636] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
19
Successional Variation in the Soil Microbial Community in Odaesan National Park, Korea. SUSTAINABILITY 2020. [DOI: 10.3390/su12114795] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
20
Hördt A, López MG, Meier-Kolthoff JP, Schleuning M, Weinhold LM, Tindall BJ, Gronow S, Kyrpides NC, Woyke T, Göker M. Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria. Front Microbiol 2020;11:468. [PMID: 32373076 PMCID: PMC7179689 DOI: 10.3389/fmicb.2020.00468] [Citation(s) in RCA: 298] [Impact Index Per Article: 59.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2019] [Accepted: 03/04/2020] [Indexed: 11/13/2022]  Open
21
Thouin H, Battaglia-Brunet F, Norini MP, Joulian C, Hellal J, Le Forestier L, Dupraz S, Gautret P. Microbial community response to environmental changes in a technosol historically contaminated by the burning of chemical ammunitions. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019;697:134108. [PMID: 32380607 DOI: 10.1016/j.scitotenv.2019.134108] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2019] [Revised: 07/30/2019] [Accepted: 08/24/2019] [Indexed: 06/11/2023]
22
Akter S, Shazib SUA, Shin MK. Segnochrobactrum spirostomi gen. nov., sp. nov., isolated from the ciliate Spirostomum yagiui and description of a novel family, Segnochrobactraceae fam. nov. within the order Rhizobiales of the class Alphaproteobacteria. Int J Syst Evol Microbiol 2019;70:1250-1258. [PMID: 31800387 PMCID: PMC7397251 DOI: 10.1099/ijsem.0.003907] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]  Open
23
Liu JL, Yao J, Duran R, Mihucz VG, Hudson-Edwards KA. Bacterial shifts during in-situ mineralization bio-treatment to non-ferrous metal(loid) tailings. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2019;255:113165. [PMID: 31546074 DOI: 10.1016/j.envpol.2019.113165] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2019] [Revised: 09/01/2019] [Accepted: 09/02/2019] [Indexed: 06/10/2023]
24
Responses of Microbial Communities and Interaction Networks to Different Management Practices in Tea Plantation Soils. SUSTAINABILITY 2019. [DOI: 10.3390/su11164428] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
25
Exposure to different arsenic species drives the establishment of iron- and sulfur-oxidizing bacteria on rice root iron plaques. World J Microbiol Biotechnol 2019;35:117. [DOI: 10.1007/s11274-019-2690-1] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2019] [Accepted: 07/07/2019] [Indexed: 10/26/2022]
26
Wongkiew S, Park MR, Chandran K, Khanal SK. Aquaponic Systems for Sustainable Resource Recovery: Linking Nitrogen Transformations to Microbial Communities. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2018;52:12728-12739. [PMID: 30264997 DOI: 10.1021/acs.est.8b04177] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
27
Zhou X, Wu F. Vanillic acid changed cucumber (Cucumis sativus L.) seedling rhizosphere total bacterial, Pseudomonas and Bacillus spp. communities. Sci Rep 2018;8:4929. [PMID: 29563548 PMCID: PMC5862977 DOI: 10.1038/s41598-018-23406-2] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2017] [Accepted: 03/12/2018] [Indexed: 01/01/2023]  Open
28
Agafonova NV, Kaparullina EN, Trotsenko YA, Doronina NV. Ancylobacter sonchi sp. nov., a novel methylotrophic bacterium frоm roots of Sonchus arvensis L. Int J Syst Evol Microbiol 2017;67:4552-4558. [PMID: 28984222 DOI: 10.1099/ijsem.0.002330] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
29
Nacke H, Goldmann K, Schöning I, Pfeiffer B, Kaiser K, Castillo-Villamizar GA, Schrumpf M, Buscot F, Daniel R, Wubet T. Fine Spatial Scale Variation of Soil Microbial Communities under European Beech and Norway Spruce. Front Microbiol 2016;7:2067. [PMID: 28066384 PMCID: PMC5177625 DOI: 10.3389/fmicb.2016.02067] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2016] [Accepted: 12/07/2016] [Indexed: 01/23/2023]  Open
30
Noguchi M, Kurisu F, Sekiguchi Y, Kasuga I, Furumai H. Microbial community structure of methanogenic benzene-degrading cultures enriched from five different sediments. J GEN APPL MICROBIOL 2016;62:266-271. [PMID: 27600356 DOI: 10.2323/jgam.2016.04.001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
31
Kim KK, Lee KC, Eom MK, Kim JS, Kim DS, Ko SH, Kim BH, Lee JS. Variibacter gotjawalensis gen. nov., sp. nov., isolated from soil of a lava forest. Antonie van Leeuwenhoek 2014;105:915-24. [PMID: 24599521 DOI: 10.1007/s10482-014-0146-z] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2013] [Accepted: 02/25/2014] [Indexed: 11/28/2022]
32
Direito SOL, Zaura E, Little M, Ehrenfreund P, Röling WFM. Systematic evaluation of bias in microbial community profiles induced by whole genome amplification. Environ Microbiol 2014;16:643-57. [PMID: 24372985 DOI: 10.1111/1462-2920.12365] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2013] [Revised: 12/10/2013] [Accepted: 12/17/2013] [Indexed: 11/28/2022]
33
Mowlick S, Inoue T, Takehara T, Kaku N, Ueki K, Ueki A. Changes and recovery of soil bacterial communities influenced by biological soil disinfestation as compared with chloropicrin-treatment. AMB Express 2013;3:46. [PMID: 23958081 PMCID: PMC3751922 DOI: 10.1186/2191-0855-3-46] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2013] [Accepted: 08/14/2013] [Indexed: 11/28/2022]  Open
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