1
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Tripathi R, Maurya KK, Kumar P, De B, Singh R. Coherent nonlinear optical response for high-intensity excitation. J Chem Phys 2025; 162:114111. [PMID: 40099732 DOI: 10.1063/5.0249809] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2024] [Accepted: 02/20/2025] [Indexed: 03/20/2025] Open
Abstract
The calculation of the coherent nonlinear response of a system is essential to correctly interpret results from advanced techniques such as two-dimensional coherent spectroscopy. Usually, even for the simplest systems, such calculations are either performed for low-intensity excitations where perturbative methods are valid and/or by assuming a simplified pulse envelope, such as a δ-function in time. Here, we use the phase-cycling method for the exact calculation of the nonlinear response without making the aforementioned approximations even for high-intensity excitation. We compare the simulation results to several experimental observations to prove the validity of these calculations. The saturation of the photon-echo signal from excitons in a semiconductor quantum well sample is measured. The excitation-intensity dependent measurement shows nonlinear contributions up to twelfth order. Intensity-dependent simulations reproduce this effect without explicitly considering higher-order interactions. In addition, we present simulation results that replicate previously reported experiments with high-intensity excitation of semiconductor quantum dots. By accurately reproducing a variety of phenomena such as higher-order contributions, switching of coherent signals, and changes in photon-echo transients, we prove the efficacy of the phase-cycling method to calculate the coherent nonlinear signal for high-intensity excitation. This method would be particularly useful for systems with multiple, well-separated peaks and/or large inhomogeneities.
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Affiliation(s)
- Rishabh Tripathi
- Department of Physics, Indian Institute of Science Education and Research Bhopal, Bhopal 462066, India
| | - Krishna K Maurya
- Department of Physics, Indian Institute of Science Education and Research Bhopal, Bhopal 462066, India
| | - Pradeep Kumar
- Department of Physics, Indian Institute of Science Education and Research Bhopal, Bhopal 462066, India
| | - Bhaskar De
- Department of Physics, Indian Institute of Science Education and Research Bhopal, Bhopal 462066, India
| | - Rohan Singh
- Department of Physics, Indian Institute of Science Education and Research Bhopal, Bhopal 462066, India
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2
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Novoderezhkin VI, Razjivin AP. Multiexciton spectra of molecular aggregates: application to photosynthetic antenna complexes. Phys Chem Chem Phys 2024; 26:23800-23810. [PMID: 39229788 DOI: 10.1039/d4cp02246g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/05/2024]
Abstract
We perform theoretical studies of nonlinear spectral responses of molecular aggregates upon multiple electronic excitations. It is shown that the transient absorption (TA) spectra exhibit gradual shifting to short wavelengths upon an increase in excitation energy accompanied by population of higher-order exciton manifolds. This transformation of the TA profile reflects a character of the exciton splitting and, therefore, is strongly dependent on the aggregate shape and size as well as on the exciton couplings and disorder of the site energies. The theory is applied for modeling of the intensity-dependent TA spectra of a light-harvesting LH1 antenna from a photosynthetic purple bacterium. Fitting of the data allowed verification of the exciton model of the complex (enabling us to differentiate between the correlated (elliptical) and uncorrelated energetic disorder). We found that the difference between the TA spectra corresponding to the absorption of one and two quanta suggests the presence of strong uncorrelated disorder (in agreement with earlier models of bacterial LH1/LH2 antennas). Nonlinear spectroscopy with multiple excitations may also be useful for exploring the exciton structure of other photosynthetic antennas and similar molecular systems.
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Affiliation(s)
- Vladimir I Novoderezhkin
- Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Leninskie Gory, 119992, Moscow, Russia.
| | - Andrei P Razjivin
- Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Leninskie Gory, 119992, Moscow, Russia.
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3
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Gharbi AM, Biswas DS, Crégut O, Malý P, Didier P, Klymchenko A, Léonard J. Exciton annihilation and diffusion length in disordered multichromophoric nanoparticles. NANOSCALE 2024; 16:11550-11563. [PMID: 38868990 DOI: 10.1039/d4nr00325j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2024]
Abstract
Efficient exciton transport is the essential property of natural and synthetic light-harvesting (LH) devices. Here we investigate exciton transport properties in LH organic polymer nanoparticles (ONPs) of 40 nm diameter. The ONPs are loaded with a rhodamine B dye derivative and bulky counterion, enabling dye loadings as high as 0.3 M, while preserving fluorescence quantum yields larger than 30%. We use time-resolved fluorescence spectroscopy to monitor exciton-exciton annihilation (EEA) kinetics within the ONPs dispersed in water. We demonstrate that unlike the common practice for photoluminescence investigations of EEA, the non-uniform intensity profile of the excitation light pulse must be taken into account to analyse reliably intensity-dependent population dynamics. Alternatively, a simple confocal detection scheme is demonstrated, which enables (i) retrieving the correct value for the bimolecular EEA rate which would otherwise be underestimated by a typical factor of three, and (ii) revealing minor EEA by-products otherwise unnoticed. Considering the ONPs as homogeneous rigid solutions of weakly interacting dyes, we postulate an incoherent exciton hoping mechanism to infer a diffusion constant exceeding 0.003 cm2 s-1 and a diffusion length as large as 70 nm. This work demonstrates the success of the present ONP design strategy at engineering efficient exciton transport in disordered multichromophoric systems.
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Affiliation(s)
| | | | - Olivier Crégut
- IPCMS, Université de Strasbourg - CNRS, Strasbourg, France.
| | - Pavel Malý
- Charles University, Prague, Czech Republic
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4
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Lüttig J, Mueller S, Malý P, Krich JJ, Brixner T. Higher-Order Multidimensional and Pump-Probe Spectroscopies. J Phys Chem Lett 2023; 14:7556-7573. [PMID: 37589504 DOI: 10.1021/acs.jpclett.3c01694] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/18/2023]
Abstract
Transient absorption and coherent two-dimensional spectroscopy are widely established methods for the investigation of ultrafast dynamics in quantum systems. Conventionally, they are interpreted in the framework of perturbation theory at the third order of interaction. Here, we discuss the potential of higher-(than-third-)order pump-probe and multidimensional spectroscopy to provide insight into excited multiparticle states and their dynamics. We focus on recent developments from our group. In particular, we demonstrate how phase cycling can be used in fluorescence-detected two-dimensional spectroscopy to isolate higher-order spectra that provide information about highly excited states such as the correlation of multiexciton states. We discuss coherently detected fifth-order 2D spectroscopy and its power to track exciton diffusion. Finally, we show how to extract higher-order signals even from ordinary pump-probe experiments, providing annihilation-free signals at high excitation densities and insight into multiexciton interactions.
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Affiliation(s)
- Julian Lüttig
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Stefan Mueller
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Pavel Malý
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
- Faculty of Mathematics and Physics, Charles University, Ke Karlovu 5, 121 16 Prague, Czech Republic
| | - Jacob J Krich
- Department of Physics, University of Ottawa, Ottawa K1N 6N5, Canada
- School of Electrical Engineering and Computer Science, University of Ottawa, Ottawa K1N 6N5, Canada
| | - Tobias Brixner
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
- Center for Nanosystems Chemistry (CNC), Universität Würzburg, Theodor-Boveri-Weg, 97074 Würzburg, Germany
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5
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Lüttig J, Rose PA, Malý P, Turkin A, Bühler M, Lambert C, Krich JJ, Brixner T. High-order pump-probe and high-order two-dimensional electronic spectroscopy on the example of squaraine oligomers. J Chem Phys 2023; 158:234201. [PMID: 37326161 DOI: 10.1063/5.0139090] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2022] [Accepted: 03/06/2023] [Indexed: 06/17/2023] Open
Abstract
Time-resolved spectroscopy is commonly used to study diverse phenomena in chemistry, biology, and physics. Pump-probe experiments and coherent two-dimensional (2D) spectroscopy have resolved site-to-site energy transfer, visualized electronic couplings, and much more. In both techniques, the lowest-order signal, in a perturbative expansion of the polarization, is of third order in the electric field, which we call a one-quantum (1Q) signal because in 2D spectroscopy it oscillates in the coherence time with the excitation frequency. There is also a two-quantum (2Q) signal that oscillates in the coherence time at twice the fundamental frequency and is fifth order in the electric field. We demonstrate that the appearance of the 2Q signal guarantees that the 1Q signal is contaminated by non-negligible fifth-order interactions. We derive an analytical connection between an nQ signal and (2n + 1)th-order contaminations of an rQ (with r < n) signal by studying Feynman diagrams of all contributions. We demonstrate that by performing partial integrations along the excitation axis in 2D spectra, we can obtain clean rQ signals free of higher-order artifacts. We exemplify the technique using optical 2D spectroscopy on squaraine oligomers, showing clean extraction of the third-order signal. We further demonstrate the analytical connection with higher-order pump-probe spectroscopy and compare both techniques experimentally. Our approach demonstrates the full power of higher-order pump-probe and 2D spectroscopy to investigate multi-particle interactions in coupled systems.
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Affiliation(s)
- Julian Lüttig
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Peter A Rose
- Department of Physics, University of Ottawa, Ottawa, Ontario K1N 6N5, Canada
| | - Pavel Malý
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
- Faculty of Mathematics and Physics, Charles University, Prague, Czech Republic
| | - Arthur Turkin
- Institut für Organische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Michael Bühler
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Christoph Lambert
- Institut für Organische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
- Center for Nanosystems Chemistry (CNC), Universität Würzburg, Theodor-Boveri-Weg, 97074 Würzburg, Germany
| | - Jacob J Krich
- Department of Physics, University of Ottawa, Ottawa, Ontario K1N 6N5, Canada
- School of Electrical Engineering and Computer Science, University of Ottawa, Ottawa, Ontario K1N 6N5, Canada
| | - Tobias Brixner
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
- Center for Nanosystems Chemistry (CNC), Universität Würzburg, Theodor-Boveri-Weg, 97074 Würzburg, Germany
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6
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Jayachandran A, Mueller S, Brixner T. Fluorescence-Detected Two-Quantum Photon Echoes via Cogwheel Phase Cycling. J Phys Chem Lett 2022; 13:11710-11719. [PMID: 36512681 DOI: 10.1021/acs.jpclett.2c03372] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Two-dimensional (2D) electronic spectroscopy can separate homogeneous and inhomogeneous broadening. While established methods usually probe a photon-echo signal, i.e., a third-order response, to access the homogeneous line width of singly excited states, the homogeneous line width of doubly excited states remained spectroscopically inaccessible. Here we demonstrate the acquisition of two-quantum (2Q) photon echoes using fluorescence-detected 2D spectroscopy. In these eighth-order signals, 2Q coherences are rephased with themselves, leading to line-narrowed 2Q-2Q 2D spectra. By using cogwheel phase cycling, adapted from nuclear magnetic resonance spectroscopy, we isolate the 2Q-2Q 2D spectra of a squaraine dimer and a squaraine polymer and verify the same selectivity of cogwheel phase cycling compared to traditional "nested" phase cycling. The observed difference, between the two systems, in the homogeneous line width of the biexciton can be rationalized as a signature of the interplay of exciton-exciton annihilation, exciton diffusion, and exciton delocalization.
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Affiliation(s)
- Ajay Jayachandran
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Stefan Mueller
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - Tobias Brixner
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
- Center for Nanosystems Chemistry (CNC), Universität Würzburg, Theodor-Boveri-Weg, 97074 Würzburg, Germany
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7
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Elvers I, Nguyen-Phan TC, Gardiner AT, Hunter CN, Cogdell RJ, Köhler J. Phasor Analysis Reveals Multicomponent Fluorescence Kinetics in the LH2 Complex from Marichromatium purpuratum. J Phys Chem B 2022; 126:10335-10346. [PMID: 36449272 DOI: 10.1021/acs.jpcb.2c04983] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]
Abstract
We investigated the fluorescence kinetics of LH2 complexes from Marichromatium purpuratum, the cryo-EM structure of which has been recently elucidated with 2.4 Å resolution. The experiments have been carried out as a function of the excitation density by varying both the excitation fluence and the repetition rate of the laser excitation. Instead of the usual multiexponential fitting procedure, we applied the less common phasor formalism for evaluating the transients because this allows for a model-free analysis of the data without a priori knowledge about the number of processes that contribute to a particular decay. For the various excitation conditions, this analysis reproduces consistently three lifetime components with decay times below 100 ps, 500 ps, and 730 ps, which were associated with the quenched state, singlet-triplet annihilation, and fluorescence decay, respectively. Moreover, it reveals that the number of decay components that contribute to the transients depends on whether the excitation wavelength is in resonance with the B800 BChl a molecules or with the carotenoids. Based on the mutual arrangement of the chromophores in their binding pockets, this leads us to conclude that the energy transfer pathways within the LH2 complex of this species differ significantly from each other for exciting either the B800 BChl molecules or the carotenoids. Finally, we speculate whether the illumination with strong laser light converts the LH2 complexes studied here into a quenched conformation that might be related to the development of the non-photochemical quenching mechanism that occurs in higher plants.
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Affiliation(s)
- Inga Elvers
- Spectroscopy of Soft Matter, University of Bayreuth, Universitätsstr. 30, D-95440 Bayreuth, Germany
| | - Tu C Nguyen-Phan
- School of Infection and Immunity, Glasgow University, Glasgow G12 8TA, U.K
| | - Alastair T Gardiner
- Laboratory of Anoxygenic Phototrophs, Institute of Microbiology, Czech Academy of Sciences, 379 81 Třeboň, Czech Republic
| | - C Neil Hunter
- School of Biosciences, University of Sheffield, Sheffield S10 2TN, U.K
| | - Richard J Cogdell
- School of Molecular Biosciences, Glasgow University, Glasgow G12 8QQ, U.K
| | - Jürgen Köhler
- Spectroscopy of Soft Matter, University of Bayreuth, Universitätsstr. 30, D-95440 Bayreuth, Germany.,Bayreuth Institute for Macromolecular Research (BIMF), University of Bayreuth, Universitätsstr. 30, D-95440 Bayreuth, Germany.,Bavarian Polymer Institute, University of Bayreuth, Universitätsstr. 30, D-95440 Bayreuth, Germany
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8
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Exact simulation of pigment-protein complexes unveils vibronic renormalization of electronic parameters in ultrafast spectroscopy. Nat Commun 2022; 13:2912. [PMID: 35614049 PMCID: PMC9133012 DOI: 10.1038/s41467-022-30565-4] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2022] [Accepted: 05/04/2022] [Indexed: 12/04/2022] Open
Abstract
The primary steps of photosynthesis rely on the generation, transport, and trapping of excitons in pigment-protein complexes (PPCs). Generically, PPCs possess highly structured vibrational spectra, combining many discrete intra-pigment modes and a quasi-continuous of protein modes, with vibrational and electronic couplings of comparable strength. The intricacy of the resulting vibronic dynamics poses significant challenges in establishing a quantitative connection between spectroscopic data and underlying microscopic models. Here we show how to address this challenge using numerically exact simulation methods by considering two model systems, namely the water-soluble chlorophyll-binding protein of cauliflower and the special pair of bacterial reaction centers. We demonstrate that the inclusion of the full multi-mode vibronic dynamics in numerical calculations of linear spectra leads to systematic and quantitatively significant corrections to electronic parameter estimation. These multi-mode vibronic effects are shown to be relevant in the longstanding discussion regarding the origin of long-lived oscillations in multidimensional nonlinear spectra. Multimode vibronic mixing in model photosynthetic systems revealed by numerically exact simulations is shown to strongly modify linear and non-linear optical responses and facilitate the persistence of coherent dynamics.
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9
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Bressan G, Jirasek M, Roy P, Anderson HL, Meech SR, Heisler IA. Population and Coherence Dynamics in Large Conjugated Porphyrin Nanorings. Chem Sci 2022; 13:9624-9636. [PMID: 36091893 PMCID: PMC9400675 DOI: 10.1039/d2sc01971j] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2022] [Accepted: 07/12/2022] [Indexed: 11/28/2022] Open
Abstract
In photosynthesis, nature exploits the distinctive electronic properties of chromophores arranged in supramolecular rings for efficient light harvesting. Among synthetic supramolecular cyclic structures, porphyrin nanorings have attracted considerable attention as they have a resemblance to naturally occurring light-harvesting structures but offer the ability to control ring size and the level of disorder. Here, broadband femtosecond transient absorption spectroscopy, with pump pulses in resonance with either the high or the low energy sides of the inhomogeneously broadened absorption spectrum, is used to study the population dynamics and ground and excited state vibrational coherence in large porphyrin nanorings. A series of fully conjugated, alkyne bridged, nanorings constituted of between ten and forty porphyrin units is studied. Pump-wavelength dependent fast spectral evolution is found. A fast rise or decay of the stimulated emission is found when large porphyrin nanorings are excited on, respectively, the high or low energy side of the absorption spectrum. Such dynamics are consistent with the hypothesis of a variation in transition dipole moment across the inhomogeneously broadened ground state ensemble. The observed dynamics indicate the interplay of nanoring conformation and oscillator strength. Oscillatory dynamics on the sub-ps time domain are observed in both pumping conditions. A combined analysis of the excitation wavelength-dependent transient spectra along with the amplitude and phase evolution of the oscillations allows assignment to vibrational wavepackets evolving on either ground or excited states electronic potential energy surfaces. Even though porphyrin nanorings support highly delocalized electronic wavefunctions, with coherence length spanning tens of chromophores, the measured vibrational coherences remain localised on the monomers. The main contributions to the beatings are assigned to two vibrational modes localised on the porphyrin cores: a Zn–N stretching mode and a skeletal methinic/pyrrolic C–C stretching and in-plane bending mode. Pump wavelength-dependent, ultrafast excited state dynamics arising from inhomogeneous broadening and ground and excited state nuclear wavepackets were observed for a series of Zn porphyrin nanorings made of 10 to 40 repeating units.![]()
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Affiliation(s)
- Giovanni Bressan
- School of Chemistry Norwich Research Park, University of East Anglia Norwich NR4 7TJ UK
| | - Michael Jirasek
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory Oxford OX1 3TA UK
| | - Palas Roy
- School of Chemistry Norwich Research Park, University of East Anglia Norwich NR4 7TJ UK
| | - Harry L Anderson
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory Oxford OX1 3TA UK
| | - Stephen R Meech
- School of Chemistry Norwich Research Park, University of East Anglia Norwich NR4 7TJ UK
| | - Ismael A Heisler
- Instituto de Física, Universidade Federal do Rio Grande do Sul Avenida Bento Gonçalves, 9500, CEP 91501-970 Porto Alegre Brazil
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10
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Abstract
Numerous linear and non-linear spectroscopic techniques have been developed to elucidate structural and functional information of complex systems ranging from natural systems, such as proteins and light-harvesting systems, to synthetic systems, such as solar cell materials and light-emitting diodes. The obtained experimental data can be challenging to interpret due to the complexity and potential overlapping spectral signatures. Therefore, computational spectroscopy plays a crucial role in the interpretation and understanding of spectral observables of complex systems. Computational modeling of various spectroscopic techniques has seen significant developments in the past decade, when it comes to the systems that can be addressed, the size and complexity of the sample types, the accuracy of the methods, and the spectroscopic techniques that can be addressed. In this Perspective, I will review the computational spectroscopy methods that have been developed and applied for infrared and visible spectroscopies in the condensed phase. I will discuss some of the questions that this has allowed answering. Finally, I will discuss current and future challenges and how these may be addressed.
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Affiliation(s)
- Thomas L C Jansen
- Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
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11
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The Relationship between the Spatial Arrangement of Pigments and Exciton Transition Moments in Photosynthetic Light-Harvesting Complexes. Int J Mol Sci 2021; 22:ijms221810031. [PMID: 34576194 PMCID: PMC8470053 DOI: 10.3390/ijms221810031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Revised: 09/10/2021] [Accepted: 09/13/2021] [Indexed: 11/16/2022] Open
Abstract
Considering bacteriochlorophyll molecules embedded in the protein matrix of the light-harvesting complexes of purple bacteria (known as LH2 and LH1-RC) as examples of systems of interacting pigment molecules, we investigated the relationship between the spatial arrangement of the pigments and their exciton transition moments. Based on the recently reported crystal structures of LH2 and LH1-RC and the outcomes of previous theoretical studies, as well as adopting the Frenkel exciton Hamiltonian for two-level molecules, we performed visualizations of the LH2 and LH1 exciton transition moments. To make the electron transition moments in the exciton representation invariant with respect to the position of the system in space, a system of pigments must be translated to the center of mass before starting the calculations. As a result, the visualization of the transition moments for LH2 provided the following pattern: two strong transitions were outside of LH2 and the other two were perpendicular and at the center of LH2. The antenna of LH1-RC was characterized as having the same location of the strongest moments in the center of the complex, exactly as in the B850 ring, which actually coincides with the RC. Considering LH2 and LH1 as supermolecules, each of which has excitation energies and corresponding transition moments, we propose that the outer transitions of LH2 can be important for inter-complex energy exchange, while the inner transitions keep the energy in the complex; moreover, in the case of LH1, the inner transitions increased the rate of antenna-to-RC energy transfer.
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12
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Ultrafast spectroscopic investigation of discrete co-assemblies of a Zn-porphyrin–polymer conjugate with a hexapyridyl template. Chem Phys Lett 2021. [DOI: 10.1016/j.cplett.2021.138736] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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13
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Thyrhaug E, Schröter M, Bukartė E, Kühn O, Cogdell R, Hauer J, Zigmantas D. Intraband dynamics and exciton trapping in the LH2 complex of Rhodopseudomonas acidophila. J Chem Phys 2021; 154:045102. [PMID: 33514092 DOI: 10.1063/5.0033802] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Over the last several decades, the light-harvesting protein complexes of purple bacteria have been among the most popular model systems for energy transport in excitonic systems in the weak and intermediate intermolecular coupling regime. Despite this extensive body of scientific work, significant questions regarding the excitonic states and the photo-induced dynamics remain. Here, we address the low-temperature electronic structure and excitation dynamics in the light-harvesting complex 2 of Rhodopseudomonas acidophila by two-dimensional electronic spectroscopy. We find that, although at cryogenic temperature energy relaxation is very rapid, exciton mobility is limited over a significant range of excitation energies. This points to the presence of a sub-200 fs, spatially local energy-relaxation mechanism and suggests that local trapping might contribute substantially more in cryogenic experiments than under physiological conditions where the thermal energy is comparable to or larger than the static disorder.
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Affiliation(s)
- Erling Thyrhaug
- Dynamical Spectroscopy, Department of Chemistry, Technical University of Munich, Lichtenbergstraße 4, 85748 Garching b. Munich, Germany
| | - Marco Schröter
- Chemical Physics, Department of Chemistry, Lund University, P.O. Box 124, SE-22100 Lund, Sweden
| | - Eglė Bukartė
- Chemical Physics, Department of Chemistry, Lund University, P.O. Box 124, SE-22100 Lund, Sweden
| | - Oliver Kühn
- Institute of Physics, University of Rostock, Albert Einstein Straße 23-24, 18059 Rostock, Germany
| | - Richard Cogdell
- Institute of Molecular, Cell and Systems Biology, University of Glasgow, Room 402 Davidson Building, Glasgow G12 8QQ, Scotland
| | - Jürgen Hauer
- Dynamical Spectroscopy, Department of Chemistry, Technical University of Munich, Lichtenbergstraße 4, 85748 Garching b. Munich, Germany
| | - Donatas Zigmantas
- Chemical Physics, Department of Chemistry, Lund University, P.O. Box 124, SE-22100 Lund, Sweden
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14
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Wei YC, Shen SW, Wu CH, Ho SY, Zhang Z, Wu CI, Chou PT. Through-Space Exciton Delocalization in Segregated HJ-Crystalline Molecular Aggregates. J Phys Chem A 2021; 125:943-953. [DOI: 10.1021/acs.jpca.0c09075] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Yu-Chen Wei
- Department of Chemistry, National Taiwan University, Taipei, 10617 Taiwan, ROC
| | - Shin-Wei Shen
- Graduate Institute of Photonics and Optoelectronics, National Taiwan University, Taipei, 10617 Taiwan, ROC
| | - Cheng-Ham Wu
- Department of Chemistry, National Taiwan University, Taipei, 10617 Taiwan, ROC
| | - Ssu-Yu Ho
- Department of Chemistry, National Taiwan University, Taipei, 10617 Taiwan, ROC
| | - Zhiyun Zhang
- Key Laboratory for Advanced Materials and Institute of Fine Chemicals, East China University of Science & Technology, Shanghai 200237, P. R. China
| | - Chih-I Wu
- Graduate Institute of Photonics and Optoelectronics, National Taiwan University, Taipei, 10617 Taiwan, ROC
| | - Pi-Tai Chou
- Department of Chemistry, National Taiwan University, Taipei, 10617 Taiwan, ROC
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15
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Sardjan AS, Westerman FP, Ogilvie JP, Jansen TLC. Observation of Ultrafast Coherence Transfer and Degenerate States with Polarization-Controlled Two-Dimensional Electronic Spectroscopy. J Phys Chem B 2020; 124:9420-9427. [PMID: 32990439 PMCID: PMC7586392 DOI: 10.1021/acs.jpcb.0c08126] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
![]()
Optical
spectroscopy is a powerful tool to interrogate quantum
states of matter. We present simulation results for the cross-polarized
two-dimensional electronic spectra of the light-harvesting system
LH2 of purple bacteria. We identify a spectral feature on the diagonal,
which we assign to ultrafast coherence transfer between degenerate
states. The implication for the interpretation of previous experiments
on different systems and the potential use of this feature are discussed.
In particular, we foresee that this kind of feature will be useful
for identifying mixed degenerate states and for identifying the origin
of symmetry breaking disorder in systems like LH2. Furthermore, this
may help identify both vibrational and electronic states in biological
systems such as proteins and solid-state materials such as hybrid
perovskites.
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Affiliation(s)
- Andy S Sardjan
- Zernike Institute for Advanced Materials, University of Groningen, 9747 AG Groningen, The Netherlands
| | - Floris P Westerman
- Zernike Institute for Advanced Materials, University of Groningen, 9747 AG Groningen, The Netherlands
| | - Jennifer P Ogilvie
- Department of Physics, University of Michigan, Ann Arbor, Michigan 48109, United States
| | - Thomas L C Jansen
- Zernike Institute for Advanced Materials, University of Groningen, 9747 AG Groningen, The Netherlands
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16
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Heshmatpour C, Malevich P, Plasser F, Menger M, Lambert C, Šanda F, Hauer J. Annihilation Dynamics of Molecular Excitons Measured at a Single Perturbative Excitation Energy. J Phys Chem Lett 2020; 11:7776-7781. [PMID: 32842744 DOI: 10.1021/acs.jpclett.0c02141] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Exciton-exciton annihilation (EEA) is a ubiquitous phenomenon, which may limit the efficiency of photovoltaic devices. Conventional methods of determining EEA time scales rely on measuring the intensity dependence of third-order signals. In this work, we directly extract the annihilation rate of molecular excitons in a covalently joined molecular trimer without the need to perform and analyze intensity dependent data by employing fifth-order coherent optical spectroscopy signals emitted into ±2k⃗1 ∓ 2k⃗2 + k⃗3 phase matching directions. Measured two-dimensional line shapes and their time traces are analyzed in the framework of the many-body version of the Frenkel exciton model, extended to incorporate annihilation dynamics. Combining double-sided Feynman diagrams with explicit simulations of the fifth-order response, we identify a single peak as a direct reporter of EEA. We retrieve an annihilation time of 30 fs for the investigated squaraine trimer.
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Affiliation(s)
- C Heshmatpour
- Institute of Physics, Faculty of Mathematics and Physics, Charles University, Ke Karlovu 5, Prague 121 16, Czech Republic
- Professur für Dynamische Spektroskopien, Fakultät für Chemie, Technische Universität München, Lichtenbergstrasse 4, D-85748, Garching b. München, Germany
| | - P Malevich
- Professur für Dynamische Spektroskopien, Fakultät für Chemie, Technische Universität München, Lichtenbergstrasse 4, D-85748, Garching b. München, Germany
| | - F Plasser
- Department of Chemistry, Loughborough University, Loughborough LE11 3TU, United Kingdom
| | - M Menger
- Faculty of Science and Engineering, Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747AG Groningen, The Netherlands
| | - C Lambert
- Institut für Organische Chemie, Center for Nanosystems Chemistry, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
| | - F Šanda
- Institute of Physics, Faculty of Mathematics and Physics, Charles University, Ke Karlovu 5, Prague 121 16, Czech Republic
| | - J Hauer
- Professur für Dynamische Spektroskopien, Fakultät für Chemie, Technische Universität München, Lichtenbergstrasse 4, D-85748, Garching b. München, Germany
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17
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Uragami C, Sato H, Yukihira N, Fujiwara M, Kosumi D, Gardiner AT, Cogdell RJ, Hashimoto H. Photoprotective mechanisms in the core LH1 antenna pigment-protein complex from the purple photosynthetic bacterium, Rhodospirillum rubrum. J Photochem Photobiol A Chem 2020. [DOI: 10.1016/j.jphotochem.2020.112628] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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18
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Niedzwiedzki DM, Swainsbury DJK, Hunter CN. Carotenoid-to-(bacterio)chlorophyll energy transfer in LH2 antenna complexes from Rba. sphaeroides reconstituted with non-native (bacterio)chlorophylls. PHOTOSYNTHESIS RESEARCH 2020; 144:155-169. [PMID: 31350671 PMCID: PMC7203092 DOI: 10.1007/s11120-019-00661-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2019] [Accepted: 07/16/2019] [Indexed: 05/04/2023]
Abstract
Six variants of the LH2 antenna complex from Rba. sphaeroides, comprising the native B800-B850, B800-free LH2 (B850) and four LH2s with various (bacterio)chlorophylls reconstituted into the B800 site, have been investigated with static and time-resolved optical spectroscopies at room temperature and at 77 K. The study particularly focused on how reconstitution of a non-native (bacterio)chlorophylls affects excitation energy transfer between the naturally bound carotenoid spheroidene and artificially substituted pigments in the B800 site. Results demonstrate there is no apparent trend in the overall energy transfer rate from spheroidene to B850 bacteriochlorophyll a; however, a trend in energy transfer rate from the spheroidene S1 state to Qy of the B800 (bacterio)chlorophylls is noticeable. These outcomes were applied to test the validity of previously proposed energy values of the spheroidene S1 state, supporting a value in the vicinity of 13,400 cm-1 (746 nm).
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Affiliation(s)
- Dariusz M Niedzwiedzki
- Center for Solar Energy and Energy Storage, Washington University, St. Louis, MO, 63130, USA.
- Department of Energy, Environmental & Chemical Engineering, Washington University, St. Louis, MO, 63130, USA.
| | - David J K Swainsbury
- Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, S10 2TN, UK
| | - C Neil Hunter
- Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, S10 2TN, UK
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19
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Kühn O, Mančal T, Pullerits T. Interpreting Fluorescence Detected Two-Dimensional Electronic Spectroscopy. J Phys Chem Lett 2020; 11:838-842. [PMID: 32024369 DOI: 10.1021/acs.jpclett.9b03851] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Affiliation(s)
- Oliver Kühn
- Institute of Physics , University of Rostock , Albert Einstein Strasse 23-24 , 18059 Rostock , Germany
| | - Tomáš Mančal
- Faculty of Mathematics and Physics , Charles University in Prague , Ke Karlovu 5 , CZ-121 16 Prague 2, Czech Republic
| | - Tõnu Pullerits
- Department of Chemical Physics and NanoLund , Lund University , P.O. Box 124, 22100 Lund , Sweden
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20
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Heshmatpour C, Hauer J, Šanda F. Interplay of exciton annihilation and transport in fifth order electronic spectroscopy. Chem Phys 2020. [DOI: 10.1016/j.chemphys.2019.110433] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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21
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Kunsel T, Tiwari V, Matutes YA, Gardiner AT, Cogdell RJ, Ogilvie JP, Jansen TLC. Simulating Fluorescence-Detected Two-Dimensional Electronic Spectroscopy of Multichromophoric Systems. J Phys Chem B 2019; 123:394-406. [PMID: 30543283 PMCID: PMC6345114 DOI: 10.1021/acs.jpcb.8b10176] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2018] [Indexed: 11/28/2022]
Abstract
We present a theory for modeling fluorescence-detected two-dimensional electronic spectroscopy of multichromophoric systems. The theory is tested by comparison of the predicted spectra of the light-harvesting complex LH2 with experimental data. A qualitative explanation of the strong cross-peaks as compared to conventional two-dimensional electronic spectra is given. The strong cross-peaks are attributed to the clean ground-state signal that is revealed when the annihilation of exciton pairs created on the same LH2 complex cancels oppositely signed signals from the doubly excited state. This annihilation process occurs much faster than the nonradiative relaxation. Furthermore, the line shape difference is attributed to slow dynamics, exciton delocalization within the bands, and intraband exciton-exciton annihilation. This is in line with existing theories presented for model systems. We further propose the use of time-resolved fluorescence-detected two-dimensional spectroscopy to study state-resolved exciton-exciton annihilation.
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Affiliation(s)
- Tenzin Kunsel
- Zernike
Institute for Advanced Materials, University
of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Vivek Tiwari
- Department
of Physics, University of Michigan, Ann Arbor, Michigan 48109, United States
| | - Yassel Acosta Matutes
- Department
of Physics, University of Michigan, Ann Arbor, Michigan 48109, United States
| | | | - Richard J. Cogdell
- Institute
for Molecular Biology, University of Glasgow, Glasgow G12 8TA, U.K.
| | - Jennifer P. Ogilvie
- Department
of Physics, University of Michigan, Ann Arbor, Michigan 48109, United States
| | - Thomas L. C. Jansen
- Zernike
Institute for Advanced Materials, University
of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
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22
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Schröter M, Alcocer MJP, Cogdell RJ, Kühn O, Zigmantas D. Origin of the Two Bands in the B800 Ring and Their Involvement in the Energy Transfer Network of Allochromatium vinosum. J Phys Chem Lett 2018; 9:1340-1345. [PMID: 29488385 DOI: 10.1021/acs.jpclett.8b00438] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Bacterial photosynthesis features robust and adaptable energy-harvesting processes in which light-harvesting proteins play a crucial role. The peripheral light-harvesting complex of the purple bacterium Allochromatium vinosum is particularly distinct, featuring a double peak structure in its B800 absorption band. Two hypotheses-not necessarily mutually exclusive-concerning the origin of this splitting have been proposed; either two distinct B800 bacteriochlorophyll site energies are involved, or an excitonic dimerization of bacteriochlorophylls within the B800 ring takes place. Through the use of two-dimensional electronic spectroscopy, we present unambiguous evidence that excitonic interaction shapes the split band. We further identify and characterize all of the energy transfer pathways within this complex by using a global kinetic fitting procedure. Our approach demonstrates how the combination of two-dimensional spectral resolution and self-consistent fitting allows for extraction of information on light-harvesting processes, which would otherwise be inaccessible due to signal congestion.
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Affiliation(s)
- Marco Schröter
- Institute of Physics , University of Rostock , Albert-Einstein-Straße 23-24 , 18059 Rostock , Germany
- Chemical Physics , Lund University , Box 124, 22100 Lund , Sweden
| | | | - Richard J Cogdell
- Institute of Molecular, Cell and Systems Biology, College of Medical, Veterinary and Life Sciences , University of Glasgow , Glasgow G12 8QQ , United Kingdom
| | - Oliver Kühn
- Institute of Physics , University of Rostock , Albert-Einstein-Straße 23-24 , 18059 Rostock , Germany
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23
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Kübel J, Wächtler M, Dietzek B. Excitation Power Modulates Energy-Transfer Dynamics in a Supramolecular Ru II -Fe II -Ru II Triad. Chemphyschem 2017; 18:2899-2907. [PMID: 28799732 DOI: 10.1002/cphc.201700710] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2017] [Indexed: 11/09/2022]
Abstract
Multichromophoric arrays are key to light harvesting in natural and artificial photosynthesis. A trinuclear, symmetric RuII -FeII -RuII triad may resemble a light-harvesting model system in which excitation energy from donor units (Ru-terpyridine fragments) is efficiently transferred to the acceptor (the Fe-terpyridine fragment). The photoinduced dynamics after simultaneous excitation of more than a single chromophoric unit (donor/acceptor) at varying excitation fluence is investigated in this contribution. Data suggests that energy transfer is decelerated if the acceptor states (on the FeII unit) are not depopulated fast enough. As a consequence, the lifetime of a high-lying excited state (centered on either of the RuII units) is prolonged. A kinetic model is suggested to account for this effect. Although the proposed model is specifically adopted to account for the experimental data reported here, it might be generalized to other situations in which multiple energy or electron donors are covalently linked to a single acceptor site, a situation of interest in contemporary artificial photosynthesis.
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Affiliation(s)
- Joachim Kübel
- Research Department Functional Interfaces, Leibniz Institute of Photonic Technology (IPHT) Jena e.V., Albert-Einstein-Str. 9, 07745, Jena, Germany.,Institute of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University Jena, Helmholtzweg 4, 07743, Jena, Germany.,Department of Chemistry and Molecular Biology, University of Gothenburg, 40530, Gothenburg, Sweden
| | - Maria Wächtler
- Research Department Functional Interfaces, Leibniz Institute of Photonic Technology (IPHT) Jena e.V., Albert-Einstein-Str. 9, 07745, Jena, Germany
| | - Benjamin Dietzek
- Research Department Functional Interfaces, Leibniz Institute of Photonic Technology (IPHT) Jena e.V., Albert-Einstein-Str. 9, 07745, Jena, Germany.,Institute of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University Jena, Helmholtzweg 4, 07743, Jena, Germany.,Center for Energy and Environmental Chemistry (CEEC), Friedrich Schiller University Jena, Philosophenweg 7, 07743, Jena, Germany
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24
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Jana B, Ghosh A, Patra A. Photon Harvesting in Conjugated Polymer-Based Functional Nanoparticles. J Phys Chem Lett 2017; 8:4608-4620. [PMID: 28853893 DOI: 10.1021/acs.jpclett.7b01936] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
The design of new generation light-harvesting systems based on conjugated polymer nanoparticles (PNPs) is an emerging field of research to convert solar energy into renewable energy. In this Perspective, we focus on the understanding of the light harvesting processes like exciton dynamics, energy transfer, antenna effect, charge carrier dynamics, and other related processes of conjugated polymer-based functional nanomaterials. Spectroscopic investigations unveil the rotational dynamics of the dye molecules inside of PNPs and exciton dynamics of the self-assembled structures. A detailed understanding of the cascade energy transfer for white light and singlet oxygen generation in multiple fluorophores containing a PNP system by time-resolved spectroscopy is highlighted. Finally, ultrafast spectroscopic investigations provide direct insight into the impacts of electron and hole transfer at the interface in the hybrid materials for photocatalysis and photocurrent generation to construct efficient light-harvesting systems.
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Affiliation(s)
- Bikash Jana
- Department of Materials Science, Indian Association for the Cultivation of Science , Jadavpur, Kolkata 700032, India
| | - Arnab Ghosh
- Department of Materials Science, Indian Association for the Cultivation of Science , Jadavpur, Kolkata 700032, India
| | - Amitava Patra
- Department of Materials Science, Indian Association for the Cultivation of Science , Jadavpur, Kolkata 700032, India
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25
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26
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Yoneda Y, Katayama T, Nagasawa Y, Miyasaka H, Umena Y. Dynamics of Excitation Energy Transfer Between the Subunits of Photosystem II Dimer. J Am Chem Soc 2016; 138:11599-605. [DOI: 10.1021/jacs.6b04316] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Yusuke Yoneda
- Graduate
School of Engineering Science, Osaka University, Toyonaka, Osaka560-8531, Japan
| | - Tetsuro Katayama
- Graduate
School of Engineering Science, Osaka University, Toyonaka, Osaka560-8531, Japan
| | - Yutaka Nagasawa
- Graduate
School of Engineering Science, Osaka University, Toyonaka, Osaka560-8531, Japan
- College
of Life Science, Ritsumeikan University, Kusatsu, Shiga 525-8577, Japan
- PRESTO, Japan Science and Technology Agency (JST), Kawaguchi, Saitama 332-0012, Japan
| | - Hiroshi Miyasaka
- Graduate
School of Engineering Science, Osaka University, Toyonaka, Osaka560-8531, Japan
| | - Yasufumi Umena
- Research
Institute for Interdisciplinary Science, Okayama University, Kita-ku, Okayama 700-8530, Japan
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27
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Kosumi D, Horibe T, Sugisaki M, Cogdell RJ, Hashimoto H. Photoprotection Mechanism of Light-Harvesting Antenna Complex from Purple Bacteria. J Phys Chem B 2016; 120:951-6. [PMID: 26800035 DOI: 10.1021/acs.jpcb.6b00121] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Photosynthetic light-harvesting apparatus efficiently capture sunlight and transfer the energy to reaction centers, while they safely dissipate excess energy to surrounding environments for a protection of their organisms. In this study, we performed pump-probe spectroscopic measurements with a temporal window ranging from femtosecond to submillisecond on the purple bacterial antenna complex LH2 from Rhodobacter sphaeroides 2.4.1 to clarify its photoprotection functions. The observed excited state dynamics in the time range from subnanosecond to microsecond exhibits that the triplet-triplet excitation energy transfer from bacteriochlorophyll a to carotenoid takes place with a time constant of 16.7 ns. Furthermore, ultrafast spectroscopic data suggests that a molecular assembly of bacteriochlorophyll a in LH2 efficiently suppresses a generation of triple bacteriochlorophyll a.
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Affiliation(s)
- Daisuke Kosumi
- Institute of Pulsed Power Science, Kumamoto University , 2-39-1 Kurokami, Chuo-ku Kumamoto, 860-8555 Japan.,Department of Physics, Graduate School of Science and Technology, Kumamoto University , Chuo-ku Kumamoto, 860-8555 Japan
| | - Tomoko Horibe
- Department of Applied Chemistry for Environment, Faculty of Science and Technology, Kwansei Gakuin University , 2-1, Gakuen, Sanda, Hyogo 669-1337 Japan
| | - Mitsuru Sugisaki
- Department of Physics, Graduate School of Science, Osaka City University , 3-3-138 Sugimoto, Sumiyoshi-ku Osaka 558-8585, Japan
| | - Richard J Cogdell
- Glasgow Biomedical Research Centre, University of Glasgow, 126 University Place , Glasgow, G12 8QQ, Scotland, U.K
| | - Hideki Hashimoto
- Department of Applied Chemistry for Environment, Faculty of Science and Technology, Kwansei Gakuin University , 2-1, Gakuen, Sanda, Hyogo 669-1337 Japan
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28
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Tubasum S, Torbjörnsson M, Yadav D, Camacho R, Söderlind G, Scheblykin IG, Pullerits T. Protein Configuration Landscape Fluctuations Revealed by Exciton Transition Polarizations in Single Light Harvesting Complexes. J Phys Chem B 2016; 120:724-32. [PMID: 26741912 DOI: 10.1021/acs.jpcb.5b12466] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
Protein is a flexible material with broad distribution of conformations forming an energy landscape of quasi-stationary states. Disentangling the system dynamics along this landscape is the key for understanding the functioning of the protein. Here we studied a photosynthetic antenna pigment-protein complex LH2 with single molecule two-dimensional polarization imaging. Modeling based on the Redfield relaxation theory well describes the observed polarization properties of LH2 fluorescence and fluorescence excitation, strongly suggesting that at 77 K the conformational subspace of the LH2 is limited to about three configurations with relatively frequent switching among each other. At room temperature the next level of fluctuations determines the conformational dynamics. The results support the multitier model of the energy landscape of proteins and demonstrate the potential of the method for the studies of structural dynamics in proteins.
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Affiliation(s)
- Sumera Tubasum
- Division of Chemical Physics, Department of Chemistry, Lund University , Box 124, 22100 Lund, Sweden.,Division of Numerical Analysis, Centre for Mathematical Sciences, Lund University , Box 124, 22100 Lund, Sweden
| | - Magne Torbjörnsson
- Division of Chemical Physics, Department of Chemistry, Lund University , Box 124, 22100 Lund, Sweden.,Division of Numerical Analysis, Centre for Mathematical Sciences, Lund University , Box 124, 22100 Lund, Sweden
| | - Dheerendra Yadav
- Division of Chemical Physics, Department of Chemistry, Lund University , Box 124, 22100 Lund, Sweden.,Division of Numerical Analysis, Centre for Mathematical Sciences, Lund University , Box 124, 22100 Lund, Sweden
| | - Rafael Camacho
- Division of Chemical Physics, Department of Chemistry, Lund University , Box 124, 22100 Lund, Sweden.,Division of Numerical Analysis, Centre for Mathematical Sciences, Lund University , Box 124, 22100 Lund, Sweden
| | - Gustaf Söderlind
- Division of Chemical Physics, Department of Chemistry, Lund University , Box 124, 22100 Lund, Sweden.,Division of Numerical Analysis, Centre for Mathematical Sciences, Lund University , Box 124, 22100 Lund, Sweden
| | - Ivan G Scheblykin
- Division of Chemical Physics, Department of Chemistry, Lund University , Box 124, 22100 Lund, Sweden.,Division of Numerical Analysis, Centre for Mathematical Sciences, Lund University , Box 124, 22100 Lund, Sweden
| | - Tõnu Pullerits
- Division of Chemical Physics, Department of Chemistry, Lund University , Box 124, 22100 Lund, Sweden.,Division of Numerical Analysis, Centre for Mathematical Sciences, Lund University , Box 124, 22100 Lund, Sweden
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29
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Schörner M, Beyer SR, Southall J, Cogdell RJ, Köhler J. Conformational Memory of a Protein Revealed by Single-Molecule Spectroscopy. J Phys Chem B 2015; 119:13964-70. [PMID: 26420643 DOI: 10.1021/acs.jpcb.5b07494] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Proteins are supramolecular machines that carry out a wide range of different functions, many of which require flexibility. Up until now spontaneous conformational fluctuations of proteins have always been assumed to reflect a stochastic random process. However, if changing between different conformational states was random, then it would be difficult to understand how conformational control of protein function could have evolved. Here we demonstrate that a single protein can show conformational memory. This is exactly the process that can facilitate the evolution of control of switching between two conformational states that can then be used to regulate protein function.
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Affiliation(s)
- Mario Schörner
- Experimental Physics IV and Bayreuth Institute for Macromolecular Research (BIMF), University of Bayreuth , 95447 Bayreuth, Germany
| | - Sebastian Reinhardt Beyer
- Experimental Physics IV and Bayreuth Institute for Macromolecular Research (BIMF), University of Bayreuth , 95447 Bayreuth, Germany
| | - June Southall
- Institute of Molecular, Cell & Systems Biology, College of Medical Veterinary and Life Sciences, University of Glasgow , Glasgow G12 8QQ, United Kingdom
| | - Richard J Cogdell
- Institute of Molecular, Cell & Systems Biology, College of Medical Veterinary and Life Sciences, University of Glasgow , Glasgow G12 8QQ, United Kingdom
| | - Jürgen Köhler
- Experimental Physics IV and Bayreuth Institute for Macromolecular Research (BIMF), University of Bayreuth , 95447 Bayreuth, Germany
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30
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Schörner M, Beyer SR, Southall J, Cogdell RJ, Köhler J. Multi-Level, Multi Time-Scale Fluorescence Intermittency of Photosynthetic LH2 Complexes: A Precursor of Non-Photochemical Quenching? J Phys Chem B 2015; 119:13958-63. [PMID: 26419118 DOI: 10.1021/acs.jpcb.5b06979] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The light harvesting complex LH2 is a chromoprotein that is an ideal system for studying protein dynamics via the spectral fluctuations of the emission of its intrinsic chromophores. We have immobilized these complexes in a polymer film and studied the fluctuations of the fluorescence intensity from individual complexes over 9 orders of magnitude in time. Combining time-tagged detection of single photons with a change-point analysis has allowed the unambigeous identification of the various intensity levels due to the huge statistical basis of the data set. We propose that the observed intensity level fluctuations reflect conformational changes of the protein backbone that might be a precursor of the mechanism from which nonphotochemical quenching of higher plants has evolved.
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Affiliation(s)
- Mario Schörner
- Experimental Physics IV and Bayreuth Institute for Macromolecular Research (BIMF), University of Bayreuth , 95447 Bayreuth, Germany
| | - Sebastian Reinhardt Beyer
- Experimental Physics IV and Bayreuth Institute for Macromolecular Research (BIMF), University of Bayreuth , 95447 Bayreuth, Germany
| | - June Southall
- Institute of Molecular, Cell & Systems Biology, College of Medical Veterinary and Life Sciences, University of Glasgow , Glasgow G12 8QQ, United Kingdom
| | - Richard J Cogdell
- Institute of Molecular, Cell & Systems Biology, College of Medical Veterinary and Life Sciences, University of Glasgow , Glasgow G12 8QQ, United Kingdom
| | - Jürgen Köhler
- Experimental Physics IV and Bayreuth Institute for Macromolecular Research (BIMF), University of Bayreuth , 95447 Bayreuth, Germany
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31
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Son M, Fimmel B, Dehm V, Würthner F, Kim D. Folding-Induced Modulation of Excited-State Dynamics in an Oligophenylene-Ethynylene-Tethered Spiral Perylene Bisimide Aggregate. Chemphyschem 2015; 16:1757-67. [DOI: 10.1002/cphc.201500156] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2015] [Indexed: 11/11/2022]
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32
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Beyer SR, Müller L, Southall J, Cogdell RJ, Ullmann GM, Köhler J. The open, the closed, and the empty: time-resolved fluorescence spectroscopy and computational analysis of RC-LH1 complexes from Rhodopseudomonas palustris. J Phys Chem B 2015; 119:1362-73. [PMID: 25526393 DOI: 10.1021/jp510822k] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
We studied the time-resolved fluorescence of isolated RC-LH1 complexes from Rhodopseudomonas palustris as a function of the photon fluence and the repetition rate of the excitation laser. Both parameters were varied systematically over 3 orders of magnitude. On the basis of a microstate description we developed a quantitative model for RC-LH1 and obtained very good agreement between experiments and elaborate simulations based on a global master equation approach. The model allows us to predict the relative population of RC-LH1 complexes with the special pair in the neutral state or in the oxidized state P(+) and those complexes that lack a reaction center.
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Affiliation(s)
- Sebastian R Beyer
- Experimental Physics IV and Bayreuther Institut für Makromolekülforschung (BIMF), University of Bayreuth , 95440 Bayreuth, Germany
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33
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Yong CK, Parkinson P, Kondratuk DV, Chen WH, Stannard A, Summerfield A, Sprafke JK, O'Sullivan MC, Beton PH, Anderson HL, Herz LM. Ultrafast delocalization of excitation in synthetic light-harvesting nanorings. Chem Sci 2015; 6:181-189. [PMID: 28553466 PMCID: PMC5424671 DOI: 10.1039/c4sc02424a] [Citation(s) in RCA: 91] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2014] [Accepted: 09/16/2014] [Indexed: 11/21/2022] Open
Abstract
Rings of chlorophyll molecules harvest sunlight remarkably efficiently during photosynthesis in purple bacteria. The key to their efficiency lies in their highly delocalized excited states that allow for ultrafast energy migration. Here we show that a family of synthetic nanorings mimic the ultrafast energy transfer and delocalization observed in nature. π-Conjugated nanorings with diameters of up to 10 nm, consisting of up to 24 porphyrin units, are found to exhibit excitation delocalization within the first 200 fs of light absorption. Transitions from the first singlet excited state of the circular nanorings are dipole-forbidden as a result of symmetry constraints, but these selection rules can be lifted through static and dynamic distortions of the rings. The increase in the radiative emission rate in the larger nanorings correlates with an increase in static disorder expected from Monte Carlo simulations. For highly symmetric rings, the radiative rate is found to increase with increasing temperature. Although this type of thermally activated superradiance has been theoretically predicted in circular chromophore arrays, it has not previously been observed in any natural or synthetic systems. As expected, the activation energy for emission increases when a nanoring is fixed in a circular conformation by coordination to a radial template. These nanorings offer extended chromophores with high excitation delocalization that is remarkably stable against thermally induced disorder. Such findings open new opportunities for exploring coherence effects in nanometer molecular rings and for implementing these biomimetic light-harvesters in man-made devices.
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Affiliation(s)
- Chaw-Keong Yong
- University of Oxford , Department of Physics , Clarendon Laboratory , Parks Road , Oxford , OX1 3PU , UK .
| | - Patrick Parkinson
- University of Oxford , Department of Physics , Clarendon Laboratory , Parks Road , Oxford , OX1 3PU , UK .
| | - Dmitry V Kondratuk
- University of Oxford , Department of Chemistry , Chemistry Research Laboratory , Oxford , OX1 3TA , UK .
| | - Wei-Hsin Chen
- University of Oxford , Department of Physics , Clarendon Laboratory , Parks Road , Oxford , OX1 3PU , UK .
| | - Andrew Stannard
- School of Physics & Astronomy , University of Nottingham , Nottingham , NG7 2RD , UK
| | - Alex Summerfield
- School of Physics & Astronomy , University of Nottingham , Nottingham , NG7 2RD , UK
| | - Johannes K Sprafke
- University of Oxford , Department of Chemistry , Chemistry Research Laboratory , Oxford , OX1 3TA , UK .
| | - Melanie C O'Sullivan
- University of Oxford , Department of Chemistry , Chemistry Research Laboratory , Oxford , OX1 3TA , UK .
| | - Peter H Beton
- School of Physics & Astronomy , University of Nottingham , Nottingham , NG7 2RD , UK
| | - Harry L Anderson
- University of Oxford , Department of Chemistry , Chemistry Research Laboratory , Oxford , OX1 3TA , UK .
| | - Laura M Herz
- University of Oxford , Department of Physics , Clarendon Laboratory , Parks Road , Oxford , OX1 3PU , UK .
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34
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Wientjes E, Renger J, Curto AG, Cogdell R, van Hulst NF. Strong antenna-enhanced fluorescence of a single light-harvesting complex shows photon antibunching. Nat Commun 2014; 5:4236. [PMID: 24953833 PMCID: PMC4083440 DOI: 10.1038/ncomms5236] [Citation(s) in RCA: 70] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2014] [Accepted: 05/27/2014] [Indexed: 01/29/2023] Open
Abstract
The nature of the highly efficient energy transfer in photosynthetic light-harvesting complexes is a subject of intense research. Unfortunately, the low fluorescence efficiency and limited photostability hampers the study of individual light-harvesting complexes at ambient conditions. Here we demonstrate an over 500-fold fluorescence enhancement of light-harvesting complex 2 (LH2) at the single-molecule level by coupling to a gold nanoantenna. The resonant antenna produces an excitation enhancement of circa 100 times and a fluorescence lifetime shortening to ~\n20 ps. The radiative rate enhancement results in a 5.5-fold-improved fluorescence quantum efficiency. Exploiting the unique brightness, we have recorded the first photon antibunching of a single light-harvesting complex under ambient conditions, showing that the 27 bacteriochlorophylls coordinated by LH2 act as a non-classical single-photon emitter. The presented bright antenna-enhanced LH2 emission is a highly promising system to study energy transfer and the role of quantum coherence at the level of single complexes. Quantum processes may have an important role in photosynthetic light-harvesting complexes, but their low fluorescence efficiency impedes studies. By coupling them to gold nanoantennas, Wientjes et al. show over 500 times enhancement of fluorescence from single molecules of light-harvesting complex 2.
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Affiliation(s)
- Emilie Wientjes
- ICFO-Institut de Ciencies Fotoniques, Mediterranean Technology Park, 08860 Castelldefels (Barcelona), Spain
| | - Jan Renger
- ICFO-Institut de Ciencies Fotoniques, Mediterranean Technology Park, 08860 Castelldefels (Barcelona), Spain
| | - Alberto G Curto
- 1] ICFO-Institut de Ciencies Fotoniques, Mediterranean Technology Park, 08860 Castelldefels (Barcelona), Spain [2] Geballe Laboratory for Advanced Materials, Stanford University, Stanford, California 94305, USA
| | - Richard Cogdell
- Institute of Biomedical and Life Sciences, University of Glasgow, Biomedical Research Building, Glasgow G12 8QQ, UK
| | - Niek F van Hulst
- 1] ICFO-Institut de Ciencies Fotoniques, Mediterranean Technology Park, 08860 Castelldefels (Barcelona), Spain [2] ICREA-Institució Catalana de Recerca i Estudis Avançats, 08010 Barcelona, Spain
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35
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Fidler AF, Singh VP, Long PD, Dahlberg PD, Engel GS. Dynamic localization of electronic excitation in photosynthetic complexes revealed with chiral two-dimensional spectroscopy. Nat Commun 2014; 5:3286. [PMID: 24504144 PMCID: PMC3976994 DOI: 10.1038/ncomms4286] [Citation(s) in RCA: 57] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2013] [Accepted: 01/21/2014] [Indexed: 01/18/2023] Open
Abstract
Time-resolved ultrafast optical probes of chiral dynamics provide a new window allowing us to explore how interactions with such structured environments drive electronic dynamics. Incorporating optical activity into time-resolved spectroscopies has proven challenging because of the small signal and large achiral background. Here we demonstrate that two-dimensional electronic spectroscopy can be adapted to detect chiral signals and that these signals reveal how excitations delocalize and contract following excitation. We dynamically probe the evolution of chiral electronic structure in the light-harvesting complex 2 of purple bacteria following photoexcitation by creating a chiral two-dimensional mapping. The dynamics of the chiral two-dimensional signal directly reports on changes in the degree of delocalization of the excitonic states following photoexcitation. The mechanism of energy transfer in this system may enhance transfer probability because of the coherent coupling among chromophores while suppressing fluorescence that arises from populating delocalized states. This generally applicable spectroscopy will provide an incisive tool to probe ultrafast transient molecular fluctuations that are obscured in non-chiral experiments.
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Affiliation(s)
- Andrew F. Fidler
- Department of Chemistry, Institute for Biophysical Dynamics, and The James Franck Institute, 929 East 57 Street, The University of Chicago, Chicago, Illinois 60637, USA
| | - Ved P. Singh
- Department of Chemistry, Institute for Biophysical Dynamics, and The James Franck Institute, 929 East 57 Street, The University of Chicago, Chicago, Illinois 60637, USA
| | - Phillip D. Long
- Program in the Biophysical Sciences, 929 East 57 Street, Institute for Biophysical Dynamics, The University of Chicago, Chicago, IL 60637
| | - Peter D. Dahlberg
- Program in the Biophysical Sciences, 929 East 57 Street, Institute for Biophysical Dynamics, The University of Chicago, Chicago, IL 60637
| | - Gregory S. Engel
- Department of Chemistry, Institute for Biophysical Dynamics, and The James Franck Institute, 929 East 57 Street, The University of Chicago, Chicago, Illinois 60637, USA
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36
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Jiang HW, Ham S, Aratani N, Kim D, Osuka A. A 1,3-Phenylene-Bridged Hexameric Porphyrin Wheel and Efficient Excitation Energy Transfer along the Wheel. Chemistry 2013; 19:13328-36. [DOI: 10.1002/chem.201302361] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2013] [Indexed: 11/10/2022]
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37
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Xue L, Shi Y, Zhang L, Li X. Difference in the Photophysical Properties of a Perylenetetracarboxylic Diimide Dimer and a Hexamer Linked by the Same Hexaphenylbenzene Group. Chemphyschem 2013; 14:3319-26. [DOI: 10.1002/cphc.201300602] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2013] [Indexed: 11/10/2022]
Affiliation(s)
- Lin Xue
- Key Laboratory of Colloid and Interface Chemistry, Ministry of Education of China, Department of Chemistry, Shandong University, Shanda nan lu, #27, Jinan, Shandong, 250100 (China), Fax: (+86) 531‐88564464
| | - Yan Shi
- Key Laboratory of Colloid and Interface Chemistry, Ministry of Education of China, Department of Chemistry, Shandong University, Shanda nan lu, #27, Jinan, Shandong, 250100 (China), Fax: (+86) 531‐88564464
| | - Liangliang Zhang
- Key Laboratory of Colloid and Interface Chemistry, Ministry of Education of China, Department of Chemistry, Shandong University, Shanda nan lu, #27, Jinan, Shandong, 250100 (China), Fax: (+86) 531‐88564464
| | - Xiyou Li
- Key Laboratory of Colloid and Interface Chemistry, Ministry of Education of China, Department of Chemistry, Shandong University, Shanda nan lu, #27, Jinan, Shandong, 250100 (China), Fax: (+86) 531‐88564464
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38
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Lee JE, Stepanenko V, Yang J, Yoo H, Schlosser F, Bellinger D, Engels B, Scheblykin IG, Würthner F, Kim D. Structure-property relationship of perylene bisimide macrocycles probed by atomic force microscopy and single-molecule fluorescence spectroscopy. ACS NANO 2013; 7:5064-5076. [PMID: 23656366 DOI: 10.1021/nn400616u] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Properties of a series of acetylene-linked perylene bisimide (PBI) macrocycles with different ring size composed of three to six PBI dyes were investigated by atomic force microscopy (AFM) and single-molecule fluorescence spectroscopy in a condensed phase. It was demonstrated that the structures of PBI cyclic arrays (CNs, N = 3, 4, 5, and 6) become distorted with increasing the ring size through molecular dynamics (MD) simulations (PM6-DH2 method) and AFM height images of CNs on highly ordered pyrolytic graphite (HOPG) surface. The MD simulations showed that only C5 and C6 rings are highly flexible molecules whose planarization goes along with a significant energetic penalty. Accordingly, both molecules did not show ordered adlayers on a HOPG surface. In contrast, C3 and C4 are far more rigid molecules leading to well-ordered hexagonal (C3) and rectangular (C4) 2D lattices. At the single-molecule level, we showed that the fluorescence properties of single CNs are affected by the structural changes. The fluorescence lifetimes of CNs became shorter and their distributions became broader due to the structural distortions with increasing the ring size. Furthermore, the CNs of smaller ring size exhibit a higher photostability and an efficient excitation energy transfer (EET) due to the more well-defined and planar structures compared to the larger CNs. Consequently, these observations provide evidence that not only PBI macrocycles are promising candidates for artificial light-harvesting systems, but also the photophysical properties of CNs are strongly related to the structural rigidity of CNs.
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Affiliation(s)
- Ji-Eun Lee
- Spectroscopy Laboratory for Functional π-Electronic Systems and Department of Chemistry, Yonsei University, Seoul, 120-749, Korea
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39
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Vengris M, Larsen DS, Valkunas L, Kodis G, Herrero C, Gust D, Moore T, Moore A, van Grondelle R. Separating annihilation and excitation energy transfer dynamics in light harvesting systems. J Phys Chem B 2013; 117:11372-82. [PMID: 23662680 DOI: 10.1021/jp403301c] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
The dependence of excitation energy transfer kinetics on the electronic state of the acceptor (ground vs excited) has been resolved with a novel multipulse prePump-Pump-Probe spectroscopy. The primary energy transfer and annihilation dynamics in two model light-harvesting systems were explored: an artificially synthesized carotenoid-zinc-phthalocyanine dyad and a naturally occurring light-harvesting peridinin-chlorophyll protein complex from Amphidinium carterae. Both systems use carotenoid as the primary excitation energy donor with porphyrin chromophores as the acceptor molecules. The prePump-Pump-Probe transient signals were analyzed with Monte Carlo modeling to explicitly address the underlying step-by-step kinetics involved in both excitation migration and annihilation processes. Both energy transfer and annihilation dynamics were demonstrated to occur with approximately the same rate in both systems, regardless of the excitation status of the acceptor pigments. The possible reasons for these observations are discussed in the framework of the Förster energy transfer model.
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Affiliation(s)
- Mikas Vengris
- Quantum Electronics Department, Faculty of Physics, Vilnius University , Saulėtekio 9-III, 10222 Vilnius, Lithuania
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40
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Chen M, Scheer H. Extending the limits of natural photosynthesis and implications for technical light harvesting. J PORPHYR PHTHALOCYA 2013. [DOI: 10.1142/s1088424612300108] [Citation(s) in RCA: 61] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
Photosynthetic organisms provide, directly or indirectly, the energy that sustains life on earth by harvesting light from the sun. The amount of light impinging on the surface of the earth vastly surpasses the energy needs of life including man. Harvesting the sun is, therefore, an option for a sustainable energy source: directly by improving biomass production, indirectly by coupling it to the production of hydrogen for fuel or, conceptually, by using photosynthetic strategies for technological solutions based on non-biological or hybrid materials. In this review, we summarize the various light climates on earth, the primary reactions responsible for light harvesting and transduction to chemical energy in photosynthesis, and the mechanisms of competitively adapting the photosynthetic apparatus to the ever-changing light conditions. The focus is on oxygenic photosynthesis, its adaptation to the various light-climates by specialized pigments and on the extension of its limits by the evolution of red-shifted chlorophylls. The implications for potential technical solutions are briefly discussed.
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Affiliation(s)
- Min Chen
- School of Biological Sciences, University of Sydney, Sydney NSW 2006, Australia
| | - Hugo Scheer
- Dept-Biologie 1, Botanik, Universität München, 80638 München, Germany
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41
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Yang J, Kim D. Excitation energy migration processes in various multi-porphyrin assemblies. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2012; 370:3802-18. [PMID: 22753827 DOI: 10.1098/rsta.2011.0206] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
The electronic interactions and excitation energy transfer (EET) processes of a variety of multi-porphyrin arrays with linear, cyclic and box architectures have been explored. Directly meso-meso linked linear arrays (Z(N)) exhibit strong excitonic coupling with an exciton coherence length of approximately 6 porphyrin units, while fused linear arrays (T(N)) exhibit extensive π-conjugation over the whole array. The excitonic coherence length in directly linked cyclic porphyrin rings (CZ(N)) was determined to be approximately 2.7 porphyrin units by simultaneous analysis of fluorescence intensities and lifetimes at the single-molecule level. By performing transient absorption (TA) and TA anisotropy decay measurements, the EET rates in m-phenylene linked cyclic porphyrin wheels C12ZA and C24ZB were determined to be 4 and 36 ps(-1), respectively. With increasing the size of C(N)ZA, the EET efficiencies decrease owing to the structural distortions that produce considerable non-radiative decay pathways. Finally, the EET rates of self-assembled porphyrin boxes consisting of directly linked diporphyrins, B1A, B2A and B3A, are 48, 98 and 361 ps(-1), respectively. The EET rates of porphyrin boxes consisting of alkynylene-bridged diporphyrins, B2B and B4B, depend on the conformation of building blocks (planar or orthogonal) rather than the length of alkynylene linkers.
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Affiliation(s)
- Jaesung Yang
- Department of Chemistry and Spectroscopy Laboratory for Functional π-Electronic Systems, Yonsei University, Seoul 120-749, Korea
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42
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Niedzwiedzki DM, Bina D, Picken N, Honkanen S, Blankenship RE, Holten D, Cogdell RJ. Spectroscopic studies of two spectral variants of light-harvesting complex 2 (LH2) from the photosynthetic purple sulfur bacterium Allochromatium vinosum. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2012; 1817:1576-87. [PMID: 22659401 DOI: 10.1016/j.bbabio.2012.05.009] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2012] [Revised: 05/08/2012] [Accepted: 05/22/2012] [Indexed: 11/17/2022]
Abstract
Two spectral forms of the peripheral light-harvesting complex (LH2) from the purple sulfur photosynthetic bacterium Allochromatium vinosum were purified and their photophysical properties characterized. The complexes contain bacteriochlorophyll a (BChl a) and multiple species of carotenoids. The composition of carotenoids depends on the light conditions applied during growth of the cultures. In addition, LH2 grown under high light has a noticeable split of the B800 absorption band. The influence of the change of carotenoid distribution as well as the spectral change of the excitonic absorption of the bacteriochlorophylls on the light-harvesting ability was studied using steady-state absorption, fluorescence and femtosecond time-resolved absorption at 77K. The results demonstrate that the change of the distribution of the carotenoids when cells were grown at low light adapts the absorptive properties of the complex to the light conditions and maintains maximum photon-capture performance. In addition, an explanation for the origin of the enigmatic split of the B800 absorption band is provided. This spectral splitting is also observed in LH2 complexes from other photosynthetic sulfur purple bacterial species. According to results obtained from transient absorption spectroscopy, the B800 band split originates from two spectral forms of the associated BChl a monomeric molecules bound within the same complex.
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43
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Conductivity by Electron Pairs. Chem Phys 2012. [DOI: 10.1201/b11524-20] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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44
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Abramavicius D, Nemeth A, Milota F, Sperling J, Mukamel S, Kauffmann HF. Weak exciton scattering in molecular nanotubes revealed by double-quantum two-dimensional electronic spectroscopy. PHYSICAL REVIEW LETTERS 2012; 108:067401. [PMID: 22401120 PMCID: PMC3721760 DOI: 10.1103/physrevlett.108.067401] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2011] [Indexed: 05/03/2023]
Abstract
The two-exciton manifold of a double-wall cylindrical molecular aggregate is studied using a coherent third order optical technique. Experiments reveal the anharmonic character of the exciton bands. Atomistic simulations of the exciton-exciton scattering show that the excitons can be treated as weakly coupled hard-core bosons. The weak coupling stems from the extended exciton delocalization made possible by the nanotube geometry.
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Affiliation(s)
- Darius Abramavicius
- State Key Laboratory of Supramolecular Structure and Materials, Jilin University, Changchun 130012, China
- Department of Theoretical Physics, Vilnius University, Saulėtekio al. 9-III, LT-10222 Vilnius, Lithuania
| | | | - Franz Milota
- Faculty of Physics, University of Vienna, 1090 Vienna, Austria
| | | | - Shaul Mukamel
- Department of Chemistry, University of California, Irvine, California 92697-2025, USA
| | - Harald F. Kauffmann
- Faculty of Physics, University of Vienna, 1090 Vienna, Austria
- Faculty of Physics, Vienna University of Technology, 1040 Vienna, Austria
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45
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Bahng HW, Yoon MC, Lee JE, Murase Y, Yoneda T, Shinokubo H, Osuka A, Kim D. Ensemble and Single-Molecule Spectroscopic Study on Excitation Energy Transfer Processes in 1,3-Phenylene-Linked Perylenebisimide Oligomers. J Phys Chem B 2012; 116:1244-55. [DOI: 10.1021/jp208855u] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Affiliation(s)
- Hee Won Bahng
- Spectroscopy Laboratory for Functional π-Electronic Systems and Department of Chemistry, Yonsei University, Seoul 120-749, Korea
| | - Min-Chul Yoon
- Spectroscopy Laboratory for Functional π-Electronic Systems and Department of Chemistry, Yonsei University, Seoul 120-749, Korea
| | - Ji-Eun Lee
- Spectroscopy Laboratory for Functional π-Electronic Systems and Department of Chemistry, Yonsei University, Seoul 120-749, Korea
| | - Yuichi Murase
- Department of Chemistry and Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan
| | - Tomoki Yoneda
- Department of Chemistry and Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan
| | - Hiroshi Shinokubo
- Department of Applied Chemistry, Graduate School of Engineering, Nagoya University, Chikusa-ku, Nagoya 464-8603, Japan
| | - Atsuhiro Osuka
- Department of Chemistry and Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan
| | - Dongho Kim
- Spectroscopy Laboratory for Functional π-Electronic Systems and Department of Chemistry, Yonsei University, Seoul 120-749, Korea
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46
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Schlosser F, Sung J, Kim P, Kim D, Würthner F. Excitation energy migration in covalently linked perylene bisimide macrocycles. Chem Sci 2012. [DOI: 10.1039/c2sc20589k] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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47
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Bahng HW, Kim P, Sung YM, Maeda C, Osuka A, Kim D. Molecular engineering and solvent dependence of excitation energy hopping in self-assembled porphyrin boxes. Chem Commun (Camb) 2012; 48:4181-3. [DOI: 10.1039/c2cc30834g] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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48
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Pflock TJ, Oellerich S, Southall J, Cogdell RJ, Ullmann GM, Köhler J. The Electronically Excited States of LH2 Complexes from Rhodopseudomonas acidophila Strain 10050 Studied by Time-Resolved Spectroscopy and Dynamic Monte Carlo Simulations. I. Isolated, Non-Interacting LH2 Complexes. J Phys Chem B 2011; 115:8813-20. [DOI: 10.1021/jp202353c] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Tobias J. Pflock
- Experimental Physics IV and BIMF, University of Bayreuth, D-95440 Bayreuth, Germany
| | - Silke Oellerich
- Experimental Physics IV and BIMF, University of Bayreuth, D-95440 Bayreuth, Germany
| | - June Southall
- Institute of Molecular, Cell and Systems Biology, College of Medical Veterinary and Life Sciences, Biomedical Research Building, University of Glasgow, Glasgow G12 8QQ, Scotland, U.K
| | - Richard J. Cogdell
- Institute of Molecular, Cell and Systems Biology, College of Medical Veterinary and Life Sciences, Biomedical Research Building, University of Glasgow, Glasgow G12 8QQ, Scotland, U.K
| | - G. Matthias Ullmann
- Computational Biochemistry/Bioinformatics, University of Bayreuth, D-95440 Bayreuth
| | - Jürgen Köhler
- Experimental Physics IV and BIMF, University of Bayreuth, D-95440 Bayreuth, Germany
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49
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Pflock TJ, Oellerich S, Krapf L, Southall J, Cogdell RJ, Ullmann GM, Köhler J. The Electronically Excited States of LH2 Complexes from Rhodopseudomonas acidophila Strain 10050 Studied by Time-Resolved Spectroscopy and Dynamic Monte Carlo Simulations. II. Homo-Arrays Of LH2 Complexes Reconstituted Into Phospholipid Model Membranes. J Phys Chem B 2011; 115:8821-31. [DOI: 10.1021/jp2023583] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Tobias J. Pflock
- Experimental Physics IV and BIMF, University of Bayreuth, D-95440 Bayreuth, Germany
| | - Silke Oellerich
- Experimental Physics IV and BIMF, University of Bayreuth, D-95440 Bayreuth, Germany
| | - Lisa Krapf
- Experimental Physics IV and BIMF, University of Bayreuth, D-95440 Bayreuth, Germany
| | - June Southall
- Institute of Molecular, Cell and Systems Biology, College of Medical Veterinary and Life Sciences, Biomedical Research Building, University of Glasgow, Glasgow G12 8QQ, Scotland, U.K
| | - Richard J. Cogdell
- Institute of Molecular, Cell and Systems Biology, College of Medical Veterinary and Life Sciences, Biomedical Research Building, University of Glasgow, Glasgow G12 8QQ, Scotland, U.K
| | - G. Matthias Ullmann
- Computational Biochemistry/Bioinformatics, University of Bayreuth, D-95440 Bayreuth, Germany
| | - Jürgen Köhler
- Experimental Physics IV and BIMF, University of Bayreuth, D-95440 Bayreuth, Germany
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50
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Tubasum S, Cogdell RJ, Scheblykin IG, Pullerits T. Excitation−Emission Polarization Spectroscopy of Single Light Harvesting Complexes. J Phys Chem B 2011; 115:4963-70. [DOI: 10.1021/jp107480x] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Sumera Tubasum
- Department of Chemical Physics, Lund University, P.O. Box 124, SE-22 100, Lund, Sweden
| | - Richard J. Cogdell
- Glasgow Biomedical Research Centre, University of Glasgow, G12 8QQ, United Kingdom
| | - Ivan G. Scheblykin
- Department of Chemical Physics, Lund University, P.O. Box 124, SE-22 100, Lund, Sweden
| | - Tõnu Pullerits
- Department of Chemical Physics, Lund University, P.O. Box 124, SE-22 100, Lund, Sweden
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