• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (5081092)   Today's Articles (1126)
For: Gymrek M, Golan D, Rosset S, Erlich Y. lobSTR: A short tandem repeat profiler for personal genomes. Genome Res 2012;22:1154-62. [PMID: 22522390 PMCID: PMC3371701 DOI: 10.1101/gr.135780.111] [Citation(s) in RCA: 224] [Impact Index Per Article: 17.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Number Cited by Other Article(s)
1
van der Sanden B, Neveling K, Shukor S, Gallagher MD, Lee J, Burke SL, Pennings M, van Beek R, Oorsprong M, Kater-Baats E, Kamping E, Tieleman AA, Voermans NC, Scheffer IE, Gecz J, Corbett MA, Vissers LELM, Pang AWC, Hastie A, Kamsteeg EJ, Hoischen A. Optical genome mapping enables accurate testing of large repeat expansions. Genome Res 2025;35:810-823. [PMID: 40113266 PMCID: PMC12047237 DOI: 10.1101/gr.279491.124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2024] [Accepted: 02/24/2025] [Indexed: 03/22/2025]
2
Xu IRL, Danzi MC, Raposo J, Züchner S. The continued promise of genomic technologies and software in neurogenetics. J Neuromuscul Dis 2025:22143602251325345. [PMID: 40208247 DOI: 10.1177/22143602251325345] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/11/2025]
3
Liu Y, Xia K. Aberrant Short Tandem Repeats: Pathogenicity, Mechanisms, Detection, and Roles in Neuropsychiatric Disorders. Genes (Basel) 2025;16:406. [PMID: 40282366 PMCID: PMC12026680 DOI: 10.3390/genes16040406] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2025] [Revised: 03/17/2025] [Accepted: 03/19/2025] [Indexed: 04/29/2025]  Open
4
Tan X, Zeng W, Yang Y, Lin Z, Li F, Liu J, Chen S, Liu YG, Xie W, Xie X. Genome-wide profiling of polymorphic short tandem repeats and their influence on gene expression and trait variation in diverse rice populations. J Genet Genomics 2025:S1673-8527(25)00078-5. [PMID: 40089018 DOI: 10.1016/j.jgg.2025.03.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2025] [Revised: 03/10/2025] [Accepted: 03/10/2025] [Indexed: 03/17/2025]
5
Romsos EL, Kiesler KM, Steffen CR, Borsuk LA, Riman S, Mullen LE, Irwin JA, Vallone PM, Gettings KB. Development of Publicly Available Forensic DNA Sequence Mixture Data. Genes (Basel) 2025;16:333. [PMID: 40149484 PMCID: PMC11941798 DOI: 10.3390/genes16030333] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2025] [Revised: 03/07/2025] [Accepted: 03/11/2025] [Indexed: 03/29/2025]  Open
6
Jeanjean S, Shen Y, Hardy L, Daunay A, Delépine M, Gerber Z, Alberdi A, Tubacher E, Deleuze JF, How-Kit A. A detailed analysis of second and third-generation sequencing approaches for accurate length determination of short tandem repeats and homopolymers. Nucleic Acids Res 2025;53:gkaf131. [PMID: 40036507 PMCID: PMC11878640 DOI: 10.1093/nar/gkaf131] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2024] [Revised: 01/13/2025] [Accepted: 02/11/2025] [Indexed: 03/06/2025]  Open
7
Al-Abri R, Gürsoy G. ScatTR: Estimating the Size of Long Tandem Repeat Expansions from Short-Reads. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2025.02.15.638440. [PMID: 40027646 PMCID: PMC11870476 DOI: 10.1101/2025.02.15.638440] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 03/05/2025]
8
Doss RM, Lopez-Ignacio S, Dischler A, Hiatt L, Dashnow H, Breuss MW, Dias CM. Mosaicism in Short Tandem Repeat Disorders: A Clinical Perspective. Genes (Basel) 2025;16:216. [PMID: 40004546 PMCID: PMC11855715 DOI: 10.3390/genes16020216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2024] [Revised: 02/06/2025] [Accepted: 02/10/2025] [Indexed: 02/27/2025]  Open
9
Wang P, Sheng X, Xia X, Wang F, Li R, Ahmed Z, Chen N, Lei C, Ma Z. The genomic landscape of short tandem repeats in cattle. Anim Genet 2025;56:e13498. [PMID: 39692037 DOI: 10.1111/age.13498] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2024] [Revised: 12/04/2024] [Accepted: 12/05/2024] [Indexed: 12/19/2024]
10
Lojova I, Kucharik M, Pös Z, Balaz A, Zatkova A, Tothova Tarova E, Budis J, Kadasi L, Szemes T, Radvanszky J. Advancing molecular diagnostics of myotonic dystrophy type 1 using short-read whole genome sequencing. Mol Cell Probes 2025;79:102005. [PMID: 39710066 DOI: 10.1016/j.mcp.2024.102005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2024] [Revised: 12/20/2024] [Accepted: 12/20/2024] [Indexed: 12/24/2024]
11
Maestri S, Scalzo D, Damaggio G, Zobel M, Besusso D, Cattaneo E. Navigating triplet repeats sequencing: concepts, methodological challenges and perspective for Huntington's disease. Nucleic Acids Res 2025;53:gkae1155. [PMID: 39676657 PMCID: PMC11724279 DOI: 10.1093/nar/gkae1155] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2024] [Revised: 10/16/2024] [Accepted: 12/02/2024] [Indexed: 12/17/2024]  Open
12
Hou Q, Ji W, An K, Tan Y, Liu P, Su J. Genomic microsatellite characterization and development of polymorphic microsatellites in Eospalax baileyi. Sci Rep 2025;15:524. [PMID: 39747356 PMCID: PMC11696105 DOI: 10.1038/s41598-024-84631-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2024] [Accepted: 12/25/2024] [Indexed: 01/04/2025]  Open
13
Haasl RJ, Payseur BA. Fitness landscapes of human microsatellites. PLoS Genet 2024;20:e1011524. [PMID: 39775235 PMCID: PMC11734926 DOI: 10.1371/journal.pgen.1011524] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2024] [Revised: 01/15/2025] [Accepted: 12/03/2024] [Indexed: 01/11/2025]  Open
14
Zhang X, Ji X, Wang L, Chi L, Li C, Wen S, Chen H. STRsensor: a computationally efficient method for STR allele-typing from massively parallel sequencing data. Brief Bioinform 2024;26:bbae637. [PMID: 39665493 PMCID: PMC11635639 DOI: 10.1093/bib/bbae637] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2024] [Revised: 08/16/2024] [Accepted: 11/22/2024] [Indexed: 12/13/2024]  Open
15
Tesi N, Salazar A, Zhang Y, van der Lee S, Hulsman M, Knoop L, Wijesekera S, Krizova J, Schneider AF, Pennings M, Sleegers K, Kamsteeg EJ, Reinders M, Holstege H. Characterizing tandem repeat complexities across long-read sequencing platforms with TREAT and otter. Genome Res 2024;34:1942-1953. [PMID: 39406499 DOI: 10.1101/gr.279351.124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2024] [Accepted: 10/03/2024] [Indexed: 11/09/2024]
16
Fedele E, Wetton JH, Jobling MA. Sequencing the orthologs of human autosomal forensic short tandem repeats provides individual- and species-level identification in African great apes. BMC Ecol Evol 2024;24:134. [PMID: 39482599 PMCID: PMC11526555 DOI: 10.1186/s12862-024-02324-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Accepted: 10/17/2024] [Indexed: 11/03/2024]  Open
17
Dolzhenko E, English A, Dashnow H, De Sena Brandine G, Mokveld T, Rowell WJ, Karniski C, Kronenberg Z, Danzi MC, Cheung WA, Bi C, Farrow E, Wenger A, Chua KP, Martínez-Cerdeño V, Bartley TD, Jin P, Nelson DL, Zuchner S, Pastinen T, Quinlan AR, Sedlazeck FJ, Eberle MA. Characterization and visualization of tandem repeats at genome scale. Nat Biotechnol 2024;42:1606-1614. [PMID: 38168995 PMCID: PMC11921810 DOI: 10.1038/s41587-023-02057-3] [Citation(s) in RCA: 43] [Impact Index Per Article: 43.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2023] [Accepted: 11/06/2023] [Indexed: 01/05/2024]
18
He H, Leng Y, Cao X, Zhu Y, Li X, Yuan Q, Zhang B, He W, Wei H, Liu X, Xu Q, Guo M, Zhang H, Yang L, Lv Y, Wang X, Shi C, Zhang Z, Chen W, Zhang B, Wang T, Yu X, Qian H, Zhang Q, Dai X, Liu C, Cui Y, Wang Y, Zheng X, Xiong G, Zhou Y, Qian Q, Shang L. The pan-tandem repeat map highlights multiallelic variants underlying gene expression and agronomic traits in rice. Nat Commun 2024;15:7291. [PMID: 39181885 PMCID: PMC11344853 DOI: 10.1038/s41467-024-51854-0] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Accepted: 08/20/2024] [Indexed: 08/27/2024]  Open
19
Loh CA, Shields DA, Schwing A, Evrony GD. High-fidelity, large-scale targeted profiling of microsatellites. Genome Res 2024;34:1008-1026. [PMID: 39013593 PMCID: PMC11368184 DOI: 10.1101/gr.278785.123] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2023] [Accepted: 07/11/2024] [Indexed: 07/18/2024]
20
Tanudisastro HA, Deveson IW, Dashnow H, MacArthur DG. Sequencing and characterizing short tandem repeats in the human genome. Nat Rev Genet 2024;25:460-475. [PMID: 38366034 DOI: 10.1038/s41576-024-00692-3] [Citation(s) in RCA: 37] [Impact Index Per Article: 37.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/06/2023] [Indexed: 02/18/2024]
21
Perry A, Eddelbuettel D, Rosenthal G, Blackmon H. Polly: An R package for genotyping microsatellites and detecting highly polymorphic DNA markers from short-read data. Mol Ecol Resour 2024;24:e13933. [PMID: 38299378 PMCID: PMC10994724 DOI: 10.1111/1755-0998.13933] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2022] [Revised: 01/10/2024] [Accepted: 01/23/2024] [Indexed: 02/02/2024]
22
Oketch JW, Wain LV, Hollox EJ. A comparison of software for analysis of rare and common short tandem repeat (STR) variation using human genome sequences from clinical and population-based samples. PLoS One 2024;19:e0300545. [PMID: 38558075 PMCID: PMC10984476 DOI: 10.1371/journal.pone.0300545] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2024] [Accepted: 02/27/2024] [Indexed: 04/04/2024]  Open
23
Lu J, Toro C, Adams DR, Moreno CAM, Lee WP, Leung YY, Harms MB, Vardarajan B, Heinzen EL. LUSTR: a new customizable tool for calling genome-wide germline and somatic short tandem repeat variants. BMC Genomics 2024;25:115. [PMID: 38279154 PMCID: PMC10811831 DOI: 10.1186/s12864-023-09935-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2023] [Accepted: 12/21/2023] [Indexed: 01/28/2024]  Open
24
Birnbaum R. Rediscovering tandem repeat variation in schizophrenia: challenges and opportunities. Transl Psychiatry 2023;13:402. [PMID: 38123544 PMCID: PMC10733427 DOI: 10.1038/s41398-023-02689-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Revised: 11/23/2023] [Accepted: 11/27/2023] [Indexed: 12/23/2023]  Open
25
Panoyan MA, Wendt FR. The role of tandem repeat expansions in brain disorders. Emerg Top Life Sci 2023;7:249-263. [PMID: 37401564 DOI: 10.1042/etls20230022] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2023] [Revised: 06/05/2023] [Accepted: 06/19/2023] [Indexed: 07/05/2023]
26
Chaisson MJP, Sulovari A, Valdmanis PN, Miller DE, Eichler EE. Advances in the discovery and analyses of human tandem repeats. Emerg Top Life Sci 2023;7:361-381. [PMID: 37905568 PMCID: PMC10806765 DOI: 10.1042/etls20230074] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2023] [Revised: 10/18/2023] [Accepted: 10/18/2023] [Indexed: 11/02/2023]
27
Hannan AJ. Expanding horizons of tandem repeats in biology and medicine: Why 'genomic dark matter' matters. Emerg Top Life Sci 2023;7:ETLS20230075. [PMID: 38088823 PMCID: PMC10754335 DOI: 10.1042/etls20230075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2023] [Revised: 11/27/2023] [Accepted: 11/27/2023] [Indexed: 12/30/2023]
28
Mutti G, Oteo-Garcia G, Caldon M, da Silva MJF, Minhós T, Cowlishaw G, Gottelli D, Huchard E, Carter A, Martinez FI, Raveane A, Capelli C. Assessing the recovery of Y chromosome microsatellites with population genomic data using Papio and Theropithecus genomes. Sci Rep 2023;13:13839. [PMID: 37620368 PMCID: PMC10449864 DOI: 10.1038/s41598-023-40931-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2023] [Accepted: 08/18/2023] [Indexed: 08/26/2023]  Open
29
Wang X, Huang M, Budowle B, Ge J. TRcaller: a novel tool for precise and ultrafast tandem repeat variant genotyping in massively parallel sequencing reads. Front Genet 2023;14:1227176. [PMID: 37533432 PMCID: PMC10390829 DOI: 10.3389/fgene.2023.1227176] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2023] [Accepted: 06/13/2023] [Indexed: 08/04/2023]  Open
30
Kulthammanit N, Sathirapatya T, Sukawutthiya P, Noh H, Vongpaisarnsin K, Wichadakul D. STRategy: A support system for collecting and analyzing next-generation sequencing data of short tandem repeats for forensic science. PLoS One 2023;18:e0282551. [PMID: 37459339 PMCID: PMC10351723 DOI: 10.1371/journal.pone.0282551] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2023] [Accepted: 05/30/2023] [Indexed: 07/20/2023]  Open
31
Weisburd B, Tiao G, Rehm HL. Insights from a genome-wide truth set of tandem repeat variation. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.05.05.539588. [PMID: 37214979 PMCID: PMC10197592 DOI: 10.1101/2023.05.05.539588] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
32
Plavskin Y, de Biase MS, Schwarz RF, Siegal ML. The rate of spontaneous mutations in yeast deficient for MutSβ function. G3 (BETHESDA, MD.) 2023;13:6931805. [PMID: 36529906 PMCID: PMC9997558 DOI: 10.1093/g3journal/jkac330] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2022] [Revised: 08/25/2022] [Accepted: 11/30/2022] [Indexed: 12/23/2022]
33
Microsatellite Genome-Wide Database Development for the Commercial Blackhead Seabream (Acanthopagrus schlegelii). Genes (Basel) 2023;14:genes14030620. [PMID: 36980892 PMCID: PMC10048070 DOI: 10.3390/genes14030620] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2023] [Revised: 02/26/2023] [Accepted: 02/27/2023] [Indexed: 03/05/2023]  Open
34
Dashnow H, Pedersen BS, Hiatt L, Brown J, Beecroft SJ, Ravenscroft G, LaCroix AJ, Lamont P, Roxburgh RH, Rodrigues MJ, Davis M, Mefford HC, Laing NG, Quinlan AR. STRling: a k-mer counting approach that detects short tandem repeat expansions at known and novel loci. Genome Biol 2022;23:257. [PMID: 36517892 PMCID: PMC9753380 DOI: 10.1186/s13059-022-02826-4] [Citation(s) in RCA: 32] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2021] [Accepted: 11/30/2022] [Indexed: 12/23/2022]  Open
35
Steely CJ, Watkins WS, Baird L, Jorde LB. The mutational dynamics of short tandem repeats in large, multigenerational families. Genome Biol 2022;23:253. [PMID: 36510265 PMCID: PMC9743774 DOI: 10.1186/s13059-022-02818-4] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2022] [Accepted: 11/17/2022] [Indexed: 12/14/2022]  Open
36
Frontanilla TS, Valle-Silva G, Ayala J, Mendes-Junior CT. Open-Access Worldwide Population STR Database Constructed Using High-Coverage Massively Parallel Sequencing Data Obtained from the 1000 Genomes Project. Genes (Basel) 2022;13:genes13122205. [PMID: 36553472 PMCID: PMC9778533 DOI: 10.3390/genes13122205] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2022] [Revised: 11/13/2022] [Accepted: 11/21/2022] [Indexed: 11/27/2022]  Open
37
Assessing Sequence Variation and Genetic Diversity of Currently Untapped Y-STR Loci. FORENSIC SCIENCE INTERNATIONAL: REPORTS 2022. [DOI: 10.1016/j.fsir.2022.100298] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
38
Comparative analysis of microsatellites in coding regions provides insights into the adaptability of the giant panda, polar bear and brown bear. Genetica 2022;150:355-366. [DOI: 10.1007/s10709-022-00173-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Accepted: 09/13/2022] [Indexed: 11/27/2022]
39
Wang Z, Moffitt AB, Andrews P, Wigler M, Levy D. Accurate measurement of microsatellite length by disrupting its tandem repeat structure. Nucleic Acids Res 2022;50:e116. [PMID: 36095132 PMCID: PMC9723644 DOI: 10.1093/nar/gkac723] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2022] [Revised: 08/03/2022] [Accepted: 08/15/2022] [Indexed: 12/24/2022]  Open
40
Quinones-Valdez G, Fu T, Chan TW, Xiao X. scAllele: A versatile tool for the detection and analysis of variants in scRNA-seq. SCIENCE ADVANCES 2022;8:eabn6398. [PMID: 36054357 PMCID: PMC11636672 DOI: 10.1126/sciadv.abn6398] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2021] [Accepted: 07/19/2022] [Indexed: 05/12/2023]
41
Fang L, Liu Q, Monteys AM, Gonzalez-Alegre P, Davidson BL, Wang K. DeepRepeat: direct quantification of short tandem repeats on signal data from nanopore sequencing. Genome Biol 2022;23:108. [PMID: 35484600 PMCID: PMC9052667 DOI: 10.1186/s13059-022-02670-6] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2021] [Accepted: 04/08/2022] [Indexed: 12/12/2022]  Open
42
Wang H, Gao S, Liu Y, Wang P, Zhang Z, Chen D. A pipeline for effectively developing highly polymorphic simple sequence repeats markers based on multi-sample genomic data. Ecol Evol 2022;12:e8705. [PMID: 35342577 PMCID: PMC8928897 DOI: 10.1002/ece3.8705] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2021] [Revised: 01/25/2022] [Accepted: 02/15/2022] [Indexed: 01/24/2023]  Open
43
Analysis and comparison of the STR genotypes called with HipSTR, STRait Razor and toaSTR by using next generation sequencing data in a Brazilian population sample. Forensic Sci Int Genet 2022;58:102676. [DOI: 10.1016/j.fsigen.2022.102676] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2021] [Revised: 01/18/2022] [Accepted: 02/02/2022] [Indexed: 12/31/2022]
44
Chen J, Li F, Wang M, Li J, Marquez-Lago TT, Leier A, Revote J, Li S, Liu Q, Song J. BigFiRSt: A Software Program Using Big Data Technique for Mining Simple Sequence Repeats From Large-Scale Sequencing Data. Front Big Data 2022;4:727216. [PMID: 35118375 PMCID: PMC8805145 DOI: 10.3389/fdata.2021.727216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Accepted: 12/13/2021] [Indexed: 11/22/2022]  Open
45
Han J, Munro JE, Kocoski A, Barry AE, Bahlo M. Population-level genome-wide STR discovery and validation for population structure and genetic diversity assessment of Plasmodium species. PLoS Genet 2022;18:e1009604. [PMID: 35007277 PMCID: PMC8782505 DOI: 10.1371/journal.pgen.1009604] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2021] [Revised: 01/21/2022] [Accepted: 12/14/2021] [Indexed: 11/18/2022]  Open
46
Gall-Duncan T, Sato N, Yuen RKC, Pearson CE. Advancing genomic technologies and clinical awareness accelerates discovery of disease-associated tandem repeat sequences. Genome Res 2022;32:1-27. [PMID: 34965938 PMCID: PMC8744678 DOI: 10.1101/gr.269530.120] [Citation(s) in RCA: 52] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2020] [Accepted: 11/29/2021] [Indexed: 11/25/2022]
47
Rajabi F, Jabalameli N, Rezaei N. The Concept of Immunogenetics. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2022;1367:1-17. [DOI: 10.1007/978-3-030-92616-8_1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
48
Schröder C, Horsthemke B, Depienne C. GC-rich repeat expansions: associated disorders and mechanisms. MED GENET-BERLIN 2021;33:325-335. [PMID: 38835438 PMCID: PMC11006399 DOI: 10.1515/medgen-2021-2099] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2021] [Accepted: 11/12/2021] [Indexed: 06/06/2024]
49
Yang Q, Qian J, Shao C, Yao Y, Zhou Z, Xu H, Tang Q, Qian X, Xie J. Identification and Characterization of Nine Novel X-Chromosomal Short Tandem Repeats on Xp21.1, Xq21.31, and Xq23 Regions. Front Genet 2021;12:784605. [PMID: 34868274 PMCID: PMC8635773 DOI: 10.3389/fgene.2021.784605] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Accepted: 10/20/2021] [Indexed: 11/13/2022]  Open
50
An Introductory Overview of Open-Source and Commercial Software Options for the Analysis of Forensic Sequencing Data. Genes (Basel) 2021;12:genes12111739. [PMID: 34828345 PMCID: PMC8618049 DOI: 10.3390/genes12111739] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2021] [Revised: 10/27/2021] [Accepted: 10/27/2021] [Indexed: 12/30/2022]  Open
PrevPage 1 of 5 12345Next
© 2004-2025 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA