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Papo D, Buldú JM. Does the brain behave like a (complex) network? I. Dynamics. Phys Life Rev 2024; 48:47-98. [PMID: 38145591 DOI: 10.1016/j.plrev.2023.12.006] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Accepted: 12/10/2023] [Indexed: 12/27/2023]
Abstract
Graph theory is now becoming a standard tool in system-level neuroscience. However, endowing observed brain anatomy and dynamics with a complex network structure does not entail that the brain actually works as a network. Asking whether the brain behaves as a network means asking whether network properties count. From the viewpoint of neurophysiology and, possibly, of brain physics, the most substantial issues a network structure may be instrumental in addressing relate to the influence of network properties on brain dynamics and to whether these properties ultimately explain some aspects of brain function. Here, we address the dynamical implications of complex network, examining which aspects and scales of brain activity may be understood to genuinely behave as a network. To do so, we first define the meaning of networkness, and analyse some of its implications. We then examine ways in which brain anatomy and dynamics can be endowed with a network structure and discuss possible ways in which network structure may be shown to represent a genuine organisational principle of brain activity, rather than just a convenient description of its anatomy and dynamics.
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Affiliation(s)
- D Papo
- Department of Neuroscience and Rehabilitation, Section of Physiology, University of Ferrara, Ferrara, Italy; Center for Translational Neurophysiology, Fondazione Istituto Italiano di Tecnologia, Ferrara, Italy.
| | - J M Buldú
- Complex Systems Group & G.I.S.C., Universidad Rey Juan Carlos, Madrid, Spain
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2
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Ódor G, Deng S, Hartmann B, Kelling J. Synchronization dynamics on power grids in Europe and the United States. Phys Rev E 2022; 106:034311. [PMID: 36266845 DOI: 10.1103/physreve.106.034311] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Accepted: 08/16/2022] [Indexed: 06/16/2023]
Abstract
Dynamical simulation of the cascade failures on the Europe and United States (U.S.) high-voltage power grids has been done via solving the second-order Kuramoto equation. We show that synchronization transition happens by increasing the global coupling parameter K with metasatble states depending on the initial conditions so that hysteresis loops occur. We provide analytic results for the time dependence of frequency spread in the large-K approximation and by comparing it with numerics of d=2,3 lattices, we find agreement in the case of ordered initial conditions. However, different power-law (PL) tails occur, when the fluctuations are strong. After thermalizing the systems we allow a single line cut failure and follow the subsequent overloads with respect to threshold values T. The PDFs p(N_{f}) of the cascade failures exhibit PL tails near the synchronization transition point K_{c}. Near K_{c} the exponents of the PLs for the U.S. power grid vary with T as 1.4≤τ≤2.1, in agreement with the empirical blackout statistics, while on the Europe power grid we find somewhat steeper PLs characterized by 1.4≤τ≤2.4. Below K_{c}, we find signatures of T-dependent PLs, caused by frustrated synchronization, reminiscent of Griffiths effects. Here we also observe stability growth following the blackout cascades, similar to intentional islanding, but for K>K_{c} this does not happen. For T<T_{c}, bumps appear in the PDFs with large mean values, known as "dragon king" blackout events. We also analyze the delaying or stabilizing effects of instantaneous feedback or increased dissipation and show how local synchronization behaves on geographic maps.
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Affiliation(s)
- Géza Ódor
- Centre for Energy Research, Institute of Technical Physics and Materials Science, H-1525 Budapest, Hungary
| | - Shengfeng Deng
- Centre for Energy Research, Institute of Technical Physics and Materials Science, H-1525 Budapest, Hungary
| | - Bálint Hartmann
- Centre for Energy Research, Institute for Energy Security and Environmental Safety, H-1525 Budapest, Hungary
| | - Jeffrey Kelling
- Faculty of Natural Sciences, Technische Universität Chemnitz, 09111 Chemnitz, Germany
- Department of Information Services and Computing, Helmholtz-Zentrum Dresden-Rossendorf, 01314 Dresden, Germany
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Ódor G, Hartmann B. Power-Law Distributions of Dynamic Cascade Failures in Power-Grid Models. ENTROPY 2020; 22:e22060666. [PMID: 33286438 PMCID: PMC7517205 DOI: 10.3390/e22060666] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/07/2020] [Revised: 06/10/2020] [Accepted: 06/11/2020] [Indexed: 11/16/2022]
Abstract
Power-law distributed cascade failures are well known in power-grid systems. Understanding this phenomena has been done by various DC threshold models, self-tuned at their critical point. Here, we attempt to describe it using an AC threshold model, with a second-order Kuramoto type equation of motion of the power-flow. We have focused on the exploration of network heterogeneity effects, starting from homogeneous two-dimensional (2D) square lattices to the US power-grid, possessing identical nodes and links, to a realistic electric power-grid obtained from the Hungarian electrical database. The last one exhibits node dependent parameters, topologically marginally on the verge of robust networks. We show that too weak quenched heterogeneity, coming solely from the probabilistic self-frequencies of nodes (2D square lattice), is not sufficient for finding power-law distributed cascades. On the other hand, too strong heterogeneity destroys the synchronization of the system. We found agreement with the empirically observed power-law failure size distributions on the US grid, as well as on the Hungarian networks near the synchronization transition point. We have also investigated the consequence of replacing the usual Gaussian self-frequencies to exponential distributed ones, describing renewable energy sources. We found a drop in the steady state synchronization averages, but the cascade size distribution, both for the US and Hungarian systems, remained insensitive and have kept the universal tails, being characterized by the exponent τ≃1.8. We have also investigated the effect of an instantaneous feedback mechanism in case of the Hungarian power-grid.
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Ódor G. Robustness of Griffiths effects in homeostatic connectome models. Phys Rev E 2019; 99:012113. [PMID: 30780274 DOI: 10.1103/physreve.99.012113] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2018] [Indexed: 01/08/2023]
Abstract
I provide numerical evidence for the robustness of the Griffiths phase (GP) reported previously in dynamical threshold model simulations on a large human brain network with N=836733 connected nodes. The model, with equalized network sensitivity, is extended in two ways: introduction of refractory states or by randomized time-dependent thresholds. The nonuniversal power-law dynamics in an extended control parameter region survives these modifications for a short refractory state and weak disorder. In case of temporal disorder the GP shrinks and for stronger heterogeneity disappears, leaving behind a mean-field type of critical transition. Activity avalanche size distributions below the critical point decay faster than in the original model, but the addition of inhibitory interactions sets it back to the range of experimental values.
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Affiliation(s)
- Géza Ódor
- Research Institute for Technical Physics and Materials Science, Centre for Energy Research of the Hungarian Academy of Sciences, P.O. Box 49, H-1525 Budapest, Hungary
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5
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Ódor G, Hartmann B. Heterogeneity effects in power grid network models. Phys Rev E 2018; 98:022305. [PMID: 30253599 DOI: 10.1103/physreve.98.022305] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2018] [Indexed: 06/08/2023]
Abstract
We have compared the phase synchronization transition of the second-order Kuramoto model on two-dimensional (2D) lattices and on large, synthetic power grid networks, generated from real data. The latter are weighted, hierarchical modular networks. Due to the inertia the synchronization transitions are of first-order type, characterized by fast relaxation and hysteresis by varying the global coupling parameter K. Finite-size scaling analysis shows that there is no real phase transition in the thermodynamic limit, unlike in the mean-field model. The order parameter and its fluctuations depend on the network size without any real singular behavior. In case of power grids the phase synchronization breaks down at lower global couplings, than in case of 2D lattices of the same sizes, but the hysteresis is much narrower or negligible due to the low connectivity of the graphs. The temporal behavior of desynchronization avalanches after a sudden quench to low K values has been followed and duration distributions with power-law tails have been detected. This suggests rare region effects, caused by frozen disorder, resulting in heavy-tailed distributions, even without a self-organization mechanism as a consequence of a catastrophic drop event in the couplings.
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Affiliation(s)
- Géza Ódor
- Centre for Energy Research of the Hungarian Academy of Sciences, P. O. Box 49, H-1525 Budapest, Hungary
| | - Bálint Hartmann
- Centre for Energy Research of the Hungarian Academy of Sciences, P. O. Box 49, H-1525 Budapest, Hungary
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Nadini M, Sun K, Ubaldi E, Starnini M, Rizzo A, Perra N. Epidemic spreading in modular time-varying networks. Sci Rep 2018; 8:2352. [PMID: 29403006 PMCID: PMC5799280 DOI: 10.1038/s41598-018-20908-x] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2017] [Accepted: 01/17/2018] [Indexed: 11/09/2022] Open
Abstract
We investigate the effects of modular and temporal connectivity patterns on epidemic spreading. To this end, we introduce and analytically characterise a model of time-varying networks with tunable modularity. Within this framework, we study the epidemic size of Susceptible-Infected-Recovered, SIR, models and the epidemic threshold of Susceptible-Infected-Susceptible, SIS, models. Interestingly, we find that while the presence of tightly connected clusters inhibits SIR processes, it speeds up SIS phenomena. In this case, we observe that modular structures induce a reduction of the threshold with respect to time-varying networks without communities. We confirm the theoretical results by means of extensive numerical simulations both on synthetic graphs as well as on a real modular and temporal network.
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Affiliation(s)
- Matthieu Nadini
- Department of Mechanical and Aerospace Engineering, New York University Tandon School of Engineering, Brooklyn, NY, 11201, USA
- Dipartimento di Elettronica e Telecomunicazioni, Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129, Torino, Italy
| | - Kaiyuan Sun
- Laboratory for the Modeling of Biological and Socio-technical Systems, Northeastern University, Boston, MA, 02115, USA
| | - Enrico Ubaldi
- Institute for Scientific Interchange, ISI Foundation, Turin, Italy
| | - Michele Starnini
- Departament de Física Fondamental, Universitat de Barcelona, Martí i Franquès 1, 08028, Barcelona, Spain
- Universitat de Barcelona Institute of Complex Systems (UBICS), Universitat de Barcelona, Barcelona, Spain
| | - Alessandro Rizzo
- Dipartimento di Elettronica e Telecomunicazioni, Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129, Torino, Italy
| | - Nicola Perra
- Centre for Business Networks Analysis, University of Greenwich, London, UK.
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Papo D, Goñi J, Buldú JM. Editorial: On the relation of dynamics and structure in brain networks. CHAOS (WOODBURY, N.Y.) 2017; 27:047201. [PMID: 28456177 DOI: 10.1063/1.4981391] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Affiliation(s)
- David Papo
- SCALab, CNRS, Université Lille 3, Villeneuve d'Ascq, France
| | - Joaquin Goñi
- School of Engineering, Purdue University, West-Lafayette, Indiana 47907-2023, USA
| | - Javier M Buldú
- Complex, Systems Group, Universidad Rey Juan Carlos, Madrid, Spain
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Abstract
Extended numerical simulations of threshold models have been performed on a human brain network with N=836733 connected nodes available from the Open Connectome Project. While in the case of simple threshold models a sharp discontinuous phase transition without any critical dynamics arises, variable threshold models exhibit extended power-law scaling regions. This is attributed to fact that Griffiths effects, stemming from the topological or interaction heterogeneity of the network, can become relevant if the input sensitivity of nodes is equalized. I have studied the effects of link directness, as well as the consequence of inhibitory connections. Nonuniversal power-law avalanche size and time distributions have been found with exponents agreeing with the values obtained in electrode experiments of the human brain. The dynamical critical region occurs in an extended control parameter space without the assumption of self-organized criticality.
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Affiliation(s)
- Géza Ódor
- Institute of Technical Physics and Materials Science, Centre for Energy Research of the Hungarian Academy of Sciences, P.O. Box 49, H-1525 Budapest, Hungary
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Ódor G, Dickman R, Ódor G. Griffiths phases and localization in hierarchical modular networks. Sci Rep 2015; 5:14451. [PMID: 26399323 PMCID: PMC4585858 DOI: 10.1038/srep14451] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2015] [Accepted: 08/14/2015] [Indexed: 12/02/2022] Open
Abstract
We study variants of hierarchical modular network models suggested by Kaiser and Hilgetag [ Front. in Neuroinform., 4 (2010) 8] to model functional brain connectivity, using extensive simulations and quenched mean-field theory (QMF), focusing on structures with a connection probability that decays exponentially with the level index. Such networks can be embedded in two-dimensional Euclidean space. We explore the dynamic behavior of the contact process (CP) and threshold models on networks of this kind, including hierarchical trees. While in the small-world networks originally proposed to model brain connectivity, the topological heterogeneities are not strong enough to induce deviations from mean-field behavior, we show that a Griffiths phase can emerge under reduced connection probabilities, approaching the percolation threshold. In this case the topological dimension of the networks is finite, and extended regions of bursty, power-law dynamics are observed. Localization in the steady state is also shown via QMF. We investigate the effects of link asymmetry and coupling disorder, and show that localization can occur even in small-world networks with high connectivity in case of link disorder.
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Affiliation(s)
- Géza Ódor
- MTA-MFA-EK Research Institute for Technical Physics and Materials Science, H-1121 Budapest, P.O. Box 49, Hungary
| | - Ronald Dickman
- Departamento de Fisica and National Institute of Science and Technology of Complex Systems, ICEx, Universidade Federal de Minas Gerais, Caixa Postal 702, 30161-970, Belo Horizonte - Minas Gerais, Brazil
| | - Gergely Ódor
- Massachusetts Institute of Technology, 77 Massachusetts Avenue Cambridge, MA 02139-4307, USA
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Ódor G. Localization transition, Lifschitz tails, and rare-region effects in network models. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 90:032110. [PMID: 25314398 DOI: 10.1103/physreve.90.032110] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2014] [Indexed: 06/04/2023]
Abstract
Effects of heterogeneity in the suspected-infected-susceptible model on networks are investigated using quenched mean-field theory. The emergence of localization is described by the distributions of the inverse participation ratio and compared with the rare-region effects appearing in simulations and in the Lifschitz tails. The latter, in the linear approximation, is related to the spectral density of the Laplacian matrix and to the time dependent order parameter. I show that these approximations indicate correctly Griffiths phases both on regular one-dimensional lattices and on small-world networks exhibiting purely topological disorder. I discuss the localization transition that occurs on scale-free networks at γ=3 degree exponent.
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Affiliation(s)
- Géza Ódor
- Research Center for Natural Sciences, Hungarian Academy of Sciences, P.O. Box 49, H-1525 Budapest, Hungary
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