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Viteri G, Rodríguez A, Aranda A, Díaz de Mera Y, Rodríguez D, Rodriguez-Fariñas N, Valiente N, Belinchón G, Seseña S. Air quality in olive mill wastewater evaporation ponds: Assessment of chemical and microbiological pollutants. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2024; 363:125222. [PMID: 39486675 DOI: 10.1016/j.envpol.2024.125222] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2024] [Revised: 10/24/2024] [Accepted: 10/29/2024] [Indexed: 11/04/2024]
Abstract
Olive mill wastewater (OMW), a pollutant residue from the olive oil industry, is typically stored as sludge in evaporation ponds. This study examines the long-term emissions of OMW sludge and its impact on local air quality, analysing chemical pollutants like PM2.5, volatile organic compounds (VOCs), and trace elements (TEs), along with microbial communities (bacteria and fungi). The study also considered meteorological conditions and back-trajectories to identify sources of these elements. The ecological risk index (ERI) was found to be over 720 due to high Hg levels in the sludge (19.0 ± 0.9 ng/g) and air (0.28 ± 0.13 ng/m³), indicating a significant ecological threat. VOCs, particularly oxygenated compounds such as aldehydes and phenol, contributed to the area's strong odour. Meteorological conditions and Sahara dust intrusions influenced bioaerosol loads and seasonal bacterial diversity, whose composition is closely associated with VOC concentrations. The results could contribute to a better understanding of the environmental dynamics in the OMW sludge evaporation ponds, and they could also assist in formulating effective management strategies.
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Affiliation(s)
- G Viteri
- Faculty of Chemical Sciences and Technologies, Avenida Camilo José Cela S/n, 13071, Ciudad Real, University of Castilla-La Mancha (UCLM), Spain
| | - A Rodríguez
- Faculty of Environmental Sciences and Biochemistry, Environmental Sciences Institute (ICAM), Avda Carlos III s/n, 45071, Toledo, UCLM, Spain.
| | - A Aranda
- Faculty of Chemical Sciences and Technologies, Avenida Camilo José Cela S/n, 13071, Ciudad Real, University of Castilla-La Mancha (UCLM), Spain
| | - Y Díaz de Mera
- Faculty of Chemical Sciences and Technologies, Avenida Camilo José Cela S/n, 13071, Ciudad Real, University of Castilla-La Mancha (UCLM), Spain
| | - D Rodríguez
- Faculty of Environmental Sciences and Biochemistry, Environmental Sciences Institute (ICAM), Avda Carlos III s/n, 45071, Toledo, UCLM, Spain
| | - N Rodriguez-Fariñas
- Faculty of Environmental Sciences and Biochemistry, Environmental Sciences Institute (ICAM), Avda Carlos III s/n, 45071, Toledo, UCLM, Spain
| | - N Valiente
- Department of Science and Agroforestry Technology and Genetics, Campus Universitario s/n, 02071, Albacete, UCLM, Spain
| | - G Belinchón
- Department of Science and Agroforestry Technology and Genetics, Campus Universitario s/n, 02071, Albacete, UCLM, Spain
| | - S Seseña
- Faculty of Environmental Sciences and Biochemistry, Environmental Sciences Institute (ICAM), Avda Carlos III s/n, 45071, Toledo, UCLM, Spain
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2
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Thi Mo L, Irina P, Natalia S, Irina N, Lenar A, Andrey F, Ekaterina A, Sergey A, Olga P. Hydrocarbons Biodegradation by Rhodococcus: Assimilation of Hexadecane in Different Aggregate States. Microorganisms 2022; 10:microorganisms10081594. [PMID: 36014013 PMCID: PMC9416576 DOI: 10.3390/microorganisms10081594] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Revised: 08/03/2022] [Accepted: 08/05/2022] [Indexed: 11/16/2022] Open
Abstract
The aim of our study was to reveal the peculiarities of the adaptation of rhodococci to hydrophobic hydrocarbon degradation at low temperatures when the substrate was in solid states. The ability of actinobacteria Rhodococcus erythropolis (strains X5 and S67) to degrade hexadecane at 10 °C (solid hydrophobic substrate) and 26 °C (liquid hydrophobic substrate) is described. Despite the solid state of the hydrophobic substrate at 10 °C, bacteria demonstrate a high level of its degradation (30–40%) within 18 days. For the first time, we show that specialized cellular structures are formed during the degradation of solid hexadecane by Rhodococcus at low temperatures: intracellular multimembrane structures and surface vesicles connected to the cell by fibers. The formation of specialized cellular structures when Rhodococcus bacteria are grown on solid hexadecane is an important adaptive trait, thereby contributing to the enlargement of a contact area between membrane-bound enzymes and a hydrophobic substrate.
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Affiliation(s)
- Luong Thi Mo
- Department of Biotechnology, Tula State University, Prospekt Lenina 92, 300012 Tula, Russia
- Russian-Vietnamese Tropical Research and Technology Center (Southern Branch), No. 1–3, 3 Thang 2 (the 3rd of February) Street, 11th Ward, District 10, Ho Chi Minh City 740500, Vietnam
| | - Puntus Irina
- Laboratory of Plasmid Biology, Skryabin Institute of Biochemistry and Physiology of Microorganisms of Russian Academy of Sciences—A Separate Subdivision of Federal State Budget Institution of Science, Federal Research Centre, Pushchino Scientific Center of Biological Research of Russian Academy of Sciences, Prospekt Nauki 5, 142290 Pushchino, Russia
| | - Suzina Natalia
- Laboratory of Microbial Cytology, Skryabin Institute of Biochemistry and Physiology of Microorganisms of Russian Academy of Sciences—A Separate Subdivision of Federal State Budget Institution of Science, Federal Research Centre, Pushchino Scientific Center of Biological Research of Russian Academy of Sciences, Prospekt Nauki 5, 142290 Pushchino, Russia
| | - Nechaeva Irina
- Laboratory of Ecological and Medical Biotechnology, Tula State University, Friedrich Engels Street 157, 300012 Tula, Russia
| | - Akhmetov Lenar
- Laboratory of Plasmid Biology, Skryabin Institute of Biochemistry and Physiology of Microorganisms of Russian Academy of Sciences—A Separate Subdivision of Federal State Budget Institution of Science, Federal Research Centre, Pushchino Scientific Center of Biological Research of Russian Academy of Sciences, Prospekt Nauki 5, 142290 Pushchino, Russia
| | - Filonov Andrey
- Laboratory of Plasmid Biology, Skryabin Institute of Biochemistry and Physiology of Microorganisms of Russian Academy of Sciences—A Separate Subdivision of Federal State Budget Institution of Science, Federal Research Centre, Pushchino Scientific Center of Biological Research of Russian Academy of Sciences, Prospekt Nauki 5, 142290 Pushchino, Russia
| | - Akatova Ekaterina
- Laboratory of Ecological and Medical Biotechnology, Tula State University, Friedrich Engels Street 157, 300012 Tula, Russia
| | - Alferov Sergey
- Laboratory of Ecological and Medical Biotechnology, Tula State University, Friedrich Engels Street 157, 300012 Tula, Russia
| | - Ponamoreva Olga
- Department of Biotechnology, Tula State University, Prospekt Lenina 92, 300012 Tula, Russia
- Correspondence:
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3
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Martins VR, Freitas CJB, Castro AR, Silva RM, Gudiña EJ, Sequeira JC, Salvador AF, Pereira MA, Cavaleiro AJ. Corksorb Enhances Alkane Degradation by Hydrocarbonoclastic Bacteria. Front Microbiol 2021; 12:618270. [PMID: 34489874 PMCID: PMC8417381 DOI: 10.3389/fmicb.2021.618270] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2020] [Accepted: 07/26/2021] [Indexed: 11/13/2022] Open
Abstract
Biosorbent materials are effective in the removal of spilled oil from water, but their effect on hydrocarbonoclastic bacteria is not known. Here, we show that corksorb, a cork-based biosorbent, enhances growth and alkane degradation by Rhodococcus opacus B4 (Ro) and Alcanivorax borkumensis SK2 (Ab). Ro and Ab degraded 96 ± 1% and 72 ± 2%, respectively, of a mixture of n-alkanes (2 g L-1) in the presence of corksorb. These values represent an increase of 6 and 24%, respectively, relative to the assays without corksorb. The biosorbent also increased the growth of Ab by 51%. However, no significant changes were detected in the expression of genes involved in alkane uptake and degradation in the presence of corksorb relative to the control without the biosorbent. Nevertheless, transcriptomics analysis revealed an increased expression of rRNA and tRNA coding genes, which confirms the higher metabolic activity of Ab in the presence of corksorb. The effect of corksorb is not related to the release of soluble stimulating compounds, but rather to the presence of the biosorbent, which was shown to be essential. Indeed, scanning electron microscopy images and downregulation of pili formation coding genes, which are involved in cell mobility, suggest that cell attachment on corksorb is a determinant for the improved activity. Furthermore, the existence of native alkane-degrading bacteria in corksorb was revealed, which may assist in situ bioremediation. Hence, the use of corksorb in marine oil spills may induce a combined effect of sorption and stimulated biodegradation, with high potential for enhancing in situ bioremediation processes.
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Affiliation(s)
| | | | | | | | | | | | | | | | - Ana J. Cavaleiro
- CEB – Centre of Biological Engineering, University of Minho, Braga, Portugal
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4
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Tao W, Lin J, Wang W, Huang H, Li S. Biodegradation of aliphatic and polycyclic aromatic hydrocarbons by the thermophilic bioemulsifier-producing Aeribacillus pallidus strain SL-1. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2020; 189:109994. [PMID: 31787385 DOI: 10.1016/j.ecoenv.2019.109994] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2019] [Revised: 11/18/2019] [Accepted: 11/20/2019] [Indexed: 05/26/2023]
Abstract
The utilization of thermophilic hydrocarbon-degrading microorganisms is a suitable strategy for improving biodegradation of petroleum hydrocarbons and PAHs, as well as enhancing oil recovery from high-temperature reservoirs. In this study, the thermophilic strain Aeribacillus pallidus SL-1 was evaluated for the biodegradation of crude oil and PAHs at 60 °C. Strain SL-1 was found to preferentially degrade short-chain n-alkanes (<C17) and aromatic hydrocarbons from crude oil. The highest degradation rate of 84% was obtained with 1000 mg/l naphthalene as sole carbon source. Additionally, the strain was able to degrade 80% of phenanthrene (200 mg/l) and 50% of pyrene (50 mg/l) within 5 days at 60 °C. The SL-bioemulsifier produced by strain SL-1 was identified as a glycoprotein with stable emulsifying activity over a wide range of environmental conditions. Chemical composition studies exhibited that the SL-bioemulsifier consisted of polysaccharides (65.6%) and proteins (13.1%), among them, proteins were the major emulsifying functional substrates. Furthermore, the SL-bioemulsifier was able to enhance the solubility of PAHs. Thus, the bioemulsifier-producing strain SL-1 has great potential for applications in high-temperature bioremediation.
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Affiliation(s)
- Weiyi Tao
- College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing, 211816, PR China
| | - Junzhang Lin
- Oil Production Research Institute, Shengli Oil Field Ltd. Co. SinoPEC, Dongying, China
| | - Weidong Wang
- Oil Production Research Institute, Shengli Oil Field Ltd. Co. SinoPEC, Dongying, China
| | - He Huang
- School of Pharmaceutical Sciences, Nanjing Tech University, Nanjing, 211816, PR China
| | - Shuang Li
- College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing, 211816, PR China.
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5
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Immobilization of P. stutzeri on Activated Carbons for Degradation of Hydrocarbons from Oil-in-Saltwater Emulsions. NANOMATERIALS 2019; 9:nano9040500. [PMID: 30939741 PMCID: PMC6523707 DOI: 10.3390/nano9040500] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/21/2019] [Revised: 03/14/2019] [Accepted: 03/23/2019] [Indexed: 12/17/2022]
Abstract
Production water is the largest byproduct of the oil industry and must be treated before disposal, either by reinjection or shedding processes, with the purpose of eliminating emulsified crude oil and avoiding the operational and toxic problems associated with it. The objective of this work was to immobilize a hydrocarbon-degrading strain on activated carbons, to evaluate the biocomplex’s capacity for catalyzing hydrocarbons from Oil in Brine emulsions (O/W) simulating produced waters. Activated carbons were prepared and their chemical and porous properties were estimated by XPS, pHPZC and SEM, N2 adsorption, and mercury porosimetry. Biomaterials were synthesized and hydrocarbon removal tests were performed. The basic and neutral carbons immobilized Pseudomonas stutzeri by physisorption in the macroporous space and electrostatic interactions (108–109 UFC∙g−1), while acid materials inhibited bacterial growth. Removal of aromatic hydrocarbons was more efficient using materials (60%–93%) and biomaterials (16%–84%) than using free P. stutzeri (1%–47%), and the removal efficiencies of crude oil were 22%, 48% and 37% for P. stutzeri and two biomaterials, respectively. The presence of minor hydrocarbons only when P. stutzeri was present confirmed the biotransformation process.
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6
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Degradation of chlorotoluenes and chlorobenzenes by the dual-species biofilm of Comamonas testosteroni strain KT5 and Bacillus subtilis strain DKT. ANN MICROBIOL 2019. [DOI: 10.1007/s13213-018-1415-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022] Open
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7
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Kuyukina MS, Ivshina IB. Production of Trehalolipid Biosurfactants by Rhodococcus. BIOLOGY OF RHODOCOCCUS 2019. [DOI: 10.1007/978-3-030-11461-9_10] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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8
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Cold survival strategies for bacteria, recent advancement and potential industrial applications. Arch Microbiol 2018; 201:1-16. [PMID: 30478730 DOI: 10.1007/s00203-018-1602-3] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2018] [Revised: 11/04/2018] [Accepted: 11/24/2018] [Indexed: 12/12/2022]
Abstract
Microorganisms have evolved themselves to thrive under various extreme environmental conditions such as extremely high or low temperature, alkalinity, and salinity. These microorganisms adapted several metabolic processes to survive and reproduce efficiently under such extreme environments. As the major proportion of earth is covered with the cold environment and is exploited by human beings, these sites are not pristine anymore. Human interventions are a great reason for disturbing the natural biogeochemical cycles in these regions. The survival strategies of these organisms have shown great potential for helping us to restore these pristine sites and the use of isolated cold-adapted enzymes from these organisms has also revolutionized various industrial products. This review gives you the insight of psychrophilic enzyme adaptations and their industrial applications.
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9
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Park C, Park W. Survival and Energy Producing Strategies of Alkane Degraders Under Extreme Conditions and Their Biotechnological Potential. Front Microbiol 2018; 9:1081. [PMID: 29910779 PMCID: PMC5992423 DOI: 10.3389/fmicb.2018.01081] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2017] [Accepted: 05/07/2018] [Indexed: 11/17/2022] Open
Abstract
Many petroleum-polluted areas are considered as extreme environments because of co-occurrence of low and high temperatures, high salt, and acidic and anaerobic conditions. Alkanes, which are major constituents of crude oils, can be degraded under extreme conditions, both aerobically and anaerobically by bacteria and archaea of different phyla. Alkane degraders possess exclusive metabolic pathways and survival strategies, which involve the use of protein and RNA chaperones, compatible solutes, biosurfactants, and exopolysaccharide production for self-protection during harsh environmental conditions such as oxidative and osmotic stress, and ionic nutrient-shortage. Recent findings suggest that the thermophilic sulfate-reducing archaeon Archaeoglobus fulgidus uses a novel alkylsuccinate synthase for long-chain alkane degradation, and the thermophilic Candidatus Syntrophoarchaeum butanivorans anaerobically oxidizes butane via alkyl-coenzyme M formation. In addition, gene expression data suggest that extremophiles produce energy via the glyoxylate shunt and the Pta-AckA pathway when grown on a diverse range of alkanes under stress conditions. Alkane degraders possess biotechnological potential for bioremediation because of their unusual characteristics. This review will provide genomic and molecular insights on alkane degraders under extreme conditions.
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Affiliation(s)
- Chulwoo Park
- Laboratory of Molecular Environmental Microbiology, Department of Environmental Science and Ecological Engineering, Korea University, Seoul, South Korea
| | - Woojun Park
- Laboratory of Molecular Environmental Microbiology, Department of Environmental Science and Ecological Engineering, Korea University, Seoul, South Korea
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10
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Characterization of bacterial composition and diversity in a long-term petroleum contaminated soil and isolation of high-efficiency alkane-degrading strains using an improved medium. World J Microbiol Biotechnol 2018; 34:34. [DOI: 10.1007/s11274-018-2417-8] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2017] [Accepted: 01/27/2018] [Indexed: 10/18/2022]
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11
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Characterization of biosurfactants produced by the oil-degrading bacterium Rhodococcus erythropolis S67 at low temperature. World J Microbiol Biotechnol 2018; 34:20. [DOI: 10.1007/s11274-017-2401-8] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2017] [Accepted: 12/13/2017] [Indexed: 10/18/2022]
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12
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Hvidsten I, Mjøs SA, Bødtker G, Barth T. Lipids of Dietzia sp. A14101. Part II: A study of the dynamics of the release of surface active compounds by Dietzia sp. A14101 into the medium. Chem Phys Lipids 2017; 208:31-42. [PMID: 28837792 DOI: 10.1016/j.chemphyslip.2017.08.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2017] [Revised: 08/06/2017] [Accepted: 08/14/2017] [Indexed: 11/26/2022]
Abstract
Dietzia sp. A14101 isolated from an oil reservoir model column was found to induce a strong decrease of the interfacial tension (IFT) in hydrocarbon-water mixtures in the presence of the intact bacterial cells (Kowalewski et al., 2005). The strain was shown to be able to degrade a wide range of hydrocarbon substrates (Bødtker et al., 2009). Further studies showed that the surface-active compounds tentatively identified as glycolipids were produced by Dietzia sp. A14101 on non- and water-immiscible -hydrocarbon substrates, Part I (Hvidsten et al., 2017). The results suggested that biosurfactant (BS) was a mixture of several isomers. The study presented here is aimed to investigate whether BS are secreted into the aqueous medium, and if so, then at which phase of the culture growth and in which amounts - the dynamics of the BS release in incubations on water-immiscible hydrocarbons. Two methods of BS extraction from the medium were attempted and compared: a liquid-liquid extraction (LLE) and precipitation by acid. For qualitative and semi-quantitative assessment, gas chromatography-mass spectrometry (GC/MS), thin-layer chromatography (TLC), liquid chromatography-mass spectrometry (LC-MS), surface tension measurements (SFT), emulsification (E24) and oil-spreading tests were employed. The results indicated that BS only partially were secreted into the medium. Detectable amounts of glycolipids in media were first identified during the exponential growth phase. However, only a slight decrease of SFT was observed in the cell-free medium. The emulsification index values of the sampled material were lower than those reported for related strains. The results suggested that most of the BS produced by Dietzia sp. A14101 remains cell-bound during the culture development in a batch mode and only a narrow range of the BS isomers can be detected in small amounts in media.
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Affiliation(s)
- Ina Hvidsten
- Department of Chemistry, University of Bergen, Allégaten 41, 5007 Bergen, Norway.
| | - Svein Are Mjøs
- Department of Chemistry, University of Bergen, Allégaten 41, 5007 Bergen, Norway
| | - Gunhild Bødtker
- Uni Research CIPR, Uni Research, P.O. Box 7810, 5020 Bergen, Norway
| | - Tanja Barth
- Department of Chemistry, University of Bergen, Allégaten 41, 5007 Bergen, Norway
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Mikolasch A, Omirbekova A, Schumann P, Reinhard A, Sheikhany H, Berzhanova R, Mukasheva T, Schauer F. Enrichment of aliphatic, alicyclic and aromatic acids by oil-degrading bacteria isolated from the rhizosphere of plants growing in oil-contaminated soil from Kazakhstan. Appl Microbiol Biotechnol 2015; 99:4071-84. [PMID: 25592733 DOI: 10.1007/s00253-014-6320-4] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2014] [Revised: 12/09/2014] [Accepted: 12/12/2014] [Indexed: 10/24/2022]
Abstract
Three microbial strains were isolated from the rhizosphere of alfalfa (Medicago sativa), grass mixture (Festuca rubra, 75 %; Lolium perenne, 20 %; Poa pratensis, 10 %), and rape (Brassica napus) on the basis of their high capacity to use crude oil as the sole carbon and energy source. These isolates used an unusually wide spectrum of hydrocarbons as substrates (more than 80), including n-alkanes with chain lengths ranging from C12 to C32, monomethyl- and monoethyl-substituted alkanes (C12-C23), n-alkylcyclo alkanes with alkyl chain lengths from 4 to 18 carbon atoms, as well as substituted monoaromatic and diaromatic hydrocarbons. These three strains were identified as Gordonia rubripertincta and Rhodococcus sp. SBUG 1968. During their transformation of this wide range of hydrocarbon substrates, a very large number of aliphatic, alicyclic, and aromatic acids was detected, 44 of them were identified by GC/MS analyses, and 4 of them are described as metabolites for the first time. Inoculation of plant seeds with these highly potent bacteria had a beneficial effect on shoot and root development of plants which were grown on oil-contaminated sand.
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Affiliation(s)
- Annett Mikolasch
- Department of Applied Microbiology, Institute of Microbiology, University Greifswald, Friedrich-Ludwig-Jahn-Str. 15, 17487, Greifswald, Germany,
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15
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Chen WY, Wu JH, Chang JE. Pyrosequencing analysis reveals high population dynamics of the soil microcosm degrading octachlorodibenzofuran. Microbes Environ 2014; 29:393-400. [PMID: 25491754 PMCID: PMC4262363 DOI: 10.1264/jsme2.me14001] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
A deeper understanding of the microbial community structure is very important in bioremediation for polychlorinated dibenzo-p-dioxins/dibenzofurans (PCDD/Fs). However, this has been insufficiently addressed in previous studies. To obtain more information, we pyrosequenced the V4/V5 regions of the 16S rRNA genes of bacterial communities transited from polluted soil to batch microcosms that rapidly degraded high concentrations of octachlorodibenzofuran (OCDF). The analysis results contained an average of 11,842 reads per sample, providing the first detailed description of bacterial communities associated with PCDD/Fs. The community composition markedly changed to be concomitant with the degradation of OCDF, indicating that a distinctive population structure developed rapidly in the microcosm. Although oxygen gas was provided weekly to the microcosm, the growth of potential degraders, Sphingomonas, Pseudomonas, Rhodococcus, and Clostridium, was observed, but in consistently low quantities. While anaerobic Sedimentibacter initially emerged as an abundant pioneer, several aerobic participants, such as the genera Brevundimonas, Pseudoxanthomonas, and Lysobacter, exhibited a large increase in their 16S rRNA gene copies within the timeframe, which showed a temporal population dynamic, and indicated their collaborative contributions to the degradation of OCDF under hypoxic conditions. These results have provided a deeper insight into the microbial community structure and population dynamics of the OCDF-degrading microcosm.
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Affiliation(s)
- Wei-Yu Chen
- Department of Environmental Engineering, National Cheng Kung University
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16
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Zampolli J, Collina E, Lasagni M, Di Gennaro P. Biodegradation of variable-chain-length n-alkanes in Rhodococcus opacus R7 and the involvement of an alkane hydroxylase system in the metabolism. AMB Express 2014; 4:73. [PMID: 25401074 PMCID: PMC4230829 DOI: 10.1186/s13568-014-0073-4] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2014] [Accepted: 09/05/2014] [Indexed: 01/31/2023] Open
Abstract
Rhodococcus opacus R7 is a Gram-positive bacterium isolated from a polycyclic aromatic hydrocarbon contaminated soil for its versatile metabolism; indeed the strain is able to grow on naphthalene, o-xylene, and several long- and medium-chain n-alkanes. In this work we determined the degradation of n-alkanes in Rhodococcus opacus R7 in presence of n-dodecane (C12), n-hexadecane (C16), n-eicosane (C20), n-tetracosane (C24) and the metabolic pathway in presence of C12. The consumption rate of C12 was 88%, of C16 was 69%, of C20 was 51% and of C24 it was 78%. The decrement of the degradation rate seems to be correlated to the length of the aliphatic chain of these hydrocarbons. On the basis of the metabolic intermediates determined by the R7 growth on C12, our data indicated that R. opacus R7 metabolizes medium-chain n-alkanes by the primary alcohol formation. This represents a difference in comparison with other Rhodococcus strains, in which a mixture of the two alcohols was observed. By GC-MSD analysis we also identified the monocarboxylic acid, confirming the terminal oxidation. Moreover, the alkB gene cluster from R. opacus R7 was isolated and its involvement in the n-alkane degradation system was investigated by the cloning of this genomic region into a shuttle-vector E. coli-Rhodococcus to evaluate the alkane hydroxylase activity. Our results showed an increased biodegradation of C12 in the recombinant strain R. erythropolis AP (pTipQT1-alkR7) in comparison with the wild type strain R. erythropolis AP. These data supported the involvement of the alkB gene cluster in the n-alkane degradation in the R7 strain.
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17
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Yang HY, Jia RB, Chen B, Li L. Degradation of recalcitrant aliphatic and aromatic hydrocarbons by a dioxin-degrader Rhodococcus sp. strain p52. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2014; 21:11086-11093. [PMID: 24859700 DOI: 10.1007/s11356-014-3027-0] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/28/2013] [Accepted: 05/08/2014] [Indexed: 06/03/2023]
Abstract
This study investigates the ability of Rhodococcus sp. strain p52, a dioxin degrader, to biodegrade petroleum hydrocarbons. Strain p52 can use linear alkanes (tetradecane, tetracosane, and dotriacontane), branched alkane (pristane), and aromatic hydrocarbons (naphthalene and phenanthrene) as sole carbon and energy sources. Specifically, the strain removes 85.7 % of tetradecane within 48 h at a degradation rate of 3.8 mg h(-1) g(-1) dry cells, and 79.4 % of tetracosane, 66.4 % of dotriacontane, and 63.9 % of pristane within 9-11 days at degradation rates of 20.5, 14.7, and 20.3 mg day(-1) g(-1) dry cells, respectively. Moreover, strain p52 consumes 100 % naphthalene and 55.3 % phenanthrene within 9-11 days at respective degradation rates of 16 and 12.9 mg day(-1) g(-1) dry cells. Metabolites of the petroleum hydrocarbons by strain p52 were analyzed. Genes encoding alkane-hydroxylating enzymes, including cytochrome P450 (CYP450) enzyme (CYP185) and two alkane-1-monooxygenases, were amplified by polymerase chain reaction. The transcriptional activities of these genes in the presence of petroleum hydrocarbons were detected by reverse transcription-polymerase chain reaction. The results revealed potential of strain p52 to degrade petroleum hydrocarbons.
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Affiliation(s)
- Hai-Yan Yang
- Shandong Provincial Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, 27 ShandaNanlu, Jinan, 250100, China
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San Miguel A, Roy J, Gury J, Monier A, Coissac E, Ravanel P, Geremia RA, Raveton M. Effects of organochlorines on microbial diversity and community structure in Phragmites australis rhizosphere. Appl Microbiol Biotechnol 2014; 98:4257-66. [PMID: 24504457 DOI: 10.1007/s00253-014-5545-6] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2013] [Revised: 01/08/2014] [Accepted: 01/09/2014] [Indexed: 11/26/2022]
Abstract
This study investigated the impacts of an organochlorine (OC, γ-hexachlorocyclohexane and chlorobenzenes) mixture on microbial communities associated to Phragmites australis rhizosphere. Seventy-eight distinct colony morphotypes were isolated, cultivated and analysed by 16S rDNA sequence analysis. Toxicity tests confirmed sensitivity (e.g. Hevizibacter, Acidovorax) or tolerance (e.g. Bacillus, Aeromonas, Pseudomonas, Sphingomonas) of isolates. Rhizosphere analysis by pyrosequencing showed the microbial adaptation induced by OC exposure. Among the most abundant molecular operational taxonomic units, 80 % appeared to be tolerant (55 % opportunist, 25 % unaffected) and 20 % sensitive. P. australis rhizosphere exposed to OCs was dominated by phylotypes related to α-, β- and γ-Proteobacteria. Specific genera were identified which were previously described as chlorinated organic pollutant degraders: Sphingomonas sp., Pseudomonas sp., Devosia sp. and Sphingobium sp. P. australis could be suitable plants to maintain their rhizosphere active microbial population which can tolerate OCs and potentially improve the OC remediation process in part by biodegradation.
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Affiliation(s)
- Angélique San Miguel
- Laboratoire d'Ecologie Alpine, UMR CNRS n°5553, Université Joseph Fourier, BP 53, 38041, Grenoble Cedex 09, France
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Vyas TK, Murthy SR. Chlorobenzene degradation byBacillussp. TAS6CB: A potential candidate to remediate chlorinated hydrocarbon contaminated sites. J Basic Microbiol 2013; 55:382-8. [DOI: 10.1002/jobm.201200758] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2012] [Accepted: 04/14/2013] [Indexed: 11/12/2022]
Affiliation(s)
- Trupti K. Vyas
- P D Patel Institute of Applied Sciences, Charotar University of Science and Technology; Changa India
| | - Shruti R. Murthy
- P D Patel Institute of Applied Sciences, Charotar University of Science and Technology; Changa India
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Petrikov K, Delegan Y, Surin A, Ponamoreva O, Puntus I, Filonov A, Boronin A. Glycolipids of Pseudomonas and Rhodococcus oil-degrading bacteria used in bioremediation preparations: Formation and structure. Process Biochem 2013. [DOI: 10.1016/j.procbio.2013.04.008] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Biosurfactant-enhanced immobilization of hydrocarbon-oxidizing Rhodococcus ruber on sawdust. Appl Microbiol Biotechnol 2013; 97:5315-27. [DOI: 10.1007/s00253-013-4869-y] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2013] [Revised: 03/17/2013] [Accepted: 03/19/2013] [Indexed: 10/27/2022]
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22
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Tischler D, Niescher S, Kaschabek SR, Schlömann M. Trehalose phosphate synthases OtsA1 and OtsA2 of Rhodococcus opacus 1CP. FEMS Microbiol Lett 2013; 342:113-22. [PMID: 23398506 DOI: 10.1111/1574-6968.12096] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2012] [Revised: 02/01/2013] [Accepted: 02/04/2013] [Indexed: 11/27/2022] Open
Abstract
Rhodococcus opacus 1CP produces trehalose dinocardiomycolates during growth on long-chained n-alkanes. Trehalose and trehalose-6-phosphate, which are synthesized via the OtsAB pathway, are probable intermediates in the biosynthesis of these biosurfactants. By molecular genetic screening for trehalose-6-phosphate synthases (TPSs and OtsAs), two chromosomal fragments of strain 1CP were obtained. Each contained an ORF whose amino acid sequence showed high similarity to TPSs. To prove the activity of the otsA1 and otsA2 gene product and to detect catalytic differences, both were expressed as His-tagged fusion proteins. Enzyme kinetics of the enriched proteins using several potential glucosyl acceptors showed an exclusive preference for glucose-6-phosphate. In contrast, both enzymes were shown to differ significantly from each other in their activity with different glucosyl nucleotides as glucosyl donors. OtsA1-His10 showed highest activity with ADP-glucose and UDP-glucose, whereas OtsA2-His10 preferred UDP-glucose. In addition, the wild-type OtsA activity of R. opacus 1CP was investigated and compared with recombinant enzymes. Results indicate that OstA2 mainly contributes to the trehalose pool of strain 1CP. OtsA1 seems to be involved in the overproduction of trehalose lipids. For the first time, a physiological role of two different OtsAs obtained of a single Rhodococcus strain was presumed.
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Affiliation(s)
- Dirk Tischler
- Interdisciplinary Ecological Center, Environmental Microbiology Group, TU Bergakademie Freiberg, 09599 Freiberg, Germany.
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Biodegradation of 4-nitrotoluene with biosurfactant production by Rhodococcus pyridinivorans NT2: metabolic pathway, cell surface properties and toxicological characterization. Biodegradation 2013; 24:775-93. [DOI: 10.1007/s10532-013-9627-4] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2012] [Accepted: 02/01/2013] [Indexed: 10/27/2022]
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Domingues PM, Louvado A, Oliveira V, Coelho FJCR, Almeida A, Gomes NCM, Cunha A. SELECTIVE CULTURES FOR THE ISOLATION OF BIOSURFACTANT PRODUCING BACTERIA: COMPARISON OF DIFFERENT COMBINATIONS OF ENVIRONMENTAL INOCULA AND HYDROPHOBIC CARBON SOURCES. Prep Biochem Biotechnol 2013; 43:237-55. [DOI: 10.1080/10826068.2012.719848] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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25
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Mishra S, Singh SN. Microbial degradation of n-hexadecane in mineral salt medium as mediated by degradative enzymes. BIORESOURCE TECHNOLOGY 2012; 111:148-154. [PMID: 22405754 DOI: 10.1016/j.biortech.2012.02.049] [Citation(s) in RCA: 58] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2011] [Revised: 02/08/2012] [Accepted: 02/10/2012] [Indexed: 05/31/2023]
Abstract
In the present study, n-hexadecane degradation in MSM was investigated by three bacteria identified as Pseudomonas aeruginosa PSA5, Rhodococcus sp. NJ2 and Ochrobactrum intermedium P2, isolated from petroleum sludge. During 10 days of incubation, n-hexadecane was degraded to 99% by P. aeruginosa PSA5, 95% by Rhodococcus sp. NJ2 and 92% by O. intermedium P2. During degradation process, the induction of catabolic enzymes alkane hydroxylase, alcohol dehydrogenase and lipase were also examined. Among these enzymes, the highest activities of alkane hydroxylase (185 μmol mg(-1) protein) and alcohol dehydrogenase (75.78 μmol mg(-1) protein) were recorded in Rhodococcus sp. NJ2 while lipase activity was highly induced in P. aeruginosa PSA5 (48.71 μmol mg(-1) protein). Besides, accumulation of n-hexadecane in inclusion bodies was found to be maximum 60.8 g l(-1) in P. aeruginosa PSA5, followed by Rhodococcus sp. NJ2 (56.1 g l(-1)) and the least (51.6 g l(-1)) was found in O. intermedium P2. Biosurfactant production by bacterial strains was indicated by the reduction in surface tension and induction of cell surface hydrophobicity and pseudosolubilization which facilitated n-hexadecane degradation.
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Affiliation(s)
- Shweta Mishra
- Environmental Science Division, CSIR-National Botanical Research Institute (NBRI), Lucknow 226001, Uttar Pradesh, India
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Degradation of difluorobenzenes by the wild strain Labrys portucalensis. Biodegradation 2012; 23:653-62. [DOI: 10.1007/s10532-012-9541-1] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2011] [Accepted: 01/20/2012] [Indexed: 10/14/2022]
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Solyanikova I, Golovleva L. Biochemical features of the degradation of pollutants by Rhodococcus as a basis for contaminated wastewater and soil cleanup. Microbiology (Reading) 2011. [DOI: 10.1134/s0026261711050158] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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Gogotov IN, Khodakov RS. Surfactant production by the Rhodococcus erythropolis sH-5 bacterium grown on various carbon sources. APPL BIOCHEM MICRO+ 2011. [DOI: 10.1134/s0003683808020105] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Novel Polyoxyethylene-Containing Glycolipids Are Synthesized in Corynebacterium matruchotii and Mycobacterium smegmatis Cultured in the Presence of Tween 80. J Lipids 2010; 2011:676535. [PMID: 21490808 PMCID: PMC3066834 DOI: 10.1155/2011/676535] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2010] [Accepted: 04/21/2010] [Indexed: 12/03/2022] Open
Abstract
The addition of polyoxyethylene sorbitan monooleate (Tween 80) to a culture of mycobacteria greatly influences cell permeability and sensitivity to antibiotics but very little is known regarding the underlying mechanism. Here we show that Corynebacterium matruchotii (surrogate of mycobacteria) converts Tween 80 to a structural series of polyoxyethylenic acids which are then used to form novel series-2A and series-2B glycolipids. Minor series-3 glycolipids were also synthesized. The polyoxyethylenic acids replaced corynomycolic acids in the cell wall. Correspondingly the trehalose dicorynomycolate content was reduced. MALDI mass spectrometry, MS-MS, 1H-NMR, and 13C-NMR were used to characterize the series-2 glycolipids. Series-2A glycolipid is trehalose 6-C36:2-corynomycolate-6′-polyoxyethylenate and series-2B glycolipid is trehalose 6-C36:2-corynomycolate-6′-furan ring-containing polyoxyethylenate. Mycobacterium smegmatis grown in the presence of Tween 80 also synthesizes series-2 type glycolipids. The synthesis of these novel glycolipids in corynebacteria and mycobacteria should result in gross changes in the cell wall permeability and drug sensitivity.
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Tarawneh KA, Irshaid F, Ajlundi IH, Abboud MM, Mohammed NA, Khleifat AM. Biodegradation Kinetics of Four Substituted Chlorobenzoic Acids by Enterobacter aerogenes. BIOREMEDIATION JOURNAL 2010; 14:55-66. [DOI: 10.1080/10889861003745676] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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31
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Franzetti A, Gandolfi I, Bestetti G, Smyth TJP, Banat IM. Production and applications of trehalose lipid biosurfactants. EUR J LIPID SCI TECH 2010. [DOI: 10.1002/ejlt.200900162] [Citation(s) in RCA: 162] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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32
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Kuyukina MS, Ivshina IB. Rhodococcus Biosurfactants: Biosynthesis, Properties, and Potential Applications. BIOLOGY OF RHODOCOCCUS 2010. [DOI: 10.1007/978-3-642-12937-7_11] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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Yam KC, van der Geize R, Eltis LD. Catabolism of Aromatic Compounds and Steroids by Rhodococcus. BIOLOGY OF RHODOCOCCUS 2010. [DOI: 10.1007/978-3-642-12937-7_6] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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34
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Marco-Urrea E, Pérez-Trujillo M, Caminal G, Vicent T. Dechlorination of 1,2,3- and 1,2,4-trichlorobenzene by the white-rot fungus Trametes versicolor. JOURNAL OF HAZARDOUS MATERIALS 2009; 166:1141-1147. [PMID: 19179004 DOI: 10.1016/j.jhazmat.2008.12.076] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2008] [Revised: 11/05/2008] [Accepted: 12/03/2008] [Indexed: 05/27/2023]
Abstract
The degradation of 1,2,3-, 1,3,5- and 1,2,4-trichlorobenzene (TCB) by the white-rot fungus Trametes versicolor was studied. Time course experiments showed a degradation rate of 2.27 and 2.49 nmol d(-1)mg(-1) dry weight of biomass during the first 4d of incubation in cultures spiked with 6 mg L(-1) of 1,2,3- and 1,2,4-TCB, respectively. A high percent of degradation of 91.1% (1,2,3-TCB) and 79.6 (1,2,4-TCB) was obtained after 7d. However, T. versicolor was not able to degrade 1,3,5-TCB under the conditions tested. For a range of concentrations of 1,2,4-TCB between 6.5 and 23 mg L(-1), a complete dechlorination of the molecule was observed. Cytochrome P450 monooxygenase appears to be involve in the first step of 1,2,4-TCB degradation, as evidenced by marked inhibition of both dechlorination and degradation of 1,2,4-TCB in the presence of the known cyt P450 inhibitors 1-aminobenzotriazole and piperonyl butoxide. Four intermediates formed from 1,2,4-TCB degradation were detected the second day of incubation, which did not appear the seventh day: 2,3,5-trichloromuconate, its corresponding carboxymethylenebutenolide, 2- or 5-chloro-4-oxo-2-hexendioic acid and 2- or 5-chloro-5-hydroxy-4-oxo-2-pentenoic acid. Based on these results, a degradation pathway of 1,2,4-TCB through cyt P450 monooxygenase and epoxide hydrolase was proposed.
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Affiliation(s)
- Ernest Marco-Urrea
- Departament d'Enginyeria Química and Institut de Ciència i Tecnologia Ambiental, Escola Tècnica Superior d'Enginyeria (ETSE), Universitat Autònoma de Barcelona (UAB), 08193 Bellaterra, Spain
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Isolation and characterization of trehalose tetraester biosurfactants from a soil strain Micrococcus luteus BN56. Process Biochem 2009. [DOI: 10.1016/j.procbio.2008.09.016] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Martínková L, Uhnáková B, Pátek M, Nesvera J, Kren V. Biodegradation potential of the genus Rhodococcus. ENVIRONMENT INTERNATIONAL 2009; 35:162-77. [PMID: 18789530 DOI: 10.1016/j.envint.2008.07.018] [Citation(s) in RCA: 293] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/29/2008] [Revised: 07/02/2008] [Accepted: 07/22/2008] [Indexed: 05/24/2023]
Abstract
A large number of aromatic compounds and organic nitriles, the two groups of compounds covered in this review, are intermediates, products, by-products or waste products of the chemical and pharmaceutical industries, agriculture and the processing of fossil fuels. The majority of these synthetic substances (xenobiotics) are toxic and their release and accumulation in the environment pose a serious threat to living organisms. Bioremediation using various bacterial strains of the genus Rhodococcus has proved to be a promising option for the clean-up of polluted sites. The large genomes of rhodococci, their redundant and versatile catabolic pathways, their ability to uptake and metabolize hydrophobic compounds, to form biofilms, to persist in adverse conditions and the availability of recently developed tools for genetic engineering in rhodococci make them suitable industrial microorganisms for biotransformations and the biodegradation of many organic compounds. The peripheral and central catabolic pathways in rhodococci are characterized for each type of aromatics (hydrocarbons, phenols, halogenated, nitroaromatic, and heterocyclic compounds) in this review. Pathways involved in the hydrolysis of nitrile pollutants (aliphatic nitriles, benzonitrile analogues) and the corresponding enzymes (nitrilase, nitrile hydratase) are described in detail. Examples of regulatory mechanisms for the expression of the catabolic genes are given. The strains that efficiently degrade the compounds in question are highlighted and examples of their use in biodegradation processes are presented.
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Affiliation(s)
- Ludmila Martínková
- Centre of Biocatalysis and Biotransformation, Institute of Microbiology, Academy of Sciences of the Czech Republic, Vídenská 1083, CZ-142 20 Prague 4, Czech Republic.
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Saeki H, Sasaki M, Komatsu K, Miura A, Matsuda H. Oil spill remediation by using the remediation agent JE1058BS that contains a biosurfactant produced by Gordonia sp. strain JE-1058. BIORESOURCE TECHNOLOGY 2009; 100:572-7. [PMID: 18692393 DOI: 10.1016/j.biortech.2008.06.046] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2008] [Revised: 06/23/2008] [Accepted: 06/24/2008] [Indexed: 05/15/2023]
Abstract
A remediation agent containing a biosurfactant was prepared by spray drying the sterilized culture broth of Gordonia sp. strain JE-1058, and the agent was designated as JE1058BS. On subjection to the baffled flask test developed by the United States Environmental Protection Agency, JE1058BS showed a strong potential to be applied as an oil spill dispersant even in the absence of a solvent. It also proved to be an effective bioremediation agent for the remediation of oil spills at sea. The addition of JE1058BS to seawater stimulated the degradation of weathered crude oil (ANS 521) via the activity of the indigenous marine bacteria. Its addition also stimulated the removal of crude oil from the surface of contaminated sea sand. These results indicate that biosurfactant-containing JE1058BS has a strong potential to be applied as a remediation agent for the clean-up of oil spills at sea and on shorelines.
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Affiliation(s)
- Hisashi Saeki
- Bio Research Center, Japan Energy Corporation, 3-17-35 Niizo-minami, Toda-shi, Saitama 335-0027, Japan.
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38
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Biodegradation of diesel oil and production of fatty acid esters by a newly isolated Pseudomonas citronellolis KHA. World J Microbiol Biotechnol 2008. [DOI: 10.1007/s11274-008-9863-7] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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39
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Biodegradation kinetics of 2,4,6-trichlorophenol by Rhodococcus rhodochrous in batch culture. Enzyme Microb Technol 2008. [DOI: 10.1016/j.enzmictec.2008.02.001] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Takei D, Washio K, Morikawa M. Identification of alkane hydroxylase genes in Rhodococcus sp. strain TMP2 that degrades a branched alkane. Biotechnol Lett 2008; 30:1447-52. [PMID: 18414802 DOI: 10.1007/s10529-008-9710-9] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2008] [Revised: 03/10/2008] [Accepted: 03/12/2008] [Indexed: 11/28/2022]
Abstract
Rhodococcus sp. TMP2 is an alkane-degrading strain that can grow with a branched alkane as a sole carbon source. TMP2 degrades considerable amounts of pristane at 20 degrees C but not at 30 degrees C. In order to gain insights into microbial alkane degradation, we characterized one of the key enzymes for alkane degradation. TMP2 contains at least five genes for membrane-bound, non-heme iron, alkane hydroxylase, known as AlkB (alkB1-5). Phylogenetical analysis using bacterial alkB genes indicates that TMP2 is a close relative of the alkane-degrading bacteria, such as Rhodococcus erythropolis NRRL B-16531 and Q15. RT-PCR analysis showed that expressions of the genes for AlkB1 and AlkB2 were apparently induced by the addition of pristane at a low temperature. The results suggest that TMP2 recruits certain alkane hydroxylase systems to utilize a branched alkane under low temperature conditions.
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Affiliation(s)
- Daisuke Takei
- Division of Biosphere Science, Graduate School of Environmental Science, Hokkaido University, Sapporo 060-0810, Japan
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Tuleva B, Christova N, Cohen R, Stoev G, Stoineva I. Production and structural elucidation of trehalose tetraesters (biosurfactants) from a novel alkanothrophic Rhodococcus wratislaviensis strain. J Appl Microbiol 2008; 104:1703-10. [PMID: 18194255 DOI: 10.1111/j.1365-2672.2007.03680.x] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
AIMS To isolate a biosurfactant-producing bacterial strain and to identify and characterize the chemical structure and properties of its biosurfactants. METHODS AND RESULTS The bacterium Rhodococcus wratislaviensis BN38, isolated from soil, was found to produce glycolipid biosurfactants when grown on 2%n-hexadecane. The glycolipids were isolated by chromatography on silica gel columns and their structures elucidated using a combination of multidimensional NMR and ESI-MS/MS techniques. The main product was identified as 2,3,4,2'-trehalose tetraester with molecular mass of 876 g mol(-1). It was also noted that the biosurfactant was produced under nitrogen-limiting conditions and could not be synthesized from water-soluble substrates. The purified product showed extremely high surface-active properties. CONCLUSIONS The glycolipid biosurfactant produced by the alkanothrophic strain R. wratislaviensis BN38 was characterized to be 2,3,4,2'-trehalose tetraester which exhibited high surfactant activities. SIGNIFICANCE AND IMPACT OF THE STUDY Strain BN38 of R. wratislaviensis is a potential candidate for use in bioremediation applications or in biosurfactant exploration.
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Affiliation(s)
- B Tuleva
- Institute of Microbiology, Bulgarian Academy of Sciences, Sofia, Bulgaria
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Stroud JL, Paton GI, Semple KT. Microbe-aliphatic hydrocarbon interactions in soil: implications for biodegradation and bioremediation. J Appl Microbiol 2007; 102:1239-53. [PMID: 17448159 DOI: 10.1111/j.1365-2672.2007.03401.x] [Citation(s) in RCA: 93] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Aliphatic hydrocarbons make up a substantial portion of organic contamination in the terrestrial environment. However, most studies have focussed on the fate and behaviour of aromatic contaminants in soil. Despite structural differences between aromatic and aliphatic hydrocarbons, both classes of contaminants are subject to physicochemical processes, which can affect the degree of loss, sequestration and interaction with soil microflora. Given the nature of hydrocarbon contamination of soils and the importance of bioremediation strategies, understanding the fate and behaviour of aliphatic hydrocarbons is imperative, particularly microbe-contaminant interactions. Biodegradation by microbes is the key removal process of hydrocarbons in soils, which is controlled by hydrocarbon physicochemistry, environmental conditions, bioavailability and the presence of catabolically active microbes. Therefore, the aims of this review are (i) to consider the physicochemical properties of aliphatic hydrocarbons and highlight mechanisms controlling their fate and behaviour in soil; (ii) to discuss the bioavailability and bioaccessibility of aliphatic hydrocarbons in soil, with particular attention being paid to biodegradation, and (iii) to briefly consider bioremediation techniques that may be applied to remove aliphatic hydrocarbons from soil.
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Affiliation(s)
- J L Stroud
- Department of Environmental Science, Faculty of Science and Technology, Lancaster University, Lancaster, UK
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Wang F, Grundmann S, Schmid M, Dörfler U, Roherer S, Charles Munch J, Hartmann A, Jiang X, Schroll R. Isolation and characterization of 1,2,4-trichlorobenzene mineralizing Bordetella sp. and its bioremediation potential in soil. CHEMOSPHERE 2007; 67:896-902. [PMID: 17204305 DOI: 10.1016/j.chemosphere.2006.11.019] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2006] [Revised: 10/26/2006] [Accepted: 11/05/2006] [Indexed: 05/13/2023]
Abstract
A soil which has been polluted with chlorinated benzenes for more than 25 years was used for isolation of adapted microorganisms able to mineralize 1,2,4-trichlorobenzene (1,2,4-TCB). A microbial community was enriched from this soil and acclimated in liquid culture under aerobic conditions using 1,2,4-TCB as a sole available carbon source. From this community, two strains were isolated and identified by comparative sequence analysis of their 16S-rRNA coding genes as members of the genus Bordetella with Bordetella sp. QJ2-5 as the highest homological strain and with Bordetella petrii as the closest related described species. The 16S-rDNA of the two isolated strains showed a similarity of 100%. These strains were able to mineralize 1,2,4-TCB within two weeks to approximately 50% in liquid culture experiments. One of these strains was reinoculated to an agricultural soil with low native 1,2,4-TCB degradation capacity to investigate its bioremediation potential. The reinoculated strain kept its biodegradation capability: (14)C-labeled 1,2,4-TCB applied to this inoculated soil was mineralized to about 40% within one month of incubation. This indicates a possible application of the isolated Bordetella sp. for bioremediation of 1,2,4-TCB contaminated sites.
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Affiliation(s)
- Fang Wang
- Institute of Soil Ecology, GSF - National Research Center for Environment and Health, 85764 Neuherberg, Germany
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Qi Y, Zhao L, Olusheyi OZ, Tan X. Isolation and preliminary characterization of a 3-chlorobenzoate degrading bacteria. J Environ Sci (China) 2007; 19:332-337. [PMID: 17918596 DOI: 10.1016/s1001-0742(07)60054-0] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
A study was conducted to compare the diversity of 2-, 3-, and 4-chlorobenzoate degraders in two pristine soils and one contaminated sewage sludge. These samples contained strikingly different populations of mono-chlorobenzoate degraders. Although fewer cultures were isolated in the uncontaminated soils than contaminated one, the ability of microbial populations to mineralize chlorobenzoate was widespread. The 3- and 4-chlorobenzoate degraders were more diverse than the 2-chlorobenzoate degraders. One of the strains isolated from the sewage sludge was obtained. Based on its phenotype, chemotaxonomic properties and 16S rRNA gene, the organism S-7 was classified as Rhodococcus erythropolis. The strain can grow at temperature from 4 to 37 degrees C. It can utilize several (halo)aromatic compounds. Moreover, strain S-7 can grow and use 3-chlorobenzoate as sole carbon source in a temperatures range of 10-30 degrees C with stoichiometric release of chloride ions. The psychrotolerant ability was significant for bioremediation in low temperature regions. Catechol and chlorocatechol 1,2-dioxygenase activities were present in cell free extracts of the strain, but no (chloro)catechol 2,3-dioxygenase activities was detected. Spectral conversion assays with extracts from R. erythropolis S-7 showed accumulation of a compound with a similar UV spectrum as chloro-cis,cis-muconate from 3-chlorobenzoate. On the basis of these results, we proposed that S-7 degraded 3-chlorobenzoate through the modified ortho-cleave pathway.
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Affiliation(s)
- Yun Qi
- School of Environmental Science and Engineering, Tianjin University, Tianjin 300072, China.
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Monferrán MV, Echenique JR, Wunderlin DA. Degradation of chlorobenzenes by a strain of Acidovorax avenae isolated from a polluted aquifer. CHEMOSPHERE 2005; 61:98-106. [PMID: 16157172 DOI: 10.1016/j.chemosphere.2005.03.003] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2004] [Revised: 01/18/2005] [Accepted: 03/07/2005] [Indexed: 05/04/2023]
Abstract
A subsurface microbial community was isolated from a polluted site of Suquía River (Córdoba-Argentina), acclimated during 15 days in aerobic conditions using 1,2-dichlorobenzene (1,2-DCB) as the sole carbon source. From this acclimated community, we isolated and identified by 16S rDNA analysis a strain of Acidovorax avenae, which was able to perform the complete biodegradation of 1,2-DCB in two days affording stoichiometric amounts of chloride. This pure strain was also tested for biodegradation of chlorobenzene (CB); 1,3-DCB and 1,4-DCB, giving similar results to the experiments using 1,2-DCB. The aromatic-ring-hydroxylating dioxygenase (ARHDO) alpha-subunit gene core, encoding the catalytic site of the large subunit of chlorobenzene dioxygenase, was detected by PCR amplification and confirmed by DNA sequencing. These results suggest that the isolated strain of A. avenae could use a catabolic pathway, via ARHDO system, leading to the formation of chlorocatecols during the first steps of biodegradation, with further chloride release and subsequent paths that showed complete substrate consumption.
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Affiliation(s)
- Magdalena V Monferrán
- Universidad Nacional de Córdoba-CONICET, Facultad de Ciencias Químicas, Dep. Bioquímica Clínica-CIBICI, Haya de La Torre esq, Medina Allende, Ciudad Universitaria, 5000 Córdoba, Argentina
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Niescher S, Wray V, Lang S, Kaschabek SR, Schlömann M. Identification and structural characterisation of novel trehalose dinocardiomycolates from n-alkane-grown Rhodococcus opacus 1CP. Appl Microbiol Biotechnol 2005; 70:605-11. [PMID: 16133336 DOI: 10.1007/s00253-005-0113-8] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2005] [Revised: 07/20/2005] [Accepted: 07/20/2005] [Indexed: 11/27/2022]
Abstract
Rhodococcus opacus 1CP, a potent degrader of (chloro-) aromatic compounds was found to utilise C10-C16 n-alkanes as sole carbon sources. Highest conversion rates were observed with n-tetradecane and n-hexadecane, whereas the utilisation of n-dodecane and n-decane was considerably slower. Thin-layer chromatography of organic extracts of n-alkane-grown 1CP cultures indicated the growth-associated formation of a glycolipid which was characterised as a trehalose dimycolate by 1H-NMR spectroscopy and mass spectrometry. Total chain lengths between 48 and 54 carbons classify the fatty acid residues as nocardiomycolic acids. The presence of two double bonds in each mycolic acid is another feature that distinguishes the corresponding trehalose dinocardiomycolates from trehalose dicorynomycolates reported for Rhodococcus erythropolis DSM43215 and Rhodococcus ruber IEGM231. R. opacus 1CP was not found, even under nitrogen limitation, to produce anionic trehalose tetraesters which have previously been reported for R. erythropolis DSM43215.
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Kunihiro N, Haruki M, Takano K, Morikawa M, Kanaya S. Isolation and characterization of Rhodococcus sp. strains TMP2 and T12 that degrade 2,6,10,14-tetramethylpentadecane (pristane) at moderately low temperatures. J Biotechnol 2005; 115:129-36. [PMID: 15607231 DOI: 10.1016/j.jbiotec.2004.07.018] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2004] [Revised: 07/14/2004] [Accepted: 07/30/2004] [Indexed: 11/30/2022]
Abstract
Branched alkanes including 2,6,10,14-tetramethylpentadecane (pristane) are more resistant to biological degradation than straight-chain alkanes especially under low-temperature conditions, such as 10 degrees C. Two bacterial strains, TMP2 and T12, that are capable of degrading pristane at 10 degrees C were isolated and characterized. Both strains grew optimally at 30 degrees C and were identified as Rhodococcus sp. based on the 16S rRNA gene sequences. Strain T12 degraded comparable amounts of pristane in a range of temperatures from 10 to 30 degrees C and strain TMP2 degraded pristane similarly at 10 and 20 degrees C but did not degrade it at 30 degrees C. These data suggest that the strains have adapted their pristane degradation system to moderately low-temperature conditions.
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Affiliation(s)
- Namio Kunihiro
- Department of Material and Life Science, Graduate School of Engineering, Osaka University, Suita, Osaka 565-0871, Japan
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Bach H, Gutnick D. Chapter 9 Potential applications of bioemulsifiers in the oil industry. ACTA ACUST UNITED AC 2004. [DOI: 10.1016/s0167-2991(04)80150-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/09/2023]
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