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Legault V, Pu Y, Weinans E, Cohen AA. Application of early warning signs to physiological contexts: a comparison of multivariate indices in patients on long-term hemodialysis. FRONTIERS IN NETWORK PHYSIOLOGY 2024; 4:1299162. [PMID: 38595863 PMCID: PMC11002238 DOI: 10.3389/fnetp.2024.1299162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/22/2023] [Accepted: 03/15/2024] [Indexed: 04/11/2024]
Abstract
Early warnings signs (EWSs) can anticipate abrupt changes in system state, known as "critical transitions," by detecting dynamic variations, including increases in variance, autocorrelation (AC), and cross-correlation. Numerous EWSs have been proposed; yet no consensus on which perform best exists. Here, we compared 15 multivariate EWSs in time series of 763 hemodialyzed patients, previously shown to present relevant critical transition dynamics. We calculated five EWSs based on AC, six on variance, one on cross-correlation, and three on AC and variance. We assessed their pairwise correlations, trends before death, and mortality predictive power, alone and in combination. Variance-based EWSs showed stronger correlations (r = 0.663 ± 0.222 vs. 0.170 ± 0.205 for AC-based indices) and a steeper increase before death. Two variance-based EWSs yielded HR95 > 9 (HR95 standing for a scale-invariant metric of hazard ratio), but combining them did not improve the area under the receiver-operating curve (AUC) much compared to using them alone (AUC = 0.798 vs. 0.796 and 0.791). Nevertheless, the AUC reached 0.825 when combining 13 indices. While some indicators did not perform overly well alone, their addition to the best performing EWSs increased the predictive power, suggesting that indices combination captures a broader range of dynamic changes occurring within the system. It is unclear whether this added benefit reflects measurement error of a unified phenomenon or heterogeneity in the nature of signals preceding critical transitions. Finally, the modest predictive performance and weak correlations among some indices call into question their validity, at least in this context.
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Affiliation(s)
- Véronique Legault
- Research Center of the Centre Hospitalier Universitaire de Sherbrooke, Sherbrooke, QC, Canada
| | - Yi Pu
- PRIMUS Research Group, Department of Family Medicine, University of Sherbrooke, Sherbrooke, QC, Canada
| | - Els Weinans
- Copernicus Institute of Sustainable Development, Environmental Science, Faculty of Geosciences, Utrecht University, Utrecht, Netherlands
| | - Alan A. Cohen
- Research Center of the Centre Hospitalier Universitaire de Sherbrooke, Sherbrooke, QC, Canada
- PRIMUS Research Group, Department of Family Medicine, University of Sherbrooke, Sherbrooke, QC, Canada
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2
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Song Y, Lian J, Wang K, Wen J, Luo Y. Changes in the cortical network during sleep stage transitions. J Neurosci Res 2023; 101:20-33. [PMID: 36148534 DOI: 10.1002/jnr.25125] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2021] [Revised: 09/04/2022] [Accepted: 09/05/2022] [Indexed: 11/07/2022]
Abstract
Sleep state transitions are closely related to insomnia, drowsiness, and sleep maintenance. However, how the cortical network varies during such a transition process remains unclear. Changes in the cortical interaction during the short-term process of sleep stage transitions were investigated. In all, 40 healthy young participants underwent overnight polysomnography. The phase transfer entropy of six frequency bands was obtained from 16 electroencephalography channels to assess the strength and direction of information flow between the cortical regions. Differences in the cortical network between the first and the last 10 s in a 40-s transition period across wakefulness, N1, N2, N3, and rapid eye movement were, respectively, studied. Various frequency bands exhibited different patterns during the sleep stage transitions. It was found that the mutual transitions between the sleep stages were not necessarily the opposite. More significant changes were observed in the sleep deepening process than in the process of sleep awakening. During sleep stage transitions, changes in the inflow and outflow strength of various cortical regions led to regional differences, but for the entire sleep progress, such an imbalance did not intensify, and a dynamic balance was instead observed. The detailed findings of variations in cortical interactions during sleep stage transition promote understanding of sleep mechanism, sleep process, and sleep function. Additionally, it is expected to provide helpful clues for sleep improvement, like reducing the time required to fall asleep and maintaining sleep depth.
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Affiliation(s)
- Yingjie Song
- School of Biomedical Engineering, Sun Yat-sen University, Guangzhou, China
| | - Jiakai Lian
- School of Biomedical Engineering, Sun Yat-sen University, Guangzhou, China
| | - Kejie Wang
- School of Biomedical Engineering, Sun Yat-sen University, Guangzhou, China
| | - Jinfeng Wen
- Psychology Department, Guangdong 999 Brain Hospital, Guangzhou, China
| | - Yuxi Luo
- School of Biomedical Engineering, Sun Yat-sen University, Guangzhou, China.,Key Laboratory of Sensing Technology and Biomedical Instruments of Guangdong Province, Sun Yat-sen University, Guangzhou, China
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Agrawal S, Kumar V, Singh V, Singh C, Singh A. A Review on Pathophysiological Aspects of Sleep Deprivation. CNS & NEUROLOGICAL DISORDERS DRUG TARGETS 2023; 22:1194-1208. [PMID: 35549867 DOI: 10.2174/1871527321666220512092718] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2021] [Revised: 12/03/2021] [Accepted: 01/16/2022] [Indexed: 11/22/2022]
Abstract
Sleep deprivation (SD) (also referred as insomnia) is a condition in which individuals fail to get enough sleep due to excessive yawning, facing difficulty to learn new concepts, experiencing forgetfulness as well as depressed mood. This could occur due to several possible reasons, including medications and stress (caused by shift work). Despite the fact that sleep is important for normal physiology, it currently affects millions of people around the world, especially the US (70 million) and Europe (45 million). Due to increased work demand nowadays, lots of people are experiencing sleep deprivation hence, this could be the reason for several car accidents followed by death and morbidity. This review highlighted the impact of SD on neurotransmitter release and functions, theories (Flip-flop theory, oxidative stress theory, neuroinflammation theory, neurotransmitter theory, and hormonal theory) associated with SD pathogenesis; apart from this, it also demonstrates the molecular pathways underlying SD (PI3K and Akt, NF-κB, Nrf2, and adenosine pathway. However, this study also elaborates on the SD-induced changes in the level of neurotransmitters, hormonal, and mitochondrial functions. Along with this, it also covers several molecular aspects associated with SD as well. Through this study, a link is made between SD and associated causes, which will further help to develop a potential therapeutic strategy against SD.
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Affiliation(s)
- Shelly Agrawal
- Department of Pharmacology, ISF College of Pharmacy, Moga-142001, Punjab, India
| | - Vishal Kumar
- Department of Pharmacology, ISF College of Pharmacy, Moga-142001, Punjab, India
| | - Vishesh Singh
- Department of Pharmaceutics, ISF College of Pharmacy, Moga-142001, Punjab, India
| | - Charan Singh
- Department of Pharmaceutics, ISF College of Pharmacy, Moga-142001, Punjab, India
| | - Arti Singh
- Department of Pharmacology, ISF College of Pharmacy, Moga-142001, Punjab, India
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Oro D, Freixas L. Flickering body temperature anticipates criticality in hibernation dynamics. ROYAL SOCIETY OPEN SCIENCE 2021; 8:201571. [PMID: 33614089 PMCID: PMC7890501 DOI: 10.1098/rsos.201571] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2020] [Accepted: 12/14/2020] [Indexed: 05/25/2023]
Abstract
Hibernation has been selected for increasing survival in harsh climatic environments. Seasonal variability in temperature may push the body temperatures of hibernating animals across boundaries of alternative states between euthermic temperature and torpor temperature, typical of either hibernation or summer dormancy. Nowadays, wearable electronics present a promising avenue to assess the occurrence of criticality in physiological systems, such as body temperature fluctuating between attractors of activity and hibernation. For this purpose, we deployed temperature loggers on two hibernating edible dormice for an entire year and under Mediterranean climate conditions. Highly stochastic body temperatures with sudden switches over time allowed us to assess the reliability of statistical leading indicators to anticipate tipping points when approaching a critical transition. Hibernation dynamics showed flickering, a phenomenon occurring when a system rapidly moves back and forth between two alternative attractors preceding the upcoming major regime shift. Flickering of body temperature increased when the system approached bifurcations, which were also anticipated by several metric- and model-based statistical indicators. Nevertheless, some indicators did not show a pattern in their response, which suggests that their performance varies with the dynamics of the biological system studied. Gradual changes in air temperature drove transient between states of hibernation and activity, and also drove hysteresis. For hibernating animals, hysteresis may increase resilience when ending hibernation earlier than the optimal time, which may occur in regions where temperatures are sharply rising, especially during winter. Temporal changes in early indicators of critical transitions in hibernation dynamics may help to understand the effects of climate on evolutionary life histories and the plasticity of hibernating organisms to cope with shortened hibernation due to global warming.
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Affiliation(s)
- Daniel Oro
- Theoretical and Computational Ecology Laboratory, CEAB Center for Advanced Studies (CSIC), Acces Cala Sant Francesc 14, 17300 Blanes, Spain
| | - Lídia Freixas
- Granollers Natural Sciences Museum, Francesc Macià 51, 08402 Granollers, Spain
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de Mooij SMM, Blanken TF, Grasman RPPP, Ramautar JR, Van Someren EJW, van der Maas HLJ. Dynamics of sleep: Exploring critical transitions and early warning signals. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2020; 193:105448. [PMID: 32304989 DOI: 10.1016/j.cmpb.2020.105448] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2019] [Revised: 03/12/2020] [Accepted: 03/13/2020] [Indexed: 06/11/2023]
Abstract
BACKGROUND AND OBJECTIVES In standard practice, sleep is classified into distinct stages by human observers according to specific rules as for instance specified in the AASM manual. We here show proof of principle for a conceptualization of sleep stages as attractor states in a nonlinear dynamical system in order to develop new empirical criteria for sleep stages. METHODS EEG (single channel) of two healthy sleeping participants was used to demonstrate this conceptualization. Firstly, distinct EEG epochs were selected, both detected by a MLR classifier and through manual scoring. Secondly, change point analysis was used to identify abrupt changes in the EEG signal. Thirdly, these detected change points were evaluated on whether they were preceded by early warning signals. RESULTS Multiple change points were identified in the EEG signal, mostly in interplay with N2. The dynamics before these changes revealed, for a part of the change points, indicators of generic early warning signals, characteristic of complex systems (e.g., ecosystems, climate, epileptic seizures, global finance systems). CONCLUSIONS The sketched new framework for studying critical transitions in sleep EEG might benefit the understanding of individual and pathological differences in the dynamics of sleep stage transitions. Formalising sleep as a nonlinear dynamical system can be useful for definitions of sleep quality, i.e. stability and accessibility of an equilibrium state, and disrupted sleep, i.e. constant shifting between instable sleep states.
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Affiliation(s)
| | - Tessa F Blanken
- Department of Sleep and Cognition, Netherlands Institute for Neuroscience (an institute of the Royal Netherlands Academy of Arts and Sciences), Amsterdam, the Netherlands
| | | | - Jennifer R Ramautar
- Department of Sleep and Cognition, Netherlands Institute for Neuroscience (an institute of the Royal Netherlands Academy of Arts and Sciences), Amsterdam, the Netherlands
| | - Eus J W Van Someren
- Department of Sleep and Cognition, Netherlands Institute for Neuroscience (an institute of the Royal Netherlands Academy of Arts and Sciences), Amsterdam, the Netherlands; Department of Psychiatry, Amsterdam Public Health Research Institute and Amsterdam Neuroscience research institute, Amsterdam UMC, Vrije Universiteit, the Netherlands; Department of Integrative Neurophysiology, Center for Neurogenomics and Cognitive Research (CNCR), Amsterdam Neuroscience, Vrije Universiteit Amsterdam, the Netherlands
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Wilkat T, Rings T, Lehnertz K. No evidence for critical slowing down prior to human epileptic seizures. CHAOS (WOODBURY, N.Y.) 2019; 29:091104. [PMID: 31575122 DOI: 10.1063/1.5122759] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2019] [Accepted: 08/23/2019] [Indexed: 06/10/2023]
Abstract
There is an ongoing debate whether generic early warning signals for critical transitions exist that can be applied across diverse systems. The human epileptic brain is often considered as a prototypical system, given the devastating and, at times, even life-threatening nature of the extreme event epileptic seizure. More than three decades of international effort has successfully identified predictors of imminent seizures. However, the suitability of typically applied early warning indicators for critical slowing down, namely, variance and lag-1 autocorrelation, for indexing seizure susceptibility is still controversially discussed. Here, we investigated long-term, multichannel recordings of brain dynamics from 28 subjects with epilepsy. Using a surrogate-based evaluation procedure of sensitivity and specificity of time-resolved estimates of early warning indicators, we found no evidence for critical slowing down prior to 105 epileptic seizures.
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Affiliation(s)
- Theresa Wilkat
- Department of Epileptology, University of Bonn Medical Centre, Venusberg-Campus 1, 53127 Bonn, Germany
| | - Thorsten Rings
- Department of Epileptology, University of Bonn Medical Centre, Venusberg-Campus 1, 53127 Bonn, Germany
| | - Klaus Lehnertz
- Department of Epileptology, University of Bonn Medical Centre, Venusberg-Campus 1, 53127 Bonn, Germany
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Abstract
Sleep and circadian rhythms are regulated across multiple functional, spatial and temporal levels: from genes to networks of coupled neurons and glial cells, to large scale brain dynamics and behaviour. The dynamics at each of these levels are complex and the interaction between the levels is even more so, so research have mostly focused on interactions within the levels to understand the underlying mechanisms—the so-called reductionist approach. Mathematical models were developed to test theories of sleep regulation and guide new experiments at each of these levels and have become an integral part of the field. The advantage of modelling, however, is that it allows us to simulate and test the dynamics of complex biological systems and thus provides a tool to investigate the connections between the different levels and study the system as a whole. In this paper I review key models of sleep developed at different physiological levels and discuss the potential for an integrated systems biology approach for sleep regulation across these levels. I also highlight the necessity of building mechanistic connections between models of sleep and circadian rhythms across these levels.
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Affiliation(s)
- Svetlana Postnova
- School of Physics, University of Sydney, Sydney 2006, NSW, Australia;
- Center of Excellence for Integrative Brain Function, University of Sydney, Sydney 2006, NSW, Australia
- Charles Perkins Center, University of Sydney, Sydney 2006, NSW, Australia
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Kim SH, Goh S, Han K, Kim JW, Choi M. Numerical study of entrainment of the human circadian system and recovery by light treatment. Theor Biol Med Model 2018; 15:5. [PMID: 29743086 PMCID: PMC5944165 DOI: 10.1186/s12976-018-0077-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2018] [Accepted: 04/23/2018] [Indexed: 11/26/2022] Open
Abstract
Background While the effects of light as a zeitgeber are well known, the way the effects are modulated by features of the sleep-wake system still remains to be studied in detail. Methods A mathematical model for disturbance and recovery of the human circadian system is presented. The model combines a circadian oscillator and a sleep-wake switch that includes the effects of orexin. By means of simulations, we characterize the period-locking zone of the model, where a stable 24-hour circadian rhythm exists, and the occurrence of circadian disruption due to both insufficient light and imbalance in orexin. We also investigate how daily bright light treatments of short duration can recover the normal circadian rhythm. Results It is found that the system exhibits continuous phase advance/delay at lower/higher orexin levels. Bright light treatment simulations disclose two optimal time windows, corresponding to morning and evening light treatments. Among the two, the morning light treatment is found effective in a wider range of parameter values, with shorter recovery time. Conclusions This approach offers a systematic way to determine the conditions under which circadian disruption occurs, and to evaluate the effects of light treatment. In particular, it could potentially offer a way to optimize light treatments for patients with circadian disruption, e.g., sleep and mood disorders, in clinical settings.
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Affiliation(s)
- Soon Ho Kim
- Department of Physics and Center for Theoretical Physics, Seoul National University, Gwanak-ro 1, Seoul, 08826, Korea
| | - Segun Goh
- Institut für Theoretische Physik II - Soft Matter, Heinrich-Heine- Universität Düsseldorf, Düsseldorf, D-40225, Germany
| | - Kyungreem Han
- Laboratory of Computational Biology, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, 20892, USA
| | - Jong Won Kim
- Department of Healthcare Information Technology, Inje University, Gimhae, 50834, Korea.
| | - MooYoung Choi
- Department of Physics and Center for Theoretical Physics, Seoul National University, Gwanak-ro 1, Seoul, 08826, Korea
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Chen M, Guo D, Xia Y, Yao D. Control of Absence Seizures by the Thalamic Feed-Forward Inhibition. Front Comput Neurosci 2017; 11:31. [PMID: 28491031 PMCID: PMC5405150 DOI: 10.3389/fncom.2017.00031] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2017] [Accepted: 04/10/2017] [Indexed: 11/17/2022] Open
Abstract
As a subtype of idiopathic generalized epilepsies, absence epilepsy is believed to be caused by pathological interactions within the corticothalamic (CT) system. Using a biophysical mean-field model of the CT system, we demonstrate here that the feed-forward inhibition (FFI) in thalamus, i.e., the pathway from the cerebral cortex (Ctx) to the thalamic reticular nucleus (TRN) and then to the specific relay nuclei (SRN) of thalamus that are also directly driven by the Ctx, may participate in controlling absence seizures. In particular, we show that increasing the excitatory Ctx-TRN coupling strength can significantly suppress typical electrical activities during absence seizures. Further, investigation demonstrates that the GABAA- and GABAB-mediated inhibitions in the TRN-SRN pathway perform combination roles in the regulation of absence seizures. Overall, these results may provide an insightful mechanistic understanding of how the thalamic FFI serves as an intrinsic regulator contributing to the control of absence seizures.
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Affiliation(s)
- Mingming Chen
- Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology, University of Electronic Science and Technology of ChinaChengdu, China
| | - Daqing Guo
- Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology, University of Electronic Science and Technology of ChinaChengdu, China.,Center for Information in BioMedicine, University of Electronic Science and Technology of ChinaChengdu, China
| | - Yang Xia
- Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology, University of Electronic Science and Technology of ChinaChengdu, China.,Center for Information in BioMedicine, University of Electronic Science and Technology of ChinaChengdu, China
| | - Dezhong Yao
- Key Laboratory for NeuroInformation of Ministry of Education, School of Life Science and Technology, University of Electronic Science and Technology of ChinaChengdu, China.,Center for Information in BioMedicine, University of Electronic Science and Technology of ChinaChengdu, China
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Roberts JA, Friston KJ, Breakspear M. Clinical Applications of Stochastic Dynamic Models of the Brain, Part II: A Review. BIOLOGICAL PSYCHIATRY: COGNITIVE NEUROSCIENCE AND NEUROIMAGING 2017. [DOI: 10.1016/j.bpsc.2016.12.009] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
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