Biocatalytic desulfurization (BDS) of petrodiesel fuels

Formation pathways of hydrogen polysulfides in sulfur-bearing natural gas reservoirs from density functional theory calculations

CONTEXT

The interaction mechanisms between a sulfur atom (S) and hydrogen sulfide (H2S), as well as the formation and stability of H2Sn (n = 2-9), are fundamental to understanding sulfur chemistry in natural gas reservoirs. Despite their importance, the abiogenic origins and reaction pathways of H2Sn in natural gas fields remain inadequately understood. Clarifying these mechanisms is essential for addressing sulfur deposition challenges, which have direct implications for extraction efficiency, operational safety, and reservoir management.

METHODS

This study utilized quantum chemistry calculations to systematically investigate the reaction mechanisms between sulfur atoms and hydrogen sulfide, with a particular focus on the formation of H2Sn. Transition state (TS) searches were conducted to identify energetically favorable reaction pathways, and intrinsic reaction coordinate (IRC) analyses were performed to validate the reaction trajectories. The kinetics and thermodynamics of H2S2 formation from elemental sulfur and H2S were comprehensively evaluated. Additionally, stability analyses were carried out to assess the relative stability of H2Sn under varying reservoir conditions, offering insights into their decomposition tendencies and subsequent formation of H2S and elemental sulfur (S8).

Enhancement of reduction of biodesulfurization end products by Paenibacillus strains

The work reported here aimed to enhance the reduction of the downstream intermediates 2-hydroxybiphenyl (2-HBP) and 2-(2'hydroxyphenyl ethan-1-al) produced by biodesulfurization of DBT (dibenzothiophene) and BT (benzothiophene) using Paenibacillus strains (32O-W and 32O-Y). Salicylaldehyde was used as a surrogate for 2-(2'hydroxybiphenyl ethan-1-al), as the two compounds are structurally very similar while the latter is not commercially available. Five strategies were tested using growth in media containing either 2-HBP or salicylaldehyde: use of single strain cultures, co-culturing, genetic engineering to express Vitreoscilla hemoglobin (VHb), cell immobilization, and nanoparticle coating of cells. Cell growth and reduction of 2-HBP and salicylaldehyde were measured during 96 h of culturing. Regarding 2-HBP reduction, 32O-Y was generally better than 32O-W (about 50% for free cells, and as much as 16% for immobilized cells, and 24% for coated cells); co-culturing did not provide any consistent advantage, while VHb expression increased utilization only for 32O-W (by about 50%). Immobilization and coating resulted in large improvements for both strains (as much as 3700%). Free, immobilized, and coated cells of 32O-Y all removed salicylaldehyde, while only immobilized 32O-W cells were able to do so. For 32O-Y, co-culturing and coating, but not VHb expression, resulted in improvements in salicylaldehyde reduction (of up to 31%). Thus, alginate immobilization or nanoparticle coating of bacterial cells may be useful approaches for enhancing the reduction of DBT or BT biodesulfurization end products, and thus the overall biodesulfurization process for petroleum and petroleum products.

Desulfurization of simulated and commercial liquid fuel on nano-ZnO fabricated walnut shells

The current investigation involved the development of activated carbon, juglans regia activated carbon (JRACs), from walnut shells, scientifically known as Juglans regia. The ZnO nanorods were loaded on the activated carbon and referred to as ZnO@JRACs. Desulfurization efficiency was assessed through batch adsorption and compared to commercial activated carbon known as DARCO. The materials were characterized using PXRD (powder X-ray diffraction), FTIR (Fourier-transform infrared spectroscopy), ICP-AES (inductively coupled plasma atomic emission spectroscopy), BET (Brunauer-Emmett-Teller) surface area analysis, TEM (transmission electron microscopy) imaging, and TGA (thermal gravimetric analysis). The findings indicated that the materials have oxygen functionalities, a porous morphology, and a substantial specific surface area (BET) of 1269.92 m2/g for ZnO@JRACs. Zn atom concentration in the ZnO@JRACs surface was determined to be 1.16 atomic percent using ICP-AES. Desulfurization experiments were conducted on three liquid fuels, namely a single component model fuel, MSF (multicomponent simulated fuel), and commercial fuel (kerosene), under optimized conditions (8 g/L adsorbent dosage in 10 mL of fuel, 15 min of contact time at room temperature). The conditions effectively removed ~ 98.9% of dibenzothiophene (DBT) from the single component model fuel. The observed order for adsorption capacity is as follows: ZnO@JRACs (63.6 mg g-1) > JRACs (46.3 mg g-1) > DARCO (26.1 mg g-1). The analysis of multicomponent simulated fuel (MSF) using gas chromatography-flame photometric detector (GC-FPD) revealed significant removal percentages for different types of thiophenic sulfur. Specifically, the removal percentages were ~ 46.2%, 97.6%, and 99.4% for benzothiophene, dibenzothiophene, and 4, 6-dimethyldibenzothiophene, respectively. Kinetic studies have shown that the adsorption process is governed by a pseudo second-order reaction. Additional thermodynamic studies were conducted to further investigate the mechanism of adsorption. The spent synthesized composite ZnO@JRACs were thermally regenerated and can be reused for up to four cycles.

Biochemical engineering for elemental sulfur from flue gases through multi-enzymatic based approaches - A review

Flue gases are the gases which are produced from industries related to chemical manufacturing, petrol refineries, power plants and ore processing plants. Along with other pollutants, sulfur present in the flue gas is detrimental to the environment. Therefore, environmentalists are concerned about its removal and recovery of resources from flue gases due to its activation ability in the atmosphere to transform into toxic substances. This review is aimed at a critical assessment of the techniques developed for resource recovery from flue gases. The manuscript discusses various bioreactors used in resource recovery such as hollow fibre membrane reactor, rotating biological contractor, sequential batch reactor, fluidized bed reactor, entrapped cell bioreactor and hybrid reactors. In conclusion, this manuscript provides a comprehensive analysis of the potential of thermotolerant and thermophilic microbes in sulfur removal. Additionally, it evaluates the efficacy of a multi-enzyme engineered bioreactor in this process. Furthermore, the study introduces a groundbreaking sustainable model for elemental sulfur recovery, offering promising prospects for environmentally-friendly and economically viable sulfur removal techniques in various industrial applications.

Biodesulfurization of organosulfur compounds by a trehalose biosurfactant producing Gordonia sp. isolated from crude oil contaminated soil

Certain factors hinder the commercialization of biodesulfurization process, including low substrate-specificity of the currently reported desulfurizing bacteria and restricted mass transfer of organic-sulfur compounds in biphasic systems. These obstacles must be addressed to clean organic-sulfur rich petro-fuels that pose serious environmental and health challenges. In current study, a dibenzothiophene desulfurizing strain, Gordonia rubripertincta W3S5 (source: oil contaminated soil) was systematically evaluated for its potential to remove sulfur from individual compounds and mixture of organic-sulfur compounds. Metabolic and genetic analyses confirmed that strain W3S5 desulfurized dibenzothiophene to 2-hydroxybiphenyl, suggesting that it follows the sulfur specific 4 S pathway. Furthermore, this strain demonstrated the ability to produce trehalose biosurfactants (with an EI24 of 53%) in the presence of dibenzothiophene, as confirmed by TLC and FTIR analyses. Various genome annotation tools, such as ClassicRAST, BlastKOALA, BV-BRC, and NCBI-PGAP, predicted the presence of otsA, otsB, treY, treZ, treP, and Trehalose-monomycolate lipid synthesis genes in the genomic pool of strain W3S5, confirming the existence of the OtsAB, TreYZ, and TreP pathways. Overall, these results underscore the potential of strain W3S5 as a valuable candidate for enhancing desulfurization efficiency and addressing the mass transfer challenges essential for achieving a scaled-up scenario.

Uncovering the Critical Factors that Enable Extractive Desulfurization of Fuels in Ionic Liquids and Deep Eutectic Solvents from Simulations

Environmental regulatory agencies have implemented stringent restrictions on the permissible levels of sulfur compounds in fuel to reduce harmful emissions and improve air quality. Problematically, traditional desulfurization methods have shown low effectiveness in the removal of refractory sulfur compounds, e.g., thiophene (TS), dibenzothiophene (DBT), and 4-methyldibenzothiophene (MDBT). In this work, molecular dynamics (MD) simulations and free energy perturbation (FEP) have been applied to investigate the use of ionic liquids (ILs) and deep eutectic solvents (DESs) as efficient TS/DBT/MDBT extractants. For the IL simulations, the selected cation was 1-butyl-3-methylimidazolium [BMIM] and the anions included chloride [Cl], thiocyanate [SCN], tetrafluoroborate [BF₄], hexafluorophosphate [PF₆], and bis(trifluoromethylsulfonyl)amide [NTf₂]. The DESs were composed of choline chloride with ethylene glycol (CCEtg) or with glycerol (CCGly). Calculation of excess chemical potentials predicted the ILs to be more promising extractants with energies lower by 1-3 kcal/mol compared to DESs. Increasing IL anion size was positively correlated to enhanced solvation of S-compounds, which was influenced by energetically dominant solute-anion interactions and favorable solute-[BMIM] π-π stacking. For the DESs, the solvent components offered a range of synergistic, yet comparatively weaker, electrostatic interactions that included hydrogen bonding and cation-π interactions. An in-depth analysis of the structure of IL and DES systems is presented, along with a discussion of the critical factors behind experimental trends of S-compound extraction efficiency.

Bio-catalytic degradation of dibenzothiophene (DBT) in petroleum distillate (diesel) by Pseudomonas spp

Biodesulfurization (BDS) was employed in this study to degrade dibenzothiophene (DBT) which accounts for 70% of the sulfur compounds in diesel using a synthetic and typical South African diesel in the aqueous and biphasic medium. Two Pseudomonas sp. bacteria namely Pseudomonas aeruginosa and Pseudomonas putida were used as biocatalysts. The desulfurization pathways of DBT by the two bacteria were determined by gas chromatography (GC)/mass spectrometry (MS) and High-Performance Liquid Chromatography (HPLC). Both organisms were found to produce 2-hydroxy biphenyl, the desulfurized product of DBT. Results showed BDS performance of 67.53% and 50.02%, by Pseudomonas aeruginosa and Pseudomonas putida, respectively for 500 ppm initial DBT concentration. In order to study the desulfurization of diesel oils obtained from an oil refinery, resting cells studies by Pseudomonas aeruginosa were carried out which showed a decrease of about 30% and 70.54% DBT removal for 5200 ppm in hydrodesulfurization (HDS) feed diesel and 120 ppm in HDS outlet diesel, respectively. Pseudomonas aeruginosa and Pseudomonas putida selectively degraded DBT to form 2-HBP. Application of these bacteria for the desulfurization of diesel showed promising potential for decreasing the sulfur content of South African diesel oil.

Bacterial Biological Factories Intended for the Desulfurization of Petroleum Products in Refineries

The removal of sulfur by deep hydrodesulfurization is expensive and environmentally unfriendly. Additionally, sulfur is not separated completely from heterocyclic poly-aromatic compounds. In nature, several microorganisms (Rhodococcus erythropolis IGTS8, Gordonia sp., Bacillus sp., Mycobacterium sp., Paenibacillus sp. A11-2 etc.) have been reported to remove sulfur from petroleum fractions. All these microbes remove sulfur from recalcitrant organosulfur compounds via the 4S pathway, showing potential for some organosulfur compounds only. Activity up to 100 µM/g dry cell weights is needed to meet the current demand for desulfurization. The present review describes the desulfurization capability of various microorganisms acting on several kinds of sulfur sources. Genetic engineering approaches on Gordonia sp. and other species have revealed a variety of good substrate ranges of desulfurization, both for aliphatic and aromatic organosulfur compounds. Whole genome sequence analysis and 4S pathway inhibition by a pTeR group inhibitor have also been discussed. Now, emphasis is being placed on how to commercialize the microbes for industrial-level applications by incorporating biodesulfurization into hydrodesulfurization systems. Thus, this review summarizes the potentialities of microbes for desulfurization of petroleum. The information included in this review could be useful for researchers as well as the economical commercialization of bacteria in petroleum industries.

Inter-Species Redox Coupling by Flavin Reductases and FMN-Dependent Two-Component Monooxygenases Undertaking Nucleophilic Baeyer-Villiger Biooxygenations

Using highly purified enzyme preparations throughout, initial kinetic studies demonstrated that the isoenzymic 2,5- and 3,6-diketocamphane mono-oxygenases from Pseudomonas putida ATCC 17453 and the LuxAB luciferase from Vibrio fischeri ATCC 7744 exhibit commonality in being FMN-dependent two-component monooxygenases that promote redox coupling by the transfer of flavin reductase-generated FMNH₂ by rapid free diffusion. Subsequent studies confirmed the comprehensive inter-species compatibility of both native and non-native flavin reductases with each of the tested monooxygenases. For all three monooxygenases, non-native flavin reductases from Escherichia coli ATCC 11105 and Aminobacter aminovorans ATCC 29600 were confirmed to be more efficient donators of FMNH₂ than the corresponding tested native flavin reductases. Some potential practical implications of these outcomes are considered for optimising FMNH₂-dependent biooxygenations of recognised practical and commercial value.

Biodesulfurization of Dibenzothiophene by Decorating Rhodococcus erythropolis IGTS8 Using Montmorillonite/Graphitic Carbon Nitride

Fossil fuels are the main sources of human energy, but their combustion releases toxic compounds of sulfur oxide. In the oil industry, using the optimal methods to eliminate sulfur compounds from fossil fuels is a very important issue. In this study, the performance of montmorillonite/graphitic carbon nitride (a new hybrid nanostructure) in increasing the biodesulfurization activity of Rhodococcus erythropolis IGTS8 was investigated. X-ray diffraction, Fourier-transform infrared spectroscopy, field emission scanning electron microscopy and transmission electron microscopy were used for the characterization of the nanoparticles. The effective factors in this process were determined. Optimum conditions for microorganisms were designed using the Design Expert software. Experiments were performed in a flask. The results indicated that the biodesulfurization activity of a microorganism in the presence of the nanostructure increases by 52%. In addition, in the presence of the nanostructure, the effective factors are: 1. concentration of the nanostructure; 2. concentration of sulfur; 3. cell concentration. In the absence of the nanostructure, the only effective factor is the concentration of sulfur. Through analysis of variance, the proposed models were presented to determine the concentration of the 2-hydroxy biphenyl produced by the microorganisms (biodesulfurization activity) in the presence and absence of the nanostructure. The proposed models were highly acceptable and consistent with experimental data. The results of a Gibbs assay showed that the biodesulfurization efficiency of in the presence of the nanostructure was increased by about 52%, which is a very satisfactory result. The biodesulfurization activity of decorated cells in a bioreactor showed a significant increase compared with nondecorated cells. Almost a two-fold improvement in biodesulfurization activity was obtained for decorated cells compared with free cells.

Photocatalytic Air Purification Using Functional Polymeric Carbon Nitrides

The techniques for the production of the environment have received attention because of the increasing air pollution, which results in a negative impact on the living environment of mankind. Over the decades, burgeoning interest in polymeric carbon nitride (PCN) based photocatalysts for heterogeneous catalysis of air pollutants has been witnessed, which is improved by harvesting visible light, layered/defective structures, functional groups, suitable/adjustable band positions, and existing Lewis basic sites. PCN-based photocatalytic air purification can reduce the negative impacts of the emission of air pollutants and convert the undesirable and harmful materials into value-added or nontoxic, or low-toxic chemicals. However, based on previous reports, the systematic summary and analysis of PCN-based photocatalysts in the catalytic elimination of air pollutants have not been reported. The research progress of functional PCN-based composite materials as photocatalysts for the removal of air pollutants is reviewed here. The working mechanisms of each enhancement modification are elucidated and discussed on structures (nanostructure, molecular structue, and composite) regarding their effects on light-absorption/utilization, reactant adsorption, intermediate/product desorption, charge kinetics, and reactive oxygen species production. Perspectives related to further challenges and directions as well as design strategies of PCN-based photocatalysts in the heterogeneous catalysis of air pollutants are also provided.

Non-hydrogen processes for simultaneous desulfurization and denitrogenation of light petroleum fuels-an elaborative review

The removal of sulfur- and nitrogen-containing compounds present in petroleum fractions is necessary to meet the stringent environmental regulations and to prevent the environment and humanity from the threats they pose. Conventional hydro-desulfurization and hydro-denitrogenation processes have evolved significantly over the past decade but are limited due to severe operating conditions and inefficiency in removing nitrogen-containing compounds. On the contrary, unconventional non-hydrogen methods for refining of crude oils are beneficial in terms of mild operating conditions and are efficient for eradicating both sulfur- and nitrogen-containing compounds. Despite being efficient for both sulfur and nitrogen-containing compounds, these techniques suffer due to the hindrance posed by the competitive nature of nitrogen-containing compounds. Thus, it is recommended to develop techniques that can remove both the compounds simultaneously and efficiently. Techniques for simultaneous removal of those compounds can also be expected to reduce the number of unit operations required during refining and can be energy-efficient as well. This elaborative review summarizes the developments done in this field in the past two decades. To improve the understanding of the scientific community towards the feasibility of simultaneous desulfurization and denitrogenation processes, the crucial parameters for efficient desulfurization-denitrogenation processes are also discussed. This review can be expected to encourage the scientific community to search for more economical, energy-efficient, and commercializable pathways for desulfurization-denitrogenation of petroleum oil.

Preparation of TiO2/porous glass-H with the coupling of photocatalysis oxidation-adsorption system in the initial position and its desulfurization performance on model fuel

TiO₂/porous glass-H as composite catalysts were synthesized hydrothermally in the presence of H₂O₂ using porous glass microspheres as carriers. The photocatalytic-adsorptive desulfurization of model fuel by composite catalysts was investigated under UV irradiation. The structure and morphology of the composite catalysts were characterized via scanning electron microscopy (SEM), N₂ adsorption, X-ray diffraction (XRD) and ultraviolet-visible spectroscopy (UV-vis). The results showed that TiO₂/porous glass-H exhibited a significantly enhanced photocatalytic-adsorption desulfurization performance due to its enhanced surface area, highly enhanced light absorption, and reduced recombination of photogenerated electron pairs compared with TiO₂/porous glass synthesized in the absence of H₂O₂. The optimized TiO₂ loading was 20% and the reaction temperature was 303.15 K, which could achieve almost 100% sulfur removal when 0.1 g catalyst was applied to a sulfide concentration of 300 mg L⁻¹. Based on the kinetic fitting of the obtained data, it was found that the rate-controlling step of sulfide adsorption on the catalyst was a molecular diffusion process and the adsorption intensity and adsorption capacity of the composite catalyst were significantly improved compared with the porous glass-H in the adsorption thermodynamic curve, and ΔS, ΔH and ΔG of the adsorption process were calculated. In addition, TiO₂/porous glass-H could be regenerated via simple heat treatment, exhibiting similar efficiency as the original TiO₂/porous glass-H after three regeneration cycles.

TiO₂/porous glass-H as composite catalysts were synthesized hydrothermally in the presence of H₂O₂ using porous glass microspheres as carriers.

Genomic analysis provides insights into the Gordonia sp. W3S5 taxonomy and sulfur metabolism-related genes

The Gordonia sp. W3S5, isolated from oil-polluted soil samples can remove sulfur from a variety of symmetric and asymmetric thiophenic compounds and diesel oil. Its draft genome sequence was comprised of 49 contigs, total genome size 4.86 Mb, and a G + C content of 67.50%. According to the current bacterial taxonomy procedures (16S rRNA gene sequence and overall genome-related index), the W3S5 was affiliated to Gordonia rubripertincta. Rapid Annotation using Subsystem Technology (ClassicRAST) server revealed that the W3S5 contains 4435 coding sequences, 404 subsystems and 60 sulfur metabolism genes. The RAST comparative genomic analysis showed that the genes connected with organic sulfur metabolism are majorly related to ssu and dszABC operons. Moreover, the comparison of orthologous gene clusters using OrthoVenn2 web server revealed a total of 4869 clusters, 2685 core orthologs, 632 shared orthologs and 112 unique ortholog clusters among the W3S5 and other type strains of Gordonia. This is the first report describing genome-based characterization of a Gordonia rubripertincta strain desulfurizing thiophenic compounds and diesel oil. The desulfurization potential of Gordonia rubripertincta W3S5 and genomic analyses revealed it as a valuable biocatalyst for process development to desulfurize a broad range of thiophenic sulfur-containing compounds, which are a major component of organic sulfur in petroleum oil.

SUPPLEMENTARY INFORMATION

The online version contains supplementary material available at 10.1007/s13205-021-02850-4.

Oil biodesulfurization: A review of applied analytical techniques

The wide use of fossil fuels and their associated environmental concerns, highlighted the importance of affordable and clean energy (goal 7), as adopted by the Sustainable Development Goals of the United Nations for 2030. For years now, the detection of sulfur components in liquid fuels is performed mainly for environmental and health purposes in compliance with the respective legislations. Towards this, the aerobic and anaerobic biodesulfurization (BDS) process, which entails the use of microorganisms to limit the sulfur concentration is followed. To ensure effective BDS, several traditional analytical methods are utilized, although they require bench-top, bulky, costly, and time-consuming instruments along with skilled personnel. The currently employed analytical methods are mostly chromatographic techniques (e.g. liquid and gas) coupled with various detectors. To start with, high-performance liquid chromatography with ultraviolet detector (HPLC-UV), as well as electrospray ionization-LC-mass spectrometry (ESI-LC-MS) were mostly reported. Additionally, many detectors were coupled to gas chromatography (CG) including atomic emission detector (GC-AED), flame ionization detector (GC-FID), flame photometric detector (GC-FPD), sulfur fluorescence detector (GC-SFD), mass selective detector (GC-MS), etc. The solid-phase microextraction (SPME) technique provides extra capabilities when added to the separation techniques. Towards the continuous interest in oil supercomplex synthesis, other atmospheric and surface desorption ionization techniques, as well as the multidimensional 2D chromatographic systems (GC × GC and LC × LC) were also investigated, due to their unsurpassed resolution power. The current review ends with final remarks per applied methodology and the necessity to respect and protect the human environment and life.

Desulfurization through Photocatalytic Oxidation: A Critical Review

Fuel oil, the most important strategic resource, has been widely used in industrial applications. However, the sulfur-containing compounds in fuel oil also present humanity with huge environmental issues and health concerns due to the hazardous combustion waste. To address this problem, the low vulcanization of fuel production technology has been intensively explored. Compared with traditional hydrodesulfurization technology, the newly emerged photocatalytic desulfurization has the advantages of milder operating conditions, lower energy consumption, and higher efficiency, holding great prospect to achieve deep desulfurization. Though great efforts have been made, the desulfurization catalysts still suffer from inferior light absorption, fast recombination of photocarriers, and poor structure modification. This Review summarizes recent development of photocatalytic desulfurization, including the desulfurization principle, current desulfurization challenges, and corresponding solutions. Particularly, the roles of defect engineering, hybrid coupling, and structure modifications in the enhancement of photocatalytic performance are emphasized. In addition, the photocatalytic desulfurization mechanism is also introduced with the ^. OH and ^. O₂ ^- radicals as main active species. Finally, some perspectives on the photocatalytic desulfurization are provided, which can further optimize the desulfurization efficiency and guide future photocatalyst design.

Conventional genetic manipulation of desulfurizing bacteria and prospects of using CRISPR-Cas systems for enhanced desulfurization activity

Highly active and stable biocatalysts are the prerequisite for industrial scale application of the biodesulfurization process. Scientists are making efforts for increasing the desulfurizing activity of native strains by employing various genetic engineering approaches. Nevertheless, the achieved desulfurization rate is lower than the industrial requirements. Thus, there is a dire need to use efficient genetic tools for precise genome editing of desulfurizing bacteria for enhanced efficiency. In comparison to the previously used genetic engineering tools the newly developed CRISPR-Cas is a more efficient and simple genetic tool that has been successfully applied for targeted genome modification of eukaryotes as well as prokaryotes. In this paper, we have reviewed the approaches, previously used to enhance the biodesulfurization rates of the sulfur metabolizing microorganisms and have discussed the potential of CRISPR-Cas systems in engineering desulfurizing biocatalysts. We have also proposed a model to construct competent desulfurizing recombinants involving use of CRISPR-Cas technology. The model can be used to over-express the dsz genes under a constitutive promoter in a suitable heterologous host, to get a steady expression of desulfurization pathway. This may serve as an inducement to develop better performing desulfurizing recombinant strains using CRISPR-Cas systems, which can be helpful in increasing the rate of biodesulfurization in future.

Investigation of Desulfurization Activity, Reusability, and Viability of Magnetite Coated Bacterial Cells

Background

Magnetic separation using magnetic nanoparticles can be used as a simple method to isolate desulfurizing bacteria from a biphasic oil/water system.

Objectives

Magnetite nanoparticles were applied to coat the surface of Rhodococcus erythropolis IGTS8 and Rhodococcus erythropolis FMF desulfurizing bacterial cells, and the viability and reusability of magnetite-coated bacteria evaluated by using various methods.

Material and Methods

Magnetite nanoparticles were synthesized through a reverse co-precipitation method. Glycine was added during and after the synthesis of magnetite nanoparticles to modify their surface and to stabilize the dispersion of the nanoparticles. The glycine-modified magnetite nanoparticles were immobilized on the surface of both oil-desulfurizing bacterial strains. Reusability of magnetite-coated bacterial cells was evaluated via assessing the desulfurization activity of bacteria via spectrophotometry using Gibb’s assay, after the separation of bacterial cells from 96h-cultures with the application of external magnetic field. In addition, CFU and fluorescence imaging were used to investigate the viability of magnetite-coated and free bacterial cells.

Results

TEM micrographs showed that magnetite nanoparticles have the size approximately 5.35±1.13 nm. Reusability results showed that both magnetite-coated bacterial strains maintain their activity even after 5 × 96h-cycles. The viability results revealed glycine-modified magnetite nanoparticles did not negatively affect the viability of two bacterial strains R. erythropolis IGTS8 and R. erythropolis FMF.

Conclusions

In conclusion, the glycine-modified magnetite nanoparticles have great capacity for immobilization and separation of desulfurizing bacteria from suspension.

Comparative transcriptomic analysis revealed the key pathways responsible for organic sulfur removal by thermophilic bacterium Geobacillus thermoglucosidasius W-2

Biodesulfurization is a promising method to desulfurize sulfur-containing compounds in oil with its unique advantages, such as environment-friendly treatments and moderate reaction conditions. In this study, a thermophilic bacterium Geobacillus thermoglucosidasius W-2 was reported to show nearly 40% and 55% desulfurization rates on heavy oil with 2.81% and 0.46% initial total sulfur content, respectively. Subsequently, comparative transcriptome analysis indicated that several possible key desulfurization-related genes of this strain were found to be differentially up-regulated induced by benzothiophene and dibenzothiophene, respectively. These desulfurization-related genes were considered to conduct key step to convert organic sulfur to inorganic sulfur. Moreover, the characterization of thermophilic alkanesulfonate monooxygenase systems SsuD₁/SsuE₁ and SsuD₂/SsuE₂ revealed that the enzymes exhibit considerable thermal and pH stability and wide substrates applicability. These enzymes probably endowed the strain W-2 with the ability to desulfurize oil and eliminate the sulfur-containing surfactants. Thus, this study provides novel alkanesulfonate monooxygenase systems that have the application potential for heavy oil biodesulfurization, oil demulsification and other biocatalytic processes.

Investigations in enhancement biodesulfurization of model compounds by ultrasound pre-oxidation

In this study, complicated model sulfur compounds in crude oil were biodesulfurized in a batch process by microbial consortium enriched from oil contaminated soil. Dibenzothiophene (DBT) was selected as model sulfur compounds. Ultrasonic radiation was used to pre-oxidize the model sulfur compounds before the biodesulfurization (BDS) process. The enhancement mechanism of ultrasound pre-oxidation (UPO) on the biodesulfurization of DBT was investigated. The effects of initial conditions on the biodesulfurization of DBT in UPO/BDS system such as solution initial pH, DBT initial concentration, sulfur source, biocatalyst initial concentration, and incubation temperature were discussed. The results show that the application of UPO before BDS procedure significantly improved the efficiency of the biodesulfurization and allowed sulfur removal in shorter time through oxidizing DBT to DBT sulfone, resulting in shortening the "4S" pathway for biodesulfurization from 4 steps to 2 steps, enhancement in reaction velocity and enzyme-substrate affinity as well as reduction in substrate inhibition. The concentration of 2-HBP increased fast with the use of ultrasound pre-oxidation, which was dependent on solution initial pH, DBT initial concentration, sulfur source, biocatalyst initial concentration, and incubation temperature.

Synthesis of bimetallic-organic framework Cu/Co-BTC and the improved performance of thiophene adsorption

A bimetallic-organic porous material (Cu/Co-BTC) with a paddle-wheel structure has been successfully synthesized by a solvothermal approach. The as-synthesized materials were characterized by XRD, SEM, ICP-AES, UV-Vis, TGA and N2 adsorption at 77 K. The prepared Cu/Co-BTC samples were investigated in thiophene (TP) adsorption from model gasolines by the fixed bed adsorption method at 298 K. The results showed that only a small amount of Co could be successfully introduced into the framework of HKUST-1, and the introduction of Co had little effect on the crystalline structure, morphology, porosity, and thermal stability. The bimetallic Cu/Co-BTC with a Cu/Co ratio of 174 displayed significantly improved adsorption desulfurization performance, showing an increase in breakthrough volume by 30% compared with HKUST-1, implying that the central metal in the MOF plays an important role in adsorption desulfurization. The addition of toluene or cyclohexene (3.20-3.30 vol%) as a competitor in the model gasoline led to a decline in desulfurization performance, especially when cyclohexene was added. The bimetallic Cu/Co-BTC showed a slight loss in breakthrough volume by only 5% after regenerating 7 times, displaying an excellent regeneration property.

On the road to cost-effective fossil fuel desulfurization byGordonia alkanivoransstrain 1B

Biodesulfurization (BDS) is an ecofriendly process that uses microorganisms to efficiently remove sulfur from fossil fuels. To make the BDS process economically competitive with the deep hydrodesulfurization process, which is currently used in the oil industry, it is necessary to improve several factors. One crucial limitation to be overcome, common within many other biotechnological processes, is the cost of the culture medium. Therefore, an important line of work to make BDS scale-up less costly is the optimization of the culture medium composition aiming to reduce operating expenses and maximize biocatalyst production. In this context, the main goal of this study was on the minimization of inorganic key components of sulfur-free mineral (SFM) medium in order to get the maximal production of efficient desulfurizing biocatalysts. Hence, a set of assays was carried out to develop an optimal culture medium containing minimal amounts of nitrogen (N) and magnesium (Mg) sources and trace elements solution (TES). These assays allowed the design of a SFMM (SFM minimum) medium containing 85% N-source, 25% Mg-source and 25% TES. Further validation consisted of testing this minimized medium using two carbon sources: the commercial C-source (glucose + fructose) versus Jerusalem artichoke juice (JAJ) as a cheaper alternative. SFMM medium allowed microbial cells to almost duplicate their specific desulfurization rate (q_2-HBP) for both tested C-sources, namely from 2.15 to 3.39 μmoL g⁻¹ (DCW) h⁻¹ for Fru + Glu and from 1.91 to 3.58 μmoL g⁻¹ (DCW) h⁻¹ for JAJ, achieving a similar net 2-hydroxybiphenyl produced per g of consumed sugar (∼17 μmoL g⁻¹). These results point out the great advantage of using cheaper culture medium that in addition enhances the bioprocess effectiveness, paving the way to a sustainable scale-up for fossil fuel BDS.

The utilization of desulfurizing microorganisms that can grow in low nutrient culture media without vitamins and other growth promoters (e.g. yeast extract, peptone) is an advantage for BDS upgrade since it may reduce the biocatalyst production costs significantly

Adsorptive desulfurization of liquid hydrocarbons using zeolite-based sorbents: a comprehensive review

Adsorptive desulfurization using modified Y zeolite is an efficient process for the removal of sulfur from transportation fuels.

Biodesulfurization of Thiophenic Compounds by a 2-Hydroxybiphenyl-Resistant Gordonia sp. HS126-4N Carrying dszABC Genes

Microorganisms can metabolize or transform a range of known chemical compounds present in fossil fuels by naturally having highly specific metabolic activities. In this context, the microbial desulfurization of fuels is an attractive and alternative process to the conventional hydrodesulfurization (HDS) process, since the thiophenic sulfur containing compounds such as dibenzothiophene (DBT) and benzothiophene (BT) cannot be removed by HDS. A DBT desulfurizing mesophilic bacterium, identified on the basis of 16S rRNA gene sequence as Gordonia sp. HS126-4N (source: periphery soil of a coal heap) has been evaluated for its biodesulfurization traits and potential to desulfurize the thiophenic compounds. The HPLC and LC/MS analyses of the metabolites produced from DBT desulfurization and PCR-based nucleotide sequence confirmation of the key desulfurizing genes (dszA/dszB/dszC) proved that HS126-4N could convert DBT to 2-hydroxybiphenyl (2-HBP) via the 4S pathway. The isolate could convert 0.2 mM of DBT to 2-HBP within 48 h and was reasonably tolerant against the inhibitory effect of 2-HBP (retained 70% of growth at 0.5 mM 2-HBP). The isolated biocatalyst desulfurized/degraded 100% of 0.2 mM of 4-methyl DBT, 2,8-dimethyl DBT, BT and 3-methyl BT within 108 h. The capabilities to survive and desulfurize a broad range of thiophenic sulfur containing substrates as well as less inhibition by the 2-HBP suggest that HS126-4N could be a potential candidate for improved biodesulfurization/organic sulfur removal from fossil fuels.

Biodesulfurization of Petroleum Distillates—Current Status, Opportunities and Future Challenges

Sulfur oxide (SO2) and hydrogen sulfide (H2S) are considered as one of the major air pollutants in the world today. In addition, high sulfur levels in petroleum distillates can promote the deactivation of catalysts through poisoning in fluidized catalytic cracking (FCC) during hydrocracking of the heavy distillates to lighter ones. The presence of high sulfur-containing compounds in the process streams could cause corrosion of piping and fittings and equipment, thereby damaging the pipelines and leading to air emissions of sulfur-containing compounds, which are undesirable for mankind and his environment. In many cases, a large quantity of SOx is released into the atmosphere when petroleum distillates that contain substantial amount of sulphur-containing compounds are used as fuel and combust. In this article, a short overview of different desulfurization methods that are employed to remove sulfur from petroleum distillates is provided. In particular, the review concentrates on biodesulfurization technique. In addition, this article intends to provide its readers current status of biodesulfurization (BDS). It critically analyses the trend in the development of the technology to showcase its strength and weakness that could pave a way for future opportunities. Approaches that are suitable to remediate sulfur-contaminated environment are discussed as well. Lastly, speculations on future directions or opportunities that require exploration are provided as a way of provoking the thoughts of researchers in this field.

Metabolic and process engineering for biodesulfurization in Gram-negative bacteria

Microbial desulfurization or biodesulfurization (BDS) is an attractive low-cost and environmentally friendly complementary technology to the hydrotreating chemical process based on the potential of certain bacteria to specifically remove sulfur from S-heterocyclic compounds of crude fuels that are recalcitrant to the chemical treatments. The 4S or Dsz sulfur specific pathway for dibenzothiophene (DBT) and alkyl-substituted DBTs, widely used as model S-heterocyclic compounds, has been extensively studied at the physiological, biochemical and genetic levels mainly in Gram-positive bacteria. Nevertheless, several Gram-negative bacteria have been also used in BDS because they are endowed with some properties, e.g., broad metabolic versatility and easy genetic and genomic manipulation, that make them suitable chassis for systems metabolic engineering strategies. A high number of recombinant bacteria, many of which are Pseudomonas strains, have been constructed to overcome the major bottlenecks of the desulfurization process, i.e., expression of the dsz operon, activity of the Dsz enzymes, retro-inhibition of the Dsz pathway, availability of reducing power, uptake-secretion of substrate and intermediates, tolerance to organic solvents and metals, and other host-specific limitations. However, to attain a BDS process with industrial applicability, it is necessary to apply all the knowledge and advances achieved at the genetic and metabolic levels to the process engineering level, i.e., kinetic modelling, scale-up of biphasic systems, enhancing mass transfer rates, biocatalyst separation, etc. The production of high-added value products derived from the organosulfur material present in oil can be regarded also as an economically viable process that has barely begun to be explored.

Crystal structures of TdsC, a dibenzothiophene monooxygenase from the thermophile Paenibacillus sp. A11-2, reveal potential for expanding its substrate selectivity

Sulfur compounds in fossil fuels are a major source of environmental pollution, and microbial desulfurization has emerged as a promising technology for removing sulfur under mild conditions. The enzyme TdsC from the thermophile Paenibacillus sp. A11-2 is a two-component flavin-dependent monooxygenase that catalyzes the oxygenation of dibenzothiophene (DBT) to its sulfoxide (DBTO) and sulfone (DBTO₂) during microbial desulfurization. The crystal structures of the apo and flavin mononucleotide (FMN)-bound forms of DszC, an ortholog of TdsC, were previously determined, although the structure of the ternary substrate-FMN-enzyme complex remains unknown. Herein, we report the crystal structures of the DBT-FMN-TdsC and DBTO-FMN-TdsC complexes. These ternary structures revealed many hydrophobic and hydrogen-bonding interactions with the substrate, and the position of the substrate could reasonably explain the two-step oxygenation of DBT by TdsC. We also determined the crystal structure of the indole-bound enzyme because TdsC, but not DszC, can also oxidize indole, and we observed that indole binding did not induce global conformational changes in TdsC with or without bound FMN. We also found that the two loop regions close to the FMN-binding site are disordered in apo-TdsC and become structured upon FMN binding. Alanine substitutions of Tyr-93 and His-388, which are located close to the substrate and FMN bound to TdsC, significantly decreased benzothiophene oxygenation activity, suggesting their involvement in supplying protons to the active site. Interestingly, these substitutions increased DBT oxygenation activity by TdsC, indicating that expanding the substrate-binding site can increase the oxygenation activity of TdsC on larger sulfur-containing substrates, a property that should prove useful for future microbial desulfurization applications.

Adsorptive Desulfurization of Model Gasoline by Using Different Zn Sources Exchanged NaY Zeolites

A series of Zn-modified NaY zeolites were prepared by the liquid-phase ion-exchange method with different Zn sources, including Zn(NO₃)₂, Zn(Ac)₂ and ZnSO₄. The samples were tested as adsorbents for removing an organic sulfur compound from a model gasoline fuel containing 1000 ppmw sulfur. Zn(Ac)₂-Y exhibited the best performance for the desulfurization of gasoline at ambient conditions. Combined with the adsorbents’ characterization results, the higher adsorption capacity of Zn(Ac)₂-Y is associated with a higher ion-exchange degree. Further, the results demonstrated that the addition of 5 wt % toluene or 1-hexene to the diluted thiophene (TP) solution in cyclohexane caused a large decrease in the removal of TP from the model gasoline fuel. This provides evidence about the competition through the π-complexation between TP and toluene for adsorption on the active sites. The acid-catalyzed alkylation by 1-hexene of TP and the generated complex mixture of bulky alkylthiophenes would adsorb on the surface active sites of the adsorbent and block the pores. The regenerated Zn(Ac)₂-Y adsorbent afforded 84.42% and 66.10% of the initial adsorption capacity after the first two regeneration cycles.

DBT desulfurization by decorating Rhodococcus erythropolis IGTS8 using magnetic Fe3O4 nanoparticles in a bioreactor

Today, crude oil is an important source of energy and environmental contamination due to the continued use of petroleum products is a matter or urgent concern. In this work, two technological platforms, namely, the use of a robust desulfurizing bacteria and the use of nanotechnology to decorate the surface of the bacteria with nanoparticles (NP), were combined to enhance biodesulfurization (BDS). BDS is an ecologically friendly method for desulfurizing petroleum products while avoiding damage to the hydrocarbons due to the high temperatures normally associated with physical desulfurization methods. First, a bacterium known to be a good organism for desulfurization (Rhodococcus erythropolis IGTS8) was employed in cell culture to remove a recalcitrant sulfur molecule from a common sulfur-containing compound found in crude petroleum products (dibenzothiophene). 2-Hydroxybiphenyl (2-HBP) produced as a consequence of the BDS of dibenzothiophene was determined using Gibbs' assay. The synthesized NP were characterized by field emission scanning electron microscope, transmission electron microscopy, Fourier transform infrared spectroscopy, X-ray diffraction spectroscopy, and vibrating sample magnetometer. The field emission scanning electron microscope and transmission electron microscopy images showed the size of the NP is 7-8 nm. The decorated cells had a long lag phase, but the growth continued until 148 h (at OD₆₀₀ = 3.408) while the noncoated bacteria grow until 96 h before entering the stationary phase at OD₆₀₀ = 2.547. Gibbs' assay results showed that production of 2-HBP by decorated cells was 0.210 mM at t = 148 h, while 2-HBP production by nondecorated cells was 0.182 mM at t = 96 h. Finally, the experiments were repeated in a fermenter.

Simultaneously saccharification and fermentation approach as a tool for enhanced fossil fuels biodesulfurization

Biodesulfurization can be a complementary technology to the hydrodesulfurization, the commonly physical-chemical process used for sulfur removal from crude oil. The desulfurizing bacterium Gordonia alkanivorans strain 1B as a fructophilic microorganism requires fructose as C-source. In this context, the main goal of this work was the optimization of a simultaneous saccharification and fermentation (SSF) approach using the Zygosaccharomyces bailii strain Talf1 crude enzymes with invertase activity and sucrose as a cheaper fructose-rich commercial C-source (50% fructose) towards dibenzothiophene (DBT) desulfurization by strain 1B. The determination of optimal conditions, for both sucrose hydrolysis and DBT desulfurization was carried out through two sequential experimental uniform designs according to the Doehlert distribution for two factors: pH (5.5-7.5) and temperature (28-38 °C), with the enzyme load of 1.16 U/g/L; and enzyme load (0-4 U/g/L) and temperature (28-38 °C), with pH at 7.5. Based on 2-hydroxybiphenyl production, the analysis of the response surfaces obtained pointed out for pH 7.5, 32 °C and 1.8 U/g/L as optimal conditions. Further optimized SSF of sucrose during the DBT desulfurization process permitted to attain a 4-fold enhanced biodesulfurization. This study opens a new focus of research through the exploitation of sustainable low cost sucrose-rich feedstocks towards a more economical viable bioprocess scale-up.

A comparison of the response of twoBurkholderia fungorumstrains grown as planktonic cells versus biofilm to dibenzothiophene and select polycyclic aromatic hydrocarbons

In natural environments, bacteria often exist in close association with surfaces and interfaces by establishing biofilms. Here, we report on the ability of Burkholderia fungorum strains DBT1 and 95 to survive in high concentrations of hydrocarbons, and we compare their growth as a biofilm vs. planktonic cells. The 2 compounds tested were dibenzothiophene (DBT) and a mixture of naphthalene, phenanthrene, and pyrene (5:2:1) as representative compounds of thiophenes and polycyclic aromatic hydrocarbons (PAHs), respectively. The results showed that both strains were able to degrade DBT and to survive in the presence of up to a 2000 mg·L−1concentration of this compound both as a biofilm and as free-living cells. Moreover, B. fungorum DBT1 showed reduced tolerance towards the mixed PAHs (2000 mg·L−1naphthalene, 800 mg·L−1phenanthrene, and 400 mg·L−1pyrene) both as a biofilm and as free-living cells. Conversely, biofilms of B. fungorum 95 enhanced resistance against these toxic compounds compared with planktonic cells (P < 0.05). Visual observation through confocal laser scanning microscopy showed that exposure of biofilms to DBT and PAHs altered their structure: high concentrations of DBT triggered an aggregation of biofilm cells. These findings provide new perspectives on the effectiveness of using DBT-degrading bacterial strains in bioremediation of hydrocarbon-contaminated sites.

Proteomics and Metabolomics Analyses to Elucidate the Desulfurization Pathway of Chelatococcus sp

Desulfurization of dibenzothiophene (DBT) and alkylated DBT derivatives present in transport fuel through specific cleavage of carbon-sulfur (C-S) bonds by a newly isolated bacterium Chelatococcus sp. is reported for the first time. Gas chromatography-mass spectrometry (GC-MS) analysis of the products of DBT degradation by Chelatococcus sp. showed the transient formation of 2-hydroxybiphenyl (2-HBP) which was subsequently converted to 2-methoxybiphenyl (2-MBP) by methylation at the hydroxyl group of 2-HBP. The relative ratio of 2-HBP and 2-MBP formed after 96 h of bacterial growth was determined at 4:1 suggesting partial conversion of 2-HBP or rapid degradation of 2-MBP. Nevertheless, the enzyme involved in this conversion process remains to be identified. This production of 2-MBP rather than 2-HBP from DBT desulfurization has a significant metabolic advantage for enhancing the growth and sulfur utilization from DBT by Chelatococcus sp. and it also reduces the environmental pollution by 2-HBP. Furthermore, desulfurization of DBT derivatives such as 4-M-DBT and 4, 6-DM-DBT by Chelatococcus sp. resulted in formation of 2-hydroxy-3-methyl-biphenyl and 2-hydroxy -3, 3/- dimethyl-biphenyl, respectively as end product. The GC and X-ray fluorescence studies revealed that Chelatococcus sp. after 24 h of treatment at 37°C reduced the total sulfur content of diesel fuel by 12% by per gram resting cells, without compromising the quality of fuel. The LC-MS/MS analysis of tryptic digested intracellular proteins of Chelatococcus sp. when grown in DBT demonstrated the biosynthesis of 4S pathway desulfurizing enzymes viz. monoxygenases (DszC, DszA), desulfinase (DszB), and an NADH-dependent flavin reductase (DszD). Besides, several other intracellular proteins of Chelatococcus sp. having diverse biological functions were also identified by LC-MS/MS analysis. Many of these enzymes are directly involved with desulfurization process whereas the other enzymes/proteins support growth of bacteria at an expense of DBT. These combined results suggest that Chelatococcus sp. prefers sulfur-specific extended 4S pathway for deep-desulphurization which may have an advantage for its intended future application as a promising biodesulfurizing agent.

Biocatalytic Desulfurization Capabilities of a Mixed Culture during Non-Destructive Utilization of Recalcitrant Organosulfur Compounds

We investigated the biodesulfurization potential of a mixed culture AK6 enriched from petroleum hydrocarbons-polluted soil with dibenzothiophene (DBT) as a sulfur source. In addition to DBT, AK6 utilized the following compounds as sulfur sources: 4-methyldibenzothiophene (4-MDBT), benzothiophene (BT), and 4,6- dimethyldibenzothiophene (4,6-DM-DBT). None of these compounds supported the growth of AK6 as the sole carbon and sulfur source. AK6 could not grow on dibenzylsulfide (DBS) as a sulfur source. The AK6 community structure changed according to the provided sulfur source. The major DGGE bands represented members of the genera Sphingobacterium, Klebsiella, Pseudomonas, Stenotrophomonas, Arthrobacter, Mycobacterium, and Rhodococcus. Sphingobacterium sp. and Pseudomonas sp. were abundant across all cultures utilizing any of the tested thiophenic S-compounds. Mycobacterium/Rhodococcus spp. were restricted to the 4-MDBT culture. The 4-MDBT culture had the highest species richness and diversity. Biodesulfurization of DBT by resting cells of AK6 produced 2-hydroxybiphenyl (2-HBP) in addition to trace amounts of phenylacetate. AK6 transformed DBT to 2-hydroxybiphenyl with a specific activity of 9 ± 0.6 μM 2-HBP g dry cell weight⁻¹ h⁻¹. PCR confirmed the presence in the AK6 community of the sulfur-specific (4S) pathway genes dszB and dszC. Mixed cultures hold a better potential than axenic ones for the development of a biodesulfurization technology.

Engineering synthetic bacterial consortia for enhanced desulfurization and revalorization of oil sulfur compounds

The 4S pathway is the most studied bioprocess for the removal of the recalcitrant sulfur of aromatic heterocycles present in fuels. It consists of three sequential functional units, encoded by the dszABCD genes, through which the model compound dibenzothiophene (DBT) is transformed into the sulfur-free 2-hydroxybiphenyl (2HBP) molecule. In this work, a set of synthetic dsz cassettes were implanted in Pseudomonas putida KT2440, a model bacterial "chassis" for metabolic engineering studies. The complete dszB1A1C1-D1 cassette behaved as an attractive alternative - to the previously constructed recombinant dsz cassettes - for the conversion of DBT into 2HBP. Refactoring the 4S pathway by the use of synthetic dsz modules encoding individual 4S pathway reactions revealed unanticipated traits, e.g., the 4S intermediate 2HBP-sulfinate (HBPS) behaves as an inhibitor of the Dsz monooxygenases, and once secreted from the cells it cannot be further taken up. That issue should be addressed for the rational design of more efficient biocatalysts for DBT bioconversions. In this sense, the construction of synthetic bacterial consortia to compartmentalize the 4S pathway into different cell factories for individual optimization was shown to enhance the conversion of DBT into 2HBP, overcome the inhibition of the Dsz enzymes by the 4S intermediates, and enable efficient production of unattainable high added value intermediates, e.g., HBPS, that are difficult to obtain using the current monocultures.

Advances in the Reduction of the Costs Inherent to Fossil Fuels' Biodesulfurization towards Its Potential Industrial Application

Biodesulfurization (BDS) process consists on the use of microorganisms for the removal of sulfur from fossil fuels. Through BDS it is possible to treat most of the organosulfur compounds recalcitrant to the conventional hydrodesulfurization (HDS), the petroleum industry's solution, at mild operating conditions, without the need for molecular hydrogen or metal catalysts. This technique results in lower emissions, smaller residue production and less energy consumption, which makes BDS an eco-friendly process that can complement HDS making it more efficient. BDS has been extensively studied and much is already known about the process. Clearly, BDS presents advantages as a complementary technique to HDS; however its commercial use has been delayed by several limitations both upstream and downstream the process. This study will comprehensively review and discuss key issues, like reduction of the BDS costs, advances and/or challenges for a competitive BDS towards its potential industrial application aiming ultra low sulfur fuels.

Enhancement of dibenzothiophene biodesulfurization by weakening the feedback inhibition effects based on a systematic understanding of the biodesulfurization mechanism by Gordonia sp. through the potential “4S” pathway

Gordonia sp. JDZX13 (source: industrial petroleum soil) shows good potential for dibenzothiophene (DBT) biodesulfurization.

Ability of Gordonia alkanivorans strain 1B for high added value carotenoids production

Currently, carotenoids are valuable bioactive molecules for several industries, such as chemical, pharmaceutical, food and cosmetics, due to their multiple benefits as natural colorants, antioxidants and vitamin precursors.