1
|
Wang Z, Ye X, Huang L, Yuan Y. Modulation of morphogenesis and metabolism by plant cell biomechanics: from model plants to traditional herbs. HORTICULTURE RESEARCH 2025; 12:uhaf011. [PMID: 40093376 PMCID: PMC11908831 DOI: 10.1093/hr/uhaf011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/18/2024] [Accepted: 01/05/2025] [Indexed: 03/19/2025]
Abstract
The quality of traditional herbs depends on organ morphogenesis and the accumulation of active pharmaceutical ingredients. While recent research highlights the significance of cell mechanobiology in model plant morphogenesis, our understanding of mechanical signal initiation and transduction in traditional herbs remains incomplete. Recent studies reveal a close correlation between cell wall (CW) biosynthesis and active ingredient production, yet the role of cell mechanics in balancing morphogenesis and secondary metabolism is often overlooked. This review explores how the cell wall, plasma membrane, cytoskeleton, and vacuole collaborate to regulate cell mechanics and respond to mechanical changes. We propose CW biosynthesis as a hub in connecting cell mechanics with secondary metabolism and emphasize that understanding the relationship between mechanical remodeling and secondary metabolism could provide new insights into plant cell mechanobiology and the breeding of high-quality herbs.
Collapse
Affiliation(s)
- Zhengpeng Wang
- Experimental Research Center, China Academy of Chinese Medical Science, Beijing 100700, China
- State Key Laboratory for Quality Ensurance and Sustainable Use of Dao-di Herbs, China Academy of Chinese Medical Sciences (CACMS), Beijing 100700, China
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang, Jiangsu 212013, China
| | - Xiaoming Ye
- Peking University Health Science Center, Peking University, Beijing 100700, China
| | - Luqi Huang
- State Key Laboratory for Quality Ensurance and Sustainable Use of Dao-di Herbs, China Academy of Chinese Medical Sciences (CACMS), Beijing 100700, China
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang, Jiangsu 212013, China
| | - Yuan Yuan
- Experimental Research Center, China Academy of Chinese Medical Science, Beijing 100700, China
- State Key Laboratory for Quality Ensurance and Sustainable Use of Dao-di Herbs, China Academy of Chinese Medical Sciences (CACMS), Beijing 100700, China
| |
Collapse
|
2
|
Wang C, He W, Li K, Yu Y, Zhang X, Yang S, Wang Y, Yu L, Huang W, Yu H, Chen L, Cheng X. Genetic Diversity Analysis and GWAS of Plant Height and Ear Height in Maize Inbred Lines from South-East China. PLANTS (BASEL, SWITZERLAND) 2025; 14:481. [PMID: 39943042 PMCID: PMC11820090 DOI: 10.3390/plants14030481] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/11/2024] [Revised: 02/02/2025] [Accepted: 02/04/2025] [Indexed: 02/16/2025]
Abstract
Maize is a critical crop for food, feed, and bioenergy worldwide. This study characterized the genetic diversity and population structure of 212 important inbred lines collected from the Southeast China breeding program using the Maize6H-60K single nucleotide polymorphism (SNP) array. To investigate the genetic architecture of plant height (PH) and ear height (EH), genome-wide association analysis (GWAS) was performed on this population in 2021 and 2022. Cluster analysis and population genetic structure analysis grouped the 212 maize inbred lines into 10 distinct categories. GWAS identified significant associations for PH, EH, and the EH/PH ratio. A total of 40 significant SNP (p < 8.55359 × 10-7) were detected, including nine associated with PH, with phenotypic variation explained (PVE) ranging from 3.42% to 25.92%. Additionally, 16 SNP were linked to EH, with PVE ranging from 2.49% to 38.49%, and 15 SNP were associated with the EH/PH ratio, showing PVE between 3.43% and 16.83%. Five stable SNP, identified across two or more environments, were further analyzed. Three of these SNP loci are reported for the first time in this study: two loci associated with the PH, AX-108020973, and AX-108022922, as well as one new locus, AX-108096437, which was significantly associated with the EH/PH ratio. Additionally, two other significant SNP (AX-247241325 and AX-108097244) were located within a 2 Mb range of previously identified QTL and/or related SNP. Within the 200 kb confidence intervals of these five stable SNP loci, 76 functionally annotated genes were identified. Further functional analysis indicated that 14 of these genes may play a role in regulating plant morphology, which is primarily involved in hormone synthesis, microtubule development, root growth, and cell division regulation. For instance, the homologous genes GRMZM2G375249 and GRMZM2G076029 in maize correspond to OsPEX1 in rice, a protein similar to extension proteins that are implicated in lignin biosynthesis, plant growth promotion, and the negative regulation of root growth through gibberellin-mediated pathways. The candidate gene corresponding to AX-108097244 is GRMZM2G464754; previous studies have reported its involvement in regulating EH in maize. These findings enhance the understanding of QTL associated with maize plant-type traits and provide a foundation for cloning PH, EH-related genes. Therefore, the results also support the development of functional markers for target genes and the breeding of improved maize varieties.
Collapse
Affiliation(s)
- Changjin Wang
- College of Agriculture, Anhui Science and Technology University, Fengyang 233100, China; (C.W.); (W.H.); (K.L.); (Y.Y.); (X.Z.); (S.Y.); (Y.W.); (L.Y.); (W.H.); (H.Y.)
- Engineering Technology Institute of Maize Breeding in Anhui Province, Fengyang 233100, China
| | - Wangfei He
- College of Agriculture, Anhui Science and Technology University, Fengyang 233100, China; (C.W.); (W.H.); (K.L.); (Y.Y.); (X.Z.); (S.Y.); (Y.W.); (L.Y.); (W.H.); (H.Y.)
| | - Keyu Li
- College of Agriculture, Anhui Science and Technology University, Fengyang 233100, China; (C.W.); (W.H.); (K.L.); (Y.Y.); (X.Z.); (S.Y.); (Y.W.); (L.Y.); (W.H.); (H.Y.)
| | - Yulin Yu
- College of Agriculture, Anhui Science and Technology University, Fengyang 233100, China; (C.W.); (W.H.); (K.L.); (Y.Y.); (X.Z.); (S.Y.); (Y.W.); (L.Y.); (W.H.); (H.Y.)
| | - Xueshi Zhang
- College of Agriculture, Anhui Science and Technology University, Fengyang 233100, China; (C.W.); (W.H.); (K.L.); (Y.Y.); (X.Z.); (S.Y.); (Y.W.); (L.Y.); (W.H.); (H.Y.)
| | - Shuo Yang
- College of Agriculture, Anhui Science and Technology University, Fengyang 233100, China; (C.W.); (W.H.); (K.L.); (Y.Y.); (X.Z.); (S.Y.); (Y.W.); (L.Y.); (W.H.); (H.Y.)
| | - Yongfu Wang
- College of Agriculture, Anhui Science and Technology University, Fengyang 233100, China; (C.W.); (W.H.); (K.L.); (Y.Y.); (X.Z.); (S.Y.); (Y.W.); (L.Y.); (W.H.); (H.Y.)
- Engineering Technology Institute of Maize Breeding in Anhui Province, Fengyang 233100, China
| | - Li Yu
- College of Agriculture, Anhui Science and Technology University, Fengyang 233100, China; (C.W.); (W.H.); (K.L.); (Y.Y.); (X.Z.); (S.Y.); (Y.W.); (L.Y.); (W.H.); (H.Y.)
- Engineering Technology Institute of Maize Breeding in Anhui Province, Fengyang 233100, China
| | - Weidong Huang
- College of Agriculture, Anhui Science and Technology University, Fengyang 233100, China; (C.W.); (W.H.); (K.L.); (Y.Y.); (X.Z.); (S.Y.); (Y.W.); (L.Y.); (W.H.); (H.Y.)
- Engineering Technology Institute of Maize Breeding in Anhui Province, Fengyang 233100, China
| | - Haibing Yu
- College of Agriculture, Anhui Science and Technology University, Fengyang 233100, China; (C.W.); (W.H.); (K.L.); (Y.Y.); (X.Z.); (S.Y.); (Y.W.); (L.Y.); (W.H.); (H.Y.)
- Engineering Technology Institute of Maize Breeding in Anhui Province, Fengyang 233100, China
| | - Lei Chen
- College of Agriculture, Anhui Science and Technology University, Fengyang 233100, China; (C.W.); (W.H.); (K.L.); (Y.Y.); (X.Z.); (S.Y.); (Y.W.); (L.Y.); (W.H.); (H.Y.)
- Engineering Technology Institute of Maize Breeding in Anhui Province, Fengyang 233100, China
| | - Xinxin Cheng
- College of Agriculture, Anhui Science and Technology University, Fengyang 233100, China; (C.W.); (W.H.); (K.L.); (Y.Y.); (X.Z.); (S.Y.); (Y.W.); (L.Y.); (W.H.); (H.Y.)
- Engineering Technology Institute of Maize Breeding in Anhui Province, Fengyang 233100, China
| |
Collapse
|
3
|
Saß A, Schneider R. Novel molecular insights into the machinery driving secondary cell wall synthesis and patterning. CURRENT OPINION IN PLANT BIOLOGY 2024; 81:102614. [PMID: 39142254 DOI: 10.1016/j.pbi.2024.102614] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2024] [Revised: 07/15/2024] [Accepted: 07/19/2024] [Indexed: 08/16/2024]
Abstract
The essential role of water-conducting xylem tissue in plant growth and crop yield is well-established. However, the molecular mechanisms underlying xylem formation and its unique functionality, which is acquired post-mortem, remain poorly understood. Recent advancements in genetic tools and model systems have significantly enhanced the ability to microscopically study xylem development, particularly its distinctive cell wall patterning. Early molecular mechanisms enabling pattern formation have been elucidated and validated through computational models. Despite these advancements, numerous questions remain unresolved but are approachable with current methodologies. This mini-review takes in the latest research findings in xylem cell wall synthesis and patterning and highlights prospective directions for future investigations.
Collapse
Affiliation(s)
- Annika Saß
- Institute of Biochemistry and Biology, Plant Physiology Department, University of Potsdam, 14476 Potsdam-Golm, Germany; Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany
| | - René Schneider
- Institute of Biochemistry and Biology, Plant Physiology Department, University of Potsdam, 14476 Potsdam-Golm, Germany.
| |
Collapse
|
4
|
Peng A, Li S, Wang Y, Cheng F, Chen J, Zheng X, Xiong J, Ding G, Zhang B, Zhai W, Song L, Wei W, Chen L. Mining Candidate Genes for Leaf Angle in Brassica napus L. by Combining QTL Mapping and RNA Sequencing Analysis. Int J Mol Sci 2024; 25:9325. [PMID: 39273273 PMCID: PMC11394825 DOI: 10.3390/ijms25179325] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2024] [Revised: 08/15/2024] [Accepted: 08/25/2024] [Indexed: 09/15/2024] Open
Abstract
Leaf angle (LA) is an important trait of plant architecture, and individuals with narrow LA can better capture canopy light under high-density planting, which is beneficial for increasing the overall yield per unit area. To study the genetic basis and molecular regulation mechanism of leaf angle in rapeseed, we carried out a series of experiments. Quantitative trait loci (QTL) mapping was performed using the RIL population, and seven QTLs were identified. Transcriptome analysis showed that the cell wall formation/biogenesis processes and biosynthesis/metabolism of cell wall components were the most enrichment classes. Most differentially expressed genes (DEGs) involved in the synthesis of lignin, xylan, and cellulose showed down-regulated expression in narrow leaf material. Microscopic analysis suggested that the cell size affected by the cell wall in the junction area of the stem and petiole was the main factor in leaf petiole angle (LPA) differences. Combining QTL mapping and RNA sequencing, five promising candidate genes BnaA01G0125600ZS, BnaA01G0135700ZS, BnaA01G0154600ZS, BnaA10G0154200ZS, and BnaC03G0294200ZS were identified in rapeseed, and most of them were involved in cell wall biogenesis and the synthesis/metabolism of cell wall components. The results of QTL, transcriptome analysis, and cytological analysis were highly consistent, collectively revealing that genes related to cell wall function played a crucial role in regulating the LA trait in rapeseed. The study provides further insights into LA traits, and the discovery of new QTLs and candidate genes is highly beneficial for genetic improvement.
Collapse
Affiliation(s)
- Aoyi Peng
- College of Agriculture, Yangtze University, Jingzhou 434025, China
| | - Shuyu Li
- Jiangxi Province Key Laboratory of Oil Crops Genetic Improvement (2024SSY04031), Nanchang 330200, China
- Crop Institute, Jiangxi Academy of Agricultural Sciences, Nanchang 330200, China
| | - Yuwen Wang
- Jiangxi Province Key Laboratory of Oil Crops Genetic Improvement (2024SSY04031), Nanchang 330200, China
- Crop Institute, Jiangxi Academy of Agricultural Sciences, Nanchang 330200, China
| | - Fengjie Cheng
- College of Agriculture, Yangtze University, Jingzhou 434025, China
| | - Jun Chen
- Fuzhou Teachers' College, East China University of Technology, Fuzhou 344000, China
| | - Xiaoxiao Zheng
- Jiangxi Province Key Laboratory of Oil Crops Genetic Improvement (2024SSY04031), Nanchang 330200, China
- Crop Institute, Jiangxi Academy of Agricultural Sciences, Nanchang 330200, China
| | - Jie Xiong
- Jiangxi Province Key Laboratory of Oil Crops Genetic Improvement (2024SSY04031), Nanchang 330200, China
- Crop Institute, Jiangxi Academy of Agricultural Sciences, Nanchang 330200, China
| | - Ge Ding
- Jiangxi Province Key Laboratory of Oil Crops Genetic Improvement (2024SSY04031), Nanchang 330200, China
- Crop Institute, Jiangxi Academy of Agricultural Sciences, Nanchang 330200, China
| | - Bingchao Zhang
- Jiangxi Province Key Laboratory of Oil Crops Genetic Improvement (2024SSY04031), Nanchang 330200, China
- Crop Institute, Jiangxi Academy of Agricultural Sciences, Nanchang 330200, China
| | - Wen Zhai
- Fuzhou Teachers' College, East China University of Technology, Fuzhou 344000, China
| | - Laiqiang Song
- Jiangxi Province Key Laboratory of Oil Crops Genetic Improvement (2024SSY04031), Nanchang 330200, China
- Crop Institute, Jiangxi Academy of Agricultural Sciences, Nanchang 330200, China
| | - Wenliang Wei
- College of Agriculture, Yangtze University, Jingzhou 434025, China
| | - Lunlin Chen
- Jiangxi Province Key Laboratory of Oil Crops Genetic Improvement (2024SSY04031), Nanchang 330200, China
- Crop Institute, Jiangxi Academy of Agricultural Sciences, Nanchang 330200, China
| |
Collapse
|
5
|
Lucas J, Geisler M. Plant Kinesin Repertoires Expand with New Domain Architecture and Contract with the Loss of Flagella. J Mol Evol 2024; 92:381-401. [PMID: 38926179 DOI: 10.1007/s00239-024-10178-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2023] [Accepted: 05/20/2024] [Indexed: 06/28/2024]
Abstract
Kinesins are eukaryotic microtubule motor proteins subdivided into conserved families with distinct functional roles. While many kinesin families are widespread in eukaryotes, each organismal lineage maintains a unique kinesin repertoire composed of many families with distinct numbers of genes. Previous genomic surveys indicated that land plant kinesin repertoires differ markedly from other eukaryotes. To determine when repertoires diverged during plant evolution, we performed robust phylogenomic analyses of kinesins in 24 representative plants, two algae, two animals, and one yeast. These analyses show that kinesin repertoires expand and contract coincident with major shifts in the biology of algae and land plants. One kinesin family and five subfamilies, each defined by unique domain architectures, emerged in the green algae. Four of those kinesin groups expanded in ancestors of modern land plants, while six other kinesin groups were lost in the ancestors of pollen-bearing plants. Expansions of different kinesin families and subfamilies occurred in moss and angiosperm lineages. Other kinesin families remained stable and did not expand throughout plant evolution. Collectively these data support a radiation of kinesin domain architectures in algae followed by differential positive and negative selection on kinesins families and subfamilies in different lineages of land plants.
Collapse
Affiliation(s)
- Jessica Lucas
- Department of Biology, University of Wisconsin-Oshkosh, 800 Algoma Blvd, Oshkosh, WI, 54901, USA.
| | - Matt Geisler
- School of Biological Science, Southern Illinois University, Carbondale, IL, 54901, USA
| |
Collapse
|
6
|
Delmer D, Dixon RA, Keegstra K, Mohnen D. The plant cell wall-dynamic, strong, and adaptable-is a natural shapeshifter. THE PLANT CELL 2024; 36:1257-1311. [PMID: 38301734 PMCID: PMC11062476 DOI: 10.1093/plcell/koad325] [Citation(s) in RCA: 28] [Impact Index Per Article: 28.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Accepted: 12/19/2023] [Indexed: 02/03/2024]
Abstract
Mythology is replete with good and evil shapeshifters, who, by definition, display great adaptability and assume many different forms-with several even turning themselves into trees. Cell walls certainly fit this definition as they can undergo subtle or dramatic changes in structure, assume many shapes, and perform many functions. In this review, we cover the evolution of knowledge of the structures, biosynthesis, and functions of the 5 major cell wall polymer types that range from deceptively simple to fiendishly complex. Along the way, we recognize some of the colorful historical figures who shaped cell wall research over the past 100 years. The shapeshifter analogy emerges more clearly as we examine the evolving proposals for how cell walls are constructed to allow growth while remaining strong, the complex signaling involved in maintaining cell wall integrity and defense against disease, and the ways cell walls adapt as they progress from birth, through growth to maturation, and in the end, often function long after cell death. We predict the next century of progress will include deciphering cell type-specific wall polymers; regulation at all levels of polymer production, crosslinks, and architecture; and how walls respond to developmental and environmental signals to drive plant success in diverse environments.
Collapse
Affiliation(s)
- Deborah Delmer
- Section of Plant Biology, University of California Davis, Davis, CA 95616, USA
| | - Richard A Dixon
- BioDiscovery Institute and Department of Biological Sciences, University of North Texas, Denton, TX 76203, USA
| | - Kenneth Keegstra
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI 48823, USA
| | - Debra Mohnen
- Complex Carbohydrate Research Center and Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602, USA
| |
Collapse
|
7
|
Gao JP, Liang W, Liu CW, Xie F, Murray JD. Unraveling the rhizobial infection thread. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:2235-2245. [PMID: 38262702 DOI: 10.1093/jxb/erae017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2023] [Accepted: 01/23/2024] [Indexed: 01/25/2024]
Abstract
Most legumes can form an endosymbiotic association with soil bacteria called rhizobia, which colonize specialized root structures called nodules where they fix nitrogen. To colonize nodule cells, rhizobia must first traverse the epidermis and outer cortical cell layers of the root. In most legumes, this involves formation of the infection thread, an intracellular structure that becomes colonized by rhizobia, guiding their passage through the outer cell layers of the root and into the newly formed nodule cells. In this brief review, we recount the early research milestones relating to the rhizobial infection thread and highlight two relatively recent advances in the symbiotic infection mechanism, the eukaryotically conserved 'MYB-AUR1-MAP' mitotic module, which links cytokinesis mechanisms to intracellular infection, and the discovery of the 'infectosome' complex, which guides infection thread growth. We also discuss the potential intertwining of the two modules and the hypothesis that cytokinesis served as a foundation for intracellular infection of symbiotic microbes.
Collapse
Affiliation(s)
- Jin-Peng Gao
- National Key Laboratory of Plant Molecular Genetics, Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China
| | - Wenjie Liang
- National Key Laboratory of Plant Molecular Genetics, Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China
| | - Cheng-Wu Liu
- School of Life Sciences, Division of Life Sciences and Medicine, MOE Key Laboratory for Membraneless Organelles and Cellular Dynamics, University of Science and Technology of China, Hefei 230026, China
| | - Fang Xie
- National Key Laboratory of Plant Molecular Genetics, Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China
| | - Jeremy D Murray
- National Key Laboratory of Plant Molecular Genetics, Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China
- John Innes Centre, CAS-JIC Centre of Excellence for Plant and Microbial Science (CEPAMS), Norwich Research Park, Norwich NR4 7UH, UK
| |
Collapse
|
8
|
Bali S, Gleason C. Unveiling the Diversity: Plant Parasitic Nematode Effectors and Their Plant Interaction Partners. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2024; 37:179-189. [PMID: 37870371 DOI: 10.1094/mpmi-09-23-0124-fi] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/24/2023]
Abstract
Root-knot and cyst nematodes are two groups of plant parasitic nematodes that cause the majority of crop losses in agriculture. As a result, these nematodes are the focus of most nematode effector research. Root-knot and cyst nematode effectors are defined as secreted molecules, typically proteins, with crucial roles in nematode parasitism. There are likely hundreds of secreted effector molecules exuded through the nematode stylet into the plant. The current research has shown that nematode effectors can target a variety of host proteins and have impacts that include the suppression of plant immune responses and the manipulation of host hormone signaling. The discovery of effectors that localize to the nucleus indicates that the nematodes can directly modulate host gene expression for cellular reprogramming during feeding site formation. In addition, plant peptide mimicry by some nematode effectors highlights the sophisticated strategies the nematodes employ to manipulate host processes. Here we describe research on the interactions between nematode effectors and host proteins that will provide insights into the molecular mechanisms underpinning plant-nematode interactions. By identifying the host proteins and pathways that are targeted by root-knot and cyst nematode effectors, scientists can gain a better understanding of how nematodes establish feeding sites and subvert plant immune responses. Such information will be invaluable for future engineering of nematode-resistant crops, ultimately fostering advancements in agricultural practices and crop protection. [Formula: see text] The author(s) have dedicated the work to the public domain under the Creative Commons CC0 "No Rights Reserved" license by waiving all of his or her rights to the work worldwide under copyright law, including all related and neighboring rights, to the extent allowed by law, 2024.
Collapse
Affiliation(s)
- Sapinder Bali
- Department of Plant Pathology, Washington State University, Pullman, WA 99164, U.S.A
| | - Cynthia Gleason
- Department of Plant Pathology, Washington State University, Pullman, WA 99164, U.S.A
| |
Collapse
|
9
|
Hao F, Liu X, Zhou B, Tian Z, Zhou L, Zong H, Qi J, He J, Zhang Y, Zeng P, Li Q, Wang K, Xia K, Guo X, Li L, Shao W, Zhang B, Li S, Yang H, Hui L, Chen W, Peng L, Liu F, Rong ZQ, Peng Y, Zhu W, McCallum JA, Li Z, Xu X, Yang H, Macknight RC, Wang W, Cai J. Chromosome-level genomes of three key Allium crops and their trait evolution. Nat Genet 2023; 55:1976-1986. [PMID: 37932434 DOI: 10.1038/s41588-023-01546-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2021] [Accepted: 09/20/2023] [Indexed: 11/08/2023]
Abstract
Allium crop breeding remains severely hindered due to the lack of high-quality reference genomes. Here we report high-quality chromosome-level genome assemblies for three key Allium crops (Welsh onion, garlic and onion), which are 11.17 Gb, 15.52 Gb and 15.78 Gb in size with the highest recorded contig N50 of 507.27 Mb, 109.82 Mb and 81.66 Mb, respectively. Beyond revealing the genome evolutionary process of Allium species, our pathogen infection experiments and comparative metabolomic and genomic analyses showed that genes encoding enzymes involved in the metabolic pathway of Allium-specific flavor compounds may have evolved from an ancient uncharacterized plant defense system widely existing in many plant lineages but extensively boosted in alliums. Using in situ hybridization and spatial RNA sequencing, we obtained an overview of cell-type categorization and gene expression changes associated with spongy mesophyll cell expansion during onion bulb formation, thus indicating the functional roles of bulb formation genes.
Collapse
Affiliation(s)
- Fei Hao
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, China
- Center of Special Environmental Biomechanics & Biomedical Engineering, School of Life Sciences, Northwestern Polytechnical University, Xi'an, China
| | - Xue Liu
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, China
| | - Botong Zhou
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, China
| | - Zunzhe Tian
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, China
| | - Lina Zhou
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, China
| | - Hang Zong
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, China
| | - Jiyan Qi
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, China
| | - Juan He
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, China
| | - Yongting Zhang
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, China
| | - Peng Zeng
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, China
| | - Qiong Li
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, China
| | - Kai Wang
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, China
| | - Keke Xia
- State Key Laboratory of Agricultural Genomics, BGI, Shenzhen, China
| | - Xing Guo
- State Key Laboratory of Agricultural Genomics, BGI, Shenzhen, China
- BGI Research, Wuhan, China
| | - Li Li
- State Key Laboratory of Agricultural Genomics, BGI, Shenzhen, China
| | - Wenwen Shao
- State Key Laboratory of Agricultural Genomics, BGI, Shenzhen, China
| | | | - Shengkang Li
- State Key Laboratory of Agricultural Genomics, BGI, Shenzhen, China
| | - Haifeng Yang
- Lianyungang Academy of Agricultural Sciences, Lianyungang, China
| | - Linchong Hui
- Lianyungang Academy of Agricultural Sciences, Lianyungang, China
| | - Wei Chen
- Lianyungang Academy of Agricultural Sciences, Lianyungang, China
| | - Lixin Peng
- National Engineering Research Center for Non-Food Biorefinery, Guangxi Academy of Sciences, Nanning, China
| | - Feipeng Liu
- Frontiers Science Center for Flexible Electronics (FSCFE), Shaanxi Institute of Flexible Electronics (SIFE) & Shaanxi Institute of Biomedical Materials and Engineering (SIBME), Northwestern Polytechnical University, Xi'an, China
| | - Zi-Qiang Rong
- Frontiers Science Center for Flexible Electronics (FSCFE), Shaanxi Institute of Flexible Electronics (SIFE) & Shaanxi Institute of Biomedical Materials and Engineering (SIBME), Northwestern Polytechnical University, Xi'an, China
| | - Yingmei Peng
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, China
| | - Wenbo Zhu
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, China
| | - John A McCallum
- The New Zealand Institute for Plant and Food Research, Christchurch, New Zealand
| | - Zhen Li
- Department of Plant Biotechnology and Bioinformatics, Ghent University and VIB Center for Plant Systems Biology, Ghent, Belgium
| | - Xun Xu
- State Key Laboratory of Agricultural Genomics, BGI, Shenzhen, China.
- Guangdong Provincial Key Laboratory of Genome Read and Write, Shenzhen, China.
| | - Hui Yang
- Center of Special Environmental Biomechanics & Biomedical Engineering, School of Life Sciences, Northwestern Polytechnical University, Xi'an, China.
| | | | - Wen Wang
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, China.
| | - Jing Cai
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, China.
| |
Collapse
|
10
|
Tyagi A, Ali S, Park S, Bae H. Deciphering the role of mechanosensitive channels in plant root biology: perception, signaling, and adaptive responses. PLANTA 2023; 258:105. [PMID: 37878056 DOI: 10.1007/s00425-023-04261-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2023] [Accepted: 10/02/2023] [Indexed: 10/26/2023]
Abstract
MAIN CONCLUSION Mechanosensitive channels are integral membrane proteins that rapidly translate extrinsic or intrinsic mechanical tensions into biological responses. They can serve as potential candidates for developing smart-resilient crops with efficient root systems. Mechanosensitive (MS) calcium channels are molecular switches for mechanoperception and signal transduction in all living organisms. Although tremendous progress has been made in understanding mechanoperception and signal transduction in bacteria and animals, this remains largely unknown in plants. However, identification and validation of MS channels such as Mid1-complementing activity channels (MCAs), mechanosensitive-like channels (MSLs), and Piezo channels (PIEZO) has been the most significant discovery in plant mechanobiology, providing novel insights into plant mechanoperception. This review summarizes recent advances in root mechanobiology, focusing on MS channels and their related signaling players, such as calcium ions (Ca2+), reactive oxygen species (ROS), and phytohormones. Despite significant advances in understanding the role of Ca2+ signaling in root biology, little is known about the involvement of MS channel-driven Ca2+ and ROS signaling. Additionally, the hotspots connecting the upstream and downstream signaling of MS channels remain unclear. In light of this, we discuss the present knowledge of MS channels in root biology and their role in root developmental and adaptive traits. We also provide a model highlighting upstream (cell wall sensors) and downstream signaling players, viz., Ca2+, ROS, and hormones, connected with MS channels. Furthermore, we highlighted the importance of emerging signaling molecules, such as nitric oxide (NO), hydrogen sulfide (H2S), and neurotransmitters (NTs), and their association with root mechanoperception. Finally, we conclude with future directions and knowledge gaps that warrant further research to decipher the complexity of root mechanosensing.
Collapse
Affiliation(s)
- Anshika Tyagi
- Department of Biotechnology, Yeungnam University, Gyeongsan Gyeongbuk, 38541, Republic of Korea.
| | - Sajad Ali
- Department of Biotechnology, Yeungnam University, Gyeongsan Gyeongbuk, 38541, Republic of Korea
| | - Suvin Park
- Department of Biotechnology, Yeungnam University, Gyeongsan Gyeongbuk, 38541, Republic of Korea
| | - Hanhong Bae
- Department of Biotechnology, Yeungnam University, Gyeongsan Gyeongbuk, 38541, Republic of Korea.
| |
Collapse
|
11
|
Pedersen GB, Blaschek L, Frandsen KEH, Noack LC, Persson S. Cellulose synthesis in land plants. MOLECULAR PLANT 2023; 16:206-231. [PMID: 36564945 DOI: 10.1016/j.molp.2022.12.015] [Citation(s) in RCA: 30] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2022] [Revised: 12/19/2022] [Accepted: 12/21/2022] [Indexed: 06/17/2023]
Abstract
All plant cells are surrounded by a cell wall that provides cohesion, protection, and a means of directional growth to plants. Cellulose microfibrils contribute the main biomechanical scaffold for most of these walls. The biosynthesis of cellulose, which typically is the most prominent constituent of the cell wall and therefore Earth's most abundant biopolymer, is finely attuned to developmental and environmental cues. Our understanding of the machinery that catalyzes and regulates cellulose biosynthesis has substantially improved due to recent technological advances in, for example, structural biology and microscopy. Here, we provide a comprehensive overview of the structure, function, and regulation of the cellulose synthesis machinery and its regulatory interactors. We aim to highlight important knowledge gaps in the field, and outline emerging approaches that promise a means to close those gaps.
Collapse
Affiliation(s)
- Gustav B Pedersen
- Copenhagen Plant Science Center (CPSC), Department of Plant & Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871, Frederiksberg C, Denmark
| | - Leonard Blaschek
- Copenhagen Plant Science Center (CPSC), Department of Plant & Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871, Frederiksberg C, Denmark
| | - Kristian E H Frandsen
- Copenhagen Plant Science Center (CPSC), Department of Plant & Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871, Frederiksberg C, Denmark
| | - Lise C Noack
- Copenhagen Plant Science Center (CPSC), Department of Plant & Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871, Frederiksberg C, Denmark
| | - Staffan Persson
- Copenhagen Plant Science Center (CPSC), Department of Plant & Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871, Frederiksberg C, Denmark; Joint International Research Laboratory of Metabolic & Developmental Sciences, State Key Laboratory of Hybrid Rice, SJTU-University of Adelaide Joint Centre for Agriculture and Health, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
| |
Collapse
|
12
|
Chen G, Xuan W, Zhao P, Yao X, Peng C, Tian Y, Ye J, Wang B, He J, Chi W, Yu J, Ge Y, Li J, Dai Z, Xu D, Wang C, Wan J. OsTUB1 confers salt insensitivity by interacting with Kinesin13A to stabilize microtubules and ion transporters in rice. THE NEW PHYTOLOGIST 2022; 235:1836-1852. [PMID: 35643887 DOI: 10.1111/nph.18282] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2022] [Accepted: 05/15/2022] [Indexed: 06/15/2023]
Abstract
Salt stress is one of the major environmental factors limiting plant growth and development. Although microtubule (MT) organization is known to be involved in response to salt stress, few tubulin genes have been identified that confer salt insensitivity in plants. In this study, we identified a MT encoding gene, OsTUB1, that increased the survival rate of rice plants under salt stress by stabilizing MT organization and ion transporters. We found that OsTUB1 interacted with Kinesin13A protein, which was essential for OsTUB1-regulated MT organization under salt stress. Further molecular evidence revealed that a OsTUB1-Kinesin13A complex protected rice from salt stress by sustaining membrane-localized Na+ transporter OsHKT1;5, a key regulator of ionic homeostasis. Our results shed light on the function of tubulin and kinesin in regulating MT organization and stabilizing Na+ transporters and Na+ flux at the plasma membrane in rice. The identification of the OsTUB1-Kinesin13A complex provides novel genes for salt insensitivity rice breeding in areas with high soil salinity.
Collapse
Affiliation(s)
- Gaoming Chen
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Centre for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, China
- Southern Japonica Rice R&D Corporation Ltd, Key Laboratory of Biology, Genetics and Breeding of Japonica Rice in the Mid-lower Yangtze River, Ministry of Agriculture, Nanjing, 210095, China
| | - Wei Xuan
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Centre for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, China
- MOA Key Laboratory of Plant Nutrition and Fertilization in Lower-Middle Reaches of the Yangtze River, Nanjing Agricultural University, Nanjing, 210095, China
| | - Pingzhi Zhao
- CAS Center for Excellence in Biotic Interactions, University of Chinese Academy of Sciences, State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China
| | - Xiangmei Yao
- CAS Center for Excellence in Biotic Interactions, University of Chinese Academy of Sciences, State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China
| | - Chao Peng
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Centre for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, China
- Southern Japonica Rice R&D Corporation Ltd, Key Laboratory of Biology, Genetics and Breeding of Japonica Rice in the Mid-lower Yangtze River, Ministry of Agriculture, Nanjing, 210095, China
| | - Yunlu Tian
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Centre for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, China
- Southern Japonica Rice R&D Corporation Ltd, Key Laboratory of Biology, Genetics and Breeding of Japonica Rice in the Mid-lower Yangtze River, Ministry of Agriculture, Nanjing, 210095, China
| | - Jian Ye
- CAS Center for Excellence in Biotic Interactions, University of Chinese Academy of Sciences, State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China
| | - Baoxiang Wang
- Lianyungang Academy of Agricultural Science, Lianyungang, Jiangsu Province, 222000, China
| | - Jun He
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Centre for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, China
- Southern Japonica Rice R&D Corporation Ltd, Key Laboratory of Biology, Genetics and Breeding of Japonica Rice in the Mid-lower Yangtze River, Ministry of Agriculture, Nanjing, 210095, China
| | - Wenchao Chi
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Centre for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, China
- Southern Japonica Rice R&D Corporation Ltd, Key Laboratory of Biology, Genetics and Breeding of Japonica Rice in the Mid-lower Yangtze River, Ministry of Agriculture, Nanjing, 210095, China
| | - Jun Yu
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Centre for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, China
- Southern Japonica Rice R&D Corporation Ltd, Key Laboratory of Biology, Genetics and Breeding of Japonica Rice in the Mid-lower Yangtze River, Ministry of Agriculture, Nanjing, 210095, China
| | - Yuwei Ge
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Centre for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, China
- Southern Japonica Rice R&D Corporation Ltd, Key Laboratory of Biology, Genetics and Breeding of Japonica Rice in the Mid-lower Yangtze River, Ministry of Agriculture, Nanjing, 210095, China
| | - Jin Li
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Centre for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, China
- Southern Japonica Rice R&D Corporation Ltd, Key Laboratory of Biology, Genetics and Breeding of Japonica Rice in the Mid-lower Yangtze River, Ministry of Agriculture, Nanjing, 210095, China
| | - Zhaoyang Dai
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Centre for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, China
- Southern Japonica Rice R&D Corporation Ltd, Key Laboratory of Biology, Genetics and Breeding of Japonica Rice in the Mid-lower Yangtze River, Ministry of Agriculture, Nanjing, 210095, China
| | - Dayong Xu
- Lianyungang Academy of Agricultural Science, Lianyungang, Jiangsu Province, 222000, China
| | - Chunming Wang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Centre for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, China
- Southern Japonica Rice R&D Corporation Ltd, Key Laboratory of Biology, Genetics and Breeding of Japonica Rice in the Mid-lower Yangtze River, Ministry of Agriculture, Nanjing, 210095, China
| | - Jianmin Wan
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Centre for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, China
- National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| |
Collapse
|
13
|
Yang B, Stamm G, Bürstenbinder K, Voiniciuc C. Microtubule-associated IQD9 orchestrates cellulose patterning in seed mucilage. THE NEW PHYTOLOGIST 2022; 235:1096-1110. [PMID: 35488480 DOI: 10.1111/nph.18188] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2021] [Accepted: 04/20/2022] [Indexed: 06/14/2023]
Abstract
Arabidopsis seeds release large capsules of mucilaginous polysaccharides, which are shaped by an intricate network of cellulosic microfibrils. Cellulose synthase complexes are guided by the microtubule cytoskeleton, but it is unclear which proteins mediate this process in the seed coat epidermis. Using reverse genetics, we identified IQ67 DOMAIN 9 (IQD9) and KINESIN LIGHT CHAIN-RELATED 1 (KLCR1) as two highly expressed genes during seed development and comprehensively characterized their roles in cell wall polysaccharide biosynthesis. Mutations in IQD9 as well as in KLCR1 lead to compact mucilage capsules with aberrant cellulose distribution, which can be rescued by transgene complementation. IQD9 physically interacts with KLCR1 and localizes to cortical microtubules (MTs) to maintain their organization in seed coat epidermal (SCE) cells. IQD9 as well as a previously identified TONNEAU1 (TON1) RECRUITING MOTIF 4 (TRM4) protein act to maintain cellulose synthase velocity. Our results demonstrate that IQD9, KLCR1 and TRM4 are MT-associated proteins that are required for seed mucilage architecture. This study provides the first direct evidence that members of the IQD, KLCR and TRM families have overlapping roles in cell wall biosynthesis. Therefore, SCE cells provide an attractive system to further decipher the complex genetic regulation of polarized cellulose deposition.
Collapse
Affiliation(s)
- Bo Yang
- Independent Junior Research Group-Designer Glycans, Leibniz Institute of Plant Biochemistry, 06120, Halle (Saale), Germany
| | - Gina Stamm
- Department of Molecular Signal Processing, Leibniz Institute of Plant Biochemistry, 06120, Halle (Saale), Germany
| | - Katharina Bürstenbinder
- Department of Molecular Signal Processing, Leibniz Institute of Plant Biochemistry, 06120, Halle (Saale), Germany
| | - Cătălin Voiniciuc
- Independent Junior Research Group-Designer Glycans, Leibniz Institute of Plant Biochemistry, 06120, Halle (Saale), Germany
- Horticultural Sciences Department, University of Florida, Gainesville, FL, 32611, USA
| |
Collapse
|
14
|
Cai G. The legacy of kinesins in the pollen tube thirty years later. Cytoskeleton (Hoboken) 2022; 79:8-19. [PMID: 35766009 PMCID: PMC9542081 DOI: 10.1002/cm.21713] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2022] [Revised: 06/06/2022] [Accepted: 06/27/2022] [Indexed: 11/10/2022]
Abstract
The pollen tube is fundamental in the reproduction of seed plants. Particularly in angiosperms, we now have much information about how it grows, how it senses extracellular signals, and how it converts them into a directional growth mechanism. The expansion of the pollen tube is also related to dynamic cytoplasmic processes based on the cytoskeleton (such as polymerization/depolymerization of microtubules and actin filaments) or motor activity along with the two cytoskeletal systems and is dependent on motor proteins. While a considerable amount of information is available for the actomyosin system in the pollen tube, the role of microtubules in the transport of organelles or macromolecular structures is still quite uncertain despite that 30 years ago the first work on the presence of kinesins in the pollen tube was published. Since then, progress has been made in elucidating the role of kinesins in plant cells. However, their role within the pollen tube is still enigmatic. In this review, I will postulate some roles of kinesins in the pollen tube 30 years after their initial discovery based on information obtained in other plant cells in the meantime. The most concrete hypotheses predict that kinesins in the pollen tube enable the short movement of specific organelles or contribute to generative cell or sperm cell transport, as well as mediate specific steps in the process of endocytosis.
Collapse
Affiliation(s)
- Giampiero Cai
- Dipartimento Scienze della Vita, Università di Siena, via Mattioli 4, Siena, Italy
| |
Collapse
|
15
|
Parrotta L, Faleri C, Del Casino C, Mareri L, Aloisi I, Guerriero G, Hausman JF, Del Duca S, Cai G. Biochemical and cytological interactions between callose synthase and microtubules in the tobacco pollen tube. PLANT CELL REPORTS 2022; 41:1301-1318. [PMID: 35303156 PMCID: PMC9110548 DOI: 10.1007/s00299-022-02860-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Accepted: 03/02/2022] [Indexed: 06/09/2023]
Abstract
KEY MESSAGE The article concerns the association between callose synthase and cytoskeleton by biochemical and ultrastructural analyses in the pollen tube. Results confirmed this association and immunogold labeling showed a colocalization. Callose is a cell wall polysaccharide involved in fundamental biological processes, from plant development to the response to abiotic and biotic stress. To gain insight into the deposition pattern of callose, it is important to know how the enzyme callose synthase is regulated through the interaction with the vesicle-cytoskeletal system. Actin filaments likely determine the long-range distribution of callose synthase through transport vesicles but the spatial/biochemical relationships between callose synthase and microtubules are poorly understood, although experimental evidence supports the association between callose synthase and tubulin. In this manuscript, we further investigated the association between callose synthase and microtubules through biochemical and ultrastructural analyses in the pollen tube model system, where callose is an essential component of the cell wall. Results by native 2-D electrophoresis, isolation of callose synthase complex and far-western blot confirmed that callose synthase is associated with tubulin and can therefore interface with cortical microtubules. In contrast, actin and sucrose synthase were not permanently associated with callose synthase. Immunogold labeling showed colocalization between the enzyme and microtubules, occasionally mediated by vesicles. Overall, the data indicate that pollen tube callose synthase exerts its activity in cooperation with the microtubular cytoskeleton.
Collapse
Affiliation(s)
- Luigi Parrotta
- Department of Biological, Geological and Environmental Sciences, University of Bologna, Via Irnerio 42, 40126, Bologna, Italy.
- Interdepartmental Centre for Agri-Food Industrial Research, University of Bologna, Via Quinto Bucci 336, 47521, Cesena, Italy.
| | - Claudia Faleri
- Department of Life Sciences, University of Siena, Via P.A. Mattioli 4, 53100, Siena, Italy
| | - Cecilia Del Casino
- Department of Life Sciences, University of Siena, Via P.A. Mattioli 4, 53100, Siena, Italy
| | - Lavinia Mareri
- Department of Life Sciences, University of Siena, Via P.A. Mattioli 4, 53100, Siena, Italy
| | - Iris Aloisi
- Department of Biological, Geological and Environmental Sciences, University of Bologna, Via Irnerio 42, 40126, Bologna, Italy
| | - Gea Guerriero
- Research and Innovation Department, Luxembourg Institute of Science and Technology, 5 Avenue des Hauts-Fourneaux, 4362, Esch/Alzette, Luxembourg
| | - Jean-Francois Hausman
- Research and Innovation Department, Luxembourg Institute of Science and Technology, 5 Avenue des Hauts-Fourneaux, 4362, Esch/Alzette, Luxembourg
| | - Stefano Del Duca
- Department of Biological, Geological and Environmental Sciences, University of Bologna, Via Irnerio 42, 40126, Bologna, Italy
- Interdepartmental Centre for Agri-Food Industrial Research, University of Bologna, Via Quinto Bucci 336, 47521, Cesena, Italy
| | - Giampiero Cai
- Department of Life Sciences, University of Siena, Via P.A. Mattioli 4, 53100, Siena, Italy
| |
Collapse
|
16
|
Angelini J, Klassen R, Široká J, Novák O, Záruba K, Siegel J, Novotná Z, Valentová O. Silver Nanoparticles Alter Microtubule Arrangement, Dynamics and Stress Phytohormone Levels. PLANTS 2022; 11:plants11030313. [PMID: 35161294 PMCID: PMC8838976 DOI: 10.3390/plants11030313] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/14/2021] [Revised: 01/19/2022] [Accepted: 01/21/2022] [Indexed: 11/17/2022]
Abstract
The superior properties of silver nanoparticles (AgNPs) has resulted in their broad utilization worldwide, but also the risk of irreversible environment infestation. The plant cuticle and cell wall can trap a large part of the nanoparticles and thus protect the internal cell structures, where the cytoskeleton, for example, reacts very quickly to the threat, and defense signaling is subsequently triggered. We therefore used not only wild-type Arabidopsis seedlings, but also the glabra 1 mutant, which has a different composition of the cuticle. Both lines had GFP-labeled microtubules (MTs), allowing us to observe their arrangement. To quantify MT dynamics, we developed a new microscopic method based on the FRAP technique. The number and growth rate of MTs decreased significantly after AgNPs, similarly in both lines. However, the layer above the plasma membrane thickened significantly in wild-type plants. The levels of three major stress phytohormone derivatives—jasmonic, abscisic, and salicylic acids—after AgNP (with concomitant Ag+) treatment increased significantly (particularly in mutant plants) and to some extent resembled the plant response after mechanical stress. The profile of phytohormones helped us to estimate the mechanism of response to AgNPs and also to understand the broader physiological context of the observed changes in MT structure and dynamics.
Collapse
Affiliation(s)
- Jindřiška Angelini
- Department of Biochemistry and Microbiology, University of Chemistry and Technology Prague, Technická 3, 166 28 Prague, Czech Republic; (R.K.); (Z.N.); (O.V.)
- Correspondence:
| | - Ruslan Klassen
- Department of Biochemistry and Microbiology, University of Chemistry and Technology Prague, Technická 3, 166 28 Prague, Czech Republic; (R.K.); (Z.N.); (O.V.)
| | - Jitka Široká
- Laboratory of Growth Regulators, Institute of Experimental Botany of the Czech Academy of Sciences & Faculty of Science of Palacký University, Šlechtitelů 27, 78371 Olomouc, Czech Republic; (J.Š.); (O.N.)
| | - Ondřej Novák
- Laboratory of Growth Regulators, Institute of Experimental Botany of the Czech Academy of Sciences & Faculty of Science of Palacký University, Šlechtitelů 27, 78371 Olomouc, Czech Republic; (J.Š.); (O.N.)
| | - Kamil Záruba
- Deparment of Analytical Chemistry, University of Chemistry and Technology Prague, Technická 3, 166 28 Prague, Czech Republic;
| | - Jakub Siegel
- Department of Solid State Engineering, University of Chemistry and Technology Prague, Technická 3, 166 28 Prague, Czech Republic;
| | - Zuzana Novotná
- Department of Biochemistry and Microbiology, University of Chemistry and Technology Prague, Technická 3, 166 28 Prague, Czech Republic; (R.K.); (Z.N.); (O.V.)
| | - Olga Valentová
- Department of Biochemistry and Microbiology, University of Chemistry and Technology Prague, Technická 3, 166 28 Prague, Czech Republic; (R.K.); (Z.N.); (O.V.)
| |
Collapse
|
17
|
Xie L, Wen D, Wu C, Zhang C. Transcriptome analysis reveals the mechanism of internode development affecting maize stalk strength. BMC PLANT BIOLOGY 2022; 22:49. [PMID: 35073838 PMCID: PMC8785456 DOI: 10.1186/s12870-022-03435-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2021] [Accepted: 01/11/2022] [Indexed: 05/03/2023]
Abstract
BACKGROUND The stalk rind is one of the important factors affecting maize stalk strength that is closely related to stalk lodging. However, the mechanism of rind development in maize is still largely unknown. RESULTS In this study, we analyzed the mechanical, anatomical, and biochemical properties of the third basal internode in one maize non-stiff-stalk (NSS) line and two stiff-stalk (SS) lines. Compared with the NSS line, the two SS lines had a significantly higher rind penetrometer resistance, thicker rind, and higher dry matter, hemicellulose, cellulose, and lignin weights per unit length. RNA-seq analysis was used to compare transcriptomes of the third basal internode of the two SS lines and the NSS line at the ninth leaf and tasseling stages. Gene Ontology (GO) enrichment analysis revealed that genes involved in hydrolase activity (hydrolyzing O-glycosyl compounds) and cytoskeleton organization were significantly up-regulated in the two SS lines at the ninth leaf stage and that microtubule process-related genes were significantly up-regulated in the two SS lines at the tasseling stage. Moreover, the two SS lines had enhanced expression of cell wall metabolism-related genes at the tasseling stage. CONCLUSIONS The synthesis of cell wall polysaccharides and the cytoskeleton might play important roles in internode development. Our results can be applied for screening lodging-resistant inbred lines and breeding lodging-resistant cultivars in maize.
Collapse
Affiliation(s)
- Liuyong Xie
- State Key Laboratory of Crop Biology, Agronomy College, Shandong Agricultural University, Tai’an, Shandong Province 271018 P. R. China
| | - Daxing Wen
- State Key Laboratory of Crop Biology, Agronomy College, Shandong Agricultural University, Tai’an, Shandong Province 271018 P. R. China
| | - Chenglai Wu
- State Key Laboratory of Crop Biology, Agronomy College, Shandong Agricultural University, Tai’an, Shandong Province 271018 P. R. China
| | - Chunqing Zhang
- State Key Laboratory of Crop Biology, Agronomy College, Shandong Agricultural University, Tai’an, Shandong Province 271018 P. R. China
| |
Collapse
|
18
|
Gu Y, Rasmussen CG. Cell biology of primary cell wall synthesis in plants. THE PLANT CELL 2022; 34:103-128. [PMID: 34613413 PMCID: PMC8774047 DOI: 10.1093/plcell/koab249] [Citation(s) in RCA: 38] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2021] [Accepted: 10/01/2021] [Indexed: 05/07/2023]
Abstract
Building a complex structure such as the cell wall, with many individual parts that need to be assembled correctly from distinct sources within the cell, is a well-orchestrated process. Additional complexity is required to mediate dynamic responses to environmental and developmental cues. Enzymes, sugars, and other cell wall components are constantly and actively transported to and from the plasma membrane during diffuse growth. Cell wall components are transported in vesicles on cytoskeletal tracks composed of microtubules and actin filaments. Many of these components, and additional proteins, vesicles, and lipids are trafficked to and from the cell plate during cytokinesis. In this review, we first discuss how the cytoskeleton is initially organized to add new cell wall material or to build a new cell wall, focusing on similarities during these processes. Next, we discuss how polysaccharides and enzymes that build the cell wall are trafficked to the correct location by motor proteins and through other interactions with the cytoskeleton. Finally, we discuss some of the special features of newly formed cell walls generated during cytokinesis.
Collapse
Affiliation(s)
- Ying Gu
- Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania 16802
| | - Carolyn G Rasmussen
- Department of Botany and Plant Sciences, Center for Plant Cell Biology, University of California, Riverside, California 92521
| |
Collapse
|
19
|
Jagdale S, Rao U, Giri AP. Effectors of Root-Knot Nematodes: An Arsenal for Successful Parasitism. FRONTIERS IN PLANT SCIENCE 2021; 12:800030. [PMID: 35003188 PMCID: PMC8727514 DOI: 10.3389/fpls.2021.800030] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2021] [Accepted: 11/23/2021] [Indexed: 05/13/2023]
Abstract
Root-knot nematodes (RKNs) are notorious plant-parasitic nematodes first recorded in 1855 in cucumber plants. They are microscopic, obligate endoparasites that cause severe losses in agriculture and horticulture. They evade plant immunity, hijack the plant cell cycle, and metabolism to modify healthy cells into giant cells (GCs) - RKN feeding sites. RKNs secrete various effector molecules which suppress the plant defence and tamper with plant cellular and molecular biology. These effectors originate mainly from sub-ventral and dorsal oesophageal glands. Recently, a few non-oesophageal gland secreted effectors have been discovered. Effectors are essential for the entry of RKNs in plants, subsequently formation and maintenance of the GCs during the parasitism. In the past two decades, advanced genomic and post-genomic techniques identified many effectors, out of which only a few are well characterized. In this review, we provide molecular and functional details of RKN effectors secreted during parasitism. We list the known effectors and pinpoint their molecular functions. Moreover, we attempt to provide a comprehensive insight into RKN effectors concerning their implications on overall plant and nematode biology. Since effectors are the primary and prime molecular weapons of RKNs to invade the plant, it is imperative to understand their intriguing and complex functions to design counter-strategies against RKN infection.
Collapse
Affiliation(s)
- Shounak Jagdale
- Plant Molecular Biology Unit, Division of Biochemical Sciences, CSIR-National Chemical Laboratory, Pune, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India
| | - Uma Rao
- Division of Nematology, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Ashok P. Giri
- Plant Molecular Biology Unit, Division of Biochemical Sciences, CSIR-National Chemical Laboratory, Pune, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India
| |
Collapse
|
20
|
The Arabidopsis thaliana Kinesin-5 AtKRP125b Is a Processive, Microtubule-Sliding Motor Protein with Putative Plant-Specific Functions. Int J Mol Sci 2021; 22:ijms222111361. [PMID: 34768803 PMCID: PMC8583919 DOI: 10.3390/ijms222111361] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2021] [Revised: 10/15/2021] [Accepted: 10/18/2021] [Indexed: 12/02/2022] Open
Abstract
The formation and maintenance of the mitotic spindle during cell division requires several microtubule-interacting motor proteins. Members of the kinesin-5 family play an essential role in the bipolar organization of the spindle. These highly conserved, homotetrameric proteins cross-link anti-parallel microtubules and slide them apart to elongate the spindle during the equal separation of chromosomes. Whereas vertebrate kinesin-5 proteins are well studied, knowledge about the biochemical properties and the function of plant kinesin-5 proteins is still limited. Here, we characterized the properties of AtKRP125b, one of four kinesin-5 proteins in Arabidopsis thaliana. In in vitro motility assays, AtKRP125b displayed the archetypal characteristics of a kinesin-5 protein, a low velocity of about 20 nm·s−1, and a plus end-directed, processive movement. Moreover, AtKRP125b was able to cross-link microtubules and to slide them apart, as required for developing and maintaining the mitotic spindle. In line with such a function, GFP-AtKRP125b fusion proteins were predominantly detected in the nucleus when expressed in Arabidopsis thaliana leaf protoplasts or Nicotiana benthamiana epidermis cells and analyzed by confocal microscopy. However, we also detected GFP signals in the cytoplasm, suggesting additional functions. By generating and analyzing AtKRP125b promoter-reporter lines, we showed that the AtKRP125b promoter was active in the vascular tissue of roots, lateral roots, cotyledons, and true leaves. Remarkably, we could not detect promoter activity in meristematic tissues. Taken together, our biochemical data support a role of AtKRP125b in mitosis, but it may also have additional functions outside the nucleus and during interphase.
Collapse
|
21
|
Zang J, Klemm S, Pain C, Duckney P, Bao Z, Stamm G, Kriechbaumer V, Bürstenbinder K, Hussey PJ, Wang P. A novel plant actin-microtubule bridging complex regulates cytoskeletal and ER structure at ER-PM contact sites. Curr Biol 2021; 31:1251-1260.e4. [PMID: 33592189 DOI: 10.1016/j.cub.2020.12.009] [Citation(s) in RCA: 36] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2020] [Revised: 10/15/2020] [Accepted: 12/09/2020] [Indexed: 01/27/2023]
Abstract
In plants, the cortical endoplasmic reticulum (ER) network is connected to the plasma membrane (PM) through the ER-PM contact sites (EPCSs), whose structures are maintained by EPCS resident proteins and the cytoskeleton.1-7 Strong co-alignment between EPCSs and the cytoskeleton is observed in plants,1,8 but little is known of how the cytoskeleton is maintained and regulated at the EPCS. Here, we have used a yeast-two-hybrid screen and subsequent in vivo interaction studies in plants by fluorescence resonance energy transfer (FRET)-fluorescence lifetime imaging microscopy (FLIM) analysis to identify two microtubule binding proteins, KLCR1 (kinesin-light-chain-related protein 1) and IQD2 (IQ67-domain 2), that interact with the actin binding protein NET3C and form a component of plant EPCS that mediates the link between the actin and microtubule networks. The NET3C-KLCR1-IQD2 module, acting as an actin-microtubule bridging complex, has a direct influence on ER morphology and EPCS structure. Their loss-of-function mutants, net3a/NET3C RNAi, klcr1, or iqd2, exhibit defects in pavement cell morphology, which we suggest is linked to the disorganization of both actin filaments and microtubules. In conclusion, our results reveal a novel cytoskeletal-associated complex, which is essential for the maintenance and organization of cytoskeletal structure and ER morphology at the EPCS and for normal plant cell morphogenesis.
Collapse
Affiliation(s)
- Jingze Zang
- Key Laboratory of Horticultural Plant Biology (MOE), College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China; Interdisciplinary Sciences Research Institute, Huazhong Agricultural University, Wuhan 430007, China; Department of Biosciences, Durham University, South Road, Durham DH1 3LE, UK
| | - Sandra Klemm
- Department of Molecular Signal Processing, Leibniz Institute of Plant Biochemistry, 06120 Halle, Germany
| | - Charlotte Pain
- Plant Cell Biology, Oxford Brookes University, Oxford OX3 0BP, UK
| | - Patrick Duckney
- Department of Biosciences, Durham University, South Road, Durham DH1 3LE, UK
| | - Zhiru Bao
- Key Laboratory of Horticultural Plant Biology (MOE), College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China; Interdisciplinary Sciences Research Institute, Huazhong Agricultural University, Wuhan 430007, China
| | - Gina Stamm
- Department of Molecular Signal Processing, Leibniz Institute of Plant Biochemistry, 06120 Halle, Germany
| | | | - Katharina Bürstenbinder
- Department of Molecular Signal Processing, Leibniz Institute of Plant Biochemistry, 06120 Halle, Germany
| | - Patrick J Hussey
- Department of Biosciences, Durham University, South Road, Durham DH1 3LE, UK; Department of Experimental Plant Biology, Charles University, Faculty of Science, Viničná 5, 128 43 Praha 2, Czechia.
| | - Pengwei Wang
- Key Laboratory of Horticultural Plant Biology (MOE), College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, Hubei Province, China; Interdisciplinary Sciences Research Institute, Huazhong Agricultural University, Wuhan 430007, China.
| |
Collapse
|
22
|
Zhang B, Gao Y, Zhang L, Zhou Y. The plant cell wall: Biosynthesis, construction, and functions. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2021; 63:251-272. [PMID: 33325153 DOI: 10.1111/jipb.13055] [Citation(s) in RCA: 227] [Impact Index Per Article: 56.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2020] [Accepted: 12/15/2020] [Indexed: 05/19/2023]
Abstract
The plant cell wall is composed of multiple biopolymers, representing one of the most complex structural networks in nature. Hundreds of genes are involved in building such a natural masterpiece. However, the plant cell wall is the least understood cellular structure in plants. Due to great progress in plant functional genomics, many achievements have been made in uncovering cell wall biosynthesis, assembly, and architecture, as well as cell wall regulation and signaling. Such information has significantly advanced our understanding of the roles of the cell wall in many biological and physiological processes and has enhanced our utilization of cell wall materials. The use of cutting-edge technologies such as single-molecule imaging, nuclear magnetic resonance spectroscopy, and atomic force microscopy has provided much insight into the plant cell wall as an intricate nanoscale network, opening up unprecedented possibilities for cell wall research. In this review, we summarize the major advances made in understanding the cell wall in this era of functional genomics, including the latest findings on the biosynthesis, construction, and functions of the cell wall.
Collapse
Affiliation(s)
- Baocai Zhang
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, 100101, China
| | - Yihong Gao
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, 100101, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Lanjun Zhang
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, 100101, China
| | - Yihua Zhou
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, 100101, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| |
Collapse
|
23
|
Augustine RC. FRA1 Kinesin Prevents Cell Wall Deposition from Going Off the Rails. THE PLANT CELL 2020; 32:2455-2456. [PMID: 32518127 PMCID: PMC7401019 DOI: 10.1105/tpc.20.00451] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
|